Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407070 | XP_003597635.1 | 99.310 | 145 | 1 | 0 | 10 | 154 | 1 | 145 | 2.83e-100 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407070 | sp|Q9M0E2|RL282_ARATH | 72.028 | 143 | 40 | 0 | 10 | 152 | 1 | 143 | 1.58e-72 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407070 | G7IUL4 | 99.310 | 145 | 1 | 0 | 10 | 154 | 1 | 145 | 1.35e-100 | 294 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa1407070 | 0.840955 | 6.367348e-58 | -8.615850e-47 |
| Msa0002790 | Msa1407070 | 0.824925 | 6.195941e-54 | -8.615850e-47 |
| Msa0003780 | Msa1407070 | 0.835914 | 1.271263e-56 | -8.615850e-47 |
| Msa0022970 | Msa1407070 | 0.822996 | 1.756658e-53 | -8.615850e-47 |
| Msa0052790 | Msa1407070 | 0.840551 | 8.120595e-58 | -8.615850e-47 |
| Msa0091880 | Msa1407070 | 0.836478 | 9.140600e-57 | -8.615850e-47 |
| Msa0097580 | Msa1407070 | 0.844125 | 9.177315e-59 | -8.615850e-47 |
| Msa0116670 | Msa1407070 | 0.808394 | 3.165085e-50 | -8.615850e-47 |
| Msa1356790 | Msa1407070 | 0.829535 | 4.875557e-55 | -8.615850e-47 |
| Msa1362790 | Msa1407070 | 0.819867 | 9.266937e-53 | -8.615850e-47 |
| Msa1363330 | Msa1407070 | 0.814952 | 1.185508e-51 | -8.615850e-47 |
| Msa1366180 | Msa1407070 | 0.823934 | 1.059964e-53 | -8.615850e-47 |
| Msa1369190 | Msa1407070 | 0.823323 | 1.473218e-53 | -8.615850e-47 |
| Msa1374120 | Msa1407070 | 0.825352 | 4.911452e-54 | -8.615850e-47 |
| Msa1386600 | Msa1407070 | 0.815502 | 8.945615e-52 | -8.615850e-47 |
| Msa1407070 | Msa1448690 | 0.821984 | 3.018166e-53 | -8.615850e-47 |
| Msa0603320 | Msa1407070 | 0.800681 | 1.285930e-48 | -8.615850e-47 |
| Msa0622750 | Msa1407070 | 0.814437 | 1.541677e-51 | -8.615850e-47 |
| Msa0623200 | Msa1407070 | 0.804114 | 2.523062e-49 | -8.615850e-47 |
| Msa0712610 | Msa1407070 | 0.832579 | 8.721293e-56 | -8.615850e-47 |
| Msa0780490 | Msa1407070 | 0.809165 | 2.165697e-50 | -8.615850e-47 |
| Msa0133540 | Msa1407070 | 0.811861 | 5.664408e-51 | -8.615850e-47 |
| Msa0146340 | Msa1407070 | 0.862436 | 5.075592e-64 | -8.615850e-47 |
| Msa0173530 | Msa1407070 | 0.805178 | 1.512969e-49 | -8.615850e-47 |
| Msa0181490 | Msa1407070 | 0.806992 | 6.282975e-50 | -8.615850e-47 |
| Msa0187930 | Msa1407070 | 0.818694 | 1.715175e-52 | -8.615850e-47 |
| Msa0194540 | Msa1407070 | 0.812226 | 4.715884e-51 | -8.615850e-47 |
| Msa0202020 | Msa1407070 | 0.833692 | 4.607255e-56 | -8.615850e-47 |
| Msa0218830 | Msa1407070 | 0.807015 | 6.213967e-50 | -8.615850e-47 |
| Msa0222730 | Msa1407070 | 0.817599 | 3.033088e-52 | -8.615850e-47 |
| Msa1257510 | Msa1407070 | 0.812348 | 4.435304e-51 | -8.615850e-47 |
| Msa1273340 | Msa1407070 | 0.818347 | 2.055142e-52 | -8.615850e-47 |
| Msa1295150 | Msa1407070 | 0.825511 | 4.504413e-54 | -8.615850e-47 |
| Msa1295170 | Msa1407070 | 0.831608 | 1.515769e-55 | -8.615850e-47 |
| Msa1338190 | Msa1407070 | 0.823896 | 1.081811e-53 | -8.615850e-47 |
| Msa0481850 | Msa1407070 | 0.847146 | 1.390734e-59 | -8.615850e-47 |
| Msa1021120 | Msa1407070 | 0.807205 | 5.663792e-50 | -8.615850e-47 |
| Msa1039520 | Msa1407070 | 0.834219 | 3.401586e-56 | -8.615850e-47 |
| Msa1043690 | Msa1407070 | 0.844559 | 7.013670e-59 | -8.615850e-47 |
| Msa1080350 | Msa1407070 | 0.859801 | 3.216494e-63 | -8.615850e-47 |
| Msa1088490 | Msa1407070 | 0.819521 | 1.111816e-52 | -8.615850e-47 |
| Msa1088940 | Msa1407070 | 0.933389 | 2.023350e-95 | -8.615850e-47 |
| Msa0244780 | Msa1407070 | 0.820858 | 5.491278e-53 | -8.615850e-47 |
| Msa0250820 | Msa1407070 | 0.822268 | 2.593891e-53 | -8.615850e-47 |
| Msa0250870 | Msa1407070 | 0.809644 | 1.708559e-50 | -8.615850e-47 |
| Msa0264010 | Msa1407070 | 0.878874 | 1.971862e-69 | -8.615850e-47 |
| Msa0268130 | Msa1407070 | 0.818221 | 2.194589e-52 | -8.615850e-47 |
| Msa0298990 | Msa1407070 | 0.823024 | 1.730779e-53 | -8.615850e-47 |
| Msa0327330 | Msa1407070 | 0.826681 | 2.373792e-54 | -8.615850e-47 |
| Msa0336010 | Msa1407070 | 0.814578 | 1.434785e-51 | -8.615850e-47 |
| Msa0337670 | Msa1407070 | 0.802813 | 4.694526e-49 | -8.615850e-47 |
| Msa0348830 | Msa1407070 | 0.813615 | 2.339558e-51 | -8.615850e-47 |
| Msa1125860 | Msa1407070 | 0.858083 | 1.050667e-62 | -8.615850e-47 |
| Msa1126060 | Msa1407070 | 0.856375 | 3.356382e-62 | -8.615850e-47 |
| Msa1126470 | Msa1407070 | 0.824055 | 9.931132e-54 | -8.615850e-47 |
| Msa1173160 | Msa1407070 | 0.836210 | 1.069318e-56 | -8.615850e-47 |
| Msa1215820 | Msa1407070 | 0.838521 | 2.737520e-57 | -8.615850e-47 |
| Msa0483110 | Msa1407070 | 0.844903 | 5.666180e-59 | -8.615850e-47 |
| Msa0526540 | Msa1407070 | 0.813967 | 1.957633e-51 | -8.615850e-47 |
| Msa0573350 | Msa1407070 | 0.803498 | 3.387138e-49 | -8.615850e-47 |
| Msa0576940 | Msa1407070 | 0.811682 | 6.195475e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407070 | MtrunA17_Chr2g0330561 | 99.310 | 145 | 1 | 0 | 10 | 154 | 1 | 145 | 2.60e-104 | 294 |
| Msa1407070 | MtrunA17_Chr8g0341511 | 90.909 | 143 | 13 | 0 | 10 | 152 | 1 | 143 | 2.26e-94 | 269 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407070 | AT4G29410.1 | 72.028 | 143 | 40 | 0 | 10 | 152 | 1 | 143 | 1.61e-73 | 217 |
| Msa1407070 | AT4G29410.2 | 72.028 | 143 | 40 | 0 | 10 | 152 | 1 | 143 | 1.61e-73 | 217 |
| Msa1407070 | AT2G19730.2 | 72.727 | 143 | 39 | 0 | 10 | 152 | 1 | 143 | 9.40e-73 | 215 |
| Msa1407070 | AT2G19730.1 | 72.727 | 143 | 39 | 0 | 10 | 152 | 1 | 143 | 9.40e-73 | 215 |
| Msa1407070 | AT2G19730.3 | 72.727 | 143 | 39 | 0 | 10 | 152 | 1 | 143 | 9.40e-73 | 215 |
Find 46 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGTTCAACATTGATTAAA+TGG | 0.216671 | tig0023257:+22348 | None:intergenic |
| TTAAGATTGTAAAGATTATT+AGG | 0.248943 | tig0023257:+25422 | None:intergenic |
| AGAATGCATAAACTACAAAA+AGG | 0.256187 | tig0023257:+22617 | None:intergenic |
| TCCCATCAAACCTTTCAAAT+TGG | 0.271284 | tig0023257:+22325 | None:intergenic |
| CAAGGTTGAGTGCTGTTAAT+AGG | 0.286054 | tig0023257:-22749 | Msa1407070:CDS |
| CATCTTATTATACTTTAAAC+TGG | 0.289137 | tig0023257:-22520 | Msa1407070:three_prime_UTR |
| CAGTACCTGGACCACTTGTT+TGG | 0.329181 | tig0023257:-25523 | Msa1407070:CDS |
| ATACTAACCAGAGTATTTGT+AGG | 0.368013 | tig0023257:+25397 | None:intergenic |
| TAGAATACTGGAGTTCAGTT+TGG | 0.380104 | tig0023257:-22582 | Msa1407070:three_prime_UTR |
| GAACTCCAGTATTCTAGAAT+AGG | 0.383776 | tig0023257:+22589 | None:intergenic |
| AAACTATAGTCTATGCCATT+TGG | 0.386715 | tig0023257:+22455 | None:intergenic |
| GGCCAATTTGAAAGGTTTGA+TGG | 0.397934 | tig0023257:-22327 | Msa1407070:three_prime_UTR |
| CCATTTAATCAATGTTGAAC+AGG | 0.401273 | tig0023257:-22348 | Msa1407070:three_prime_UTR |
| AGAACCCTATTCTAGAATAC+TGG | 0.410113 | tig0023257:-22594 | Msa1407070:three_prime_UTR |
| CTGTTATGAAGAAAGAGTTT+AGG | 0.418419 | tig0023257:-24712 | Msa1407070:CDS |
| AGTACCTGGACCACTTGTTT+GGG | 0.420976 | tig0023257:-25522 | Msa1407070:CDS |
| GGCTAAGGCTGTGCAAAATC+AGG | 0.425465 | tig0023257:-24684 | Msa1407070:intron |
| AGCCTCAGAGTTGCAAAGTC+TGG | 0.433352 | tig0023257:-22726 | Msa1407070:CDS |
| AACTCCAGTATTCTAGAATA+GGG | 0.453784 | tig0023257:+22590 | None:intergenic |
| CATGTCATAATTAAACAATC+TGG | 0.459300 | tig0023257:+22285 | None:intergenic |
| AAGAAGATGGCAACAGTACC+TGG | 0.461908 | tig0023257:-25536 | Msa1407070:CDS |
| CAAAGATCAGTCTGTGTTGT+TGG | 0.477149 | tig0023257:-24786 | Msa1407070:CDS |
| GCCAATTTGAAAGGTTTGAT+GGG | 0.480399 | tig0023257:-22326 | Msa1407070:three_prime_UTR |
| ACTGTAACTATTCAGTCTGC+TGG | 0.486689 | tig0023257:-24809 | Msa1407070:CDS |
| CTGGCGCTAAGAAGAGAAAC+AGG | 0.489005 | tig0023257:-22707 | Msa1407070:CDS |
| GAAGAAAGAGTTTAGGAGGA+TGG | 0.489919 | tig0023257:-24705 | Msa1407070:CDS |
| GTTGAACAGGCCAATTTGAA+AGG | 0.517504 | tig0023257:-22335 | Msa1407070:three_prime_UTR |
| CTTAACTCCTACAAATACTC+TGG | 0.532818 | tig0023257:-25404 | Msa1407070:intron |
| TTATGAAGAAAGAGTTTAGG+AGG | 0.533464 | tig0023257:-24709 | Msa1407070:CDS |
| GATTTGTGAAGCAAAGCAGC+AGG | 0.534387 | tig0023257:+24734 | None:intergenic |
| AAGAAGAGAAACAGGCATGC+AGG | 0.536717 | tig0023257:-22699 | Msa1407070:CDS |
| AGAGTTTAGGAGGATGGCTA+AGG | 0.539424 | tig0023257:-24699 | Msa1407070:CDS |
| ATCTCCCAAACAAGTGGTCC+AGG | 0.541178 | tig0023257:+25518 | None:intergenic |
| ATCTTATTATACTTTAAACT+GGG | 0.543535 | tig0023257:-22519 | Msa1407070:three_prime_UTR |
| TTAAGAAGGCGGCTCTTGCA+AGG | 0.554765 | tig0023257:-22767 | Msa1407070:CDS |
| CAGTTTAAAGTATAATAAGA+TGG | 0.561262 | tig0023257:+22521 | None:intergenic |
| AGAGCCGCCTTCTTAAGATC+AGG | 0.566181 | tig0023257:+22774 | None:intergenic |
| CTACAGACCTGATCTTAAGA+AGG | 0.570922 | tig0023257:-22781 | Msa1407070:CDS |
| CGCCAGACTTTGCAACTCTG+AGG | 0.579160 | tig0023257:+22724 | None:intergenic |
| GGTCCGATTAATTGAAGGAG+AGG | 0.586322 | tig0023257:+22432 | None:intergenic |
| TTCACGATCTCCCAAACAAG+TGG | 0.590177 | tig0023257:+25512 | None:intergenic |
| TCATAATTAAACAATCTGGC+CGG | 0.592265 | tig0023257:+22289 | None:intergenic |
| TGTGATGTTGAGTGTCAACT+AGG | 0.622378 | tig0023257:+22377 | None:intergenic |
| TGTTGGCAACCACCAAGCCA+AGG | 0.638986 | tig0023257:-24769 | Msa1407070:CDS |
| TTGTTTGGGAGATCGTGAAG+AGG | 0.651216 | tig0023257:-25508 | Msa1407070:CDS |
| CAGACCTGATCTTAAGAAGG+CGG | 0.695458 | tig0023257:-22778 | Msa1407070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAAATTTTAAAAAAAAA+TGG | - | tig0023257:22318-22337 | Msa1407070:three_prime_UTR | 0.0% |
| !!! | TATAATAGTTTTATGATTAA+TGG | - | tig0023257:22843-22862 | Msa1407070:intron | 10.0% |
| !!! | ATAATAGTTTTATGATTAAT+GGG | - | tig0023257:22844-22863 | Msa1407070:intron | 10.0% |
| !!! | TAGCAATTTTAATTTTTTTA+TGG | - | tig0023257:23309-23328 | Msa1407070:intron | 10.0% |
| !! | ATTTCTAATTCAAAATAATT+TGG | + | tig0023257:23755-23774 | None:intergenic | 10.0% |
| !! | TTAAGATTGTAAAGATTATT+AGG | + | tig0023257:22779-22798 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTATATTCTGTGA+TGG | - | tig0023257:22890-22909 | Msa1407070:intron | 15.0% |
| !!! | TGTTTTTATTATGGTATAAT+AGG | - | tig0023257:23350-23369 | Msa1407070:intron | 15.0% |
| !! | TAGTTCAAAAATAAAACATT+TGG | - | tig0023257:23847-23866 | Msa1407070:intron | 15.0% |
| !!! | AAACTATTTTGAATTATAAG+AGG | + | tig0023257:24639-24658 | None:intergenic | 15.0% |
| !!! | AAAATAATTTTGTACCTATA+TGG | - | tig0023257:24770-24789 | Msa1407070:CDS | 15.0% |
| !! | AAACTTGAATTAAAAAATCA+AGG | + | tig0023257:25150-25169 | None:intergenic | 15.0% |
| !!! | TTATTCCAAAATAATTTGTT+GGG | + | tig0023257:25229-25248 | None:intergenic | 15.0% |
| !!! | ATTATTCCAAAATAATTTGT+TGG | + | tig0023257:25230-25249 | None:intergenic | 15.0% |
| !!! | ACAAATTATTTTGGAATAAT+TGG | - | tig0023257:25230-25249 | Msa1407070:intron | 15.0% |
| !! | ATCTTATTATACTTTAAACT+GGG | - | tig0023257:25679-25698 | Msa1407070:intron | 15.0% |
| !!! | TTCAATTTAAATTTTCCAAA+TGG | - | tig0023257:25728-25747 | Msa1407070:intron | 15.0% |
| !! | GATTTATAGCAAAATGAAAT+TGG | + | tig0023257:22492-22511 | None:intergenic | 20.0% |
| !!! | TTATCTTTGATTTTCAGATT+TGG | - | tig0023257:22594-22613 | Msa1407070:three_prime_UTR | 20.0% |
| !! | TTTGCATCTTAAAGTATAAT+GGG | - | tig0023257:22956-22975 | Msa1407070:intron | 20.0% |
| !! | ATCACATTTGATTAAAACTT+AGG | + | tig0023257:23198-23217 | None:intergenic | 20.0% |
| !!! | CTTACTTCATGTTTTTATTA+TGG | - | tig0023257:23341-23360 | Msa1407070:intron | 20.0% |
| !! | TTATTATGGTATAATAGGTT+TGG | - | tig0023257:23355-23374 | Msa1407070:intron | 20.0% |
| !!! | GTTTTCATATTTCACAATAT+TGG | - | tig0023257:23627-23646 | Msa1407070:intron | 20.0% |
| !!! | AGTTGAAAATTGTTTTGAAT+TGG | - | tig0023257:23723-23742 | Msa1407070:intron | 20.0% |
| !! | TTAGAAATATTCACGATAAT+TGG | - | tig0023257:23767-23786 | Msa1407070:intron | 20.0% |
| !!! | GTTTTATTTTTGAACTAATC+CGG | + | tig0023257:23844-23863 | None:intergenic | 20.0% |
| !! | AACATACAGATAATTTGAAT+GGG | + | tig0023257:24144-24163 | None:intergenic | 20.0% |
| !! | AAACATACAGATAATTTGAA+TGG | + | tig0023257:24145-24164 | None:intergenic | 20.0% |
| !! | ACAAAATGACTTAGATAAAA+TGG | + | tig0023257:24371-24390 | None:intergenic | 20.0% |
| !! | ATAAAAAGGTTAGATTCATT+AGG | + | tig0023257:24663-24682 | None:intergenic | 20.0% |
| !! | ACAATAAACAAGAGATAAAA+AGG | + | tig0023257:24677-24696 | None:intergenic | 20.0% |
| !!! | CAGTTTAAAGTATAATAAGA+TGG | + | tig0023257:25680-25699 | None:intergenic | 20.0% |
| !! | CATCTTATTATACTTTAAAC+TGG | - | tig0023257:25678-25697 | Msa1407070:intron | 20.0% |
| !!! | ATTTTCGTTTTGTGCTTTTT+AGG | - | tig0023257:22570-22589 | Msa1407070:three_prime_UTR | 25.0% |
| !!! | TTTTCGTTTTGTGCTTTTTA+GGG | - | tig0023257:22571-22590 | Msa1407070:three_prime_UTR | 25.0% |
| !!! | TCTTTTTTGGTTAAAGAGTT+TGG | - | tig0023257:22719-22738 | Msa1407070:CDS | 25.0% |
| ! | CTTTGCATCTTAAAGTATAA+TGG | - | tig0023257:22955-22974 | Msa1407070:intron | 25.0% |
| ! | TAAGCATTTATTATACTGCT+TGG | + | tig0023257:23151-23170 | None:intergenic | 25.0% |
| !! | AATAGTTACAGTTTTCTTGT+TGG | + | tig0023257:23381-23400 | None:intergenic | 25.0% |
| ! | ATTCATATAGTTGTCATTCT+AGG | - | tig0023257:23662-23681 | Msa1407070:intron | 25.0% |
| !!! | GAAAATTGTTTTGAATTGGT+TGG | - | tig0023257:23727-23746 | Msa1407070:intron | 25.0% |
| ! | AAAATTCGAACAAAGAAAGA+GGG | + | tig0023257:23923-23942 | None:intergenic | 25.0% |
| !!! | AGTTTTAAGTTACAAAAGAG+AGG | + | tig0023257:24105-24124 | None:intergenic | 25.0% |
| ! | ATTTACACAGATAAATCACA+TGG | + | tig0023257:24447-24466 | None:intergenic | 25.0% |
| ! | GGATTCTTCTTATATGTTAA+CGG | + | tig0023257:24822-24841 | None:intergenic | 25.0% |
| ! | ATATAAGAAGAATCCTTATG+TGG | - | tig0023257:24827-24846 | Msa1407070:CDS | 25.0% |
| ! | TATAAGAAGAATCCTTATGT+GGG | - | tig0023257:24828-24847 | Msa1407070:CDS | 25.0% |
| ! | ACATTATGAAGAGATCAAAA+GGG | + | tig0023257:24926-24945 | None:intergenic | 25.0% |
| ! | TAAATGCAAAATAGCATATG+AGG | + | tig0023257:24965-24984 | None:intergenic | 25.0% |
| !!! | AAGTTTTTATTTAGAGAAGC+TGG | - | tig0023257:25164-25183 | Msa1407070:intron | 25.0% |
| ! | AATGCATAAACTACAAAAAG+GGG | + | tig0023257:25582-25601 | None:intergenic | 25.0% |
| ! | GAATGCATAAACTACAAAAA+GGG | + | tig0023257:25583-25602 | None:intergenic | 25.0% |
| ! | AGAATGCATAAACTACAAAA+AGG | + | tig0023257:25584-25603 | None:intergenic | 25.0% |
| !! | GTTTTCTATGTTAATCTAGT+TGG | + | tig0023257:25798-25817 | None:intergenic | 25.0% |
| ! | CATGTCATAATTAAACAATC+TGG | + | tig0023257:25916-25935 | None:intergenic | 25.0% |
| TCCAAATCCAAAGCAAATTA+GGG | - | tig0023257:22463-22482 | Msa1407070:three_prime_UTR | 30.0% | |
| CTAGATCTGTATTGTGTTAT+AGG | - | tig0023257:22624-22643 | Msa1407070:three_prime_UTR | 30.0% | |
| ! | ATACTAACCAGAGTATTTGT+AGG | + | tig0023257:22804-22823 | None:intergenic | 30.0% |
| !!! | ATGGCTGTTTTTGTTGTTAA+AGG | - | tig0023257:22909-22928 | Msa1407070:intron | 30.0% |
| !!! | TGGCTGTTTTTGTTGTTAAA+GGG | - | tig0023257:22910-22929 | Msa1407070:intron | 30.0% |
| CTTGTTGAAATTAGTGAAGT+TGG | - | tig0023257:23232-23251 | Msa1407070:intron | 30.0% | |
| CTGTTATGAAGAAAGAGTTT+AGG | - | tig0023257:23486-23505 | Msa1407070:intron | 30.0% | |
| TTATGAAGAAAGAGTTTAGG+AGG | - | tig0023257:23489-23508 | Msa1407070:intron | 30.0% | |
| GAATTAGTGGTTGGAAAATT+CGG | - | tig0023257:23593-23612 | Msa1407070:intron | 30.0% | |
| ! | ATCTAGTCAAATCTTTTGCT+AGG | - | tig0023257:23693-23712 | Msa1407070:intron | 30.0% |
| !! | GTTGTTTCAGTGCATTTTAA+TGG | - | tig0023257:23810-23829 | Msa1407070:intron | 30.0% |
| !! | CATTTTAATGGAAATACTGC+CGG | - | tig0023257:23822-23841 | Msa1407070:intron | 30.0% |
| AAATTCGAACAAAGAAAGAG+GGG | + | tig0023257:23922-23941 | None:intergenic | 30.0% | |
| GAAAATTCGAACAAAGAAAG+AGG | + | tig0023257:23924-23943 | None:intergenic | 30.0% | |
| TGCAATATTATTGTTACGCT+TGG | - | tig0023257:24000-24019 | Msa1407070:intron | 30.0% | |
| ! | TGAAATTTACTTGTTACGCT+TGG | - | tig0023257:24257-24276 | Msa1407070:intron | 30.0% |
| TTCAATTATCAGATGTCGAA+AGG | + | tig0023257:24325-24344 | None:intergenic | 30.0% | |
| AGATAAATCACATGGCAATT+AGG | + | tig0023257:24439-24458 | None:intergenic | 30.0% | |
| GGATTCATCTTATATGTTAG+AGG | + | tig0023257:24525-24544 | None:intergenic | 30.0% | |
| ATATAAGATGAATCCCTATG+TGG | - | tig0023257:24530-24549 | Msa1407070:intron | 30.0% | |
| TATAAGATGAATCCCTATGT+GGG | - | tig0023257:24531-24550 | Msa1407070:intron | 30.0% | |
| ! | TGAAATTTACTTGTTACGCT+TGG | - | tig0023257:24257-24276 | Msa1407070:intron | 30.0% |
| TTGAATTATAAGAGGTCACT+AGG | + | tig0023257:24631-24650 | None:intergenic | 30.0% | |
| ATTTACACAGATAAATCGCA+TGG | + | tig0023257:24749-24768 | None:intergenic | 30.0% | |
| ! | ATTTTGTACCTATATGGACT+AGG | - | tig0023257:24776-24795 | Msa1407070:CDS | 30.0% |
| ! | TGAAATATACTTGTTACGCT+TGG | - | tig0023257:24860-24879 | Msa1407070:intron | 30.0% |
| GACATTATGAAGAGATCAAA+AGG | + | tig0023257:24927-24946 | None:intergenic | 30.0% | |
| ATTTCATTGAAGAAACCCAA+AGG | + | tig0023257:25080-25099 | None:intergenic | 30.0% | |
| ! | TGAAATTTACTTGTTACGCT+TGG | - | tig0023257:24257-24276 | Msa1407070:intron | 30.0% |
| ! | AGTCATTTGCTGCAAAATAA+AGG | + | tig0023257:25195-25214 | None:intergenic | 30.0% |
| ! | TCAAATTAGCTCATCGATTA+AGG | + | tig0023257:25357-25376 | None:intergenic | 30.0% |
| !! | AACTCCAGTATTCTAGAATA+GGG | + | tig0023257:25611-25630 | None:intergenic | 30.0% |
| AAACTATAGTCTATGCCATT+TGG | + | tig0023257:25746-25765 | None:intergenic | 30.0% | |
| TTTCCTCTCCTTCAATTAAT+CGG | - | tig0023257:25763-25782 | Msa1407070:intron | 30.0% | |
| AATTAGGTCCGATTAATTGA+AGG | + | tig0023257:25774-25793 | None:intergenic | 30.0% | |
| TGTTAATCTAGTTGGCAATT+AGG | + | tig0023257:25790-25809 | None:intergenic | 30.0% | |
| ! | CCTGTTCAACATTGATTAAA+TGG | + | tig0023257:25853-25872 | None:intergenic | 30.0% |
| CCATTTAATCAATGTTGAAC+AGG | - | tig0023257:25850-25869 | Msa1407070:intron | 30.0% | |
| TCATAATTAAACAATCTGGC+CGG | + | tig0023257:25912-25931 | None:intergenic | 30.0% | |
| GTCCAAATCCAAAGCAAATT+AGG | - | tig0023257:22462-22481 | Msa1407070:three_prime_UTR | 35.0% | |
| !! | ACCCTAATTTGCTTTGGATT+TGG | + | tig0023257:22467-22486 | None:intergenic | 35.0% |
| !! | TTGGAAACCCTAATTTGCTT+TGG | + | tig0023257:22473-22492 | None:intergenic | 35.0% |
| ! | AATACCTTGGATTGTTGTTG+AGG | + | tig0023257:22553-22572 | None:intergenic | 35.0% |
| AGCACAAAACGAAAATACCT+TGG | + | tig0023257:22566-22585 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAAGAAGA+TGG | - | tig0023257:22649-22668 | Msa1407070:three_prime_UTR | 35.0% | |
| !!! | GAAGAGGAACAACTCTTTTT+TGG | - | tig0023257:22706-22725 | Msa1407070:CDS | 35.0% |
| CTTAACTCCTACAAATACTC+TGG | - | tig0023257:22794-22813 | Msa1407070:CDS | 35.0% | |
| TGTTGTTAAAGGGTTCTGTT+TGG | - | tig0023257:22920-22939 | Msa1407070:intron | 35.0% | |
| TGTTAATGCCATGTGTATGA+TGG | - | tig0023257:23278-23297 | Msa1407070:intron | 35.0% | |
| CTATGAAACCATCATACACA+TGG | + | tig0023257:23289-23308 | None:intergenic | 35.0% | |
| TCCACACAAAGAACAAGAAT+CGG | + | tig0023257:23575-23594 | None:intergenic | 35.0% | |
| TGTTCTTTGTGTGGAATTAG+TGG | - | tig0023257:23580-23599 | Msa1407070:intron | 35.0% | |
| ATAAAACATTTGGAAACGCG+TGG | - | tig0023257:23857-23876 | Msa1407070:intron | 35.0% | |
| TGTAAGAAGGATCCATTTGT+TGG | - | tig0023257:23967-23986 | Msa1407070:intron | 35.0% | |
| GTAAGAAGGATCCATTTGTT+GGG | - | tig0023257:23968-23987 | Msa1407070:intron | 35.0% | |
| CACTGAATAAACCCAACAAA+TGG | + | tig0023257:23982-24001 | None:intergenic | 35.0% | |
| ! | TAATTTGAATGGGAGCGTAA+GGG | + | tig0023257:24134-24153 | None:intergenic | 35.0% |
| ! | ATAATTTGAATGGGAGCGTA+AGG | + | tig0023257:24135-24154 | None:intergenic | 35.0% |
| TCATTGAAGAAACCCACATA+GGG | + | tig0023257:24240-24259 | None:intergenic | 35.0% | |
| TTCATTGAAGAAACCCACAT+AGG | + | tig0023257:24241-24260 | None:intergenic | 35.0% | |
| !!! | AACCTAACATCCCTTTTTTC+TGG | - | tig0023257:24401-24420 | Msa1407070:intron | 35.0% |
| AACCAGATCACCAGAAAAAA+GGG | + | tig0023257:24414-24433 | None:intergenic | 35.0% | |
| TCATTGAAGAAACCCACATA+GGG | + | tig0023257:24240-24259 | None:intergenic | 35.0% | |
| TTCATTGAAGAAACCCACAT+AGG | + | tig0023257:24241-24260 | None:intergenic | 35.0% | |
| ! | AACCTGGTCTCTATTTTATC+TGG | - | tig0023257:24700-24719 | Msa1407070:CDS | 35.0% |
| TAAATCGCATGGTAGCAATT+AGG | + | tig0023257:24738-24757 | None:intergenic | 35.0% | |
| TCATTGAAGAAACCCACATA+AGG | + | tig0023257:24240-24259 | None:intergenic | 35.0% | |
| TTCAATCATATTAGCAGTGG+TGG | + | tig0023257:25016-25035 | None:intergenic | 35.0% | |
| GCATTCAATCATATTAGCAG+TGG | + | tig0023257:25019-25038 | None:intergenic | 35.0% | |
| TATGATTGAATGCTTCCCAT+CGG | - | tig0023257:25026-25045 | Msa1407070:intron | 35.0% | |
| !! | TAATTTGTTGGGCAGCATTT+GGG | + | tig0023257:25218-25237 | None:intergenic | 35.0% |
| !! | ATAATTTGTTGGGCAGCATT+TGG | + | tig0023257:25219-25238 | None:intergenic | 35.0% |
| ! | TGCTGCCCAACAAATTATTT+TGG | - | tig0023257:25221-25240 | Msa1407070:intron | 35.0% |
| !! | AGAACCCTATTCTAGAATAC+TGG | - | tig0023257:25604-25623 | Msa1407070:intron | 35.0% |
| !! | GAACTCCAGTATTCTAGAAT+AGG | + | tig0023257:25612-25631 | None:intergenic | 35.0% |
| TAGAATACTGGAGTTCAGTT+TGG | - | tig0023257:25616-25635 | Msa1407070:intron | 35.0% | |
| ! | TTGCGTTTTCAATACAAGAC+TGG | - | tig0023257:25650-25669 | Msa1407070:intron | 35.0% |
| GCCAATTTGAAAGGTTTGAT+GGG | - | tig0023257:25872-25891 | Msa1407070:intron | 35.0% | |
| TCCCATCAAACCTTTCAAAT+TGG | + | tig0023257:25876-25895 | None:intergenic | 35.0% | |
| CAAACACATATAGCCCACTA+AGG | + | tig0023257:22425-22444 | None:intergenic | 40.0% | |
| GAGTGAGATTTGAGAAGAAG+AGG | + | tig0023257:22529-22548 | None:intergenic | 40.0% | |
| ACTGTAACTATTCAGTCTGC+TGG | - | tig0023257:23389-23408 | Msa1407070:intron | 40.0% | |
| CAAAGATCAGTCTGTGTTGT+TGG | - | tig0023257:23412-23431 | Msa1407070:intron | 40.0% | |
| GAAGAAAGAGTTTAGGAGGA+TGG | - | tig0023257:23493-23512 | Msa1407070:intron | 40.0% | |
| CCACACAAAGAACAAGAATC+GGG | + | tig0023257:23574-23593 | None:intergenic | 40.0% | |
| CTTTGTGTGGAATTAGTGGT+TGG | - | tig0023257:23584-23603 | Msa1407070:intron | 40.0% | |
| GTTGGAAAATTCGGCTAAGT+TGG | - | tig0023257:23602-23621 | Msa1407070:intron | 40.0% | |
| CAAAGAAAGAGGGGTTCAAA+TGG | + | tig0023257:23913-23932 | None:intergenic | 40.0% | |
| TGAGCCTCTAACATGTAAGA+AGG | - | tig0023257:23954-23973 | Msa1407070:intron | 40.0% | |
| GGATCCTTCTTACATGTTAG+AGG | + | tig0023257:23961-23980 | None:intergenic | 40.0% | |
| ! | AAAGAGAGGCACGCTATTAA+CGG | + | tig0023257:24091-24110 | None:intergenic | 40.0% |
| CTGGGTAACACTAGTTGAAT+CGG | + | tig0023257:24186-24205 | None:intergenic | 40.0% | |
| ATTCAACTAGTGTTACCCAG+CGG | - | tig0023257:24186-24205 | Msa1407070:intron | 40.0% | |
| ACGTAAGAAGAATCCCTATG+TGG | - | tig0023257:24224-24243 | Msa1407070:intron | 40.0% | |
| CGTAAGAAGAATCCCTATGT+GGG | - | tig0023257:24225-24244 | Msa1407070:intron | 40.0% | |
| CACCAGAAAAAAGGGATGTT+AGG | + | tig0023257:24406-24425 | None:intergenic | 40.0% | |
| !!! | ATCCCTTTTTTCTGGTGATC+TGG | - | tig0023257:24409-24428 | Msa1407070:intron | 40.0% |
| CAACCAGATCACCAGAAAAA+AGG | + | tig0023257:24415-24434 | None:intergenic | 40.0% | |
| ! | TCTTGTTTATTGTGCGAACC+TGG | - | tig0023257:24684-24703 | Msa1407070:intron | 40.0% |
| CACCAGATAAAATAGAGACC+AGG | + | tig0023257:24705-24724 | None:intergenic | 40.0% | |
| TGAGCTGTTAACACGTAAGA+AGG | - | tig0023257:25052-25071 | Msa1407070:intron | 40.0% | |
| AACACGTAAGAAGGTTCCTT+TGG | - | tig0023257:25061-25080 | Msa1407070:intron | 40.0% | |
| ACACGTAAGAAGGTTCCTTT+GGG | - | tig0023257:25062-25081 | Msa1407070:intron | 40.0% | |
| TAGTAGTTATCTGCAACCTG+AGG | + | tig0023257:25400-25419 | None:intergenic | 40.0% | |
| CTACAGACCTGATCTTAAGA+AGG | - | tig0023257:25417-25436 | Msa1407070:CDS | 40.0% | |
| ! | CAAGGTTGAGTGCTGTTAAT+AGG | - | tig0023257:25449-25468 | Msa1407070:CDS | 40.0% |
| TGTGATGTTGAGTGTCAACT+AGG | + | tig0023257:25824-25843 | None:intergenic | 40.0% | |
| GTTGAACAGGCCAATTTGAA+AGG | - | tig0023257:25863-25882 | Msa1407070:intron | 40.0% | |
| GGCCAATTTGAAAGGTTTGA+TGG | - | tig0023257:25871-25890 | Msa1407070:intron | 40.0% | |
| ! | ATGGGAATCAGATGCTTTTC+CGG | - | tig0023257:25890-25909 | Msa1407070:intron | 40.0% |
| CAGAATCTTACATGCCGTGT+CGG | - | tig0023257:22395-22414 | Msa1407070:intron | 45.0% | |
| AGAATCTTACATGCCGTGTC+GGG | - | tig0023257:22396-22415 | Msa1407070:intron | 45.0% | |
| ! | GTTTGAAGCCCAAAATCCAG+CGG | - | tig0023257:22440-22459 | Msa1407070:intron | 45.0% |
| ! | GATTTGGACCGCTGGATTTT+GGG | + | tig0023257:22451-22470 | None:intergenic | 45.0% |
| CTCTCCTCAACAACAATCCA+AGG | - | tig0023257:22546-22565 | Msa1407070:three_prime_UTR | 45.0% | |
| AAGAAGATGGCAACAGTACC+TGG | - | tig0023257:22662-22681 | Msa1407070:three_prime_UTR | 45.0% | |
| AGTACCTGGACCACTTGTTT+GGG | - | tig0023257:22676-22695 | Msa1407070:exon | 45.0% | |
| TTCACGATCTCCCAAACAAG+TGG | + | tig0023257:22689-22708 | None:intergenic | 45.0% | |
| TTGTTTGGGAGATCGTGAAG+AGG | - | tig0023257:22690-22709 | Msa1407070:exon | 45.0% | |
| !!! | CTTGTTTTGCTTCCTTGGCT+TGG | + | tig0023257:23444-23463 | None:intergenic | 45.0% |
| GATTTGTGAAGCAAAGCAGC+AGG | + | tig0023257:23467-23486 | None:intergenic | 45.0% | |
| AGAGTTTAGGAGGATGGCTA+AGG | - | tig0023257:23499-23518 | Msa1407070:intron | 45.0% | |
| CCCGATTCTTGTTCTTTGTG+TGG | - | tig0023257:23571-23590 | Msa1407070:intron | 45.0% | |
| GTTAATAGCTCATCACCGCT+GGG | + | tig0023257:24204-24223 | None:intergenic | 45.0% | |
| TGTTAATAGCTCATCACCGC+TGG | + | tig0023257:24205-24224 | None:intergenic | 45.0% | |
| ACACCAAATCTTACTGGCAG+AGG | + | tig0023257:24485-24504 | None:intergenic | 45.0% | |
| TGGGGAACACCAAATCTTAC+TGG | + | tig0023257:24491-24510 | None:intergenic | 45.0% | |
| GGGGAAAACCTAGTCCATAT+AGG | + | tig0023257:24787-24806 | None:intergenic | 45.0% | |
| GTTAACAGCTCATCACCGAT+GGG | + | tig0023257:25044-25063 | None:intergenic | 45.0% | |
| TGTTAACAGCTCATCACCGA+TGG | + | tig0023257:25045-25064 | None:intergenic | 45.0% | |
| CAGACCTGATCTTAAGAAGG+CGG | - | tig0023257:25420-25439 | Msa1407070:CDS | 45.0% | |
| AAGAAGAGAAACAGGCATGC+AGG | - | tig0023257:25499-25518 | Msa1407070:CDS | 45.0% | |
| GGTCCGATTAATTGAAGGAG+AGG | + | tig0023257:25769-25788 | None:intergenic | 45.0% | |
| ! | GGATTTGGACCGCTGGATTT+TGG | + | tig0023257:22452-22471 | None:intergenic | 50.0% |
| ! | TTGCTTTGGATTTGGACCGC+TGG | + | tig0023257:22459-22478 | None:intergenic | 50.0% |
| CAGTACCTGGACCACTTGTT+TGG | - | tig0023257:22675-22694 | Msa1407070:exon | 50.0% | |
| ATCTCCCAAACAAGTGGTCC+AGG | + | tig0023257:22683-22702 | None:intergenic | 50.0% | |
| !!! | GTTTTGCTTCCTTGGCTTGG+TGG | + | tig0023257:23441-23460 | None:intergenic | 50.0% |
| !!! | GCAGGCTTGTTTTGCTTCCT+TGG | + | tig0023257:23449-23468 | None:intergenic | 50.0% |
| GGCTAAGGCTGTGCAAAATC+AGG | - | tig0023257:23514-23533 | Msa1407070:intron | 50.0% | |
| GTTAGAGGCTCATCACAGCA+AGG | + | tig0023257:23946-23965 | None:intergenic | 50.0% | |
| TGCAGGCAAAGGAGATCAGA+AGG | + | tig0023257:24068-24087 | None:intergenic | 50.0% | |
| GCTATTAACGGTGCAGGCAA+AGG | + | tig0023257:24079-24098 | None:intergenic | 50.0% | |
| GCACCTCTGCCAGTAAGATT+TGG | - | tig0023257:24479-24498 | Msa1407070:intron | 50.0% | |
| TTAGAGGCTCATCACTGCTG+GGG | + | tig0023257:24509-24528 | None:intergenic | 50.0% | |
| GTTAGAGGCTCATCACTGCT+GGG | + | tig0023257:24510-24529 | None:intergenic | 50.0% | |
| TGTTAGAGGCTCATCACTGC+TGG | + | tig0023257:24511-24530 | None:intergenic | 50.0% | |
| TTAACGGCTCATCACTGCTG+GGG | + | tig0023257:24806-24825 | None:intergenic | 50.0% | |
| GTTAACGGCTCATCACTGCT+GGG | + | tig0023257:24807-24826 | None:intergenic | 50.0% | |
| TGTTAACGGCTCATCACTGC+TGG | + | tig0023257:24808-24827 | None:intergenic | 50.0% | |
| AGAGCCGCCTTCTTAAGATC+AGG | + | tig0023257:25427-25446 | None:intergenic | 50.0% | |
| TTAAGAAGGCGGCTCTTGCA+AGG | - | tig0023257:25431-25450 | Msa1407070:CDS | 50.0% | |
| AGCCTCAGAGTTGCAAAGTC+TGG | - | tig0023257:25472-25491 | Msa1407070:CDS | 50.0% | |
| CTGGCGCTAAGAAGAGAAAC+AGG | - | tig0023257:25491-25510 | Msa1407070:CDS | 50.0% | |
| TGTTGGCAACCACCAAGCCA+AGG | - | tig0023257:23429-23448 | Msa1407070:intron | 55.0% | |
| AGGCACGCTATTAACGGTGC+AGG | + | tig0023257:24085-24104 | None:intergenic | 55.0% | |
| TTGCGTGTGTGATGTGCCTC+AGG | - | tig0023257:25381-25400 | Msa1407070:intron | 55.0% | |
| CGCCAGACTTTGCAACTCTG+AGG | + | tig0023257:25477-25496 | None:intergenic | 55.0% | |
| CCCACTAAGGTGACCCGACA+CGG | + | tig0023257:22412-22431 | None:intergenic | 60.0% | |
| CCGTGTCGGGTCACCTTAGT+GGG | - | tig0023257:22409-22428 | Msa1407070:intron | 60.0% | |
| GCCGTGTCGGGTCACCTTAG+TGG | - | tig0023257:22408-22427 | Msa1407070:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023257 | gene | 22281 | 25939 | 22281 | ID=Msa1407070;Name=Msa1407070 |
| tig0023257 | mRNA | 22281 | 25939 | 22281 | ID=Msa1407070-mRNA-1;Parent=Msa1407070;Name=Msa1407070-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.75|0.8|0.8|0.75|0.6|5|378|154 |
| tig0023257 | exon | 22281 | 22409 | 22281 | ID=Msa1407070-mRNA-1:exon:24875;Parent=Msa1407070-mRNA-1 |
| tig0023257 | exon | 22443 | 22817 | 22443 | ID=Msa1407070-mRNA-1:exon:24874;Parent=Msa1407070-mRNA-1 |
| tig0023257 | exon | 24685 | 24848 | 24685 | ID=Msa1407070-mRNA-1:exon:24873;Parent=Msa1407070-mRNA-1 |
| tig0023257 | exon | 25405 | 25574 | 25405 | ID=Msa1407070-mRNA-1:exon:24872;Parent=Msa1407070-mRNA-1 |
| tig0023257 | exon | 25935 | 25939 | 25935 | ID=Msa1407070-mRNA-1:exon:24871;Parent=Msa1407070-mRNA-1 |
| tig0023257 | CDS | 25935 | 25939 | 25935 | ID=Msa1407070-mRNA-1:cds;Parent=Msa1407070-mRNA-1 |
| tig0023257 | CDS | 25405 | 25574 | 25405 | ID=Msa1407070-mRNA-1:cds;Parent=Msa1407070-mRNA-1 |
| tig0023257 | CDS | 24685 | 24848 | 24685 | ID=Msa1407070-mRNA-1:cds;Parent=Msa1407070-mRNA-1 |
| tig0023257 | CDS | 22692 | 22817 | 22692 | ID=Msa1407070-mRNA-1:cds;Parent=Msa1407070-mRNA-1 |
| tig0023257 | three_prime_UTR | 22443 | 22691 | 22443 | ID=Msa1407070-mRNA-1:three_prime_utr;Parent=Msa1407070-mRNA-1 |
| tig0023257 | three_prime_UTR | 22281 | 22409 | 22281 | ID=Msa1407070-mRNA-1:three_prime_utr;Parent=Msa1407070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
