AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1302850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1302850 MtrunA17_Chr4g0074261 98.387 62 1 0 1 62 179 240 6.96e-36 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1302850 AT2G33680.1 45.455 66 34 1 1 64 179 244 2.53e-14 66.6
Msa1302850 AT2G33680.8 45.455 66 34 1 1 64 179 244 2.53e-14 66.6
Msa1302850 AT2G33680.7 45.455 66 34 1 1 64 179 244 2.53e-14 66.6
Msa1302850 AT2G33680.5 45.455 66 34 1 1 64 254 319 2.59e-14 66.6
Msa1302850 AT2G33680.3 45.455 66 34 1 1 64 243 308 2.62e-14 66.6
Msa1302850 AT2G33680.2 45.455 66 34 1 1 64 243 308 2.62e-14 66.6
Msa1302850 AT2G33680.4 45.455 66 34 1 1 64 243 308 2.62e-14 66.6
Msa1302850 AT2G33680.6 45.455 66 34 1 1 64 234 299 2.94e-14 66.6

Find 54 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGGGCAACTATGATTTC+TGG 0.121164 8_3:+65501267 Msa1302850:CDS
TAAACACAGAGCTCATTAAA+TGG 0.250914 8_3:-65504304 None:intergenic
TTTGAGCCTGAAGGAACTTT+TGG 0.255390 8_3:+65503997 Msa1302850:three_prime_UTR
AAAGAAAGTTAGAGAATTTG+AGG 0.304650 8_3:+65504032 Msa1302850:three_prime_UTR
AGTCATAATGTGAAAGGTTT+AGG 0.325134 8_3:+65504259 Msa1302850:three_prime_UTR
CTTGGGCAACTATGATTTCT+GGG 0.327960 8_3:+65501268 Msa1302850:CDS
CTGAGAGAAATACGGTTTCT+TGG 0.328262 8_3:+65501250 Msa1302850:CDS
CGGGATGAAATTTGAATTTG+AGG 0.358980 8_3:+65504230 Msa1302850:three_prime_UTR
TCTTGGCCAACAGAAAGATA+TGG 0.398922 8_3:-65504090 None:intergenic
TCAAACCCAAAAGTTCCTTC+AGG 0.420125 8_3:-65504003 None:intergenic
GTTCCTTCAGGCTCAAAGTA+AGG 0.421600 8_3:-65503991 None:intergenic
TTGCTGGCTATTTGGACCAT+TGG 0.424370 8_3:-65503886 None:intergenic
TGAGAGAAATACGGTTTCTT+GGG 0.439498 8_3:+65501251 Msa1302850:CDS
TTAGTAATGAACTAATCATC+TGG 0.439837 8_3:-65503937 None:intergenic
GAGGATCGTCACCCACCAAC+AGG 0.439990 8_3:+65503847 Msa1302850:three_prime_UTR
TCATTTGCTTGGTGTTTACA+TGG 0.441062 8_3:-65504192 None:intergenic
TTCTCGTGACATTGCTGATA+AGG 0.443451 8_3:+65501296 Msa1302850:CDS
CATTGCTGATAAGGCGGTTG+AGG 0.449686 8_3:+65501305 Msa1302850:CDS
TCAATTACCTTCCCTGTTGG+TGG 0.453835 8_3:-65503859 None:intergenic
AAAGATATGGCTGATCCTGC+TGG 0.456336 8_3:-65504077 None:intergenic
TTGCTACAAGCCACCGCAAA+CGG 0.457572 8_3:-65503254 None:intergenic
CAAATTTCATCCCGTGGAGC+TGG 0.463920 8_3:-65504221 None:intergenic
TCATTACTAACAATGCTTGA+GGG 0.471617 8_3:+65503950 Msa1302850:three_prime_UTR
AAACACAGAGCTCATTAAAT+GGG 0.488640 8_3:-65504303 None:intergenic
ATGAGTCTGTCCAGCTCCAC+GGG 0.498051 8_3:+65504211 Msa1302850:three_prime_UTR
GTTTGTTTACACTGGTAGAC+AGG 0.501134 8_3:+65501410 Msa1302850:CDS
CAGAATGCCTGAGAGAAATA+CGG 0.501829 8_3:+65501242 None:intergenic
TTCATTACTAACAATGCTTG+AGG 0.504130 8_3:+65503949 Msa1302850:three_prime_UTR
CTCAAAGTAAGGTTAATGTC+AGG 0.506645 8_3:-65503980 None:intergenic
CAAGAAACCGTATTTCTCTC+AGG 0.514267 8_3:-65501249 None:intergenic
GCTGGACAGACTCATTTGCT+TGG 0.518589 8_3:-65504203 None:intergenic
CAATTACCTTCCCTGTTGGT+GGG 0.520174 8_3:-65503858 None:intergenic
GAGATACAAATTTCCGTTTG+CGG 0.522915 8_3:+65503241 Msa1302850:CDS
TTGTCAATTACCTTCCCTGT+TGG 0.526095 8_3:-65503862 None:intergenic
AGTGCATTGCCGTATCTGTC+TGG 0.534568 8_3:+65503801 Msa1302850:three_prime_UTR
CAAATTCAAATTTCATCCCG+TGG 0.540876 8_3:-65504227 None:intergenic
