AlfalfaGEDB | Msa0052790

M. sativa cultivar zhongmu-4 / Msa0052790

KEGG: K02949
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
PFAM: PF16205.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0052790	sp\|P17093\|RS11_SOYBN	90.062	161	14	1	1	161	1	159	3.84e-94	272

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0052790	G7IBA9	97.516	161	4	0	1	161	1	161	2.20e-111	322

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002750	Msa0052790	0.802551	5.316750e-49	-8.615850e-47
Msa0052790	Msa0097580	0.902597	8.235622e-79	-8.615850e-47
Msa0052790	Msa0146340	0.818747	1.668435e-52	-8.615850e-47
Msa0052790	Msa0298140	0.822490	2.304277e-53	-8.615850e-47
Msa0052790	Msa0337670	0.814587	1.428353e-51	-8.615850e-47
Msa0052790	Msa0348830	0.821744	3.430840e-53	-8.615850e-47
Msa0052790	Msa0483110	0.816939	4.269374e-52	-8.615850e-47
Msa0052790	Msa0623200	0.818252	2.160298e-52	-8.615850e-47
Msa0052790	Msa0706500	0.815884	7.354878e-52	-8.615850e-47
Msa0052790	Msa1043690	0.816755	4.694913e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0052790	MtrunA17_Chr1g0152301	97.516	161	4	0	1	161	1	161	4.23e-115	322
Msa0052790	MtrunA17_Chr8g0372611	93.789	161	9	1	1	161	1	160	1.49e-98	280
Msa0052790	MtrunA17_Chr4g0065131	93.168	161	10	1	1	161	1	160	2.92e-98	280

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0052790	AT5G23740.1	87.578	161	18	1	1	161	1	159	9.39e-93	266
Msa0052790	AT3G48930.1	86.335	161	21	1	1	161	1	160	3.66e-91	262
Msa0052790	AT4G30800.1	86.335	161	20	1	1	161	1	159	8.33e-89	256

