Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143510 | XP_013444087.1 | 100.000 | 215 | 0 | 0 | 1 | 215 | 1 | 215 | 4.79e-155 | 438 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143510 | sp|Q08069|RS8_MAIZE | 85.845 | 219 | 26 | 1 | 1 | 214 | 1 | 219 | 2.01e-136 | 384 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143510 | I3T3T7 | 100.000 | 215 | 0 | 0 | 1 | 215 | 1 | 215 | 2.29e-155 | 438 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0048180 | Msa1143510 | 0.808152 | 3.563843e-50 | -8.615850e-47 |
| Msa0052790 | Msa1143510 | 0.847606 | 1.039745e-59 | -8.615850e-47 |
| Msa0097580 | Msa1143510 | 0.800367 | 1.489820e-48 | -8.615850e-47 |
| Msa0623200 | Msa1143510 | 0.805753 | 1.146563e-49 | -8.615850e-47 |
| Msa0666230 | Msa1143510 | 0.813109 | 3.022415e-51 | -8.615850e-47 |
| Msa0706500 | Msa1143510 | 0.810512 | 1.110872e-50 | -8.615850e-47 |
| Msa0785130 | Msa1143510 | 0.807691 | 4.466553e-50 | -8.615850e-47 |
| Msa0218830 | Msa1143510 | 0.825297 | 5.061550e-54 | -8.615850e-47 |
| Msa0219120 | Msa1143510 | 0.804909 | 1.722663e-49 | -8.615850e-47 |
| Msa0443390 | Msa1143510 | 0.800031 | 1.743993e-48 | -8.615850e-47 |
| Msa1019240 | Msa1143510 | 0.811935 | 5.457011e-51 | -8.615850e-47 |
| Msa1019260 | Msa1143510 | 0.807395 | 5.161679e-50 | -8.615850e-47 |
| Msa1039520 | Msa1143510 | 0.803715 | 3.054153e-49 | -8.615850e-47 |
| Msa1072710 | Msa1143510 | 0.810453 | 1.144057e-50 | -8.615850e-47 |
| Msa0258850 | Msa1143510 | 0.808650 | 2.791237e-50 | -8.615850e-47 |
| Msa0298200 | Msa1143510 | 0.806958 | 6.387773e-50 | -8.615850e-47 |
| Msa0336010 | Msa1143510 | 0.828321 | 9.593407e-55 | -8.615850e-47 |
| Msa0337670 | Msa1143510 | 0.808519 | 2.976925e-50 | -8.615850e-47 |
| Msa0348830 | Msa1143510 | 0.858575 | 7.499975e-63 | -8.615850e-47 |
| Msa1143510 | Msa1173160 | 0.844909 | 5.643064e-59 | -8.615850e-47 |
| Msa1143510 | Msa1230580 | 0.878965 | 1.832255e-69 | -8.615850e-47 |
| Msa1143510 | Msa1273340 | 0.938662 | 4.647162e-99 | -8.615850e-47 |
| Msa1143510 | Msa1299590 | 0.831615 | 1.510192e-55 | -8.615850e-47 |
| Msa1143510 | Msa1340980 | 0.821325 | 4.287974e-53 | -8.615850e-47 |
| Msa1143510 | Msa1349570 | 0.804654 | 1.946863e-49 | -8.615850e-47 |
| Msa1143510 | Msa1362790 | 0.819114 | 1.376232e-52 | -8.615850e-47 |
| Msa1143510 | Msa1369190 | 0.818219 | 2.197348e-52 | -8.615850e-47 |
| Msa1143510 | Msa1427560 | 0.804035 | 2.620757e-49 | -8.615850e-47 |
| Msa1143510 | Msa1455950 | 0.800688 | 1.281600e-48 | -8.615850e-47 |
| Msa0483110 | Msa1143510 | 0.810360 | 1.198301e-50 | -8.615850e-47 |
| Msa0527150 | Msa1143510 | 0.892528 | 1.460531e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143510 | MtrunA17_Chr8g0339111 | 100.000 | 215 | 0 | 0 | 1 | 215 | 1 | 215 | 4.40e-159 | 438 |
| Msa1143510 | MtrunA17_Chr7g0234781 | 91.705 | 217 | 16 | 1 | 1 | 215 | 1 | 217 | 9.26e-127 | 356 |
| Msa1143510 | MtrunA17_Chr4g0006811 | 86.528 | 193 | 23 | 2 | 26 | 215 | 5 | 197 | 6.47e-117 | 331 |
| Msa1143510 | MtrunA17_Chr8g0339121 | 86.387 | 191 | 24 | 1 | 26 | 214 | 5 | 195 | 1.23e-110 | 316 |
| Msa1143510 | MtrunA17_Chr4g0006791 | 73.494 | 83 | 21 | 1 | 134 | 215 | 12 | 94 | 4.64e-36 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143510 | AT5G59240.1 | 85.714 | 203 | 22 | 1 | 1 | 203 | 1 | 196 | 1.69e-126 | 356 |
| Msa1143510 | AT5G20290.1 | 80.476 | 210 | 34 | 1 | 1 | 203 | 1 | 210 | 1.04e-108 | 311 |
Find 59 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAAGCTGGCGTTCTTTC+TGG | 0.095224 | 7_4:+19137522 | None:intergenic |
| CACCCTTGCCCTTCTTCTTC+TGG | 0.129125 | 7_4:+19137278 | None:intergenic |
| AATAACCAAGAACAGTTTAA+AGG | 0.276098 | 7_4:+19137104 | None:intergenic |
| CAACACTATGGTGTTGATAT+TGG | 0.287835 | 7_4:-19138111 | Msa1143510:CDS |
| TGCAGTATTCAGAAATTAAT+CGG | 0.325013 | 7_4:+19137038 | None:intergenic |
| TGTGAAGAGTGCTATTGTTC+AGG | 0.325462 | 7_4:-19138166 | Msa1143510:CDS |
| TTCATCCAGTTTCTTCAAGA+TGG | 0.386922 | 7_4:-19139464 | Msa1143510:exon |
| AGTTCGCACCAACTCATTGT+TGG | 0.421739 | 7_4:+19138197 | None:intergenic |
| ACTTCCCCATGAGAAGTTAC+CGG | 0.438688 | 7_4:+19138269 | None:intergenic |
| GCACAAAACATCTCTTTGTT+CGG | 0.438936 | 7_4:+19137193 | None:intergenic |
| TGTACCCATCTTGAAGAAAC+TGG | 0.443233 | 7_4:+19139459 | None:intergenic |
| GTGAGGAGGATTCGTGTTAG+AGG | 0.449573 | 7_4:-19138327 | Msa1143510:CDS |
| CAATGGTACCTTCAACACTA+TGG | 0.459815 | 7_4:-19138123 | Msa1143510:CDS |
| GGTCAATGCGGCAGAGCTGA+TGG | 0.461383 | 7_4:-19137440 | Msa1143510:CDS |
| ATATGCAGCTACATTCTTGA+AGG | 0.462284 | 7_4:-19137331 | Msa1143510:intron |
| ATGCACAAGAGACGTGAAAC+TGG | 0.464049 | 7_4:-19139310 | Msa1143510:CDS |
| TCATCCAGTTTCTTCAAGAT+GGG | 0.486532 | 7_4:-19139463 | Msa1143510:intron |
| TTGAAGGTACCATTGCTTGA+AGG | 0.488302 | 7_4:+19138131 | None:intergenic |
| CAGCTACATTCTTGAAGGTA+AGG | 0.488998 | 7_4:-19137326 | Msa1143510:CDS |
| TATCAACACCATAGTGTTGA+AGG | 0.489500 | 7_4:+19138115 | None:intergenic |
| GAAGTGGAGAGCTTTGAGAT+TGG | 0.494282 | 7_4:-19138295 | Msa1143510:CDS |
| TGTGCTTCAGCTGATGCTGT+TGG | 0.499070 | 7_4:-19137175 | Msa1143510:three_prime_UTR |
| CCTCAATGTGGGCATCAAGC+TGG | 0.501011 | 7_4:+19137510 | None:intergenic |
| TCAGCTCTGCCGCATTGACC+AGG | 0.506358 | 7_4:+19137443 | None:intergenic |
| ATTGAGGAGCAGTTTGGTGG+TGG | 0.510507 | 7_4:-19137494 | Msa1143510:CDS |
| TGAAGGTACCATTGCTTGAA+GGG | 0.514607 | 7_4:+19138132 | None:intergenic |
| GCCCACATTGAGGAGCAGTT+TGG | 0.515176 | 7_4:-19137500 | Msa1143510:CDS |
| TGGATACCGGTAACTTCTCA+TGG | 0.515609 | 7_4:-19138275 | Msa1143510:CDS |
| CACATTGAGGAGCAGTTTGG+TGG | 0.527285 | 7_4:-19137497 | Msa1143510:CDS |
| GAAGAAACTCCAGAAGAAGA+AGG | 0.530638 | 7_4:-19137287 | Msa1143510:CDS |
| TTGCAATTTACAGGAGGCTG+AGG | 0.535370 | 7_4:-19137600 | Msa1143510:intron |
| TTAATTTCTGAATACTGCAA+TGG | 0.538804 | 7_4:-19137034 | Msa1143510:three_prime_UTR |
| GCATGCATTTCTTCACGACC+TGG | 0.542463 | 7_4:-19137461 | Msa1143510:CDS |
| GTTTAACATTCTGCTTGAGC+CGG | 0.545993 | 7_4:-19139514 | None:intergenic |
| AGGAGGATTCGTGTTAGAGG+TGG | 0.553665 | 7_4:-19138324 | Msa1143510:CDS |
| CAATGCGCTTCAACTAGCTC+CGG | 0.553709 | 7_4:+19139495 | None:intergenic |
| ATGCTGCTCCCTTCAAGCAA+TGG | 0.568267 | 7_4:-19138140 | Msa1143510:CDS |
| CTCCAGAAGAAGAAGGGCAA+GGG | 0.571076 | 7_4:-19137280 | Msa1143510:CDS |
| CAAAACTCGTTTGCTCGATG+TGG | 0.574685 | 7_4:-19138232 | Msa1143510:CDS |
| GGATACCGGTAACTTCTCAT+GGG | 0.577966 | 7_4:-19138274 | Msa1143510:CDS |
| GTCAATGCGGCAGAGCTGAT+GGG | 0.580186 | 7_4:-19137439 | Msa1143510:intron |
| CCAGCTTGATGCCCACATTG+AGG | 0.592707 | 7_4:-19137510 | Msa1143510:CDS |
| AAGAAACTCCAGAAGAAGAA+GGG | 0.596297 | 7_4:-19137286 | Msa1143510:CDS |
| ACCAAACTGCTCCTCAATGT+GGG | 0.596753 | 7_4:+19137499 | None:intergenic |
| AAATGTTAGCAAGAAAGAGG+AGG | 0.606920 | 7_4:-19138076 | Msa1143510:intron |
| CTGGTGGCAAGAAGAAAGCA+TGG | 0.611110 | 7_4:-19139291 | Msa1143510:CDS |
| ACTCCAGAAGAAGAAGGGCA+AGG | 0.618644 | 7_4:-19137281 | Msa1143510:CDS |
| CACCAAACTGCTCCTCAATG+TGG | 0.622269 | 7_4:+19137498 | None:intergenic |
| AGAGCTTTGAGATTGGATAC+CGG | 0.636809 | 7_4:-19138288 | Msa1143510:CDS |
| TTAGAGGTGGAAATGTGAAG+TGG | 0.659708 | 7_4:-19138311 | Msa1143510:CDS |
| ATGGAAACAATACAATCAAG+CGG | 0.663363 | 7_4:+19137255 | None:intergenic |
| CAATGCTTCCAACAATGAGT+TGG | 0.663472 | 7_4:-19138205 | Msa1143510:CDS |
| GTTACATCTAGGTACGAGCT+CGG | 0.663738 | 7_4:-19138390 | Msa1143510:intron |
| CACAAGAGACGTGAAACTGG+TGG | 0.674239 | 7_4:-19139307 | Msa1143510:CDS |
| TCTTCACGACCTGGTCAATG+CGG | 0.690237 | 7_4:-19137452 | Msa1143510:CDS |
| GATACCGGTAACTTCTCATG+GGG | 0.694944 | 7_4:-19138273 | Msa1143510:CDS |
| CAAGCAACAAGACAGTGAGG+AGG | 0.706786 | 7_4:-19138341 | Msa1143510:CDS |
| TATCAAGCAACAAGACAGTG+AGG | 0.731948 | 7_4:-19138344 | Msa1143510:CDS |
| GTGGCAAGAAGAAAGCATGG+AGG | 0.807428 | 7_4:-19139288 | Msa1143510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAGATTATTTTCTTATA+AGG | - | chr7_4:19137695-19137714 | Msa1143510:intron | 10.0% |
| !! | TTAAAAAGTAATCATAAATT+AGG | + | chr7_4:19138041-19138060 | None:intergenic | 10.0% |
| !! | ATTAAAAAGAGAGTAAAAAA+GGG | + | chr7_4:19137229-19137248 | None:intergenic | 15.0% |
| !! | TATTAAAAAGAGAGTAAAAA+AGG | + | chr7_4:19137230-19137249 | None:intergenic | 15.0% |
| !!! | TTTTGTTATTGTTTTAGAAA+TGG | - | chr7_4:19137316-19137335 | Msa1143510:CDS | 15.0% |
| !! | TAATTATAGCAAAAAGATAA+GGG | + | chr7_4:19137770-19137789 | None:intergenic | 15.0% |
| !! | ATAATTATAGCAAAAAGATA+AGG | + | chr7_4:19137771-19137790 | None:intergenic | 15.0% |
| !!! | TAGTTTACATTTCTATTTTT+TGG | - | chr7_4:19137820-19137839 | Msa1143510:intron | 15.0% |
| !!! | AGTTTACATTTCTATTTTTT+GGG | - | chr7_4:19137821-19137840 | Msa1143510:intron | 15.0% |
| !! | TTTCTGATAAATAATTCATT+AGG | - | chr7_4:19137873-19137892 | Msa1143510:intron | 15.0% |
| !!! | ACTTTTTAACTAAGATATTT+TGG | - | chr7_4:19138052-19138071 | Msa1143510:intron | 15.0% |
| !! | CATTATAATATCAAAGAAAA+CGG | + | chr7_4:19138467-19138486 | None:intergenic | 15.0% |
| !!! | TTTATTCATCTTAAATTTTG+TGG | - | chr7_4:19138711-19138730 | Msa1143510:intron | 15.0% |
| !! | GTATTATTTAATCCTGAAAT+GGG | - | chr7_4:19137596-19137615 | Msa1143510:intron | 20.0% |
| !! | TATTATTTAATCCTGAAATG+GGG | - | chr7_4:19137597-19137616 | Msa1143510:intron | 20.0% |
| !!! | AATTATTTTTCTCACAAACA+CGG | - | chr7_4:19137785-19137804 | Msa1143510:intron | 20.0% |
| !!! | TATTTTTTGGGATAGTTTTT+TGG | - | chr7_4:19137833-19137852 | Msa1143510:intron | 20.0% |
| !! | TTGGTTGTTTAAATGTTATT+TGG | - | chr7_4:19138563-19138582 | Msa1143510:intron | 20.0% |
| !! | TAATAATCTTTGCAATTTAC+AGG | - | chr7_4:19138858-19138877 | Msa1143510:intron | 20.0% |
| ! | ATTGATTGAAGAAGATTAGA+AGG | + | chr7_4:19137038-19137057 | None:intergenic | 25.0% |
| ! | TTCAATTCAACTTTCTCTAA+TGG | - | chr7_4:19137084-19137103 | Msa1143510:three_prime_UTR | 25.0% |
| ! | TGATTTATGTGTTGAAATTC+TGG | - | chr7_4:19137273-19137292 | Msa1143510:CDS | 25.0% |
| ! | GATTTATGTGTTGAAATTCT+GGG | - | chr7_4:19137274-19137293 | Msa1143510:CDS | 25.0% |
| !!! | TGTTATTGTTTTAGAAATGG+TGG | - | chr7_4:19137319-19137338 | Msa1143510:CDS | 25.0% |
| !!! | GTTATTGTTTTAGAAATGGT+GGG | - | chr7_4:19137320-19137339 | Msa1143510:CDS | 25.0% |
| !!! | TTCACTTTTTTTTTCAATGC+TGG | - | chr7_4:19137363-19137382 | Msa1143510:intron | 25.0% |
| !!! | CAGTGTTAGTTTTTAGATTT+TGG | - | chr7_4:19137476-19137495 | Msa1143510:CDS | 25.0% |
| ! | CGTATTATTTAATCCTGAAA+TGG | - | chr7_4:19137595-19137614 | Msa1143510:intron | 25.0% |
| ! | TGACATAATTCACAAAATCT+TGG | + | chr7_4:19137625-19137644 | None:intergenic | 25.0% |
| !! | TCAAATTGCAGTTCATATTT+TGG | - | chr7_4:19137642-19137661 | Msa1143510:intron | 25.0% |
| ! | TCTTATTGTTGTATCATATC+TGG | + | chr7_4:19137682-19137701 | None:intergenic | 25.0% |
| !!! | ATTATTTTTCTCACAAACAC+GGG | - | chr7_4:19137786-19137805 | Msa1143510:intron | 25.0% |
| ! | GTCTCAATCTTATTATTTGT+TGG | - | chr7_4:19138001-19138020 | Msa1143510:intron | 25.0% |
| !!! | ATATTTTGGTTGTTACATCT+AGG | - | chr7_4:19138066-19138085 | Msa1143510:intron | 25.0% |
| ! | TTAAAGATCAGTTAATCACT+TGG | - | chr7_4:19138494-19138513 | Msa1143510:intron | 25.0% |
| ! | AAAACCAGTATAAAAATTGC+GGG | + | chr7_4:19138545-19138564 | None:intergenic | 25.0% |
| ! | CAAAACCAGTATAAAAATTG+CGG | + | chr7_4:19138546-19138565 | None:intergenic | 25.0% |
| !! | TGTTTAAATGTTATTTGGCT+TGG | - | chr7_4:19138568-19138587 | Msa1143510:intron | 25.0% |
| !! | GTTTAAATGTTATTTGGCTT+GGG | - | chr7_4:19138569-19138588 | Msa1143510:intron | 25.0% |
| ! | AGGAAAAAAAAAAAGTTAGG+AGG | + | chr7_4:19139113-19139132 | None:intergenic | 25.0% |
| ! | TCGAGGAAAAAAAAAAAGTT+AGG | + | chr7_4:19139116-19139135 | None:intergenic | 25.0% |
| ! | ACTAATGCAATACAAAAACA+TGG | + | chr7_4:19139234-19139253 | None:intergenic | 25.0% |
| !! | ATTTTCCTTTAAACTGTTCT+TGG | - | chr7_4:19139358-19139377 | Msa1143510:intron | 25.0% |
| ! | AATAACCAAGAACAGTTTAA+AGG | + | chr7_4:19139366-19139385 | None:intergenic | 25.0% |
| ! | TGCAGTATTCAGAAATTAAT+CGG | + | chr7_4:19139432-19139451 | None:intergenic | 25.0% |
| ! | TTAATTTCTGAATACTGCAA+TGG | - | chr7_4:19139433-19139452 | Msa1143510:intron | 25.0% |
| !!! | GATTGTTGATTTTGAATCTC+AGG | - | chr7_4:19137118-19137137 | Msa1143510:three_prime_UTR | 30.0% |
| !!! | ACTTTTTTTTTCAATGCTGG+TGG | - | chr7_4:19137366-19137385 | Msa1143510:intron | 30.0% |
| !! | TTTATTGATGATGTGGGAAT+TGG | - | chr7_4:19137405-19137424 | Msa1143510:intron | 30.0% |
| !! | TTATTTTTCTCACAAACACG+GGG | - | chr7_4:19137787-19137806 | Msa1143510:intron | 30.0% |
| ATCAGAAAATATGTGCTATC+TGG | + | chr7_4:19137861-19137880 | None:intergenic | 30.0% | |
| !! | TTATTTGTTGGCTTTCTGTT+TGG | - | chr7_4:19138013-19138032 | Msa1143510:intron | 30.0% |
| GAAAAATGTTAGCAAGAAAG+AGG | - | chr7_4:19138388-19138407 | Msa1143510:intron | 30.0% | |
| !!! | CGCAATTTTTATACTGGTTT+TGG | - | chr7_4:19138544-19138563 | Msa1143510:intron | 30.0% |
| !!! | GTGGATTTAGTTTTAGATGT+CGG | - | chr7_4:19138730-19138749 | Msa1143510:intron | 30.0% |
| !!! | TGGATTTAGTTTTAGATGTC+GGG | - | chr7_4:19138731-19138750 | Msa1143510:intron | 30.0% |
| TCAGTTTCAACATATACATG+TGG | + | chr7_4:19138779-19138798 | None:intergenic | 30.0% | |
| TAATCTTTGCAATTTACAGG+AGG | - | chr7_4:19138861-19138880 | Msa1143510:intron | 30.0% | |
| ATGGAAACAATACAATCAAG+CGG | + | chr7_4:19139215-19139234 | None:intergenic | 30.0% | |
| TTCATCCAGTTTCTTCAAGA+TGG | - | chr7_4:19137003-19137022 | Msa1143510:three_prime_UTR | 35.0% | |
| TCATCCAGTTTCTTCAAGAT+GGG | - | chr7_4:19137004-19137023 | Msa1143510:three_prime_UTR | 35.0% | |
| !! | TTTGGGGTTTATTGATGATG+TGG | - | chr7_4:19137398-19137417 | Msa1143510:intron | 35.0% |
| !! | TTGGGGTTTATTGATGATGT+GGG | - | chr7_4:19137399-19137418 | Msa1143510:intron | 35.0% |
| TTGTACATGAATGTCTGAAC+TGG | - | chr7_4:19137977-19137996 | Msa1143510:intron | 35.0% | |
| TGTACATGAATGTCTGAACT+GGG | - | chr7_4:19137978-19137997 | Msa1143510:intron | 35.0% | |
| !!! | CTTGATAGTTTTGTGTTAGC+TGG | + | chr7_4:19138110-19138129 | None:intergenic | 35.0% |
| ! | TATCAACACCATAGTGTTGA+AGG | + | chr7_4:19138355-19138374 | None:intergenic | 35.0% |
| !! | CAACACTATGGTGTTGATAT+TGG | - | chr7_4:19138356-19138375 | Msa1143510:CDS | 35.0% |
| AAATGTTAGCAAGAAAGAGG+AGG | - | chr7_4:19138391-19138410 | Msa1143510:intron | 35.0% | |
| GAAAGAGGAGGTAATGTTAA+TGG | - | chr7_4:19138403-19138422 | Msa1143510:intron | 35.0% | |
| ! | TATGCCCGCAATTTTTATAC+TGG | - | chr7_4:19138538-19138557 | Msa1143510:intron | 35.0% |
| !!! | TAGTTTTAGATGTCGGGATA+AGG | - | chr7_4:19138737-19138756 | Msa1143510:intron | 35.0% |
| GTTTCAACATATACATGTGG+TGG | + | chr7_4:19138776-19138795 | None:intergenic | 35.0% | |
| ! | CTCTAATTTTCTCTGCACAT+GGG | + | chr7_4:19138920-19138939 | None:intergenic | 35.0% |
| ATATGCAGCTACATTCTTGA+AGG | - | chr7_4:19139136-19139155 | Msa1143510:intron | 35.0% | |
| AAGAAACTCCAGAAGAAGAA+GGG | - | chr7_4:19139181-19139200 | Msa1143510:intron | 35.0% | |
| GCACAAAACATCTCTTTGTT+CGG | + | chr7_4:19139277-19139296 | None:intergenic | 35.0% | |
| TGTACCCATCTTGAAGAAAC+TGG | + | chr7_4:19137011-19137030 | None:intergenic | 40.0% | |
| ! | TGCTGGTGGCTATTAGATTT+TGG | - | chr7_4:19137380-19137399 | Msa1143510:intron | 40.0% |
| ! | GCTGGTGGCTATTAGATTTT+GGG | - | chr7_4:19137381-19137400 | Msa1143510:intron | 40.0% |
| ! | CTGGTGGCTATTAGATTTTG+GGG | - | chr7_4:19137382-19137401 | Msa1143510:intron | 40.0% |
| AAATCTTGGTACCCCATTTC+AGG | + | chr7_4:19137611-19137630 | None:intergenic | 40.0% | |
| GACATTCATGTACAAAGCAC+AGG | + | chr7_4:19137972-19137991 | None:intergenic | 40.0% | |
| GTACATGAATGTCTGAACTG+GGG | - | chr7_4:19137979-19137998 | Msa1143510:intron | 40.0% | |
| !!! | ATAGTTTTGTGTTAGCTGGC+TGG | + | chr7_4:19138106-19138125 | None:intergenic | 40.0% |
| TATCAAGCAACAAGACAGTG+AGG | - | chr7_4:19138123-19138142 | Msa1143510:CDS | 40.0% | |
| TTAGAGGTGGAAATGTGAAG+TGG | - | chr7_4:19138156-19138175 | Msa1143510:CDS | 40.0% | |
| !! | AGAGCTTTGAGATTGGATAC+CGG | - | chr7_4:19138179-19138198 | Msa1143510:CDS | 40.0% |
| CAATGCTTCCAACAATGAGT+TGG | - | chr7_4:19138262-19138281 | Msa1143510:CDS | 40.0% | |
| !! | TGTGAAGAGTGCTATTGTTC+AGG | - | chr7_4:19138301-19138320 | Msa1143510:CDS | 40.0% |
| !! | TGAAGGTACCATTGCTTGAA+GGG | + | chr7_4:19138338-19138357 | None:intergenic | 40.0% |
| !! | TTGAAGGTACCATTGCTTGA+AGG | + | chr7_4:19138339-19138358 | None:intergenic | 40.0% |
| CAATGGTACCTTCAACACTA+TGG | - | chr7_4:19138344-19138363 | Msa1143510:CDS | 40.0% | |
| TTTAGATGTCGGGATAAGGT+TGG | - | chr7_4:19138741-19138760 | Msa1143510:intron | 40.0% | |
| ! | GCTCTAATTTTCTCTGCACA+TGG | + | chr7_4:19138921-19138940 | None:intergenic | 40.0% |
| AGAATGTAGCTGCATATTCG+AGG | + | chr7_4:19139133-19139152 | None:intergenic | 40.0% | |
| CAGCTACATTCTTGAAGGTA+AGG | - | chr7_4:19139141-19139160 | Msa1143510:intron | 40.0% | |
| GAAGAAACTCCAGAAGAAGA+AGG | - | chr7_4:19139180-19139199 | Msa1143510:intron | 40.0% | |
| ATGCACAAGAGACGTGAAAC+TGG | - | chr7_4:19137157-19137176 | Msa1143510:three_prime_UTR | 45.0% | |
| TTTCTCACAAACACGGGGAT+TGG | - | chr7_4:19137792-19137811 | Msa1143510:intron | 45.0% | |
| GTTACATCTAGGTACGAGCT+CGG | - | chr7_4:19138077-19138096 | Msa1143510:CDS | 45.0% | |
| !! | GAAGTGGAGAGCTTTGAGAT+TGG | - | chr7_4:19138172-19138191 | Msa1143510:CDS | 45.0% |
| TGGATACCGGTAACTTCTCA+TGG | - | chr7_4:19138192-19138211 | Msa1143510:CDS | 45.0% | |
| GGATACCGGTAACTTCTCAT+GGG | - | chr7_4:19138193-19138212 | Msa1143510:CDS | 45.0% | |
| GATACCGGTAACTTCTCATG+GGG | - | chr7_4:19138194-19138213 | Msa1143510:CDS | 45.0% | |
| ACTTCCCCATGAGAAGTTAC+CGG | + | chr7_4:19138201-19138220 | None:intergenic | 45.0% | |
| ! | CAAACGAGTTTTGCGAGTGA+CGG | + | chr7_4:19138228-19138247 | None:intergenic | 45.0% |
| CAAAACTCGTTTGCTCGATG+TGG | - | chr7_4:19138235-19138254 | Msa1143510:CDS | 45.0% | |
| AGTTCGCACCAACTCATTGT+TGG | + | chr7_4:19138273-19138292 | None:intergenic | 45.0% | |
| TTGCAATTTACAGGAGGCTG+AGG | - | chr7_4:19138867-19138886 | Msa1143510:intron | 45.0% | |
| ACCAAACTGCTCCTCAATGT+GGG | + | chr7_4:19138971-19138990 | None:intergenic | 45.0% | |
| CAATGCGCTTCAACTAGCTC+CGG | + | chr7_4:19136975-19136994 | None:intergenic | 50.0% | |
| CACAAGAGACGTGAAACTGG+TGG | - | chr7_4:19137160-19137179 | Msa1143510:three_prime_UTR | 50.0% | |
| CTGGTGGCAAGAAGAAAGCA+TGG | - | chr7_4:19137176-19137195 | Msa1143510:three_prime_UTR | 50.0% | |
| ! | GTGGCAAGAAGAAAGCATGG+AGG | - | chr7_4:19137179-19137198 | Msa1143510:three_prime_UTR | 50.0% |
| CAAGCAACAAGACAGTGAGG+AGG | - | chr7_4:19138126-19138145 | Msa1143510:CDS | 50.0% | |
| GTGAGGAGGATTCGTGTTAG+AGG | - | chr7_4:19138140-19138159 | Msa1143510:CDS | 50.0% | |
| AGGAGGATTCGTGTTAGAGG+TGG | - | chr7_4:19138143-19138162 | Msa1143510:CDS | 50.0% | |
| ATGCTGCTCCCTTCAAGCAA+TGG | - | chr7_4:19138327-19138346 | Msa1143510:CDS | 50.0% | |
| CATCAAGCTGGCGTTCTTTC+TGG | + | chr7_4:19138948-19138967 | None:intergenic | 50.0% | |
| CACCAAACTGCTCCTCAATG+TGG | + | chr7_4:19138972-19138991 | None:intergenic | 50.0% | |
| CACATTGAGGAGCAGTTTGG+TGG | - | chr7_4:19138970-19138989 | Msa1143510:intron | 50.0% | |
| ! | ATTGAGGAGCAGTTTGGTGG+TGG | - | chr7_4:19138973-19138992 | Msa1143510:intron | 50.0% |
| GCATGCATTTCTTCACGACC+TGG | - | chr7_4:19139006-19139025 | Msa1143510:intron | 50.0% | |
| TCTTCACGACCTGGTCAATG+CGG | - | chr7_4:19139015-19139034 | Msa1143510:intron | 50.0% | |
| ACTCCAGAAGAAGAAGGGCA+AGG | - | chr7_4:19139186-19139205 | Msa1143510:intron | 50.0% | |
| CTCCAGAAGAAGAAGGGCAA+GGG | - | chr7_4:19139187-19139206 | Msa1143510:intron | 50.0% | |
| TGTGCTTCAGCTGATGCTGT+TGG | - | chr7_4:19139292-19139311 | Msa1143510:CDS | 50.0% | |
| CCTCAATGTGGGCATCAAGC+TGG | + | chr7_4:19138960-19138979 | None:intergenic | 55.0% | |
| CCAGCTTGATGCCCACATTG+AGG | - | chr7_4:19138957-19138976 | Msa1143510:intron | 55.0% | |
| GCCCACATTGAGGAGCAGTT+TGG | - | chr7_4:19138967-19138986 | Msa1143510:intron | 55.0% | |
| GTCAATGCGGCAGAGCTGAT+GGG | - | chr7_4:19139028-19139047 | Msa1143510:intron | 55.0% | |
| CACCCTTGCCCTTCTTCTTC+TGG | + | chr7_4:19139192-19139211 | None:intergenic | 55.0% | |
| ! | TCAGCTCTGCCGCATTGACC+AGG | + | chr7_4:19139027-19139046 | None:intergenic | 60.0% |
| GGTCAATGCGGCAGAGCTGA+TGG | - | chr7_4:19139027-19139046 | Msa1143510:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 19136963 | 19139526 | 19136963 | ID=Msa1143510;Name=Msa1143510 |
| chr7_4 | mRNA | 19136963 | 19139526 | 19136963 | ID=Msa1143510-mRNA-1;Parent=Msa1143510;Name=Msa1143510-mRNA-1;_AED=0.20;_eAED=0.20;_QI=59|1|1|1|1|1|5|307|215 |
| chr7_4 | exon | 19136963 | 19137345 | 19136963 | ID=Msa1143510-mRNA-1:exon:4291;Parent=Msa1143510-mRNA-1 |
| chr7_4 | exon | 19137440 | 19137609 | 19137440 | ID=Msa1143510-mRNA-1:exon:4290;Parent=Msa1143510-mRNA-1 |
| chr7_4 | exon | 19138077 | 19138401 | 19138077 | ID=Msa1143510-mRNA-1:exon:4289;Parent=Msa1143510-mRNA-1 |
| chr7_4 | exon | 19139277 | 19139349 | 19139277 | ID=Msa1143510-mRNA-1:exon:4288;Parent=Msa1143510-mRNA-1 |
| chr7_4 | exon | 19139464 | 19139526 | 19139464 | ID=Msa1143510-mRNA-1:exon:4287;Parent=Msa1143510-mRNA-1 |
| chr7_4 | five_prime_UTR | 19139468 | 19139526 | 19139468 | ID=Msa1143510-mRNA-1:five_prime_utr;Parent=Msa1143510-mRNA-1 |
| chr7_4 | CDS | 19139464 | 19139467 | 19139464 | ID=Msa1143510-mRNA-1:cds;Parent=Msa1143510-mRNA-1 |
| chr7_4 | CDS | 19139277 | 19139349 | 19139277 | ID=Msa1143510-mRNA-1:cds;Parent=Msa1143510-mRNA-1 |
| chr7_4 | CDS | 19138077 | 19138401 | 19138077 | ID=Msa1143510-mRNA-1:cds;Parent=Msa1143510-mRNA-1 |
| chr7_4 | CDS | 19137440 | 19137609 | 19137440 | ID=Msa1143510-mRNA-1:cds;Parent=Msa1143510-mRNA-1 |
| chr7_4 | CDS | 19137270 | 19137345 | 19137270 | ID=Msa1143510-mRNA-1:cds;Parent=Msa1143510-mRNA-1 |
| chr7_4 | three_prime_UTR | 19136963 | 19137269 | 19136963 | ID=Msa1143510-mRNA-1:three_prime_utr;Parent=Msa1143510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