ATCATCTGGATGTCCGTCAC+AGG 0.543543 8_3:-65503923 None:intergenic
TTTATTCATGAAGATCAAGA+AGG 0.553252 8_3:+65503211 Msa1302850:intron
AATAAAAGTCATAATGTGAA+AGG 0.556919 8_3:+65504253 Msa1302850:three_prime_UTR
GATCAGCCATATCTTTCTGT+TGG 0.557091 8_3:+65504084 Msa1302850:three_prime_UTR
CATTACTAACAATGCTTGAG+GGG 0.559288 8_3:+65503951 Msa1302850:three_prime_UTR
GTGTTTACATGGAACGCTCG+TGG 0.561036 8_3:-65504181 None:intergenic
CGAAAATTTCAAGCCTGTGA+CGG 0.567847 8_3:+65503910 Msa1302850:three_prime_UTR
TAACCTTACTTTGAGCCTGA+AGG 0.574045 8_3:+65503988 Msa1302850:three_prime_UTR
AAACGGAAATTTGTATCTCG+TGG 0.587832 8_3:-65503237 None:intergenic
AAAAGAGTGAAACTTCCAGC+AGG 0.589554 8_3:+65504062 Msa1302850:three_prime_UTR
AATGAGTCTGTCCAGCTCCA+CGG 0.596136 8_3:+65504210 Msa1302850:three_prime_UTR
AGTGATGTGTTTGTTTACAC+TGG 0.616220 8_3:+65501402 Msa1302850:CDS
TCGTCACCCACCAACAGGGA+AGG 0.634825 8_3:+65503852 Msa1302850:three_prime_UTR
TCGTGACATTGCTGATAAGG+CGG 0.635792 8_3:+65501299 Msa1302850:CDS
ATACAAATTTCCGTTTGCGG+TGG 0.639152 8_3:+65503244 Msa1302850:CDS
ATTACTAACAATGCTTGAGG+GGG 0.641845 8_3:+65503952 Msa1302850:three_prime_UTR
GAAGGTAATTGACAAGCCAA+TGG 0.646853 8_3:+65503870 Msa1302850:three_prime_UTR
AGGATCGTCACCCACCAACA+GGG 0.686647 8_3:+65503848 Msa1302850:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATCAAATGAAAATAA+AGG - chr8_3:65503196-65503215 None:intergenic 10.0%
!!! TTTTAAATAAAACTGAAAAT+TGG - chr8_3:65503434-65503453 None:intergenic 10.0%
!! AACAATAAAAAACAATAATT+TGG - chr8_3:65503684-65503703 None:intergenic 10.0%
!! AACAAAATAAAATCATTCTA+TGG - chr8_3:65502912-65502931 None:intergenic 15.0%
!!! AATGATTTTATTTTGTTGTA+TGG + chr8_3:65502915-65502934 Msa1302850:intron 15.0%
!!! TTTACATTTTCAAGAAATTT+AGG + chr8_3:65503385-65503404 Msa1302850:intron 15.0%
!!! TTACATTTTCAAGAAATTTA+GGG + chr8_3:65503386-65503405 Msa1302850:intron 15.0%
!! TTTAATAAAATGCATTCTTC+TGG + chr8_3:65501633-65501652 Msa1302850:intron 20.0%
!! AAATTATCAATAACAGTTTC+AGG - chr8_3:65502842-65502861 None:intergenic 20.0%
!!! ATTGTTGATAAGTAAAGAAT+GGG - chr8_3:65502889-65502908 None:intergenic 20.0%
!!! TTTTATTTTGTTGTATGGAT+TGG + chr8_3:65502920-65502939 Msa1302850:intron 20.0%
!! TTATTAATTGAAACAGTTTC+AGG + chr8_3:65503143-65503162 Msa1302850:intron 20.0%
!! AATAAAACTGAAAATTGGAA+TGG - chr8_3:65503429-65503448 None:intergenic 20.0%
!! TAAAGCTTTCAAAATAGAAA+AGG - chr8_3:65503470-65503489 None:intergenic 20.0%
!! AATAAAAGTCATAATGTGAA+AGG + chr8_3:65504253-65504272 Msa1302850:three_prime_UTR 20.0%
!!! AGGTTTTCTTATACATAAAT+TGG - chr8_3:65504422-65504441 None:intergenic 20.0%
!!! CATTCACTTGCTATTAAAAA+TGG + chr8_3:65501435-65501454 Msa1302850:intron 25.0%
! TCAAGTATATATACAGCTTT+AGG + chr8_3:65502602-65502621 Msa1302850:intron 25.0%
! CAAGTATATATACAGCTTTA+GGG + chr8_3:65502603-65502622 Msa1302850:intron 25.0%
!! AAGTATATATACAGCTTTAG+GGG + chr8_3:65502604-65502623 Msa1302850:intron 25.0%
!! ACTGTTATTGATAATTTGAC+AGG + chr8_3:65502845-65502864 Msa1302850:intron 25.0%
! TTTGACAGGTATTATTAGAT+AGG + chr8_3:65502859-65502878 Msa1302850:intron 25.0%
!! GATTGTTGATAAGTAAAGAA+TGG - chr8_3:65502890-65502909 None:intergenic 25.0%
! ATATTCACATCACAAAAGAA+AGG - chr8_3:65503089-65503108 None:intergenic 25.0%
! ATATAGAGAGAAAGAGATAT+TGG + chr8_3:65503117-65503136 Msa1302850:intron 25.0%
! TTTATTCATGAAGATCAAGA+AGG + chr8_3:65503211-65503230 Msa1302850:intron 25.0%
!! ATAAAACCCTTCTTTGATTT+AGG + chr8_3:65503337-65503356 Msa1302850:intron 25.0%
! CAAAAACCTAAATCAAAGAA+GGG - chr8_3:65503346-65503365 None:intergenic 25.0%
! ACAAAAACCTAAATCAAAGA+AGG - chr8_3:65503347-65503366 None:intergenic 25.0%
!!! TTTTTACTTTTTACCCTGAT+AGG + chr8_3:65503522-65503541 Msa1302850:intron 25.0%
! ACTTATAAAAACACCTACAA+AGG - chr8_3:65503589-65503608 None:intergenic 25.0%
! TTAGTAATGAACTAATCATC+TGG - chr8_3:65503940-65503959 None:intergenic 25.0%
! AAAGAAAGTTAGAGAATTTG+AGG + chr8_3:65504032-65504051 Msa1302850:three_prime_UTR 25.0%
!!! TGGCCAAGAAATTTTAAAAT+TGG + chr8_3:65504104-65504123 Msa1302850:three_prime_UTR 25.0%
!!! GCTCCAATTTTAAAATTTCT+TGG - chr8_3:65504110-65504129 None:intergenic 25.0%
! CAAAAATGTAAATTGGAAAG+AGG + chr8_3:65504132-65504151 Msa1302850:three_prime_UTR 25.0%
! TTGAGGTTTTTGAACTTATG+CGG + chr8_3:65501322-65501341 Msa1302850:CDS 30.0%
CTTCTGAGTTTACTTTAGTT+GGG + chr8_3:65501664-65501683 Msa1302850:intron 30.0%
TTCTGAGTTTACTTTAGTTG+GGG + chr8_3:65501665-65501684 Msa1302850:intron 30.0%
TTTGGACTTCTATCATAACA+GGG + chr8_3:65501874-65501893 Msa1302850:intron 30.0%
ATAACAGGGTATGTACAAAA+TGG + chr8_3:65501888-65501907 Msa1302850:intron 30.0%
TAACAGGGTATGTACAAAAT+GGG + chr8_3:65501889-65501908 Msa1302850:intron 30.0%
!!! ATGATGGGTACCTTATTTTT+TGG + chr8_3:65502129-65502148 Msa1302850:intron 30.0%
ATATCTGGACTTTCTCAAAA+CGG + chr8_3:65502191-65502210 Msa1302850:intron 30.0%
TGTTTGTGGCGTATATTATT+AGG + chr8_3:65502482-65502501 Msa1302850:intron 30.0%
AATACATAAGAAGATGACTC+TGG - chr8_3:65502578-65502597 None:intergenic 30.0%
! ACCAAATTGATGATAGATGA+AGG + chr8_3:65502791-65502810 Msa1302850:intron 30.0%
TCCTTCATCTATCATCAATT+TGG - chr8_3:65502795-65502814 None:intergenic 30.0%
ATTACAAAGTGCACTTTGTA+TGG - chr8_3:65502967-65502986 None:intergenic 30.0%
TTTGCCAGGATTATTACAAA+GGG + chr8_3:65502997-65503016 Msa1302850:intron 30.0%
! AATGATGATGATGATGATGA+TGG - chr8_3:65503031-65503050 None:intergenic 30.0%
AACTGAAAATTGGAATGGAA+TGG - chr8_3:65503424-65503443 None:intergenic 30.0%
ATCAAATGCAAAAAGTCTGA+TGG - chr8_3:65503561-65503580 None:intergenic 30.0%
AGTTTCTTTACGTTAAAGCA+TGG + chr8_3:65503606-65503625 Msa1302850:intron 30.0%
TCAAAAACAACTCAACTTCT+TGG + chr8_3:65503730-65503749 Msa1302850:intron 30.0%
TTCATTACTAACAATGCTTG+AGG + chr8_3:65503949-65503968 Msa1302850:three_prime_UTR 30.0%
TCATTACTAACAATGCTTGA+GGG + chr8_3:65503950-65503969 Msa1302850:three_prime_UTR 30.0%
AGTCATAATGTGAAAGGTTT+AGG + chr8_3:65504259-65504278 Msa1302850:three_prime_UTR 30.0%
AAACACAGAGCTCATTAAAT+GGG - chr8_3:65504306-65504325 None:intergenic 30.0%
TAAACACAGAGCTCATTAAA+TGG - chr8_3:65504307-65504326 None:intergenic 30.0%
TGAGAGAAATACGGTTTCTT+GGG + chr8_3:65501251-65501270 Msa1302850:CDS 35.0%
AGTGATGTGTTTGTTTACAC+TGG + chr8_3:65501402-65501421 Msa1302850:CDS 35.0%
GGGATAAGAATTCGATTACT+TGG + chr8_3:65501553-65501572 Msa1302850:intron 35.0%
CCAACTAAAGTAAACTCAGA+AGG - chr8_3:65501666-65501685 None:intergenic 35.0%
CCTTCTGAGTTTACTTTAGT+TGG + chr8_3:65501663-65501682 Msa1302850:intron 35.0%
! ATTGTATGTTTTGTCAGCTG+TGG + chr8_3:65501773-65501792 Msa1302850:intron 35.0%