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Find 58 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGGTGATACGTGTGC+AGG	0.596227	1_2:+7106901	None:intergenic
AAACCTTCAATGGCTTCCCT+AGG	0.582868	1_2:+7107624	None:intergenic
AACCTCACTGTCTTAGAAAG+TGG	0.510906	1_2:+7106713	None:intergenic
AAGCGATTGCCACCCTTTCC+AGG	0.318925	1_2:+7107678	None:intergenic
AAGGGGAAGAGACCTGGAAA+GGG	0.530695	1_2:-7107690	Msa0052790:CDS
ACTCCTAGGGAAGCCATTGA+AGG	0.484194	1_2:-7107627	Msa0052790:intron
ACTGGTAATGTCTCAATCCG+AGG	0.640857	1_2:-7107137	Msa0052790:CDS
ATAAAACCATTATTGTTAGG+AGG	0.551945	1_2:-7107076	Msa0052790:CDS
ATAATTCCTCCTAACAATAA+TGG	0.308146	1_2:+7107070	None:intergenic
ATCACCTTGTTTCCGAGTGA+AGG	0.529932	1_2:-7106890	Msa0052790:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGAGAAAGAAACCTTCAA+TGG	+	chr1_2:7106607-7106626	None:intergenic	30.0%
CTCTGTTTGGTAAAAAATAG+TGG	+	chr1_2:7106804-7106823	None:intergenic	30.0%
TGTGTATGCTTGTTCTTATT+AGG	-	chr1_2:7107270-7107289	Msa0052790:intron	30.0%
TTTGAGAAAGAAACCTTCAA+TGG	+	chr1_2:7106607-7106626	None:intergenic	30.0%
CTCTGTTTGGTAAAAAATAG+TGG	+	chr1_2:7106804-7106823	None:intergenic	30.0%
TGTGTATGCTTGTTCTTATT+AGG	-	chr1_2:7107270-7107289	Msa0052790:intron	30.0%
TTTGAATTTGTAGACCGAGA+AGG	-	chr1_2:7106458-7106477	Msa0052790:three_prime_UTR	35.0%
AAGCTTTCATGAAGAGCTTA+TGG	-	chr1_2:7106841-7106860	Msa0052790:intron	35.0%
AGATAAGCTCAAATAAGCCA+TGG	-	chr1_2:7106954-7106973	Msa0052790:intron	35.0%
ATTGAGACATTACCAGTGAA+GGG	+	chr1_2:7107078-7107097	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	7106302	7107938	7106302	ID=Msa0052790;Name=Msa0052790
chr1_2	mRNA	7106302	7107938	7106302	ID=Msa0052790-mRNA-1;Parent=Msa0052790;Name=Msa0052790-mRNA-1;_AED=0.03;_eAED=0.03;_QI=59\|1\|1\|1\|1\|1\|5\|338\|161
chr1_2	exon	7106302	7106736	7106302	ID=Msa0052790-mRNA-1:exon:2424;Parent=Msa0052790-mRNA-1
chr1_2	exon	7106859	7106948	7106859	ID=Msa0052790-mRNA-1:exon:2423;Parent=Msa0052790-mRNA-1
chr1_2	exon	7107044	7107188	7107044	ID=Msa0052790-mRNA-1:exon:2422;Parent=Msa0052790-mRNA-1
chr1_2	exon	7107628	7107769	7107628	ID=Msa0052790-mRNA-1:exon:2421;Parent=Msa0052790-mRNA-1
chr1_2	exon	7107868	7107938	7107868	ID=Msa0052790-mRNA-1:exon:2420;Parent=Msa0052790-mRNA-1
chr1_2	five_prime_UTR	7107880	7107938	7107880	ID=Msa0052790-mRNA-1:five_prime_utr;Parent=Msa0052790-mRNA-1
chr1_2	CDS	7107868	7107879	7107868	ID=Msa0052790-mRNA-1:cds;Parent=Msa0052790-mRNA-1
chr1_2	CDS	7107628	7107769	7107628	ID=Msa0052790-mRNA-1:cds;Parent=Msa0052790-mRNA-1
chr1_2	CDS	7107044	7107188	7107044	ID=Msa0052790-mRNA-1:cds;Parent=Msa0052790-mRNA-1
chr1_2	CDS	7106859	7106948	7106859	ID=Msa0052790-mRNA-1:cds;Parent=Msa0052790-mRNA-1
chr1_2	CDS	7106640	7106736	7106640	ID=Msa0052790-mRNA-1:cds;Parent=Msa0052790-mRNA-1
chr1_2	three_prime_UTR	7106302	7106639	7106302	ID=Msa0052790-mRNA-1:three_prime_utr;Parent=Msa0052790-mRNA-1

Gene Sequence

>Msa0052790

ATGGCTGAACAAACCGAGAAGGCTTTTCTGAAGCAAAATAAAGTGTTTTTGTGCTCGAAGATATCTGGGAAGGGGAAGAGACCTGGAAAGGGTGGCAATCGCTTTTATAAATCTGTTGGCCTTAGTTTTAAGACTCCTAGGGAAGCCATTGAAGGAACCTATATTGACAAGAAGTGTCCCTTCACTGGTAATGTCTCAATCCGAGGTCGTATCATATCCGGTACTTGCCATAGTGCTAAGATGAATAAAACCATTATTGTTAGGAGGAATTATCTTCATTTCATTAAGAAATATCAGAGGTATGAGAAGCGCCATTCTAATATTCCTGCACACGTATCACCTTGTTTCCGAGTGAAGGAAGGGGATCATGTTATTATTGGCCAATGCAGGCCACTTTCTAAGACAGTGAGGTTCAATGTATTGAAAGTCATCCCAGCTGGATCTTCTAGTGGTGCCGGTGCCAAGAAGGCGTTTACAGGAGTCTGA

Protein sequence

>Msa0052790

MAEQTEKAFLKQNKVFLCSKISGKGKRPGKGGNRFYKSVGLSFKTPREAIEGTYIDKKCPFTGNVSIRGRIISGTCHSAKMNKTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAGAKKAFTGV*