AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0075960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075960 MtrunA17_Chr1g0171711 99.038 416 4 0 1 416 371 786 0.0 865
Msa0075960 MtrunA17_Chr7g0237271 65.301 415 139 3 2 416 375 784 0.0 561
Msa0075960 MtrunA17_Chr7g0237241 64.819 415 141 3 2 416 366 775 0.0 555
Msa0075960 MtrunA17_Chr3g0138311 56.028 423 167 6 3 416 485 897 2.98e-157 466
Msa0075960 MtrunA17_Chr1g0148791 56.542 428 159 7 3 416 488 902 8.58e-155 460
Msa0075960 MtrunA17_Chr2g0282401 52.410 332 148 5 91 416 461 788 1.08e-116 358
Msa0075960 MtrunA17_Chr4g0062881 45.564 417 186 7 3 416 79 457 2.71e-109 329
Msa0075960 MtrunA17_Chr4g0047051 43.066 274 153 3 145 416 36 308 1.39e-72 230
Msa0075960 MtrunA17_Chr4g0047071 39.929 283 156 7 145 416 3 282 1.45e-61 200
Msa0075960 MtrunA17_Chr4g0047091 41.053 285 157 5 138 416 87 366 9.25e-61 201
Msa0075960 MtrunA17_Chr4g0047061 41.224 245 137 5 175 416 90 330 2.93e-53 180
Msa0075960 MtrunA17_Chr4g0047101 40.637 251 129 6 126 369 11 248 1.47e-48 166
Msa0075960 MtrunA17_Chr4g0047111 39.189 148 66 3 223 369 7 131 4.19e-26 102
Msa0075960 MtrunA17_Chr1g0172501 27.365 296 201 9 127 415 264 552 5.01e-25 107
Msa0075960 MtrunA17_Chr3g0093681 27.365 296 201 9 127 415 264 552 7.07e-25 107
Msa0075960 MtrunA17_Chr5g0405851 26.537 309 202 10 127 415 146 449 1.31e-23 102
Msa0075960 MtrunA17_Chr5g0401661 28.205 234 152 7 133 353 431 661 5.86e-20 92.4
Msa0075960 MtrunA17_Chr5g0401661 22.910 323 210 11 127 415 323 640 1.12e-15 79.3
Msa0075960 MtrunA17_Chr5g0401661 24.314 255 174 8 142 382 399 648 1.11e-11 66.6
Msa0075960 MtrunA17_Chr4g0067151 26.360 239 162 7 147 374 86 321 2.15e-19 88.6
Msa0075960 MtrunA17_Chr4g0067151 26.552 290 189 12 147 415 35 321 2.31e-17 82.4
Msa0075960 MtrunA17_Chr5g0401671 25.641 234 158 6 133 353 341 571 3.24e-19 90.1
Msa0075960 MtrunA17_Chr5g0401671 22.741 321 211 11 127 415 235 550 1.76e-14 75.5
Msa0075960 MtrunA17_Chr5g0401671 21.649 291 211 6 137 414 304 590 3.51e-13 71.2
Msa0075960 MtrunA17_Chr8g0352821 21.753 308 229 9 117 415 160 464 1.32e-18 88.2
Msa0075960 MtrunA17_Chr4g0053651 26.496 234 156 7 133 353 324 554 1.01e-16 82.4
Msa0075960 MtrunA17_Chr4g0053651 23.171 328 215 12 120 415 211 533 3.58e-16 80.5
Msa0075960 MtrunA17_Chr4g0053651 26.562 256 167 9 142 382 292 541 1.22e-14 75.9
Msa0075960 MtrunA17_Chr1g0163021 50.000 68 29 2 309 371 21 88 1.75e-16 75.1
Msa0075960 MtrunA17_Chr7g0253861 22.997 287 205 8 142 414 58 342 9.68e-16 78.2
Msa0075960 MtrunA17_Chr2g0283891 27.193 228 153 8 202 416 83 310 7.67e-15 75.1
Msa0075960 MtrunA17_Chr2g0281451 25.000 216 156 4 152 363 29 242 1.21e-14 76.3
Msa0075960 MtrunA17_Chr2g0281451 24.390 205 148 5 217 415 8 211 3.57e-13 71.6
Msa0075960 MtrunA17_Chr1g0185501 24.825 286 200 11 142 415 30 312 1.53e-14 73.9
Msa0075960 MtrunA17_Chr3g0136971 23.986 296 197 9 128 415 339 614 3.29e-14 74.7
Msa0075960 MtrunA17_Chr3g0136971 24.891 229 163 5 139 360 419 645 1.24e-13 72.8
Msa0075960 MtrunA17_Chr8g0392701 25.210 238 159 10 153 376 30 262 2.93e-13 70.5
Msa0075960 MtrunA17_Chr8g0392701 22.660 203 151 4 147 344 71 272 2.27e-12 67.8
Msa0075960 MtrunA17_Chr3g0099061 24.585 301 180 12 125 416 250 512 3.64e-13 71.2
Msa0075960 MtrunA17_Chr1g0197551 23.507 268 169 7 132 366 44 308 5.31e-13 71.2
Msa0075960 MtrunA17_Chr6g0448921 23.529 204 151 3 217 415 9 212 9.43e-13 70.1
Msa0075960 MtrunA17_Chr6g0448921 21.239 226 136 4 152 376 30 214 3.31e-12 68.6
Msa0075960 MtrunA17_Chr6g0448921 25.253 198 143 3 145 339 65 260 4.20e-11 65.1
Msa0075960 MtrunA17_Chr1g0168391 26.738 187 131 4 153 334 238 423 1.14e-12 69.7
Msa0075960 MtrunA17_Chr4g0035611 24.427 262 160 8 139 366 51 308 2.00e-12 69.3
Msa0075960 MtrunA17_Chr2g0331981 21.633 245 178 9 141 375 17 257 2.30e-12 68.9
Msa0075960 MtrunA17_Chr8g0383711 20.339 295 220 8 131 416 10 298 2.49e-12 67.4
Msa0075960 MtrunA17_Chr4g0059031 26.178 191 125 6 239 415 34 222 2.88e-12 68.9
Msa0075960 MtrunA17_Chr4g0059031 28.488 172 111 5 133 293 54 224 6.74e-11 64.3
Msa0075960 MtrunA17_Chr1g0200901 24.638 276 192 9 149 415 91 359 3.30e-12 67.8
Msa0075960 MtrunA17_Chr1g0200901 24.911 281 187 9 147 414 131 400 6.76e-12 66.6
Msa0075960 MtrunA17_Chr2g0295791 25.481 208 147 5 207 409 155 359 7.80e-12 67.0
Msa0075960 MtrunA17_Chr3g0095501 23.860 285 196 12 146 415 277 555 1.50e-11 66.2
Msa0075960 MtrunA17_Chr4g0004241 22.422 223 159 9 163 375 39 257 2.31e-11 65.9
Msa0075960 MtrunA17_Chr4g0004241 22.000 200 134 4 147 332 65 256 2.92e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075960 AT2G32700.2 70.264 417 121 3 1 416 373 787 0.0 615
Msa0075960 AT2G32700.5 70.264 417 121 3 1 416 373 787 0.0 615
Msa0075960 AT2G32700.1 70.264 417 121 3 1 416 373 787 0.0 615
Msa0075960 AT2G32700.4 70.264 417 121 3 1 416 373 787 0.0 615
Msa0075960 AT2G32700.3 70.264 417 121 3 1 416 373 787 0.0 615
Msa0075960 AT2G32700.7 70.264 417 121 3 1 416 392 806 0.0 615
Msa0075960 AT2G32700.6 69.784 417 121 4 1 416 373 785 0.0 607
Msa0075960 AT4G32551.1 59.427 419 154 6 3 416 524 931 3.07e-169 498
Msa0075960 AT4G32551.2 59.427 419 154 6 3 416 562 969 7.62e-169 498
Msa0075960 AT2G41500.1 28.214 280 187 10 145 415 261 535 7.80e-23 101
Msa0075960 AT2G41500.1 23.529 238 174 6 184 415 258 493 5.58e-12 67.8
Msa0075960 AT2G41500.1 24.138 203 147 5 141 338 341 541 1.40e-11 66.6
Msa0075960 AT2G41500.2 28.214 280 187 10 145 415 261 535 7.80e-23 101
Msa0075960 AT2G41500.2 23.529 238 174 6 184 415 258 493 5.58e-12 67.8
Msa0075960 AT2G41500.2 24.138 203 147 5 141 338 341 541 1.40e-11 66.6
Msa0075960 AT4G02730.1 26.000 300 208 10 129 416 33 330 6.20e-21 93.6
Msa0075960 AT3G49660.1 26.582 237 162 7 147 374 79 312 1.93e-18 85.9
Msa0075960 AT3G49660.1 26.027 292 198 12 139 415 24 312 2.88e-18 85.5
Msa0075960 AT5G13480.1 22.337 291 215 8 133 415 117 404 1.75e-16 82.0
Msa0075960 AT5G13480.3 22.337 291 215 8 133 415 105 392 2.10e-16 81.6
Msa0075960 AT5G13480.4 22.337 291 215 8 133 415 105 392 2.12e-16 81.6
Msa0075960 AT5G13480.2 22.337 291 215 8 133 415 128 415 2.60e-16 81.6
Msa0075960 AT1G11160.1 23.171 246 179 6 123 363 2 242 5.83e-16 80.9
Msa0075960 AT1G11160.1 25.366 205 146 5 217 415 8 211 1.34e-13 73.6
Msa0075960 AT1G11160.4 23.171 246 179 6 123 363 2 242 5.89e-16 80.9
Msa0075960 AT1G11160.4 25.366 205 146 5 217 415 8 211 1.39e-13 73.2
Msa0075960 AT1G11160.2 23.171 246 179 6 123 363 2 242 6.55e-16 80.5
Msa0075960 AT1G11160.2 25.366 205 146 5 217 415 8 211 1.53e-13 73.2
Msa0075960 AT1G61210.3 24.691 243 171 6 152 390 29 263 7.04e-16 80.5
Msa0075960 AT1G61210.3 26.341 205 144 5 217 415 8 211 1.10e-14 77.0
Msa0075960 AT1G61210.1 24.691 243 171 6 152 390 29 263 1.07e-15 80.1
Msa0075960 AT1G61210.1 26.341 205 144 5 217 415 8 211 1.42e-14 76.6
Msa0075960 AT1G61210.2 24.691 243 171 6 152 390 29 263 1.14e-15 80.1
Msa0075960 AT1G61210.2 26.341 205 144 5 217 415 8 211 1.36e-14 76.6
Msa0075960 AT5G60940.2 22.917 336 230 12 108 416 1 334 1.32e-15 77.8
Msa0075960 AT2G43770.1 21.603 287 209 8 142 414 56 340 5.68e-15 76.3
Msa0075960 AT5G25150.1 25.764 229 161 5 139 360 418 644 6.21e-15 77.4
Msa0075960 AT5G25150.1 24.908 273 165 9 144 383 357 622 2.29e-14 75.5
Msa0075960 AT5G25150.1 29.245 212 128 7 116 307 420 629 1.67e-11 66.6
Msa0075960 AT5G25150.2 25.764 229 161 5 139 360 418 644 8.01e-15 77.0
Msa0075960 AT5G25150.2 24.908 273 165 9 144 383 357 622 2.79e-14 75.1
Msa0075960 AT5G25150.2 29.245 212 128 7 116 307 420 629 1.92e-11 66.2
Msa0075960 AT2G33340.2 27.778 216 145 5 129 334 209 423 1.12e-14 76.3
Msa0075960 AT2G33340.1 27.778 216 145 5 129 334 209 423 1.12e-14 76.3
Msa0075960 AT2G33340.3 27.778 216 145 5 129 334 209 423 1.45e-14 75.9
Msa0075960 AT5G60940.1 22.769 325 223 11 119 416 103 426 1.56e-14 75.5
Msa0075960 AT5G67320.1 23.975 317 206 10 130 415 256 568 3.02e-14 75.1
Msa0075960 AT1G48630.1 23.415 205 147 5 147 344 71 272 4.07e-13 70.5
Msa0075960 AT1G48630.1 24.051 237 163 9 153 376 30 262 1.32e-11 65.9
Msa0075960 AT5G08390.1 24.020 204 150 3 217 415 9 212 4.27e-13 71.6
Msa0075960 AT5G08390.1 26.425 193 132 8 190 376 26 214 1.17e-11 67.4
Msa0075960 AT5G08390.1 24.490 196 143 3 147 339 67 260 3.29e-11 65.9
Msa0075960 AT3G18130.1 23.902 205 146 5 147 344 71 272 4.67e-13 70.1
Msa0075960 AT3G18130.1 24.370 238 161 9 153 376 30 262 1.12e-11 65.9
Msa0075960 AT1G29260.1 25.000 228 158 8 202 416 82 309 4.85e-13 70.1
Msa0075960 AT3G15980.3 23.318 223 157 9 163 375 39 257 5.10e-13 71.6
Msa0075960 AT3G15980.6 23.318 223 157 9 163 375 39 257 5.10e-13 71.6
Msa0075960 AT3G15980.2 23.318 223 157 9 163 375 39 257 5.10e-13 71.6
Msa0075960 AT3G15980.4 23.318 223 157 9 163 375 39 257 5.10e-13 71.6
Msa0075960 AT3G15980.7 23.318 223 157 9 163 375 39 257 6.08e-13 71.2
Msa0075960 AT3G15980.5 23.318 223 157 9 163 375 39 257 6.12e-13 71.2
Msa0075960 AT3G15980.1 23.318 223 157 9 163 375 39 257 6.74e-13 71.2
Msa0075960 AT5G23430.3 24.390 205 148 5 217 415 9 212 4.17e-12 68.6
Msa0075960 AT5G23430.3 25.000 196 142 3 147 339 67 260 1.67e-11 66.6
Msa0075960 AT5G23430.3 22.467 227 132 6 152 376 30 214 1.80e-11 66.6
Msa0075960 AT5G23430.2 24.390 205 148 5 217 415 9 212 4.17e-12 68.6
Msa0075960 AT5G23430.2 25.000 196 142 3 147 339 67 260 1.67e-11 66.6
Msa0075960 AT5G23430.2 22.467 227 132 6 152 376 30 214 1.80e-11 66.6
Msa0075960 AT5G23430.1 24.390 205 148 5 217 415 9 212 4.18e-12 68.6
Msa0075960 AT5G23430.1 25.000 196 142 3 147 339 67 260 1.73e-11 66.6
Msa0075960 AT5G23430.1 22.467 227 132 6 152 376 30 214 1.81e-11 66.6
Msa0075960 AT1G73720.1 24.080 299 183 9 125 416 249 510 5.03e-12 68.2
Msa0075960 AT2G21390.1 24.615 260 160 8 140 366 52 308 6.13e-12 68.2
Msa0075960 AT1G52360.4 22.422 223 159 9 163 375 39 257 1.54e-11 67.0
Msa0075960 AT1G52360.4 22.000 200 134 4 147 332 65 256 3.79e-11 65.9
Msa0075960 AT1G52360.1 22.422 223 159 9 163 375 39 257 1.54e-11 67.0
Msa0075960 AT1G52360.1 22.000 200 134 4 147 332 65 256 3.79e-11 65.9
Msa0075960 AT1G18080.1 22.927 205 149 5 147 344 71 273 1.66e-11 65.5
Msa0075960 AT1G18080.1 25.114 219 147 7 153 357 30 245 4.64e-11 64.3
Msa0075960 AT1G52360.3 22.624 221 157 9 165 375 41 257 1.68e-11 66.6
Msa0075960 AT1G52360.3 22.000 200 134 4 147 332 65 256 4.02e-11 65.5
Msa0075960 AT1G52360.2 22.422 223 159 9 163 375 83 301 2.25e-11 66.2
Msa0075960 AT1G52360.2 22.000 200 134 4 147 332 109 300 4.13e-11 65.5
Msa0075960 AT1G04510.1 24.211 190 135 3 153 334 236 424 3.96e-11 65.1
Msa0075960 AT1G04510.2 24.211 190 135 3 153 334 236 424 3.99e-11 65.1
Msa0075960 AT5G52820.1 24.825 286 159 9 180 415 108 387 6.34e-11 64.3

Find 115 sgRNAs with CRISPR-Local

Find 634 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAAGGGTTTGATGATTTA+TGG 0.148294 1_2:-51666750 Msa0075960:CDS
CAGGATGGCTTGGAACATTT+TGG 0.166410 1_2:-51666125 Msa0075960:CDS
AGATTACTCGTAAAATAAAT+TGG 0.211663 1_2:-51658300 Msa0075960:three_prime_UTR
GGATACAAATGGAGATTATT+TGG 0.212936 1_2:-51659216 Msa0075960:CDS
GGTGATGGAAAGGACTTATT+TGG 0.218195 1_2:-51666050 Msa0075960:CDS
GCAGCCAAGCCTTTCTTTGC+AGG 0.229828 1_2:-51659724 Msa0075960:intron
CTTGTCATTAGGTTGTTCTT+TGG 0.260725 1_2:-51662731 Msa0075960:intron
TTGATACAACTGTGCGGCTT+TGG 0.280722 1_2:-51662605 Msa0075960:CDS
CACCTTCTGGCCGCAGCATC+TGG 0.284735 1_2:-51659440 Msa0075960:CDS
TATTATAGAATAACCGAAAA+AGG 0.301943 1_2:-51666920 None:intergenic
TACTCCAACCTCTTGGTTAT+CGG 0.325693 1_2:-51659083 Msa0075960:CDS
GCCAAGGAGTGGACACCTTC+TGG 0.333667 1_2:-51659453 Msa0075960:CDS
GTTGCCAGCTGAGTTGAATT+TGG 0.340739 1_2:+51662636 None:intergenic
CAGGCAAATGCACTCATTAC+AGG 0.344223 1_2:-51659384 Msa0075960:intron
AGGAAAGGGCCTACATCTTC+AGG 0.354520 1_2:-51666900 Msa0075960:CDS
CGCTATATGCCTGCAAAGAA+AGG 0.364543 1_2:+51659715 None:intergenic
GGGAGGTACATTGTGTATGC+TGG 0.368192 1_2:-51659238 Msa0075960:CDS
TGCTGTCATTTCTCTTCAGA+TGG 0.369775 1_2:-51665860 Msa0075960:CDS
TGATTCCACATTATCATCTA+AGG 0.380642 1_2:+51666091 None:intergenic
TGATACAACTGTGCGGCTTT+GGG 0.391565 1_2:-51662604 Msa0075960:CDS
GAATCTGTAGCATGCTCGGC+AGG 0.396589 1_2:+51666011 None:intergenic
ATAACAATGAGATTCGCTTC+TGG 0.401253 1_2:-51659623 Msa0075960:CDS
GTCAAGAATCTGTCAAAGTT+TGG 0.406905 1_2:-51659184 Msa0075960:CDS
CTGTCACTGGTGATTGTGCT+AGG 0.409504 1_2:+51658508 None:intergenic
ATGATAAGTCGGTAAAGATA+TGG 0.410149 1_2:-51658464 Msa0075960:CDS
GGCAACTTGCAGAATGTTGC+TGG 0.416007 1_2:-51666777 Msa0075960:CDS
TCACCAGGAGTATGAATAGA+TGG 0.426192 1_2:+51666816 None:intergenic
ATTTCCTGTACCAGTACTAT+TGG 0.429601 1_2:+51666872 None:intergenic
ACCAAGAGGTTGGAGTAACT+TGG 0.432164 1_2:+51659089 None:intergenic
AAAGTTTGGTCACTTGCCTC+TGG 0.432801 1_2:-51659170 Msa0075960:CDS
TTGATTTACCAGCTGGTTTG+TGG 0.439336 1_2:+51666698 None:intergenic
GTTGACGGTTGAGAATTAGA+AGG 0.441908 1_2:+51666840 None:intergenic
ATGTATTTCTAGGGACACTC+TGG 0.444218 1_2:-51659260 Msa0075960:intron
GCCAGAAGGTGTCCACTCCT+TGG 0.444368 1_2:+51659452 None:intergenic
GTGATGGAAAGGACTTATTT+GGG 0.454425 1_2:-51666049 Msa0075960:CDS
CATGCTACAGATTCTTCAAA+AGG 0.454429 1_2:-51666002 Msa0075960:intron
GATTACTCGTAAAATAAATT+GGG 0.458908 1_2:-51658299 Msa0075960:three_prime_UTR
CTTCTTGTCATGTCCAGCAC+TGG 0.468790 1_2:+51665826 None:intergenic
CCCAAGTTACTCCAACCTCT+TGG 0.475839 1_2:-51659090 Msa0075960:CDS
ACTTATTTGGGACGTTGAAA+CGG 0.485085 1_2:-51666037 Msa0075960:CDS
ATAATAACAGTGTGTTCCTC+TGG 0.488727 1_2:+51662678 None:intergenic
ACCATAAATCATCAAACCCT+TGG 0.489033 1_2:+51666749 None:intergenic
TACACCCTCATGAGCTGGTA+TGG 0.493721 1_2:+51658539 None:intergenic
CTTGGTTATCGGAGGATACC+AGG 0.501060 1_2:-51659072 Msa0075960:intron
TCTTTGATGTTGAGACTGAC+AGG 0.507574 1_2:-51659403 Msa0075960:CDS
TGAAGAATCTGTAGCATGCT+CGG 0.510849 1_2:+51666007 None:intergenic
GCTGTCATTTCTCTTCAGAT+GGG 0.513862 1_2:-51665859 Msa0075960:CDS
CAGACCAAATTCAACTCAGC+TGG 0.516977 1_2:-51662640 Msa0075960:CDS
TCAGGAGCTGCCAATAGTAC+TGG 0.519807 1_2:-51666882 Msa0075960:CDS
TTGATGATTTATGGTACTGA+AGG 0.523817 1_2:-51666741 Msa0075960:CDS
TGCCAGATGCTGCGGCCAGA+AGG 0.525651 1_2:+51659438 None:intergenic
CTTTACCGACTTATCATGAC+TGG 0.527534 1_2:+51658470 None:intergenic
TCCTGGTGATGGAGTTGCTA+TGG 0.529700 1_2:-51666802 Msa0075960:CDS
TGCATCTTCCACAAACCAGC+TGG 0.530085 1_2:-51666706 Msa0075960:intron
AATCTCATTGTTATCATCAC+AGG 0.531071 1_2:+51659632 None:intergenic
GGGAAATTATTAGCCAGTGC+TGG 0.533775 1_2:-51665839 Msa0075960:CDS
CTAGCACAATCACCAGTGAC+AGG 0.536452 1_2:-51658507 Msa0075960:CDS
GAAGCAACCATCCCTGTCAC+TGG 0.538448 1_2:+51658495 None:intergenic
GTATGAATAGATGGAGTTGA+CGG 0.541616 1_2:+51666825 None:intergenic
TGTGTATGCTGGGATACAAA+TGG 0.541891 1_2:-51659227 Msa0075960:CDS
GCTGCCAATAGTACTGGTAC+AGG 0.543266 1_2:-51666876 Msa0075960:CDS
ACTTACAGTCATTGGAGCTA+TGG 0.548084 1_2:-51658587 Msa0075960:intron
TCTATTCATACTCCTGGTGA+TGG 0.551044 1_2:-51666813 Msa0075960:CDS
TCATTTCTCTCACAAGATGA+TGG 0.552374 1_2:-51666071 Msa0075960:CDS
AGAATGAAACATGTTTCCAC+TGG 0.557652 1_2:+51659124 None:intergenic
GGAGGTACATTGTGTATGCT+GGG 0.558903 1_2:-51659237 Msa0075960:CDS
TTTCTTAGGGTGGAAATCAA+GGG 0.559171 1_2:+51659671 None:intergenic
TCCTCCGATAACCAAGAGGT+TGG 0.560162 1_2:+51659079 None:intergenic
TATGCCTGCAAAGAAAGGCT+TGG 0.561064 1_2:+51659720 None:intergenic
TATCATCACAGGAACAGAAA+AGG 0.561084 1_2:+51659643 None:intergenic
TGTATTTCTAGGGACACTCT+GGG 0.561169 1_2:-51659259 Msa0075960:intron
ACTCCATCTATTCATACTCC+TGG 0.561698 1_2:-51666819 Msa0075960:CDS
CCAAGAGGTTGGAGTAACTT+GGG 0.561716 1_2:+51659090 None:intergenic
TATGACCATACCAGCTCATG+AGG 0.566508 1_2:-51658544 Msa0075960:CDS
GATATTACACCCTCATGAGC+TGG 0.567462 1_2:+51658534 None:intergenic
TTAGGTTGTTCTTTGGAACA+TGG 0.568619 1_2:-51662724 Msa0075960:intron
TGTCACTGGTGATTGTGCTA+GGG 0.568713 1_2:+51658509 None:intergenic
CTCTCACAAGATGATGGTGA+TGG 0.571976 1_2:-51666065 Msa0075960:CDS
GTCATTGGAGCTATGGCACA+TGG 0.572018 1_2:-51658580 Msa0075960:CDS
ATTTATGGTACTGAAGGAGC+AGG 0.572820 1_2:-51666735 Msa0075960:CDS
CACAACATTGCCAGATGCTG+CGG 0.578567 1_2:+51659430 None:intergenic
ACAAGATGATGGTGATGGAA+AGG 0.579632 1_2:-51666060 Msa0075960:CDS
AATTACAACTAAGTTTCAAG+TGG 0.581227 1_2:+51658250 None:intergenic
GAATGTTGCTGGTGTATCCA+AGG 0.582149 1_2:-51666766 Msa0075960:CDS
ATTCATGAACTTAATTCCAG+TGG 0.584603 1_2:-51659140 Msa0075960:CDS
TTGGCAGCTCCTGAAGATGT+AGG 0.588055 1_2:+51666891 None:intergenic
CACAGGTGAGGTTTCAGCCA+AGG 0.590433 1_2:-51659469 Msa0075960:CDS
TCCAACCTCTTGGTTATCGG+AGG 0.596783 1_2:-51659080 Msa0075960:CDS
GCCATAGCAACTCCATCACC+AGG 0.598806 1_2:+51666801 None:intergenic
TTGACGGTTGAGAATTAGAA+GGG 0.600579 1_2:+51666841 None:intergenic
AATGTTGCTGGTGTATCCAA+GGG 0.601732 1_2:-51666765 Msa0075960:CDS
GTGAGGTTTCAGCCAAGGAG+TGG 0.601900 1_2:-51659464 Msa0075960:CDS
TATAGAACTAACTTCACTGA+AGG 0.604171 1_2:+51665907 None:intergenic
CTTTCTTTGCAGGCATATAG+CGG 0.607957 1_2:-51659714 Msa0075960:CDS
GGTGATGGAGTTGCTATGGC+GGG 0.608534 1_2:-51666798 Msa0075960:CDS
AGTTCTATACGCAAAAGCAA+TGG 0.612132 1_2:-51665893 Msa0075960:CDS
TGGTGATGGAGTTGCTATGG+CGG 0.619692 1_2:-51666799 Msa0075960:CDS
TTCTGCCAGTCATGATAAGT+CGG 0.620023 1_2:-51658475 Msa0075960:CDS
CAGTGCTGGACATGACAAGA+AGG 0.620953 1_2:-51665825 Msa0075960:intron
GAAAACGCAGAGCACGCCAG+AGG 0.631839 1_2:-51662694 Msa0075960:CDS
AGTAATCTACATCAACAACT+TGG 0.632603 1_2:+51658315 None:intergenic
AATCTGTAGCATGCTCGGCA+GGG 0.649746 1_2:+51666012 None:intergenic
TAGCACAATCACCAGTGACA+GGG 0.654726 1_2:-51658506 Msa0075960:CDS
ACTGGTACAGGAAATACACT+TGG 0.661183 1_2:-51666864 Msa0075960:CDS
ACAATCACCAGTGACAGGGA+TGG 0.671107 1_2:-51658502 Msa0075960:CDS
TTCATGAATGCAATCACCAG+AGG 0.679527 1_2:+51659154 None:intergenic
TGGCTCCTTAGATGATAATG+TGG 0.680795 1_2:-51666096 Msa0075960:CDS
AGGGAGGATCTACACAGGTG+AGG 0.687544 1_2:-51659481 Msa0075960:CDS
TATGGTACTGAAGGAGCAGG+CGG 0.702719 1_2:-51666732 Msa0075960:CDS
ATGACCATACCAGCTCATGA+GGG 0.705801 1_2:-51658543 Msa0075960:CDS
CAAGCAGGGAGGATCTACAC+AGG 0.707367 1_2:-51659486 Msa0075960:intron
CTTCGTTTGATACAACTGTG+CGG 0.708138 1_2:-51662611 Msa0075960:CDS
TTTCTAGGGACACTCTGGGG+AGG 0.715436 1_2:-51659255 Msa0075960:intron
GGTATCCTCCGATAACCAAG+AGG 0.726567 1_2:+51659075 None:intergenic
GTATTTCTAGGGACACTCTG+GGG 0.781503 1_2:-51659258 Msa0075960:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATAATAATAATAAAA+AGG + chr1_2:51659668-51659687 None:intergenic 0.0%
!! GTTTATTATATTATATTATG+TGG - chr1_2:51659447-51659466 Msa0075960:CDS 10.0%
!! TTATTATATTATATTATGTG+GGG - chr1_2:51659449-51659468 Msa0075960:CDS 10.0%
!! ATTAATCAATACAATAAATA+GGG - chr1_2:51659529-51659548 Msa0075960:intron 10.0%
!!! AAAAAATGCATATTTTTTTA+TGG + chr1_2:51660368-51660387 None:intergenic 10.0%
!! AAATATAGTATATACTATAT+AGG - chr1_2:51662937-51662956 Msa0075960:intron 10.0%
!! AAATATAGTATATACTATAT+AGG - chr1_2:51662937-51662956 Msa0075960:intron 10.0%
!! TAAATATAAATAGATATGAA+AGG + chr1_2:51665881-51665900 None:intergenic 10.0%
!! AGATAAAAAAGTTATTATTT+AGG - chr1_2:51666481-51666500 Msa0075960:intron 10.0%
!! GATTAATCAATACAATAAAT+AGG - chr1_2:51659528-51659547 Msa0075960:intron 15.0%
!! GTAATATTAATTATCATATC+AGG + chr1_2:51660043-51660062 None:intergenic 15.0%
!!! CATTTGTTTTTAATATGATT+AGG - chr1_2:51660498-51660517 Msa0075960:intron 15.0%
!!! TAGAATTGAATCAATTTTAA+AGG - chr1_2:51661543-51661562 Msa0075960:intron 15.0%
!!! AGAATTGAATCAATTTTAAA+GGG - chr1_2:51661544-51661563 Msa0075960:intron 15.0%
!! TAATATTGATACATTAAGTA+TGG - chr1_2:51661580-51661599 Msa0075960:intron 15.0%
!! TACATTTATTTATGTTACAA+AGG - chr1_2:51661691-51661710 Msa0075960:intron 15.0%
!!! TAAAAGTTTTAACAAAACTA+GGG + chr1_2:51662029-51662048 None:intergenic 15.0%
!!! TTAAAAGTTTTAACAAAACT+AGG + chr1_2:51662030-51662049 None:intergenic 15.0%
!!! TAAAACTTTTAAAAGTAACA+TGG - chr1_2:51662038-51662057 Msa0075960:intron 15.0%
!! TTTATAAGTTTAAATTGGTA+TGG + chr1_2:51662330-51662349 None:intergenic 15.0%
!! ATCTGTTTATAAGTTTAAAT+TGG + chr1_2:51662335-51662354 None:intergenic 15.0%
!! TATTCATTATATATAGTTGA+TGG - chr1_2:51663045-51663064 Msa0075960:intron 15.0%
!! AGAAAAAATATATTGTTGAT+TGG + chr1_2:51663531-51663550 None:intergenic 15.0%
!! ACTTTAGATTTATTGAAATT+CGG + chr1_2:51665824-51665843 None:intergenic 15.0%
!! TTAGAATTATATGTATTTCT+AGG - chr1_2:51665898-51665917 Msa0075960:CDS 15.0%
!!! TAGAATTATATGTATTTCTA+GGG - chr1_2:51665899-51665918 Msa0075960:CDS 15.0%
!!! AAAGTTATTATTTAGGATAT+TGG - chr1_2:51666488-51666507 Msa0075960:intron 15.0%
!! ATTTGATGTAAGAAATGTTA+TGG - chr1_2:51658628-51658647 Msa0075960:intron 20.0%
!!! ATAATATTCTTGATTTGCAA+AGG - chr1_2:51658888-51658907 Msa0075960:intron 20.0%
!! AAGATTCAGCTAAAAATATA+GGG + chr1_2:51658966-51658985 None:intergenic 20.0%
!! TAAGATTCAGCTAAAAATAT+AGG + chr1_2:51658967-51658986 None:intergenic 20.0%
!!! ATATTTTTAGCTGAATCTTA+TGG - chr1_2:51658967-51658986 Msa0075960:intron 20.0%
!! CGTAAATAACAAAAATCTAT+AGG + chr1_2:51659212-51659231 None:intergenic 20.0%
!!! TCTTTAATTTACTGATTTAG+AGG - chr1_2:51659381-51659400 Msa0075960:intron 20.0%
!! TAGTTAATCCTCAATTAATA+GGG - chr1_2:51659503-51659522 Msa0075960:intron 20.0%
!!! ATCTTTGATTTAGAATTCAT+TGG + chr1_2:51659632-51659651 None:intergenic 20.0%
!!! CTAAATCAAAGATCTAAAAT+TGG - chr1_2:51659639-51659658 Msa0075960:CDS 20.0%
!! TAGAAAAACAAAAAGTGAAT+AGG + chr1_2:51659994-51660013 None:intergenic 20.0%
!!! TTTTTCTAATCCTTAGTTTT+TGG - chr1_2:51660006-51660025 Msa0075960:intron 20.0%
!!! CAAATTCAATTTTTTTCCAA+TGG - chr1_2:51660153-51660172 Msa0075960:intron 20.0%
!! TTTATGATTATATCTTCCAT+TGG + chr1_2:51660172-51660191 None:intergenic 20.0%
!! TTGATTCTTAATATTAACAG+AGG + chr1_2:51660759-51660778 None:intergenic 20.0%
!!! ATAATGATGAAGATTTTGAA+GGG - chr1_2:51661068-51661087 Msa0075960:intron 20.0%
!! ATTCTATCAATCTAGTAAAA+AGG + chr1_2:51661180-51661199 None:intergenic 20.0%
!!! GAATTGAATCAATTTTAAAG+GGG - chr1_2:51661545-51661564 Msa0075960:intron 20.0%
!! ATTGTTAGACAATAGAATAA+AGG + chr1_2:51661717-51661736 None:intergenic 20.0%
!!! AGGTTTAATATTTTTTAGAC+AGG + chr1_2:51661816-51661835 None:intergenic 20.0%
!! TTAACACCATCAAATAATAT+TGG - chr1_2:51661993-51662012 Msa0075960:intron 20.0%
!! AAATGAAAGTGACAAATTTA+CGG + chr1_2:51662358-51662377 None:intergenic 20.0%
!!! TTACTGTTACACTTTTTTTT+TGG - chr1_2:51662733-51662752 Msa0075960:intron 20.0%
!!! TTATGAAAACTTACTTGTTT+TGG - chr1_2:51663105-51663124 Msa0075960:intron 20.0%
!!! GAAATATAGGTTTTAGTAAA+TGG + chr1_2:51663170-51663189 None:intergenic 20.0%
!!! TTTTTCATGATGTGAAATAT+AGG + chr1_2:51663183-51663202 None:intergenic 20.0%
!! TATTTCACATCATGAAAAAA+AGG - chr1_2:51663184-51663203 Msa0075960:intron 20.0%
!!! TGAGTTGGTTTTTTTTTTAA+AGG - chr1_2:51663248-51663267 Msa0075960:intron 20.0%
!!! ATATTTTTTCTTCGATGATT+TGG - chr1_2:51663540-51663559 Msa0075960:intron 20.0%
!!! TATTTTTTCTTCGATGATTT+GGG - chr1_2:51663541-51663560 Msa0075960:intron 20.0%
!! TATTCACATTATAAATGTAG+TGG - chr1_2:51663723-51663742 Msa0075960:intron 20.0%
!!! CTTTTTTAATATTTGTCCTT+TGG - chr1_2:51665294-51665313 Msa0075960:intron 20.0%
!! ATTATAACACTAATTACCAA+AGG + chr1_2:51665313-51665332 None:intergenic 20.0%
!!! AGTTTACTACTATATTTTTC+AGG - chr1_2:51666144-51666163 Msa0075960:intron 20.0%
!!! CAAATTTTGTTGAATTATTC+TGG - chr1_2:51666750-51666769 Msa0075960:CDS 20.0%
!! AGATTACTCGTAAAATAAAT+TGG - chr1_2:51666868-51666887 Msa0075960:CDS 20.0%
!! GATTACTCGTAAAATAAATT+GGG - chr1_2:51666869-51666888 Msa0075960:CDS 20.0%
! AATACATTAATAATTCTCCC+CGG + chr1_2:51658522-51658541 None:intergenic 25.0%
! TATTTGTAAGCAACATATGT+AGG + chr1_2:51658548-51658567 None:intergenic 25.0%
! CTTACATCAAATGTTTCATT+TGG + chr1_2:51658620-51658639 None:intergenic 25.0%
! TACTCCTACTTTAATATACA+GGG + chr1_2:51658661-51658680 None:intergenic 25.0%
! ATACTCCTACTTTAATATAC+AGG + chr1_2:51658662-51658681 None:intergenic 25.0%
! TGTATATTAAAGTAGGAGTA+TGG - chr1_2:51658661-51658680 Msa0075960:intron 25.0%
!! GTATATTAAAGTAGGAGTAT+GGG - chr1_2:51658662-51658681 Msa0075960:intron 25.0%
!! TATATTAAAGTAGGAGTATG+GGG - chr1_2:51658663-51658682 Msa0075960:intron 25.0%
! AATCATTTGCCAAAAATGAA+AGG + chr1_2:51658699-51658718 None:intergenic 25.0%
!!! TTAATTGTTTTTACTCTGCA+TGG - chr1_2:51658825-51658844 Msa0075960:intron 25.0%
!!! TAATTGTTTTTACTCTGCAT+GGG - chr1_2:51658826-51658845 Msa0075960:intron 25.0%
! TTCAGTCTTAGTATAACTAT+TGG + chr1_2:51659422-51659441 None:intergenic 25.0%
! GAATGTACATTTATATAAGC+AGG - chr1_2:51659473-51659492 Msa0075960:CDS 25.0%
! CTATTAATTGAGGATTAACT+AGG + chr1_2:51659504-51659523 None:intergenic 25.0%
! CTAGTTAATCCTCAATTAAT+AGG - chr1_2:51659502-51659521 Msa0075960:intron 25.0%
! TTAATCTTCCCTATTAATTG+AGG + chr1_2:51659514-51659533 None:intergenic 25.0%
! ATCAATACAATAAATAGGGA+AGG - chr1_2:51659533-51659552 Msa0075960:intron 25.0%
! AATAGGATAGGATTAGAAAT+AGG + chr1_2:51659977-51659996 None:intergenic 25.0%
! AAACAAAAAGTGAATAGGAT+AGG + chr1_2:51659989-51660008 None:intergenic 25.0%
! ACTCATATAATCTTGAAACT+AGG - chr1_2:51660086-51660105 Msa0075960:intron 25.0%
! CCTGTTACATATTATTTCAA+TGG + chr1_2:51660247-51660266 None:intergenic 25.0%
! CCATTGAAATAATATGTAAC+AGG - chr1_2:51660244-51660263 Msa0075960:intron 25.0%
! CTGTCATAAATTAGTTAAGA+CGG - chr1_2:51660599-51660618 Msa0075960:intron 25.0%
! CTTCAAAATCTTCATCATTA+TGG + chr1_2:51661069-51661088 None:intergenic 25.0%
!! CATAATGATGAAGATTTTGA+AGG - chr1_2:51661067-51661086 Msa0075960:intron 25.0%
! GATAACTTCATGTAATCAAT+TGG + chr1_2:51661113-51661132 None:intergenic 25.0%
! ATCAATCTAGTAAAAAGGAA+AGG + chr1_2:51661175-51661194 None:intergenic 25.0%
! AGTTGAAGAAAGGAAATTAT+AGG + chr1_2:51661230-51661249 None:intergenic 25.0%
!!! AGGAAATCTTTTAGTTTATG+AGG - chr1_2:51661414-51661433 Msa0075960:intron 25.0%
!! ATTGATTCAATTCTATGACA+TGG + chr1_2:51661538-51661557 None:intergenic 25.0%
! TACATTAAGTATGGTAAAGA+AGG - chr1_2:51661589-51661608 Msa0075960:intron 25.0%
!! CAGAATATAAGGATCTTTTA+GGG + chr1_2:51661940-51661959 None:intergenic 25.0%
!! CTACTATTCTTTAGTTCATT+TGG + chr1_2:51661969-51661988 None:intergenic 25.0%
!!! AACTTTTAAAAGTAACATGG+TGG - chr1_2:51662041-51662060 Msa0075960:intron 25.0%
!!! CTTGATTATTTAAGAGCATT+AGG + chr1_2:51662092-51662111 None:intergenic 25.0%
! TAATCAAGAATATATTCCAC+AGG - chr1_2:51662104-51662123 Msa0075960:intron 25.0%
! CGATTTAATTCTGTATTCAT+CGG - chr1_2:51662189-51662208 Msa0075960:intron 25.0%
!!! TTTTTAAAGGTTTCTGAATC+AGG - chr1_2:51663261-51663280 Msa0075960:intron 25.0%
! AAAACTAGATGTATTACAGA+AGG + chr1_2:51663508-51663527 None:intergenic 25.0%
! AAAACTCAGATGGTAAATAA+AGG - chr1_2:51664000-51664019 Msa0075960:intron 25.0%
! AAACTCAGATGGTAAATAAA+GGG - chr1_2:51664001-51664020 Msa0075960:intron 25.0%
!! TTCCATTTGTGTAATTGTTT+TGG - chr1_2:51664878-51664897 Msa0075960:intron 25.0%
!! TCCATTTGTGTAATTGTTTT+GGG - chr1_2:51664879-51664898 Msa0075960:intron 25.0%
! GTAAACAGAAATTAACCAAT+TGG - chr1_2:51665150-51665169 Msa0075960:intron 25.0%
!!! GAAGTTGTAATTTTAATACG+AGG + chr1_2:51665207-51665226 None:intergenic 25.0%
! TGGATAAAACTTCTATCAAA+GGG - chr1_2:51665236-51665255 Msa0075960:intron 25.0%
! ATTAGTGTTATAATGAAACC+AGG - chr1_2:51665319-51665338 Msa0075960:intron 25.0%
!! GACGTTTCTATTTCAAATTT+TGG - chr1_2:51665382-51665401 Msa0075960:intron 25.0%
!!! AGAAAAGGTCATTTTTCTTA+GGG + chr1_2:51665513-51665532 None:intergenic 25.0%
! CTCATTAAATTTATCAAGCA+GGG - chr1_2:51665668-51665687 Msa0075960:intron 25.0%
!!! TATGGTCATACATTTGTTTT+CGG + chr1_2:51666614-51666633 None:intergenic 25.0%
! TTGATGATTTATGGTACTGA+AGG - chr1_2:51658427-51658446 Msa0075960:three_prime_UTR 30.0%
!! ATTTTGTAACTTGCATTACC+CGG - chr1_2:51658500-51658519 Msa0075960:CDS 30.0%
ATACATTAATAATTCTCCCC+GGG + chr1_2:51658521-51658540 None:intergenic 30.0%
!!! GTTCATTTTGTTTTAGTTGC+AGG - chr1_2:51659024-51659043 Msa0075960:intron 30.0%
!!! ATTTTGTTTTAGTTGCAGGA+TGG - chr1_2:51659028-51659047 Msa0075960:intron 30.0%
TGATTCCACATTATCATCTA+AGG + chr1_2:51659080-51659099 None:intergenic 30.0%
! GTTATTTACGTTGACTGTAT+AGG - chr1_2:51659222-51659241 Msa0075960:CDS 30.0%
TATAGAACTAACTTCACTGA+AGG + chr1_2:51659264-51659283 None:intergenic 30.0%
TTAATTGAGGATTAACTAGG+AGG + chr1_2:51659501-51659520 None:intergenic 30.0%
AGACAATGATAAGACTGATA+TGG + chr1_2:51659842-51659861 None:intergenic 30.0%
!! TTCTAATCCTTAGTTTTTGG+TGG - chr1_2:51660009-51660028 Msa0075960:intron 30.0%
GTGTTCAAAAACTATTCAGT+AGG + chr1_2:51660065-51660084 None:intergenic 30.0%
ACCTATGTTTGTTCAATCAA+TGG - chr1_2:51660126-51660145 Msa0075960:intron 30.0%
! TCCATTGATTGAACAAACAT+AGG + chr1_2:51660130-51660149 None:intergenic 30.0%
GTATATGATTCCATCTTAAC+AGG - chr1_2:51660533-51660552 Msa0075960:intron 30.0%
!! TGAGTTTTAACGCATAGAAA+AGG - chr1_2:51660574-51660593 Msa0075960:intron 30.0%
ATGTATTGTGTGACAGTATA+TGG + chr1_2:51660698-51660717 None:intergenic 30.0%
AAGATGCTATATTGTCAAGA+AGG - chr1_2:51660968-51660987 Msa0075960:intron 30.0%
! ATCTTTTTGCAAGCATTTTG+TGG - chr1_2:51661002-51661021 Msa0075960:intron 30.0%
!! AAGATTTTGAAGGGAAAAAG+AGG - chr1_2:51661077-51661096 Msa0075960:intron 30.0%
TGAAATAACTGCCATGTAAA+TGG - chr1_2:51661265-51661284 Msa0075960:intron 30.0%
GAAATAACTGCCATGTAAAT+GGG - chr1_2:51661266-51661285 Msa0075960:intron 30.0%
ATGCCTTTACAAGTAAAAAC+CGG - chr1_2:51661354-51661373 Msa0075960:intron 30.0%
!!! ATACCGGTTTTTACTTGTAA+AGG + chr1_2:51661360-51661379 None:intergenic 30.0%
CTCTCATATAGACAATATAC+CGG + chr1_2:51661383-51661402 None:intergenic 30.0%
GGTATATTGTCTATATGAGA+GGG - chr1_2:51661382-51661401 Msa0075960:intron 30.0%
TTCTATGACATGGCAAAATA+AGG + chr1_2:51661528-51661547 None:intergenic 30.0%
!! TAGACAGGATTCTTTTGATT+TGG + chr1_2:51661801-51661820 None:intergenic 30.0%
TAACAGATTGGATTTATCTG+AGG + chr1_2:51661836-51661855 None:intergenic 30.0%
!!! TCCAATCTGTTATTTTGAAG+TGG - chr1_2:51661844-51661863 Msa0075960:intron 30.0%
TCCACTTCAAAATAACAGAT+TGG + chr1_2:51661848-51661867 None:intergenic 30.0%
!! TTTCGTTTTTACCTTGGATT+TGG + chr1_2:51661884-51661903 None:intergenic 30.0%
CTTTGAATCTACTTTGGTAA+GGG + chr1_2:51661907-51661926 None:intergenic 30.0%
! GCAGAATATAAGGATCTTTT+AGG + chr1_2:51661941-51661960 None:intergenic 30.0%
! GTGGAACTTTTATAAAACAG+AGG - chr1_2:51662060-51662079 Msa0075960:intron 30.0%
AAAGAACAACCTAATGACAA+GGG + chr1_2:51662438-51662457 None:intergenic 30.0%
!! TCTCTTTTAACTGTTAGTGT+TGG - chr1_2:51662616-51662635 Msa0075960:CDS 30.0%
AGTAAACTTATAATCCCCAT+GGG + chr1_2:51662714-51662733 None:intergenic 30.0%
AAGTAAACTTATAATCCCCA+TGG + chr1_2:51662715-51662734 None:intergenic 30.0%
TTCATTTCTTACAGTGAGTA+GGG + chr1_2:51662874-51662893 None:intergenic 30.0%
ATTCATTTCTTACAGTGAGT+AGG + chr1_2:51662875-51662894 None:intergenic 30.0%
AACTCAAACTAGCCAAATAA+GGG + chr1_2:51663234-51663253 None:intergenic 30.0%
TTAAGGAAGAATTGCTTATG+TGG - chr1_2:51663334-51663353 Msa0075960:intron 30.0%
! CATTTTCAGTTGAACCTTTT+AGG - chr1_2:51663419-51663438 Msa0075960:intron 30.0%
CTTTAATGAGCAATAGTTGT+AGG - chr1_2:51663467-51663486 Msa0075960:intron 30.0%
TCACGATAAATTGACAATAG+AGG - chr1_2:51663881-51663900 Msa0075960:intron 30.0%
GAACACAAAACTAATGCATA+AGG - chr1_2:51663903-51663922 Msa0075960:intron 30.0%
! GAGCTTTTACATCAGTTTAT+GGG + chr1_2:51663956-51663975 None:intergenic 30.0%
! AGAGCTTTTACATCAGTTTA+TGG + chr1_2:51663957-51663976 None:intergenic 30.0%
TAAACTGATGTAAAAGCTCT+AGG - chr1_2:51663957-51663976 Msa0075960:intron 30.0%
AGAAATGAAGAAAACTCAGA+TGG - chr1_2:51663990-51664009 Msa0075960:intron 30.0%
AGATGGTAAATAAAGGGTTT+CGG - chr1_2:51664007-51664026 Msa0075960:intron 30.0%
! AGATTTTACCACTATCTGAT+GGG + chr1_2:51664049-51664068 None:intergenic 30.0%
! AAGATTTTACCACTATCTGA+TGG + chr1_2:51664050-51664069 None:intergenic 30.0%
! TCAGATAGTGGTAAAATCTT+TGG - chr1_2:51664050-51664069 Msa0075960:intron 30.0%
AGTGGTAAAATCTTTGGATA+TGG - chr1_2:51664056-51664075 Msa0075960:intron 30.0%
GTGGTAAAATCTTTGGATAT+GGG - chr1_2:51664057-51664076 Msa0075960:intron 30.0%
AAAAGTAGAGAGAAGTAAGA+AGG - chr1_2:51664086-51664105 Msa0075960:intron 30.0%
AAAGTAGAGAGAAGTAAGAA+GGG - chr1_2:51664087-51664106 Msa0075960:intron 30.0%
ATCTGACAAAGTTTGAAGAT+AGG - chr1_2:51664405-51664424 Msa0075960:intron 30.0%
TTAGACACAATGGTATACTA+TGG - chr1_2:51664428-51664447 Msa0075960:intron 30.0%
TCCCAAAACAATTACACAAA+TGG + chr1_2:51664883-51664902 None:intergenic 30.0%
!!! ATTTGTGTAATTGTTTTGGG+AGG - chr1_2:51664882-51664901 Msa0075960:intron 30.0%
AACACAATATACAGATCATG+TGG + chr1_2:51664938-51664957 None:intergenic 30.0%
TATTGTGTTTACTGCATTTG+TGG - chr1_2:51664949-51664968 Msa0075960:intron 30.0%
TTGTATTCCAAGTGTTAGTT+GGG - chr1_2:51664974-51664993 Msa0075960:intron 30.0%
AACAGAAATTAACCAATTGG+TGG - chr1_2:51665153-51665172 Msa0075960:intron 30.0%
!! TGATAGAAGTTTTATCCACT+GGG + chr1_2:51665234-51665253 None:intergenic 30.0%
!! TTGATAGAAGTTTTATCCAC+TGG + chr1_2:51665235-51665254 None:intergenic 30.0%
GTGGATAAAACTTCTATCAA+AGG - chr1_2:51665235-51665254 Msa0075960:intron 30.0%
!!! AATTTTGGTTTGCTTAAAGC+TGG - chr1_2:51665397-51665416 Msa0075960:intron 30.0%
!!! CAGAAAAGGTCATTTTTCTT+AGG + chr1_2:51665514-51665533 None:intergenic 30.0%
AATCTCATTGTTATCATCAC+AGG + chr1_2:51665539-51665558 None:intergenic 30.0%
!! TTCTTGTACTCGTGTTTTTA+AGG - chr1_2:51665582-51665601 Msa0075960:intron 30.0%
! TTTTGCTCTCATAAATGTGA+TGG - chr1_2:51665626-51665645 Msa0075960:intron 30.0%
CCTGCTTGATAAATTTAATG+AGG + chr1_2:51665670-51665689 None:intergenic 30.0%
CCTCATTAAATTTATCAAGC+AGG - chr1_2:51665667-51665686 Msa0075960:intron 30.0%
ATTAAATTTATCAAGCAGGG+AGG - chr1_2:51665671-51665690 Msa0075960:intron 30.0%
GGATACAAATGGAGATTATT+TGG - chr1_2:51665952-51665971 Msa0075960:intron 30.0%
ATTCATGAACTTAATTCCAG+TGG - chr1_2:51666028-51666047 Msa0075960:CDS 30.0%
ATTATAACAGAGACACTAAC+TGG + chr1_2:51666244-51666263 None:intergenic 30.0%
GATGATAAATAAGCAGTCAT+TGG + chr1_2:51666368-51666387 None:intergenic 30.0%
CAAATAAAGTAAAGCCGTAA+AGG - chr1_2:51666396-51666415 Msa0075960:intron 30.0%
AACCAGTCTATATTCCTTTA+CGG + chr1_2:51666413-51666432 None:intergenic 30.0%
!! TTCACATATTAGCTTGCATT+TGG - chr1_2:51666443-51666462 Msa0075960:intron 30.0%
ATGATAAGTCGGTAAAGATA+TGG - chr1_2:51666704-51666723 Msa0075960:intron 30.0%
AGTAATCTACATCAACAACT+TGG + chr1_2:51666856-51666875 None:intergenic 30.0%
ATTTCCTGTACCAGTACTAT+TGG + chr1_2:51658299-51658318 None:intergenic 35.0%
TTGACGGTTGAGAATTAGAA+GGG + chr1_2:51658330-51658349 None:intergenic 35.0%
GTATGAATAGATGGAGTTGA+CGG + chr1_2:51658346-51658365 None:intergenic 35.0%
! TCCAAGGGTTTGATGATTTA+TGG - chr1_2:51658418-51658437 Msa0075960:three_prime_UTR 35.0%
ACCATAAATCATCAAACCCT+TGG + chr1_2:51658422-51658441 None:intergenic 35.0%
!! ATACAAGTTGATTTACCAGC+TGG + chr1_2:51658480-51658499 None:intergenic 35.0%
!! TTTTGTAACTTGCATTACCC+GGG - chr1_2:51658501-51658520 Msa0075960:CDS 35.0%
ACCACCCTGTATATTAAAGT+AGG - chr1_2:51658654-51658673 Msa0075960:intron 35.0%
TCCTACTTTAATATACAGGG+TGG + chr1_2:51658658-51658677 None:intergenic 35.0%
! TACCCAATGCCTTTCATTTT+TGG - chr1_2:51658687-51658706 Msa0075960:intron 35.0%
!! TGCCAAAAATGAAAGGCATT+GGG + chr1_2:51658692-51658711 None:intergenic 35.0%
! TTGCCAAAAATGAAAGGCAT+TGG + chr1_2:51658693-51658712 None:intergenic 35.0%
CTAACATTATAGATACGAGC+AGG + chr1_2:51658738-51658757 None:intergenic 35.0%
CTGCTCGTATCTATAATGTT+AGG - chr1_2:51658736-51658755 Msa0075960:intron 35.0%
!! TTGGAACATTTTGGAGATGT+TGG - chr1_2:51659052-51659071 Msa0075960:intron 35.0%
TCATTTCTCTCACAAGATGA+TGG - chr1_2:51659097-51659116 Msa0075960:CDS 35.0%
! GTGATGGAAAGGACTTATTT+GGG - chr1_2:51659119-51659138 Msa0075960:CDS 35.0%
! ACTTATTTGGGACGTTGAAA+CGG - chr1_2:51659131-51659150 Msa0075960:CDS 35.0%
CATGCTACAGATTCTTCAAA+AGG - chr1_2:51659166-51659185 Msa0075960:CDS 35.0%
AGTTCTATACGCAAAAGCAA+TGG - chr1_2:51659275-51659294 Msa0075960:intron 35.0%