AACAACCTGATGTTGTTCTT+TGG + chr8_3:65501856-65501875 Msa1302850:intron 35.0%
CTTTGGACTTCTATCATAAC+AGG + chr8_3:65501873-65501892 Msa1302850:intron 35.0%
AACAGGGTATGTACAAAATG+GGG + chr8_3:65501890-65501909 Msa1302850:intron 35.0%
TATCCCCAATGAACTAACAA+TGG + chr8_3:65501962-65501981 Msa1302850:intron 35.0%
TTGCCATTGTTAGTTCATTG+GGG - chr8_3:65501968-65501987 None:intergenic 35.0%
CTTGCCATTGTTAGTTCATT+GGG - chr8_3:65501969-65501988 None:intergenic 35.0%
ACTTGCCATTGTTAGTTCAT+TGG - chr8_3:65501970-65501989 None:intergenic 35.0%
! TTCAAGTTAGAAGTTCCGAT+TGG + chr8_3:65502065-65502084 Msa1302850:intron 35.0%
TCTGCAATGTATACAAAGTG+TGG + chr8_3:65502098-65502117 Msa1302850:intron 35.0%
GTATACAAAGTGTGGAAGTT+TGG + chr8_3:65502106-65502125 Msa1302850:intron 35.0%
!!! ATGGGTACCTTATTTTTTGG+AGG + chr8_3:65502132-65502151 Msa1302850:intron 35.0%
! AAGGCATCCTCCAAAAAATA+AGG - chr8_3:65502142-65502161 None:intergenic 35.0%
ATTCCACGAAATTACATCTC+TGG - chr8_3:65502165-65502184 None:intergenic 35.0%
TTTGAGGAGATGTTATTGGA+GGG + chr8_3:65502239-65502258 Msa1302850:intron 35.0%
AGAGTTCATTGAATCTGCAA+CGG + chr8_3:65502445-65502464 Msa1302850:intron 35.0%
!! TATATACAGCTTTAGGGGAT+AGG + chr8_3:65502609-65502628 Msa1302850:intron 35.0%
!! ATATACAGCTTTAGGGGATA+GGG + chr8_3:65502610-65502629 Msa1302850:intron 35.0%
!! TTGGTTCATGTGTTTGTTGT+TGG + chr8_3:65502716-65502735 Msa1302850:intron 35.0%
GCAATGAATCAATAAGAGGT+TGG - chr8_3:65502820-65502839 None:intergenic 35.0%
TCAGGCAATGAATCAATAAG+AGG - chr8_3:65502824-65502843 None:intergenic 35.0%
TAATTATCTTGACCTTTGCC+AGG + chr8_3:65502983-65503002 Msa1302850:intron 35.0%
CTTTGTAATAATCCTGGCAA+AGG - chr8_3:65502998-65503017 None:intergenic 35.0%
CTTTGCCAGGATTATTACAA+AGG + chr8_3:65502996-65503015 Msa1302850:intron 35.0%
AAACGGAAATTTGTATCTCG+TGG - chr8_3:65503240-65503259 None:intergenic 35.0%
GAGATACAAATTTCCGTTTG+CGG + chr8_3:65503241-65503260 Msa1302850:CDS 35.0%
AGTCTGATGGAACAAGATAA+GGG - chr8_3:65503548-65503567 None:intergenic 35.0%
AAGTCTGATGGAACAAGATA+AGG - chr8_3:65503549-65503568 None:intergenic 35.0%
CGTTGGAGGAAAAATGATAT+GGG - chr8_3:65503638-65503657 None:intergenic 35.0%
!! CCATATCATTTTTCCTCCAA+CGG + chr8_3:65503636-65503655 Msa1302850:intron 35.0%
ATTTGGAAGTGACAACTATC+AGG - chr8_3:65503667-65503686 None:intergenic 35.0%
AAAACAACTCAACTTCTTGG+TGG + chr8_3:65503733-65503752 Msa1302850:intron 35.0%
CAAAAAACACCAGACAGATA+CGG - chr8_3:65503813-65503832 None:intergenic 35.0%
CATTACTAACAATGCTTGAG+GGG + chr8_3:65503951-65503970 Msa1302850:three_prime_UTR 35.0%
ATTACTAACAATGCTTGAGG+GGG + chr8_3:65503952-65503971 Msa1302850:three_prime_UTR 35.0%
CTCAAAGTAAGGTTAATGTC+AGG - chr8_3:65503983-65504002 None:intergenic 35.0%
GGAGCAGCAAAAATGTAAAT+TGG + chr8_3:65504125-65504144 Msa1302850:three_prime_UTR 35.0%
!! TCATTTGCTTGGTGTTTACA+TGG - chr8_3:65504195-65504214 None:intergenic 35.0%
CAAATTCAAATTTCATCCCG+TGG - chr8_3:65504230-65504249 None:intergenic 35.0%
CGGGATGAAATTTGAATTTG+AGG + chr8_3:65504230-65504249 Msa1302850:three_prime_UTR 35.0%
CAAGAAACCGTATTTCTCTC+AGG - chr8_3:65501252-65501271 None:intergenic 40.0%
CTGAGAGAAATACGGTTTCT+TGG + chr8_3:65501250-65501269 Msa1302850:CDS 40.0%
TCTTGGGCAACTATGATTTC+TGG + chr8_3:65501267-65501286 Msa1302850:CDS 40.0%
CTTGGGCAACTATGATTTCT+GGG + chr8_3:65501268-65501287 Msa1302850:CDS 40.0%
TTCTCGTGACATTGCTGATA+AGG + chr8_3:65501296-65501315 Msa1302850:CDS 40.0%
GTTTGTTTACACTGGTAGAC+AGG + chr8_3:65501410-65501429 Msa1302850:CDS 40.0%
GTGACGATGTATGCTAAATG+TGG + chr8_3:65501492-65501511 Msa1302850:intron 40.0%
TTCGATTACTTGGTCAGCTA+TGG + chr8_3:65501563-65501582 Msa1302850:intron 40.0%
! ACCTTTGTGCTGTTGTAGAA+GGG + chr8_3:65501706-65501725 Msa1302850:intron 40.0%
!! CATGGTTTTGCCTTCAAGTT+GGG + chr8_3:65501738-65501757 Msa1302850:intron 40.0%
!!! ATGGTTTTGCCTTCAAGTTG+GGG + chr8_3:65501739-65501758 Msa1302850:intron 40.0%
GTGGATATGTACGCAAAATG+TGG + chr8_3:65501795-65501814 Msa1302850:intron 40.0%
GAAGTCCAAAGAACAACATC+AGG - chr8_3:65501864-65501883 None:intergenic 40.0%
GTACAAAATGGGGATTACGA+AGG + chr8_3:65501900-65501919 Msa1302850:intron 40.0%
AAGGTGGTCTCAATCTGTAT+GGG + chr8_3:65501919-65501938 Msa1302850:intron 40.0%
TCTGTATGGGAAAATGCAGA+TGG + chr8_3:65501932-65501951 Msa1302850:intron 40.0%
CATGCTAGGATCATCAAGTA+TGG + chr8_3:65502041-65502060 Msa1302850:intron 40.0%
AAGTGTGGAAGTTTGGATGA+TGG + chr8_3:65502113-65502132 Msa1302850:intron 40.0%
AGTGTGGAAGTTTGGATGAT+GGG + chr8_3:65502114-65502133 Msa1302850:intron 40.0%
CACGAAATTACATCTCTGGA+AGG - chr8_3:65502161-65502180 None:intergenic 40.0%
CTTCCAGAGATGTAATTTCG+TGG + chr8_3:65502159-65502178 Msa1302850:intron 40.0%
TCGTGGAATGCAATGATATC+TGG + chr8_3:65502176-65502195 Msa1302850:intron 40.0%
GCTGTTTGAGGAGATGTTAT+TGG + chr8_3:65502235-65502254 Msa1302850:intron 40.0%
GTTTGAGGAGATGTTATTGG+AGG + chr8_3:65502238-65502257 Msa1302850:intron 40.0%
ATTCACAAACGTGACTGGAT+CGG - chr8_3:65502273-65502292 None:intergenic 40.0%
AGAAGATTCACAAACGTGAC+TGG - chr8_3:65502278-65502297 None:intergenic 40.0%
TCTCTCTGCTTGTAGTCATA+TGG + chr8_3:65502295-65502314 Msa1302850:intron 40.0%
CTCTCTGCTTGTAGTCATAT+GGG + chr8_3:65502296-65502315 Msa1302850:intron 40.0%
TGAGTTTAACATTGCTCCGA+TGG + chr8_3:65502361-65502380 Msa1302850:intron 40.0%
CAAGCATAATGCTCTACCAT+CGG - chr8_3:65502380-65502399 None:intergenic 40.0%
TAGGAGCTTGTAAGAACCAT+CGG + chr8_3:65502501-65502520 Msa1302850:intron 40.0%
TACGAACTAGGTGTTTATGC+TGG + chr8_3:65502527-65502546 Msa1302850:intron 40.0%
TTATGCTGGAGAGAAACTAG+TGG + chr8_3:65502541-65502560 Msa1302850:intron 40.0%
CTGGATTGAGTTAAGGAGTT+TGG + chr8_3:65502697-65502716 Msa1302850:intron 40.0%
!! ACCCGCAAGTTGATGAAATA+CGG + chr8_3:65502750-65502769 Msa1302850:intron 40.0%
ACCGTATTTCATCAACTTGC+GGG - chr8_3:65502754-65502773 None:intergenic 40.0%
GACCGTATTTCATCAACTTG+CGG - chr8_3:65502755-65502774 None:intergenic 40.0%
!! TGTTGTATGGATTGGACAGT+TGG + chr8_3:65502928-65502947 Msa1302850:intron 40.0%
!! GATGATGATGATGATGGTCA+AGG - chr8_3:65503025-65503044 None:intergenic 40.0%
CAAAAGAAAGGCAAGCAGAT+GGG - chr8_3:65503077-65503096 None:intergenic 40.0%
ACAAAAGAAAGGCAAGCAGA+TGG - chr8_3:65503078-65503097 None:intergenic 40.0%
ATACAAATTTCCGTTTGCGG+TGG + chr8_3:65503244-65503263 Msa1302850:CDS 40.0%
AACAAGATAAGGGCCTATCA+GGG - chr8_3:65503538-65503557 None:intergenic 40.0%
CATTTGATCACTGCCTTTGT+AGG + chr8_3:65503573-65503592 Msa1302850:intron 40.0%
CCGTTGGAGGAAAAATGATA+TGG - chr8_3:65503639-65503658 None:intergenic 40.0%
! CAACTATCAGGATTTTCCGT+TGG - chr8_3:65503655-65503674 None:intergenic 40.0%
! TTGGTGGTATATCCGTTTAC+AGG + chr8_3:65503749-65503768 Msa1302850:intron 40.0%
TGGTATATCCGTTTACAGGA+TGG + chr8_3:65503753-65503772 Msa1302850:intron 40.0%
!!! ATCTGTCTGGTGTTTTTTGC+TGG + chr8_3:65503814-65503833 Msa1302850:three_prime_UTR 40.0%
TTGTCAATTACCTTCCCTGT+TGG - chr8_3:65503865-65503884 None:intergenic 40.0%
GAAGGTAATTGACAAGCCAA+TGG + chr8_3:65503870-65503889 Msa1302850:three_prime_UTR 40.0%
!! ATTTTCGGTTGCTGGCTATT+TGG - chr8_3:65503897-65503916 None:intergenic 40.0%
! CGTCACAGGCTTGAAATTTT+CGG - chr8_3:65503912-65503931 None:intergenic 40.0%
CGAAAATTTCAAGCCTGTGA+CGG + chr8_3:65503910-65503929 Msa1302850:three_prime_UTR 40.0%
TAACCTTACTTTGAGCCTGA+AGG + chr8_3:65503988-65504007 Msa1302850:three_prime_UTR 40.0%
! TTTGAGCCTGAAGGAACTTT+TGG + chr8_3:65503997-65504016 Msa1302850:three_prime_UTR 40.0%
! TTGAGCCTGAAGGAACTTTT+GGG + chr8_3:65503998-65504017 Msa1302850:three_prime_UTR 40.0%
TCAAACCCAAAAGTTCCTTC+AGG - chr8_3:65504006-65504025 None:intergenic 40.0%
AAAAGAGTGAAACTTCCAGC+AGG + chr8_3:65504062-65504081 Msa1302850:three_prime_UTR 40.0%
GATCAGCCATATCTTTCTGT+TGG + chr8_3:65504084-65504103 Msa1302850:three_prime_UTR 40.0%
TCTTGGCCAACAGAAAGATA+TGG - chr8_3:65504093-65504112 None:intergenic 40.0%
TCGTGACATTGCTGATAAGG+CGG + chr8_3:65501299-65501318 Msa1302850:CDS 45.0%
! TTTTGAACTTATGCGGCGTG+AGG + chr8_3:65501329-65501348 Msa1302850:CDS 45.0%
!! ATGTGGTAGCCTTGATGATG+CGG + chr8_3:65501509-65501528 Msa1302850:intron 45.0%
!!! GGTTCGGACTTTTGAGTTCT+CGG + chr8_3:65501530-65501549 Msa1302850:intron 45.0%
!!! GTTCGGACTTTTGAGTTCTC+GGG + chr8_3:65501531-65501550 Msa1302850:intron 45.0%
!!! TTCGGACTTTTGAGTTCTCG+GGG + chr8_3:65501532-65501551 Msa1302850:intron 45.0%
ACTTGGTCAGCTATGGTTAC+TGG + chr8_3:65501570-65501589 Msa1302850:intron 45.0%
! TATGGTTACTGGTTATGCGC+AGG + chr8_3:65501581-65501600 Msa1302850:intron 45.0%
! ATGGTTACTGGTTATGCGCA+GGG + chr8_3:65501582-65501601 Msa1302850:intron 45.0%
! GACCTTTGTGCTGTTGTAGA+AGG + chr8_3:65501705-65501724 Msa1302850:intron 45.0%
TCCCTTCTACAACAGCACAA+AGG - chr8_3:65501710-65501729 None:intergenic 45.0%
!! GCATGGTTTTGCCTTCAAGT+TGG + chr8_3:65501737-65501756 Msa1302850:intron 45.0%
!! TTTGCCTTCAAGTTGGGGTT+TGG + chr8_3:65501744-65501763 Msa1302850:intron 45.0%
CAATCCAAACCCCAACTTGA+AGG - chr8_3:65501751-65501770 None:intergenic 45.0%
! GTATGTTTTGTCAGCTGTGG+TGG + chr8_3:65501776-65501795 Msa1302850:intron 45.0%
CGCAAAATGTGGTAGCTTAG+CGG + chr8_3:65501806-65501825 Msa1302850:intron 45.0%
CAAAATGGGGATTACGAAGG+TGG + chr8_3:65501903-65501922 Msa1302850:intron 45.0%
GAAGGTGGTCTCAATCTGTA+TGG + chr8_3:65501918-65501937 Msa1302850:intron 45.0%
!! GCAGAAAGAGCACTTCCAAT+CGG - chr8_3:65502083-65502102 None:intergenic 45.0%
GGACTTTCTCAAAACGGTCA+TGG + chr8_3:65502197-65502216 Msa1302850:intron 45.0%
TTCACAAACGTGACTGGATC+GGG - chr8_3:65502272-65502291 None:intergenic 45.0%
TGCTTGTAGTCATATGGGAC+TGG + chr8_3:65502301-65502320 Msa1302850:intron 45.0%
TTGTAGTCATATGGGACTGG+TGG + chr8_3:65502304-65502323 Msa1302850:intron 45.0%
! GGTAGAGCATTATGCTTGCA+TGG + chr8_3:65502382-65502401 Msa1302850:intron 45.0%
CTTCATTGAGCTTACCTGCA+CGG - chr8_3:65502421-65502440 None:intergenic 45.0%
GAATCTGCAACGGTTGATCA+CGG + chr8_3:65502455-65502474 Msa1302850:intron 45.0%
TTGATCACGGTCTGTGTTTG+TGG + chr8_3:65502468-65502487 Msa1302850:intron 45.0%
AACCATCGGAACTACGAACT+AGG + chr8_3:65502515-65502534 Msa1302850:intron 45.0%
GAGAGAAACTAGTGGAGCTT+GGG + chr8_3:65502549-65502568 Msa1302850:intron 45.0%
!! CTCTGGCTTTCATTATCCTC+CGG - chr8_3:65502652-65502671 None:intergenic 45.0%
GGAGGATAATGAAAGCCAGA+GGG + chr8_3:65502651-65502670 Msa1302850:intron 45.0%
GAGGATAATGAAAGCCAGAG+GGG + chr8_3:65502652-65502671 Msa1302850:intron 45.0%
AGGTTCTTTATTCACCCCTC+TGG - chr8_3:65502669-65502688 None:intergenic 45.0%
AGAGGGGTGAATAAAGAACC+TGG + chr8_3:65502668-65502687 Msa1302850:intron 45.0%
ATAAAGAACCTGGCTGTAGC+TGG + chr8_3:65502678-65502697 Msa1302850:intron 45.0%
GCTGTAGCTGGATTGAGTTA+AGG + chr8_3:65502690-65502709 Msa1302850:intron 45.0%
GGTGCCCTTTGTAATAATCC+TGG - chr8_3:65503004-65503023 None:intergenic 45.0%
GAACAAGATAAGGGCCTATC+AGG - chr8_3:65503539-65503558 None:intergenic 45.0%
! CTATCAGGATTTTCCGTTGG+AGG - chr8_3:65503652-65503671 None:intergenic 45.0%
GTCAAACGCCATCCTGTAAA+CGG - chr8_3:65503764-65503783 None:intergenic 45.0%
!! TTTTGCTGGTTGCTTATGCG+AGG + chr8_3:65503828-65503847 Msa1302850:three_prime_UTR 45.0%
CAATTACCTTCCCTGTTGGT+GGG - chr8_3:65503861-65503880 None:intergenic 45.0%
TCAATTACCTTCCCTGTTGG+TGG - chr8_3:65503862-65503881 None:intergenic 45.0%
! TTGCTGGCTATTTGGACCAT+TGG - chr8_3:65503889-65503908 None:intergenic 45.0%
! GGCTTGAAATTTTCGGTTGC+TGG - chr8_3:65503905-65503924 None:intergenic 45.0%
GTTCCTTCAGGCTCAAAGTA+AGG - chr8_3:65503994-65504013 None:intergenic 45.0%
AAAGATATGGCTGATCCTGC+TGG - chr8_3:65504080-65504099 None:intergenic 45.0%
CATTGCTGATAAGGCGGTTG+AGG + chr8_3:65501305-65501324 Msa1302850:CDS 50.0%
!! GTAGCCTTGATGATGCGGTT+CGG + chr8_3:65501514-65501533 Msa1302850:intron 50.0%
AAGTCCGAACCGCATCATCA+AGG - chr8_3:65501521-65501540 None:intergenic 50.0%
!!! TCGGACTTTTGAGTTCTCGG+GGG + chr8_3:65501533-65501552 Msa1302850:intron 50.0%
! TTACTGGTTATGCGCAGGGT+GGG + chr8_3:65501586-65501605 Msa1302850:intron 50.0%
GTAGAAGGGAGACAGATGCA+TGG + chr8_3:65501720-65501739 Msa1302850:intron 50.0%
! TAGCTTAGCGGATGCTCGTA+AGG + chr8_3:65501818-65501837 Msa1302850:intron 50.0%
! AGCTTAGCGGATGCTCGTAA+GGG + chr8_3:65501819-65501838 Msa1302850:intron 50.0%
CCAGACTGGAACAAGCTCTT+AGG - chr8_3:65501995-65502014 None:intergenic 50.0%
! CCTAAGAGCTTGTTCCAGTC+TGG + chr8_3:65501992-65502011 Msa1302850:intron 50.0%
AGTCTGGCTGCGTTAGATCA+GGG + chr8_3:65502008-65502027 Msa1302850:intron 50.0%
AGGGAAAGCAGATGCATGCT+AGG + chr8_3:65502027-65502046 Msa1302850:intron 50.0%
CGGTCATGGTAACAAAGCCT+TGG + chr8_3:65502211-65502230 Msa1302850:intron 50.0%
CAAAGCCTTGGAGCTGTTTG+AGG + chr8_3:65502223-65502242 Msa1302850:intron 50.0%
CATCTCCTCAAACAGCTCCA+AGG - chr8_3:65502231-65502250 None:intergenic 50.0%
! CATATGGGACTGGTGGATAG+AGG + chr8_3:65502311-65502330 Msa1302850:intron 50.0%
GTTGACATCTTAAGCCGTGC+AGG + chr8_3:65502404-65502423 Msa1302850:intron 50.0%
CACCTAGTTCGTAGTTCCGA+TGG - chr8_3:65502520-65502539 None:intergenic 50.0%
GGAGAGAAACTAGTGGAGCT+TGG + chr8_3:65502548-65502567 Msa1302850:intron 50.0%
GGGAAAATGTAGAGCGTGTC+CGG + chr8_3:65502630-65502649 Msa1302850:intron 50.0%