ATCATTGTCTGCTCCTATTA+CGG - chr1_2:51659852-51659871 Msa0075960:intron 35.0%
CAGATTGAATAAGGATAGGA+TGG + chr1_2:51659919-51659938 None:intergenic 35.0%
CATCCTATCCTTATTCAATC+TGG - chr1_2:51659917-51659936 Msa0075960:intron 35.0%
ACACCAGATTGAATAAGGAT+AGG + chr1_2:51659923-51659942 None:intergenic 35.0%
TCCTTATTCAATCTGGTGTT+TGG - chr1_2:51659924-51659943 Msa0075960:intron 35.0%
ACCAAACACCAGATTGAATA+AGG + chr1_2:51659928-51659947 None:intergenic 35.0%
TGCTAAACCACCAAAAACTA+AGG + chr1_2:51660019-51660038 None:intergenic 35.0%
! TATGATTAGGTTGTACTGCT+TGG - chr1_2:51660511-51660530 Msa0075960:intron 35.0%
TTAGTTAAGACGGTAGAACA+CGG - chr1_2:51660609-51660628 Msa0075960:intron 35.0%
ACAGTATATGGTACCAAAGA+AGG + chr1_2:51660686-51660705 None:intergenic 35.0%
GTTCAGAAAAACACTTGACT+TGG + chr1_2:51660905-51660924 None:intergenic 35.0%
!! GTTGATTCTTTTGTTCTCCT+AGG - chr1_2:51661037-51661056 Msa0075960:intron 35.0%
CATCATTATGGATTTAGCCT+AGG + chr1_2:51661057-51661076 None:intergenic 35.0%
TACATGAAGTTATCGTACTG+TGG - chr1_2:51661119-51661138 Msa0075960:intron 35.0%
ACATGAAGTTATCGTACTGT+GGG - chr1_2:51661120-51661139 Msa0075960:intron 35.0%
GAGTGACTTTAGTTGAAGAA+AGG + chr1_2:51661240-51661259 None:intergenic 35.0%
CTTTACCAACTTCGATTACT+TGG - chr1_2:51661289-51661308 Msa0075960:intron 35.0%
TCAATCCAAGTAATCGAAGT+TGG + chr1_2:51661297-51661316 None:intergenic 35.0%
TACAAGTAAAAACCGGTATC+CGG - chr1_2:51661361-51661380 Msa0075960:intron 35.0%
ATAGACAATATACCGGATAC+CGG + chr1_2:51661376-51661395 None:intergenic 35.0%
CGGTATATTGTCTATATGAG+AGG - chr1_2:51661381-51661400 Msa0075960:intron 35.0%
! ATATGAGAGGGATGTTTTCT+AGG - chr1_2:51661394-51661413 Msa0075960:intron 35.0%
TATGAGGATTGTGCAGAAAT+AGG - chr1_2:51661430-51661449 Msa0075960:intron 35.0%
!!! ACATGACCATTTTTGAAGCA+TGG - chr1_2:51661464-51661483 Msa0075960:intron 35.0%
CTGTATCCATGCTTCAAAAA+TGG + chr1_2:51661473-51661492 None:intergenic 35.0%
!! TAAGGGTTTCGTTTTTACCT+TGG + chr1_2:51661890-51661909 None:intergenic 35.0%
CCTTTGAATCTACTTTGGTA+AGG + chr1_2:51661908-51661927 None:intergenic 35.0%
CCTTACCAAAGTAGATTCAA+AGG - chr1_2:51661905-51661924 Msa0075960:intron 35.0%
ACCAAAGTAGATTCAAAGGA+AGG - chr1_2:51661909-51661928 Msa0075960:intron 35.0%
CCAAAGTAGATTCAAAGGAA+GGG - chr1_2:51661910-51661929 Msa0075960:intron 35.0%
! TTTGGTGACAGCAGAATATA+AGG + chr1_2:51661951-51661970 None:intergenic 35.0%
GTGAGGCCAATATTATTTGA+TGG + chr1_2:51662002-51662021 None:intergenic 35.0%
ATTCTGTATTCATCGGATGT+TGG - chr1_2:51662196-51662215 Msa0075960:intron 35.0%
GGATACTAGAAGTAAACTTC+TGG + chr1_2:51662258-51662277 None:intergenic 35.0%
GTTTACTTCTAGTATCCGTA+TGG - chr1_2:51662261-51662280 Msa0075960:intron 35.0%
TTCTAGTATCCGTATGGTAT+GGG - chr1_2:51662267-51662286 Msa0075960:intron 35.0%
AAACTGGAGTGAATGATTCA+TGG - chr1_2:51662295-51662314 Msa0075960:intron 35.0%
AACTGGAGTGAATGATTCAT+GGG - chr1_2:51662296-51662315 Msa0075960:intron 35.0%
TTATCCTATCCCTTGTCATT+AGG - chr1_2:51662426-51662445 Msa0075960:intron 35.0%
CAAAGAACAACCTAATGACA+AGG + chr1_2:51662439-51662458 None:intergenic 35.0%
! CTTGTCATTAGGTTGTTCTT+TGG - chr1_2:51662437-51662456 Msa0075960:intron 35.0%
!! TTAGGTTGTTCTTTGGAACA+TGG - chr1_2:51662444-51662463 Msa0075960:intron 35.0%
ATAATAACAGTGTGTTCCTC+TGG + chr1_2:51662493-51662512 None:intergenic 35.0%
TGTTATAATCCCGTATACAC+AGG + chr1_2:51662657-51662676 None:intergenic 35.0%
! ATTCAATTTTCTCTTCCCCA+TGG - chr1_2:51662695-51662714 Msa0075960:CDS 35.0%
! TTCAATTTTCTCTTCCCCAT+GGG - chr1_2:51662696-51662715 Msa0075960:CDS 35.0%
GTAAACTTATAATCCCCATG+GGG + chr1_2:51662713-51662732 None:intergenic 35.0%
AGTATACCTGTCTTATGTTG+TGG - chr1_2:51662769-51662788 Msa0075960:intron 35.0%
GTATACCTGTCTTATGTTGT+GGG - chr1_2:51662770-51662789 Msa0075960:intron 35.0%
AATGAATGCCAGTATTGTCT+AGG - chr1_2:51662888-51662907 Msa0075960:intron 35.0%
TCATGCAATTCACCCTTATT+TGG - chr1_2:51663219-51663238 Msa0075960:intron 35.0%
CAACTCAAACTAGCCAAATA+AGG + chr1_2:51663235-51663254 None:intergenic 35.0%
!! CTTATTTGGCTAGTTTGAGT+TGG - chr1_2:51663233-51663252 Msa0075960:intron 35.0%
TAAAGGTTTCTGAATCAGGT+AGG - chr1_2:51663265-51663284 Msa0075960:intron 35.0%
TTTGGGCATAATCCCAATAA+AGG - chr1_2:51663296-51663315 Msa0075960:intron 35.0%
TTGGGCATAATCCCAATAAA+GGG - chr1_2:51663297-51663316 Msa0075960:intron 35.0%
!! TTCAGTTGAACCTTTTAGGT+TGG - chr1_2:51663423-51663442 Msa0075960:intron 35.0%
!!! TCAGTTGAACCTTTTAGGTT+GGG - chr1_2:51663424-51663443 Msa0075960:intron 35.0%
AATAGTTGTAGGTTTACCGA+GGG - chr1_2:51663478-51663497 Msa0075960:intron 35.0%
TATTACAGAAGGAAATCCCT+CGG + chr1_2:51663497-51663516 None:intergenic 35.0%
TATCAATTGTTCCAACATGC+CGG - chr1_2:51663568-51663587 Msa0075960:intron 35.0%
! TCCTCAATCTTTGATAACAC+TGG + chr1_2:51663607-51663626 None:intergenic 35.0%
TATCAAAGATTGAGGACATG+TGG - chr1_2:51663611-51663630 Msa0075960:intron 35.0%
ATCAAAGATTGAGGACATGT+GGG - chr1_2:51663612-51663631 Msa0075960:intron 35.0%
GTGCATCAACAGGATATTAT+GGG - chr1_2:51663643-51663662 Msa0075960:intron 35.0%
CAAAAAACCTTTCAGCTCTA+GGG + chr1_2:51663690-51663709 None:intergenic 35.0%
TCAAAAAACCTTTCAGCTCT+AGG + chr1_2:51663691-51663710 None:intergenic 35.0%
AAAACTAATGCATAAGGTCC+AGG - chr1_2:51663909-51663928 Msa0075960:intron 35.0%
TTGGCAAACATCTGATGTTT+CGG - chr1_2:51664110-51664129 Msa0075960:intron 35.0%
ACCATATGCACTAGAATTGT+CGG - chr1_2:51664190-51664209 Msa0075960:intron 35.0%
TGAAGATAGGTTAGACACAA+TGG - chr1_2:51664418-51664437 Msa0075960:intron 35.0%
ACAATGGTATACTATGGTGT+AGG - chr1_2:51664434-51664453 Msa0075960:intron 35.0%
TTACTCTATAACTCTCACCT+GGG + chr1_2:51664553-51664572 None:intergenic 35.0%
TTTACTCTATAACTCTCACC+TGG + chr1_2:51664554-51664573 None:intergenic 35.0%
ATTGGAGACAGAATCAACAT+GGG + chr1_2:51664604-51664623 None:intergenic 35.0%
TATTGGAGACAGAATCAACA+TGG + chr1_2:51664605-51664624 None:intergenic 35.0%
TTTGTGAATGGCATTGTTGA+GGG - chr1_2:51664793-51664812 Msa0075960:intron 35.0%
ACAAGTGAATAACCAGAAAG+AGG - chr1_2:51664835-51664854 Msa0075960:intron 35.0%
!! TCATGGGTTTGGTGTTAAAA+TGG - chr1_2:51664910-51664929 Msa0075960:intron 35.0%
CTTGTATTCCAAGTGTTAGT+TGG - chr1_2:51664973-51664992 Msa0075960:intron 35.0%
AGGAAGAACTCAATAATTGC+AGG - chr1_2:51665028-51665047 Msa0075960:intron 35.0%
TGCAGGTTTGAAAGTTATGA+TGG - chr1_2:51665045-51665064 Msa0075960:intron 35.0%
AAAGTTATGATGGCACAGAT+TGG - chr1_2:51665055-51665074 Msa0075960:intron 35.0%
AAGTTATGATGGCACAGATT+GGG - chr1_2:51665056-51665075 Msa0075960:intron 35.0%
!! ATTAACCAATTGGTGGTGTA+AGG - chr1_2:51665160-51665179 Msa0075960:intron 35.0%
ATTACAACTTCATATCCCAG+TGG - chr1_2:51665216-51665235 Msa0075960:intron 35.0%
AAACGTCATACTATTGTCCA+AGG + chr1_2:51665369-51665388 None:intergenic 35.0%
TTTCTTAGGGTGGAAATCAA+GGG + chr1_2:51665500-51665519 None:intergenic 35.0%
! TTTTCTTAGGGTGGAAATCA+AGG + chr1_2:51665501-51665520 None:intergenic 35.0%
!!! AAAGGTCATTTTTCTTAGGG+TGG + chr1_2:51665510-51665529 None:intergenic 35.0%
TATCATCACAGGAACAGAAA+AGG + chr1_2:51665528-51665547 None:intergenic 35.0%
ATAACAATGAGATTCGCTTC+TGG - chr1_2:51665545-51665564 Msa0075960:intron 35.0%
ACTCATTACAGGTGTAAACA+AGG - chr1_2:51665795-51665814 Msa0075960:intron 35.0%
GTCAAGAATCTGTCAAAGTT+TGG - chr1_2:51665984-51666003 Msa0075960:intron 35.0%
AGAATGAAACATGTTTCCAC+TGG + chr1_2:51666047-51666066 None:intergenic 35.0%
GGGTTAAGCAATGTAATCAT+TGG + chr1_2:51666316-51666335 None:intergenic 35.0%
TAAATAAGCAGTCATTGGCA+GGG + chr1_2:51666363-51666382 None:intergenic 35.0%
ATAAATAAGCAGTCATTGGC+AGG + chr1_2:51666364-51666383 None:intergenic 35.0%
! CATTGATGACTTACAGTCAT+TGG - chr1_2:51666573-51666592 Msa0075960:intron 35.0%
! AAATAAAAAGTGCGACGCTT+GGG - chr1_2:51666727-51666746 Msa0075960:CDS 35.0%
! ATGTAGGCCCTTTCCTTTTT+CGG + chr1_2:51658264-51658283 None:intergenic 40.0%
ACTGGTACAGGAAATACACT+TGG - chr1_2:51658304-51658323 Msa0075960:three_prime_UTR 40.0%
GTTGACGGTTGAGAATTAGA+AGG + chr1_2:51658331-51658350 None:intergenic 40.0%
ACTCCATCTATTCATACTCC+TGG - chr1_2:51658349-51658368 Msa0075960:three_prime_UTR 40.0%
! TCACCAGGAGTATGAATAGA+TGG + chr1_2:51658355-51658374 None:intergenic 40.0%
TCTATTCATACTCCTGGTGA+TGG - chr1_2:51658355-51658374 Msa0075960:three_prime_UTR 40.0%
AATGTTGCTGGTGTATCCAA+GGG - chr1_2:51658403-51658422 Msa0075960:three_prime_UTR 40.0%
! ATTTATGGTACTGAAGGAGC+AGG - chr1_2:51658433-51658452 Msa0075960:three_prime_UTR 40.0%
!! TTGATTTACCAGCTGGTTTG+TGG + chr1_2:51658473-51658492 None:intergenic 40.0%
! TTTGTAACTTGCATTACCCG+GGG - chr1_2:51658502-51658521 Msa0075960:CDS 40.0%
! GATACGAGCAGGAATCTTTT+CGG + chr1_2:51658727-51658746 None:intergenic 40.0%
! TGGCTCCTTAGATGATAATG+TGG - chr1_2:51659072-51659091 Msa0075960:intron 40.0%
!! ACAAGATGATGGTGATGGAA+AGG - chr1_2:51659108-51659127 Msa0075960:CDS 40.0%
!! GGTGATGGAAAGGACTTATT+TGG - chr1_2:51659118-51659137 Msa0075960:CDS 40.0%
TGAAGAATCTGTAGCATGCT+CGG + chr1_2:51659164-51659183 None:intergenic 40.0%
TGACTGTATAGGTCCATTTC+AGG - chr1_2:51659233-51659252 Msa0075960:CDS 40.0%
ACTGAAGGAAAAGCCTGAAA+TGG + chr1_2:51659249-51659268 None:intergenic 40.0%
! TGCTGTCATTTCTCTTCAGA+TGG - chr1_2:51659308-51659327 Msa0075960:intron 40.0%
! GCTGTCATTTCTCTTCAGAT+GGG - chr1_2:51659309-51659328 Msa0075960:intron 40.0%
TCCTTATCATGTGCACCAAT+CGG + chr1_2:51659879-51659898 None:intergenic 40.0%
CAGGTTCTGCTATCATCATT+TGG - chr1_2:51660263-51660282 Msa0075960:intron 40.0%
CACTTATTCTGTCATGCGTT+TGG + chr1_2:51660456-51660475 None:intergenic 40.0%
GTCTATCCTGTCACTATAGA+AGG - chr1_2:51660475-51660494 Msa0075960:intron 40.0%
CAAATGCCTTCTATAGTGAC+AGG + chr1_2:51660484-51660503 None:intergenic 40.0%
TGATTCCATCTTAACAGGCA+TGG - chr1_2:51660538-51660557 Msa0075960:intron 40.0%
GATTCCATCTTAACAGGCAT+GGG - chr1_2:51660539-51660558 Msa0075960:intron 40.0%
TTTACCCATGCCTGTTAAGA+TGG + chr1_2:51660546-51660565 None:intergenic 40.0%
ATCTCGTGTCTATCCTTCTT+TGG - chr1_2:51660670-51660689 Msa0075960:intron 40.0%
! GTTGGTAAAGCCCATTTACA+TGG + chr1_2:51661279-51661298 None:intergenic 40.0%
TGAGCAGAAAACCAAATCCA+AGG - chr1_2:51661870-51661889 Msa0075960:intron 40.0%
CCCTTCCTTTGAATCTACTT+TGG + chr1_2:51661913-51661932 None:intergenic 40.0%
AACAAAACTAGGGAGTAGTG+AGG + chr1_2:51662019-51662038 None:intergenic 40.0%
GAATATATTCCACAGGTAGC+TGG - chr1_2:51662111-51662130 Msa0075960:intron 40.0%
CTTCTAGTATCCGTATGGTA+TGG - chr1_2:51662266-51662285 Msa0075960:intron 40.0%
TCTAGTATCCGTATGGTATG+GGG - chr1_2:51662268-51662287 Msa0075960:intron 40.0%
! GTTTTTCTCCCCATACCATA+CGG + chr1_2:51662279-51662298 None:intergenic 40.0%
TATGGTATGGGGAGAAAAAC+TGG - chr1_2:51662279-51662298 Msa0075960:intron 40.0%
ACAACCTAATGACAAGGGAT+AGG + chr1_2:51662433-51662452 None:intergenic 40.0%
CTTCGTTTGATACAACTGTG+CGG - chr1_2:51662557-51662576 Msa0075960:intron 40.0%
TACACAGGAAAGACAAGGAA+AGG + chr1_2:51662642-51662661 None:intergenic 40.0%
CCTTGTCTTTCCTGTGTATA+CGG - chr1_2:51662644-51662663 Msa0075960:CDS 40.0%
CTTGTCTTTCCTGTGTATAC+GGG - chr1_2:51662645-51662664 Msa0075960:CDS 40.0%
! TCAATTTTCTCTTCCCCATG+GGG - chr1_2:51662697-51662716 Msa0075960:CDS 40.0%
AGTTAAGGAGTGGAGTGATA+AGG + chr1_2:51662816-51662835 None:intergenic 40.0%
AGGATATAAGGTTCGTTTGG+TGG + chr1_2:51662851-51662870 None:intergenic 40.0%
ATTTCTTACAGTGAGTAGGG+AGG + chr1_2:51662871-51662890 None:intergenic 40.0%
TGGGCATAATCCCAATAAAG+GGG - chr1_2:51663298-51663317 Msa0075960:intron 40.0%
AGAATTGCTTATGTGGCAGT+TGG - chr1_2:51663341-51663360 Msa0075960:intron 40.0%
! ATGAGTGTAGTGGAGGAAAA+TGG - chr1_2:51663377-51663396 Msa0075960:intron 40.0%
! TGTAGTGGAGGAAAATGGTA+AGG - chr1_2:51663382-51663401 Msa0075960:intron 40.0%
! GTAGTGGAGGAAAATGGTAA+GGG - chr1_2:51663383-51663402 Msa0075960:intron 40.0%
CAATAGTTGTAGGTTTACCG+AGG - chr1_2:51663477-51663496 Msa0075960:intron 40.0%
GGCATGTTGGAACAATTGAT+AGG + chr1_2:51663569-51663588 None:intergenic 40.0%
GCCAGTGTTATCAAAGATTG+AGG - chr1_2:51663603-51663622 Msa0075960:intron 40.0%
GGTGCATCAACAGGATATTA+TGG - chr1_2:51663642-51663661 Msa0075960:intron 40.0%
ATTATGGGAATGCATCCCTT+TGG - chr1_2:51663658-51663677 Msa0075960:intron 40.0%
TTATGGGAATGCATCCCTTT+GGG - chr1_2:51663659-51663678 Msa0075960:intron 40.0%
!! AAATAAAGGGTTTCGGTGTC+TGG - chr1_2:51664014-51664033 Msa0075960:intron 40.0%
GATACATTCCCATCAGATAG+TGG - chr1_2:51664038-51664057 Msa0075960:intron 40.0%
TAGAGAGAAGTAAGAAGGGT+TGG - chr1_2:51664091-51664110 Msa0075960:intron 40.0%
TCCGACAATTCTAGTGCATA+TGG + chr1_2:51664194-51664213 None:intergenic 40.0%
!! TAGGGTTCTGATTTGGGTAT+GGG + chr1_2:51664271-51664290 None:intergenic 40.0%
! AGTGTCTAGGGTTCTGATTT+GGG + chr1_2:51664277-51664296 None:intergenic 40.0%
! TAGTGTCTAGGGTTCTGATT+TGG + chr1_2:51664278-51664297 None:intergenic 40.0%
TGAGGTTGAACAGTTCATCA+TGG - chr1_2:51664367-51664386 Msa0075960:intron 40.0%
GAGGTTGAACAGTTCATCAT+GGG - chr1_2:51664368-51664387 Msa0075960:intron 40.0%
CCTTTACTTTCTGAGCACAT+GGG + chr1_2:51664500-51664519 None:intergenic 40.0%
ACCTTTACTTTCTGAGCACA+TGG + chr1_2:51664501-51664520 None:intergenic 40.0%
TATAACTCTCACCTGGGTTT+GGG + chr1_2:51664547-51664566 None:intergenic 40.0%
TTGGAGACAGAATCAACATG+GGG + chr1_2:51664603-51664622 None:intergenic 40.0%
ATTCCCACTACAATTCTGAC+CGG - chr1_2:51664638-51664657 Msa0075960:intron 40.0%
GTCTTTGTTGCTGCAATCTA+TGG - chr1_2:51664671-51664690 Msa0075960:intron 40.0%
CATAGGATGTACACACCAAA+GGG + chr1_2:51664753-51664772 None:intergenic 40.0%
TCATAGGATGTACACACCAA+AGG + chr1_2:51664754-51664773 None:intergenic 40.0%
!! CACAAACTGTGCTGCTTAAA+GGG + chr1_2:51664779-51664798 None:intergenic 40.0%
!! TCACAAACTGTGCTGCTTAA+AGG + chr1_2:51664780-51664799 None:intergenic 40.0%
TAAGCAGCACAGTTTGTGAA+TGG - chr1_2:51664781-51664800 Msa0075960:intron 40.0%
GTTTGTGAATGGCATTGTTG+AGG - chr1_2:51664792-51664811 Msa0075960:intron 40.0%
CAAAACGTACAACCTCTTTC+TGG + chr1_2:51664850-51664869 None:intergenic 40.0%
!!! TGTTTTGGGAGGAAAGTTCA+TGG - chr1_2:51664893-51664912 Msa0075960:intron 40.0%
!!! GTTTTGGGAGGAAAGTTCAT+GGG - chr1_2:51664894-51664913 Msa0075960:intron 40.0%
AGCAAAACCCAACTAACACT+TGG + chr1_2:51664984-51665003 None:intergenic 40.0%
! TTAGTTGGGTTTTGCTTCAG+TGG - chr1_2:51664988-51665007 Msa0075960:intron 40.0%
! TAGTTGGGTTTTGCTTCAGT+GGG - chr1_2:51664989-51665008 Msa0075960:intron 40.0%
!! AGGTATAAGCATTGAACACC+TGG + chr1_2:51665340-51665359 None:intergenic 40.0%
TGCTTATACCTCTTATGCCT+TGG - chr1_2:51665349-51665368 Msa0075960:intron 40.0%
ACTATTGTCCAAGGCATAAG+AGG + chr1_2:51665360-51665379 None:intergenic 40.0%
GCTGCAAAAGTAATAGCCAA+AGG + chr1_2:51665429-51665448 None:intergenic 40.0%
CTTTCTTTGCAGGCATATAG+CGG - chr1_2:51665454-51665473 Msa0075960:intron 40.0%
TCTTTGATGTTGAGACTGAC+AGG - chr1_2:51665765-51665784 Msa0075960:intron 40.0%
!! ATGTATTTCTAGGGACACTC+TGG - chr1_2:51665908-51665927 Msa0075960:CDS 40.0%
!! TGTATTTCTAGGGACACTCT+GGG - chr1_2:51665909-51665928 Msa0075960:CDS 40.0%
TGTGTATGCTGGGATACAAA+TGG - chr1_2:51665941-51665960 Msa0075960:intron 40.0%
TTCATGAATGCAATCACCAG+AGG + chr1_2:51666017-51666036 None:intergenic 40.0%
TACTCCAACCTCTTGGTTAT+CGG - chr1_2:51666085-51666104 Msa0075960:CDS 40.0%
TTGATATGTGCAGACATACC+TGG + chr1_2:51666117-51666136 None:intergenic 40.0%
TGATTACATTGCTTAACCCC+TGG - chr1_2:51666317-51666336 Msa0075960:intron 40.0%
AAATAAGCAGTCATTGGCAG+GGG + chr1_2:51666362-51666381 None:intergenic 40.0%
AGCCGTAAAGGAATATAGAC+TGG - chr1_2:51666408-51666427 Msa0075960:intron 40.0%
ACTTACAGTCATTGGAGCTA+TGG - chr1_2:51666581-51666600 Msa0075960:intron 40.0%
TTCTGCCAGTCATGATAAGT+CGG - chr1_2:51666693-51666712 Msa0075960:intron 40.0%
!! CTTTACCGACTTATCATGAC+TGG + chr1_2:51666701-51666720 None:intergenic 40.0%
! GAAATAAAAAGTGCGACGCT+TGG - chr1_2:51666726-51666745 Msa0075960:CDS 40.0%
GAATGTTGCTGGTGTATCCA+AGG - chr1_2:51658402-51658421 Msa0075960:three_prime_UTR 45.0%
AAATAGCCGACCTCACTTAG+TGG - chr1_2:51658563-51658582 Msa0075960:CDS 45.0%
AATAGCCGACCTCACTTAGT+GGG - chr1_2:51658564-51658583 Msa0075960:CDS 45.0%
CTTATCCCACTAAGTGAGGT+CGG + chr1_2:51658572-51658591 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+AGG + chr1_2:51658576-51658595 None:intergenic 45.0%
TCACTTAGTGGGATAAGGCT+TGG - chr1_2:51658575-51658594 Msa0075960:CDS 45.0%
!!! GTTTTAGTTGCAGGATGGCT+TGG - chr1_2:51659033-51659052 Msa0075960:intron 45.0%
!! CAGGATGGCTTGGAACATTT+TGG - chr1_2:51659043-51659062 Msa0075960:intron 45.0%
! CTCTCACAAGATGATGGTGA+TGG - chr1_2:51659103-51659122 Msa0075960:CDS 45.0%
GGGAAATTATTAGCCAGTGC+TGG - chr1_2:51659329-51659348 Msa0075960:intron 45.0%
CCTTATCATGTGCACCAATC+GGG + chr1_2:51659878-51659897 None:intergenic 45.0%
GGTGCACATGATAAGGAGAT+AGG - chr1_2:51659882-51659901 Msa0075960:intron 45.0%
!! CTGGTGTTTGGTGCATCAAT+AGG - chr1_2:51659936-51659955 Msa0075960:intron 45.0%
! ACACGAGATACTCAGGGTTT+TGG + chr1_2:51660659-51660678 None:intergenic 45.0%
GGATAGACACGAGATACTCA+GGG + chr1_2:51660665-51660684 None:intergenic 45.0%
AGGATAGACACGAGATACTC+AGG + chr1_2:51660666-51660685 None:intergenic 45.0%
ACAGAGGCTATATGACTACG+TGG + chr1_2:51660743-51660762 None:intergenic 45.0%
CACTCGAAAGATGAAGTTGC+CGG - chr1_2:51660781-51660800 Msa0075960:intron 45.0%
ACTCGAAAGATGAAGTTGCC+GGG - chr1_2:51660782-51660801 Msa0075960:intron 45.0%
GGTAAAGAAGGACAGCCATT+TGG - chr1_2:51661601-51661620 Msa0075960:intron 45.0%
CAAGAAGACAGCAGACCAAA+TGG + chr1_2:51661619-51661638 None:intergenic 45.0%
! CGGATGTTGGCATGTTTTTC+TGG - chr1_2:51662209-51662228 Msa0075960:intron 45.0%
CAGACCAAATTCAACTCAGC+TGG - chr1_2:51662528-51662547 Msa0075960:intron 45.0%
! GTTGCCAGCTGAGTTGAATT+TGG + chr1_2:51662535-51662554 None:intergenic 45.0%
TTGATACAACTGTGCGGCTT+TGG - chr1_2:51662563-51662582 Msa0075960:intron 45.0%
TGATACAACTGTGCGGCTTT+GGG - chr1_2:51662564-51662583 Msa0075960:intron 45.0%
CCGTATACACAGGAAAGACA+AGG + chr1_2:51662647-51662666 None:intergenic 45.0%
TACCTGTCTTATGTTGTGGG+TGG - chr1_2:51662773-51662792 Msa0075960:intron 45.0%
ACCTGTCTTATGTTGTGGGT+GGG - chr1_2:51662774-51662793 Msa0075960:intron 45.0%
TGGAGTGATAAGGAGGTTGA+GGG + chr1_2:51662806-51662825 None:intergenic 45.0%
TAAGGAGTGGAGTGATAAGG+AGG + chr1_2:51662813-51662832 None:intergenic 45.0%
! ATAAGGTTCGTTTGGTGGCT+GGG + chr1_2:51662846-51662865 None:intergenic 45.0%
! TATAAGGTTCGTTTGGTGGC+TGG + chr1_2:51662847-51662866 None:intergenic 45.0%
GGGAGGATATAAGGTTCGTT+TGG + chr1_2:51662854-51662873 None:intergenic 45.0%
CAGTGAGTAGGGAGGATATA+AGG + chr1_2:51662863-51662882 None:intergenic 45.0%
ACACAGCACCTAGACAATAC+TGG + chr1_2:51662899-51662918 None:intergenic 45.0%
! ATTGTCTAGGTGCTGTGTCT+AGG - chr1_2:51662901-51662920 Msa0075960:intron 45.0%
GATGATTAACCAATGCCCCT+GGG - chr1_2:51663127-51663146 Msa0075960:intron 45.0%
ATGATTAACCAATGCCCCTG+GGG - chr1_2:51663128-51663147 Msa0075960:intron 45.0%
!! AATGTTAAAGAGTGCCCCAG+GGG + chr1_2:51663145-51663164 None:intergenic 45.0%
!! GAATGTTAAAGAGTGCCCCA+GGG + chr1_2:51663146-51663165 None:intergenic 45.0%
!! AGAATGTTAAAGAGTGCCCC+AGG + chr1_2:51663147-51663166 None:intergenic 45.0%
TCTGAATCAGGTAGGATACC+TGG - chr1_2:51663273-51663292 Msa0075960:intron 45.0%
ATCAGGTAGGATACCTGGTT+TGG - chr1_2:51663278-51663297 Msa0075960:intron 45.0%
TCAGGTAGGATACCTGGTTT+GGG - chr1_2:51663279-51663298 Msa0075960:intron 45.0%
ATTGGGATTATGCCCAAACC+AGG + chr1_2:51663294-51663313 None:intergenic 45.0%
TCCCAATAAAGGGGTTGAGT+AGG - chr1_2:51663307-51663326 Msa0075960:intron 45.0%
CCCTACTCAACCCCTTTATT+GGG + chr1_2:51663311-51663330 None:intergenic 45.0%
CCCAATAAAGGGGTTGAGTA+GGG - chr1_2:51663308-51663327 Msa0075960:intron 45.0%
TCCCTACTCAACCCCTTTAT+TGG + chr1_2:51663312-51663331 None:intergenic 45.0%
ATTGCTTATGTGGCAGTTGG+TGG - chr1_2:51663344-51663363 Msa0075960:intron 45.0%
TTGCTTATGTGGCAGTTGGT+GGG - chr1_2:51663345-51663364 Msa0075960:intron 45.0%
TAGGCAAATGAGTGTAGTGG+AGG - chr1_2:51663370-51663389 Msa0075960:intron 45.0%
! TGAGGACATGTGGGCTAATA+AGG - chr1_2:51663621-51663640 Msa0075960:intron 45.0%
GGCTAATAAGGTGCATCAAC+AGG - chr1_2:51663633-51663652 Msa0075960:intron 45.0%
CCAAGACTGAAACCAAAGCA+TGG + chr1_2:51663773-51663792 None:intergenic 45.0%
! CCATGCTTTGGTTTCAGTCT+TGG - chr1_2:51663770-51663789 Msa0075960:intron 45.0%
! TTTATCGTGATGCACTGACG+CGG + chr1_2:51663871-51663890 None:intergenic 45.0%
AAGGTCCAGGTGAGATGAAT+AGG - chr1_2:51663922-51663941 Msa0075960:intron 45.0%
AGGTCCAGGTGAGATGAATA+GGG - chr1_2:51663923-51663942 Msa0075960:intron 45.0%
TCTTCCCTATTCATCTCACC+TGG + chr1_2:51663930-51663949 None:intergenic 45.0%
GGACGCTAAATCACATGTAG+CGG - chr1_2:51664211-51664230 Msa0075960:intron 45.0%
!! AGGGTTCTGATTTGGGTATG+GGG + chr1_2:51664270-51664289 None:intergenic 45.0%
!! CTAGGGTTCTGATTTGGGTA+TGG + chr1_2:51664272-51664291 None:intergenic 45.0%
CTCAAGTGGTCTAGTGTCTA+GGG + chr1_2:51664289-51664308 None:intergenic 45.0%
GAAACAAGTGAACCAATGGC+TGG + chr1_2:51664336-51664355 None:intergenic 45.0%
GGTGGAAACAAGTGAACCAA+TGG + chr1_2:51664340-51664359 None:intergenic 45.0%
TTGTTTCCACCTGTGTGTTG+AGG - chr1_2:51664349-51664368 Msa0075960:intron 45.0%
ACTGTTCAACCTCAACACAC+AGG + chr1_2:51664361-51664380 None:intergenic 45.0%
! AGGTTTCGCTCTAGACCTTA+CGG - chr1_2:51664454-51664473 Msa0075960:intron 45.0%
! CACATGGGCTATCTCAATGT+GGG + chr1_2:51664485-51664504 None:intergenic 45.0%
CCCATGTGCTCAGAAAGTAA+AGG - chr1_2:51664497-51664516 Msa0075960:intron 45.0%
ACTATCTTTGACCCAAACCC+AGG - chr1_2:51664533-51664552 Msa0075960:intron 45.0%
CTATAACTCTCACCTGGGTT+TGG + chr1_2:51664548-51664567 None:intergenic 45.0%
GAATGACACGCGTCTAGTAT+TGG + chr1_2:51664622-51664641 None:intergenic 45.0%
TTCCCACTACAATTCTGACC+GGG - chr1_2:51664639-51664658 Msa0075960:intron 45.0%
CAACGATACACACACCACAT+GGG + chr1_2:51664721-51664740 None:intergenic 45.0%
ACAACGATACACACACCACA+TGG + chr1_2:51664722-51664741 None:intergenic 45.0%
!! TGCTGCTTAAAGGGCATCAT+AGG + chr1_2:51664770-51664789 None:intergenic 45.0%
TTATGATGGCACAGATTGGG+AGG - chr1_2:51665059-51665078 Msa0075960:intron 45.0%
TATGATGGCACAGATTGGGA+GGG - chr1_2:51665060-51665079 Msa0075960:intron 45.0%
CCAAACCTTACACCACCAAT+TGG + chr1_2:51665168-51665187 None:intergenic 45.0%
!! CCAATTGGTGGTGTAAGGTT+TGG - chr1_2:51665165-51665184 Msa0075960:intron 45.0%
TTAAAGCTGGCACTCACCTT+TGG - chr1_2:51665410-51665429 Msa0075960:intron 45.0%
TATGCCTGCAAAGAAAGGCT+TGG + chr1_2:51665451-51665470 None:intergenic 45.0%
CGCTATATGCCTGCAAAGAA+AGG + chr1_2:51665456-51665475 None:intergenic 45.0%
CAGGCAAATGCACTCATTAC+AGG - chr1_2:51665784-51665803 Msa0075960:intron 45.0%
!! GTATTTCTAGGGACACTCTG+GGG - chr1_2:51665910-51665929 Msa0075960:CDS 45.0%
! GGAGGTACATTGTGTATGCT+GGG - chr1_2:51665931-51665950 Msa0075960:intron 45.0%
AAAGTTTGGTCACTTGCCTC+TGG - chr1_2:51665998-51666017 Msa0075960:intron 45.0%
CCAAGAGGTTGGAGTAACTT+GGG + chr1_2:51666081-51666100 None:intergenic 45.0%
ACCAAGAGGTTGGAGTAACT+TGG + chr1_2:51666082-51666101 None:intergenic 45.0%
TATGACCATACCAGCTCATG+AGG - chr1_2:51666624-51666643 Msa0075960:intron 45.0%
ATGACCATACCAGCTCATGA+GGG - chr1_2:51666625-51666644 Msa0075960:intron 45.0%
GATATTACACCCTCATGAGC+TGG + chr1_2:51666637-51666656 None:intergenic 45.0%
TGTCACTGGTGATTGTGCTA+GGG + chr1_2:51666662-51666681 None:intergenic 45.0%
TAGCACAATCACCAGTGACA+GGG - chr1_2:51666662-51666681 Msa0075960:intron 45.0%
!! TTTATTATATTATATTATGT+GGG - chr1_2:51659448-51659467 Msa0075960:CDS 5.0%
AGGAAAGGGCCTACATCTTC+AGG - chr1_2:51658268-51658287 Msa0075960:three_prime_UTR 50.0%
TTGGCAGCTCCTGAAGATGT+AGG + chr1_2:51658280-51658299 None:intergenic 50.0%
TCAGGAGCTGCCAATAGTAC+TGG - chr1_2:51658286-51658305 Msa0075960:three_prime_UTR 50.0%
!! GCTGCCAATAGTACTGGTAC+AGG - chr1_2:51658292-51658311 Msa0075960:three_prime_UTR 50.0%
!! TCCTGGTGATGGAGTTGCTA+TGG - chr1_2:51658366-51658385 Msa0075960:three_prime_UTR 50.0%
!! TGGTGATGGAGTTGCTATGG+CGG - chr1_2:51658369-51658388 Msa0075960:three_prime_UTR 50.0%
GGCAACTTGCAGAATGTTGC+TGG - chr1_2:51658391-51658410 Msa0075960:three_prime_UTR 50.0%
! TATGGTACTGAAGGAGCAGG+CGG - chr1_2:51658436-51658455 Msa0075960:three_prime_UTR 50.0%
TGCATCTTCCACAAACCAGC+TGG - chr1_2:51658462-51658481 Msa0075960:CDS 50.0%
CGACCTCACTTAGTGGGATA+AGG - chr1_2:51658570-51658589 Msa0075960:CDS 50.0%
AATCTGTAGCATGCTCGGCA+GGG + chr1_2:51659159-51659178 None:intergenic 50.0%
CTTCTTGTCATGTCCAGCAC+TGG + chr1_2:51659345-51659364 None:intergenic 50.0%
! CAGTGCTGGACATGACAAGA+AGG - chr1_2:51659343-51659362 Msa0075960:intron 50.0%
CCCGATTGGTGCACATGATA+AGG - chr1_2:51659875-51659894 Msa0075960:intron 50.0%
GTTCTGCTATGTAGCAGCAG+AGG - chr1_2:51660192-51660211 Msa0075960:intron 50.0%
AAGATGAAGTTGCCGGGTCA+AGG - chr1_2:51660788-51660807 Msa0075960:intron 50.0%
AAGAACTAGCCAGCTACCTG+TGG + chr1_2:51662123-51662142 None:intergenic 50.0%
CCTGTCTTATGTTGTGGGTG+GGG - chr1_2:51662775-51662794 Msa0075960:intron 50.0%
GTGGAGTGATAAGGAGGTTG+AGG + chr1_2:51662807-51662826 None:intergenic 50.0%
! TAAGGTTCGTTTGGTGGCTG+GGG + chr1_2:51662845-51662864 None:intergenic 50.0%
GGATGATTAACCAATGCCCC+TGG - chr1_2:51663126-51663145 Msa0075960:intron 50.0%
GGGGTTGAGTAGGGAACTTA+AGG - chr1_2:51663317-51663336 Msa0075960:intron 50.0%
! TGCTTATGTGGCAGTTGGTG+GGG - chr1_2:51663346-51663365 Msa0075960:intron 50.0%
GGGTAGGCAAATGAGTGTAG+TGG - chr1_2:51663367-51663386 Msa0075960:intron 50.0%
CTCTCTCTGCCCAACCTAAA+AGG + chr1_2:51663436-51663455 None:intergenic 50.0%
!! CTCTCTAAGATCCGGCATGT+TGG + chr1_2:51663582-51663601 None:intergenic 50.0%
!! CACTGGCTCTCTCTAAGATC+CGG + chr1_2:51663590-51663609 None:intergenic 50.0%
TGGAGGGTCATACCATGCTT+TGG - chr1_2:51663758-51663777 Msa0075960:intron 50.0%
!! GTTTCAGTCTTGGTGCCAAG+AGG - chr1_2:51663780-51663799 Msa0075960:intron 50.0%
ATGATACCCAGTCTGCATCG+AGG + chr1_2:51663807-51663826 None:intergenic 50.0%
CCTCAAGTGGTCTAGTGTCT+AGG + chr1_2:51664290-51664309 None:intergenic 50.0%
CCTAGACACTAGACCACTTG+AGG - chr1_2:51664287-51664306 Msa0075960:intron 50.0%
GTTCAACCTCAACACACAGG+TGG + chr1_2:51664358-51664377 None:intergenic 50.0%
! GGTTTCGCTCTAGACCTTAC+GGG - chr1_2:51664455-51664474 Msa0075960:intron 50.0%
! GCACATGGGCTATCTCAATG+TGG + chr1_2:51664486-51664505 None:intergenic 50.0%
TCCCACTACAATTCTGACCG+GGG - chr1_2:51664640-51664659 Msa0075960:intron 50.0%
AACAAAGACGATGTGTGCCC+CGG + chr1_2:51664660-51664679 None:intergenic 50.0%
TCGTTGTTCTGCGAACCCTT+TGG - chr1_2:51664735-51664754 Msa0075960:intron 50.0%
GGGAGGAAAGTTCATGGGTT+TGG - chr1_2:51664899-51664918 Msa0075960:intron 50.0%
!! GGTTTTGCTTCAGTGGGCTT+CGG - chr1_2:51664995-51665014 Msa0075960:intron 50.0%
! TTCAGTGGGCTTCGGAGAAA+TGG - chr1_2:51665003-51665022 Msa0075960:intron 50.0%
TGGGCTTCGGAGAAATGGAA+AGG - chr1_2:51665008-51665027 Msa0075960:intron 50.0%
CACAACATTGCCAGATGCTG+CGG + chr1_2:51665741-51665760 None:intergenic 50.0%
! GGGAGGTACATTGTGTATGC+TGG - chr1_2:51665930-51665949 Msa0075960:intron 50.0%
CCCAAGTTACTCCAACCTCT+TGG - chr1_2:51666078-51666097 Msa0075960:CDS 50.0%
TCCAACCTCTTGGTTATCGG+AGG - chr1_2:51666088-51666107 Msa0075960:CDS 50.0%
TCCTCCGATAACCAAGAGGT+TGG + chr1_2:51666092-51666111 None:intergenic 50.0%
GGTATCCTCCGATAACCAAG+AGG + chr1_2:51666096-51666115 None:intergenic 50.0%
CTTGGTTATCGGAGGATACC+AGG - chr1_2:51666096-51666115 Msa0075960:CDS 50.0%
!! TGGTGTTGATCGGACTACCA+GGG + chr1_2:51666337-51666356 None:intergenic 50.0%
GTCATTGGAGCTATGGCACA+TGG - chr1_2:51666588-51666607 Msa0075960:intron 50.0%
TACACCCTCATGAGCTGGTA+TGG + chr1_2:51666632-51666651 None:intergenic 50.0%
CTGTCACTGGTGATTGTGCT+AGG + chr1_2:51666663-51666682 None:intergenic 50.0%
CTAGCACAATCACCAGTGAC+AGG - chr1_2:51666661-51666680 Msa0075960:intron 50.0%
ACAATCACCAGTGACAGGGA+TGG - chr1_2:51666666-51666685 Msa0075960:intron 50.0%
GCCATAGCAACTCCATCACC+AGG + chr1_2:51658370-51658389 None:intergenic 55.0%
!! GGTGATGGAGTTGCTATGGC+GGG - chr1_2:51658370-51658389 Msa0075960:three_prime_UTR 55.0%
GAATCTGTAGCATGCTCGGC+AGG + chr1_2:51659160-51659179 None:intergenic 55.0%
TGCTCCTATTACGGCCCGAT+TGG - chr1_2:51659861-51659880 Msa0075960:intron 55.0%
TGCACCAATCGGGCCGTAAT+AGG + chr1_2:51659868-51659887 None:intergenic 55.0%
AGTTGCCGGGTCAAGGTTGA+CGG - chr1_2:51660795-51660814 Msa0075960:intron 55.0%
ACCATCCGTCAACCTTGACC+CGG + chr1_2:51660803-51660822 None:intergenic 55.0%
CCCCACCCACAACATAAGAC+AGG + chr1_2:51662778-51662797 None:intergenic 55.0%
!! GCTTATGTGGCAGTTGGTGG+GGG - chr1_2:51663347-51663366 Msa0075960:intron 55.0%
TGGGAATGCATCCCTTTGGG+TGG - chr1_2:51663662-51663681 Msa0075960:intron 55.0%
!! GCTCTAGGGATCCACCCAAA+GGG + chr1_2:51663676-51663695 None:intergenic 55.0%
!! AGCTCTAGGGATCCACCCAA+AGG + chr1_2:51663677-51663696 None:intergenic 55.0%
GGTGGATCCCTAGAGCTGAA+AGG - chr1_2:51663680-51663699 Msa0075960:intron 55.0%
AGTCTGCATCGAGGTCCTCT+TGG + chr1_2:51663798-51663817 None:intergenic 55.0%
AAGAGGACCTCGATGCAGAC+TGG - chr1_2:51663797-51663816 Msa0075960:intron 55.0%
AGAGGACCTCGATGCAGACT+GGG - chr1_2:51663798-51663817 Msa0075960:intron 55.0%
TGAGGCAAGGTTGCCTCAAG+TGG + chr1_2:51664303-51664322 None:intergenic 55.0%
TGGTGCAGGTAGTTGAGGCA+AGG + chr1_2:51664316-51664335 None:intergenic 55.0%
ATGGCTGGTGCAGGTAGTTG+AGG + chr1_2:51664321-51664340 None:intergenic 55.0%
CAACTACCTGCACCAGCCAT+TGG - chr1_2:51664321-51664340 Msa0075960:intron 55.0%
AGTGAACCAATGGCTGGTGC+AGG + chr1_2:51664330-51664349 None:intergenic 55.0%
!! TCAATGTGGGCTAGCCCGTA+AGG + chr1_2:51664472-51664491 None:intergenic 55.0%
GCCCCGGTCAGAATTGTAGT+GGG + chr1_2:51664644-51664663 None:intergenic 55.0%
TGCCCCGGTCAGAATTGTAG+TGG + chr1_2:51664645-51664664 None:intergenic 55.0%
ATGGCACAGATTGGGAGGGT+TGG - chr1_2:51665064-51665083 Msa0075960:intron 55.0%
TGGCACAGATTGGGAGGGTT+GGG - chr1_2:51665065-51665084 Msa0075960:intron 55.0%
ACAGATTGGGAGGGTTGGGT+GGG - chr1_2:51665069-51665088 Msa0075960:intron 55.0%
GCAGCCAAGCCTTTCTTTGC+AGG - chr1_2:51665444-51665463 Msa0075960:intron 55.0%
CAAGCAGGGAGGATCTACAC+AGG - chr1_2:51665682-51665701 Msa0075960:intron 55.0%
AGGGAGGATCTACACAGGTG+AGG - chr1_2:51665687-51665706 Msa0075960:intron 55.0%
CACAGGTGAGGTTTCAGCCA+AGG - chr1_2:51665699-51665718 Msa0075960:intron 55.0%
GTGAGGTTTCAGCCAAGGAG+TGG - chr1_2:51665704-51665723 Msa0075960:intron 55.0%
! TTTCTAGGGACACTCTGGGG+AGG - chr1_2:51665913-51665932 Msa0075960:CDS 55.0%
!! GGTGTTGATCGGACTACCAG+GGG + chr1_2:51666336-51666355 None:intergenic 55.0%
!! CTGGTGTTGATCGGACTACC+AGG + chr1_2:51666338-51666357 None:intergenic 55.0%
GAAGCAACCATCCCTGTCAC+TGG + chr1_2:51666676-51666695 None:intergenic 55.0%
GAAAACGCAGAGCACGCCAG+AGG - chr1_2:51662474-51662493 Msa0075960:intron 60.0%
GGGGTGGGAGAGTTAAGGAG+TGG + chr1_2:51662826-51662845 None:intergenic 60.0%
TGGCTGGGGTGGGAGAGTTA+AGG + chr1_2:51662831-51662850 None:intergenic 60.0%
! GTTCGTTTGGTGGCTGGGGT+GGG + chr1_2:51662841-51662860 None:intergenic 60.0%
!! AAAGAGTGCCCCAGGGGCAT+TGG + chr1_2:51663139-51663158 None:intergenic 60.0%
!! ATGTGGCAGTTGGTGGGGGT+AGG - chr1_2:51663351-51663370 Msa0075960:intron 60.0%
CACCACATGGGCTTGCAGCA+GGG + chr1_2:51664709-51664728 None:intergenic 60.0%
ACACCACATGGGCTTGCAGC+AGG + chr1_2:51664710-51664729 None:intergenic 60.0%
CACAGATTGGGAGGGTTGGG+TGG - chr1_2:51665068-51665087 Msa0075960:intron 60.0%
CAGATTGGGAGGGTTGGGTG+GGG - chr1_2:51665070-51665089 Msa0075960:intron 60.0%
GGGTTGGGTGGGGTTACATG+TGG - chr1_2:51665080-51665099 Msa0075960:intron 60.0%
GCCAAGGAGTGGACACCTTC+TGG - chr1_2:51665715-51665734 Msa0075960:intron 60.0%
!! GCCAGAAGGTGTCCACTCCT+TGG + chr1_2:51665719-51665738 None:intergenic 60.0%
!! GGCAGGGGACTGGTGTTGAT+CGG + chr1_2:51666347-51666366 None:intergenic 60.0%
AGCAGTCATTGGCAGGGGAC+TGG + chr1_2:51666357-51666376 None:intergenic 60.0%
GCCGGGTCAAGGTTGACGGA+TGG - chr1_2:51660799-51660818 Msa0075960:intron 65.0%
! GGTTCGTTTGGTGGCTGGGG+TGG + chr1_2:51662842-51662861 None:intergenic 65.0%
GTCCCTGCTGCAAGCCCATG+TGG - chr1_2:51664704-51664723 Msa0075960:intron 65.0%
CACCTTCTGGCCGCAGCATC+TGG - chr1_2:51665728-51665747 Msa0075960:intron 65.0%
TGCCAGATGCTGCGGCCAGA+AGG + chr1_2:51665733-51665752 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 51658256 51666934 51658256 ID=Msa0075960;Name=Msa0075960
chr1_2 mRNA 51658256 51666934 51658256 ID=Msa0075960-mRNA-1;Parent=Msa0075960;Name=Msa0075960-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|1|0.87|1|0.85|0.87|8|202|416
chr1_2 exon 51658256 51658601 51658256 ID=Msa0075960-mRNA-1:exon:15924;Parent=Msa0075960-mRNA-1
chr1_2 exon 51659073 51659270 51659073 ID=Msa0075960-mRNA-1:exon:15923;Parent=Msa0075960-mRNA-1
chr1_2 exon 51659385 51659501 51659385 ID=Msa0075960-mRNA-1:exon:15922;Parent=Msa0075960-mRNA-1
chr1_2 exon 51659587 51659742 51659587 ID=Msa0075960-mRNA-1:exon:15921;Parent=Msa0075960-mRNA-1
chr1_2 exon 51662593 51662742 51662593 ID=Msa0075960-mRNA-1:exon:15920;Parent=Msa0075960-mRNA-1
chr1_2 exon 51665826 51665935 51665826 ID=Msa0075960-mRNA-1:exon:15919;Parent=Msa0075960-mRNA-1
chr1_2 exon 51666003 51666150 51666003 ID=Msa0075960-mRNA-1:exon:15918;Parent=Msa0075960-mRNA-1
chr1_2 exon 51666707 51666934 51666707 ID=Msa0075960-mRNA-1:exon:15917;Parent=Msa0075960-mRNA-1
chr1_2 CDS 51666707 51666934 51666707 ID=Msa0075960-mRNA-1:cds;Parent=Msa0075960-mRNA-1
chr1_2 CDS 51666003 51666150 51666003 ID=Msa0075960-mRNA-1:cds;Parent=Msa0075960-mRNA-1
chr1_2 CDS 51665826 51665935 51665826 ID=Msa0075960-mRNA-1:cds;Parent=Msa0075960-mRNA-1
chr1_2 CDS 51662593 51662742 51662593 ID=Msa0075960-mRNA-1:cds;Parent=Msa0075960-mRNA-1
chr1_2 CDS 51659587 51659742 51659587 ID=Msa0075960-mRNA-1:cds;Parent=Msa0075960-mRNA-1
chr1_2 CDS 51659385 51659501 51659385 ID=Msa0075960-mRNA-1:cds;Parent=Msa0075960-mRNA-1
chr1_2 CDS 51659073 51659270 51659073 ID=Msa0075960-mRNA-1:cds;Parent=Msa0075960-mRNA-1
chr1_2 CDS 51658458 51658601 51658458 ID=Msa0075960-mRNA-1:cds;Parent=Msa0075960-mRNA-1
chr1_2 three_prime_UTR 51658256 51658457 51658256 ID=Msa0075960-mRNA-1:three_prime_utr;Parent=Msa0075960-mRNA-1
Gene Sequence

>Msa0075960

AATAACCGAAAAAGGAAAGGGCCTACATCTTCAGGAGCTGCCAATAGTACTGGTACAGGAAATACACTTGGCCCTTCTAATTCTCAACCGTCAACTCCATCTATTCATACTCCTGGTGATGGAGTTGCTATGGCGGGCAACTTGCAGAATGTTGCTGGTGTATCCAAGGGTTTGATGATTTATGGTACTGAAGGAGCAGGCGGTCTTGCATCTTCCACAAACCAGCTGTTGCAGGATGGCTTGGAACATTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAATCATTTCTCTCACAAGATGATGGTGATGGAAAGGACTTATTTGGGACGTTGAAACGGAACCCTGCCGAGCATGCTACAGATTCTTCAAAAGGCTTTTCCTTCAGTGAAGTTAGTTCTATACGCAAAAGCAATGGAAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCCAGTGCTGGACATGACAAGAAGGTTGTTCTTTGGAACATGGAGACACTGAAAACGCAGAGCACGCCAGAGGAACACACTGTTATTATTACTGACGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACATCTTCGTTTGATACAACTGTGCGGCTTTGGGATGCTGCTGATCCAAGCCTTTCTTTGCAGGCATATAGCGGTCATACTTCACATGTTGCATCCCTTGATTTCCACCCTAAGAAAAATGACCTTTTCTGTTCCTGTGATGATAACAATGAGATTCGCTTCTGGAATATTAGTCAATATTCTTGTACTCGTGTTTTTAAGGGAGGATCTACACAGGTGAGGTTTCAGCCAAGGAGTGGACACCTTCTGGCCGCAGCATCTGGCAATGTTGTGTCTCTCTTTGATGTTGAGACTGACAGGCAAATGCACTCATTACAGGGACACTCTGGGGAGGTACATTGTGTATGCTGGGATACAAATGGAGATTATTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTTTGGTCACTTGCCTCTGGTGATTGCATTCATGAACTTAATTCCAGTGGAAACATGTTTCATTCTTGTGTTTTTCACCCAAGTTACTCCAACCTCTTGGTTATCGGAGGATACCAGTCATTGGAGCTATGGCACATGGCCGAAAACAAATGTATGACCATACCAGCTCATGAGGGTGTAATATCAGCCCTAGCACAATCACCAGTGACAGGGATGGTTGCTTCTGCCAGTCATGATAAGTCGGTAAAGATATGGAAATAA
Protein sequence

>Msa0075960

NNRKRKGPTSSGAANSTGTGNTLGPSNSQPSTPSIHTPGDGVAMAGNLQNVAGVSKGLMIYGTEGAGGLASSTNQLLQDGLEHFGDVGSLDDNVESFLSQDDGDGKDLFGTLKRNPAEHATDSSKGFSFSEVSSIRKSNGKVVCCHFSSDGKLLASAGHDKKVVLWNMETLKTQSTPEEHTVIITDVRFRPNSTQLATSSFDTTVRLWDAADPSLSLQAYSGHTSHVASLDFHPKKNDLFCSCDDNNEIRFWNISQYSCTRVFKGGSTQVRFQPRSGHLLAAASGNVVSLFDVETDRQMHSLQGHSGEVHCVCWDTNGDYLASVSQESVKVWSLASGDCIHELNSSGNMFHSCVFHPSYSNLLVIGGYQSLELWHMAENKCMTIPAHEGVISALAQSPVTGMVASASHDKSVKIWK*