AAAATGTAGAGCGTGTCCGG+AGG + chr8_3:65502633-65502652 Msa1302850:intron 50.0%
CGGAGGATAATGAAAGCCAG+AGG + chr8_3:65502650-65502669 Msa1302850:intron 50.0%
AACTCAATCCAGCTACAGCC+AGG - chr8_3:65502689-65502708 None:intergenic 50.0%
TTGCTACAAGCCACCGCAAA+CGG - chr8_3:65503257-65503276 None:intergenic 50.0%
AGTGCATTGCCGTATCTGTC+TGG + chr8_3:65503801-65503820 Msa1302850:three_prime_UTR 50.0%
ATCATCTGGATGTCCGTCAC+AGG - chr8_3:65503926-65503945 None:intergenic 50.0%
GTGTTTACATGGAACGCTCG+TGG - chr8_3:65504184-65504203 None:intergenic 50.0%
GCTGGACAGACTCATTTGCT+TGG - chr8_3:65504206-65504225 None:intergenic 50.0%
AATGAGTCTGTCCAGCTCCA+CGG + chr8_3:65504210-65504229 Msa1302850:three_prime_UTR 50.0%
CAAATTTCATCCCGTGGAGC+TGG - chr8_3:65504224-65504243 None:intergenic 50.0%
! GTTACTGGTTATGCGCAGGG+TGG + chr8_3:65501585-65501604 Msa1302850:intron 55.0%
! TACTGGTTATGCGCAGGGTG+GGG + chr8_3:65501587-65501606 Msa1302850:intron 55.0%
CTGATCTAACGCAGCCAGAC+TGG - chr8_3:65502009-65502028 None:intergenic 55.0%
CAGTCTGGCTGCGTTAGATC+AGG + chr8_3:65502007-65502026 Msa1302850:intron 55.0%
AGGATCGTCACCCACCAACA+GGG + chr8_3:65503848-65503867 Msa1302850:three_prime_UTR 55.0%
ATGAGTCTGTCCAGCTCCAC+GGG + chr8_3:65504211-65504230 Msa1302850:three_prime_UTR 55.0%
TTATGCGCAGGGTGGGGACT+CGG + chr8_3:65501593-65501612 Msa1302850:intron 60.0%
! TGGGACTGGTGGATAGAGGC+TGG + chr8_3:65502315-65502334 Msa1302850:intron 60.0%
! GGGACTGGTGGATAGAGGCT+GGG + chr8_3:65502316-65502335 Msa1302850:intron 60.0%
GAGGATCGTCACCCACCAAC+AGG + chr8_3:65503847-65503866 Msa1302850:three_prime_UTR 60.0%
TCGTCACCCACCAACAGGGA+AGG + chr8_3:65503852-65503871 Msa1302850:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 65501246 65504458 65501246 ID=Msa1302850;Name=Msa1302850
chr8_3 mRNA 65501246 65504458 65501246 ID=Msa1302850-mRNA-1;Parent=Msa1302850;Name=Msa1302850-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0.33|0.25|0.75|0.66|0.5|4|703|87
chr8_3 exon 65501246 65501431 65501246 ID=Msa1302850-mRNA-1:exon:19899;Parent=Msa1302850-mRNA-1
chr8_3 exon 65503159 65503164 65503159 ID=Msa1302850-mRNA-1:exon:19900;Parent=Msa1302850-mRNA-1
chr8_3 exon 65503224 65503310 65503224 ID=Msa1302850-mRNA-1:exon:19901;Parent=Msa1302850-mRNA-1
chr8_3 exon 65503771 65504458 65503771 ID=Msa1302850-mRNA-1:exon:19902;Parent=Msa1302850-mRNA-1
chr8_3 CDS 65501246 65501431 65501246 ID=Msa1302850-mRNA-1:cds;Parent=Msa1302850-mRNA-1
chr8_3 CDS 65503159 65503164 65503159 ID=Msa1302850-mRNA-1:cds;Parent=Msa1302850-mRNA-1
chr8_3 CDS 65503224 65503295 65503224 ID=Msa1302850-mRNA-1:cds;Parent=Msa1302850-mRNA-1
chr8_3 three_prime_UTR 65503296 65503310 65503296 ID=Msa1302850-mRNA-1:three_prime_utr;Parent=Msa1302850-mRNA-1
chr8_3 three_prime_UTR 65503771 65504458 65503771 ID=Msa1302850-mRNA-1:three_prime_utr;Parent=Msa1302850-mRNA-1
Gene Sequence

>Msa1302850

ATGCCTGAGAGAAATACGGTTTCTTGGGCAACTATGATTTCTGGGTATGCTTCTCGTGACATTGCTGATAAGGCGGTTGAGGTTTTTGAACTTATGCGGCGTGAGGAAGAGATTCAGAATGAGTTTGCTCTCACTAGTGTTCTTAGCGCGTTGACGAGTGATGTGTTTGTTTACACTGGTAGACAGTTTCAGATCAAGAAGGAAGCCACGAGATACAAATTTCCGTTTGCGGTGGCTTGTAGCAATACAGAAGCGATGATCTAG

Protein sequence

>Msa1302850

MPERNTVSWATMISGYASRDIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQFQIKKEATRYKFPFAVACSNTEAMI*