AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0348830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0348830 MtrunA17_Chr3g0081741 99.301 143 1 0 1 143 1 143 1.52e-105 297
Msa0348830 MtrunA17_Chr8g0353881 88.811 143 16 0 1 143 1 143 1.29e-97 277
Msa0348830 MtrunA17_Chr3g0081771 83.333 84 12 1 60 143 10 91 5.74e-44 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0348830 AT5G61170.1 83.099 142 24 0 1 142 1 142 1.35e-90 259
Msa0348830 AT3G02080.1 81.119 143 27 0 1 143 1 143 1.41e-90 259
Msa0348830 AT5G15520.1 83.453 139 23 0 1 139 1 139 9.55e-89 254

Find 67 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACAAAGCACAACTGAATT+AGG 0.152804 3_1:+11664254 None:intergenic
TGTGAAGACTGCAAGGTTTA+AGG 0.181111 3_1:-11663190 Msa0348830:CDS
GGTGCATTCCAGAGGATTTA+TGG 0.279212 3_1:-11662952 Msa0348830:CDS
AAGCAAATGCTAGTTGTAAC+TGG 0.290090 3_1:+11662207 None:intergenic
TTCCAGTGGCAGGAGGGATT+TGG 0.312675 3_1:-11662518 Msa0348830:CDS
CACAAAGCACAACTGAATTA+GGG 0.332745 3_1:+11664255 None:intergenic
TTCACAATATCTGTCCATTC+TGG 0.341460 3_1:+11663207 None:intergenic
GATCCAGATCCAATAGAAAT+TGG 0.346322 3_1:-11664330 None:intergenic
AGGGATTTGGACCAAGTTGC+TGG 0.349640 3_1:-11662505 Msa0348830:CDS
CCTTGGTGTCCATCTCAATA+AGG 0.385015 3_1:+11662836 None:intergenic
GACTGCAAGGTTTAAGGAGT+TGG 0.416477 3_1:-11663184 Msa0348830:CDS
ACCCCTCAAGTAGATCTTCC+TGG 0.431786 3_1:+11662987 None:intergenic
GTCCAAATCCCTCCTGCCAC+TGG 0.442468 3_1:+11662516 None:intergenic
GACTTCCACCATAAATCCTC+TGG 0.453242 3_1:+11662944 None:intergenic
ATCTACTTGAGGGGTGGACT+CGG 0.454423 3_1:-11662979 Msa0348830:CDS
AGATCCAATAGAAATTGGTT+CGG 0.476287 3_1:-11664325 None:intergenic
TCTGCTCATCTCAAAAGATC+TGG 0.481965 3_1:-11664123 Msa0348830:CDS
AACAATGCAAGACGGTTGAT+AGG 0.483949 3_1:+11662249 None:intergenic
GTGCCGCAGCTTCCATGGCC+AGG 0.485644 3_1:-11663005 Msa0348830:intron
TGCATATTATCAAGCATGAA+TGG 0.488755 3_1:-11662164 Msa0348830:three_prime_UTR
GATCCAATAGAAATTGGTTC+GGG 0.489225 3_1:-11664324 None:intergenic
GCTCTGACGTAGTACCAGTC+AGG 0.489319 3_1:+11663150 None:intergenic
TTGTGCTTTGTGAGTAGAGA+GGG 0.492581 3_1:-11664244 Msa0348830:five_prime_UTR
TAGTACCAGTCAGGGTCATA+AGG 0.498306 3_1:+11663159 None:intergenic
ACAAAACTCAACACAGATCA+AGG 0.498569 3_1:+11662466 None:intergenic
TATGGTGGAAGTCAGAGAAA+TGG 0.514768 3_1:-11662934 Msa0348830:CDS
CAAGTAGATCTTCCTGGCCA+TGG 0.517027 3_1:+11662993 None:intergenic
GGCCAGGAAGATCTACTTGA+GGG 0.518439 3_1:-11662989 Msa0348830:CDS
TTGAGGGGTGGACTCGGTGT+TGG 0.522669 3_1:-11662973 Msa0348830:CDS
GGAAGATCACTTCCAGTGGC+AGG 0.522712 3_1:-11662528 Msa0348830:CDS
AACAGTCCTTGCGGTAGCCA+TGG 0.523894 3_1:+11664182 None:intergenic
TTCTGAAATGTGAAGGTGTG+AGG 0.525053 3_1:+11664279 None:intergenic
AGCTCGAGCAAGCAAAGCAG+CGG 0.533461 3_1:-11664210 Msa0348830:five_prime_UTR
TAACAATACGTCCAGCAACT+TGG 0.533492 3_1:+11662494 None:intergenic
TGGCTCCTTATGACCCTGAC+TGG 0.535373 3_1:-11663164 Msa0348830:CDS
CCACTGCTCTTGCAGAAATG+AGG 0.542089 3_1:+11662901 None:intergenic
GACTGGTACTACGTCAGAGC+TGG 0.543992 3_1:-11663147 Msa0348830:intron
AACAGATGGAGCTTCCAGAA+TGG 0.551656 3_1:-11663221 Msa0348830:intron
TTGAAGAATGTGGCGAGCAA+TGG 0.555153 3_1:+11662876 None:intergenic
GAACATGAACCTTATTGAGA+TGG 0.561257 3_1:-11662845 Msa0348830:CDS
CTGAAATGTGAAGGTGTGAG+GGG 0.571081 3_1:+11664281 None:intergenic
TCTGAAATGTGAAGGTGTGA+GGG 0.575375 3_1:+11664280 None:intergenic
AGCAAATGCTAGTTGTAACT+GGG 0.588462 3_1:+11662208 None:intergenic
CCTCATTTCTGCAAGAGCAG+TGG 0.589477 3_1:-11662901 Msa0348830:CDS
TTTGCTTATTAACAATCATG+TGG 0.598815 3_1:-11662191 Msa0348830:three_prime_UTR
TCGGTGTTGGTGCATTCCAG+AGG 0.603387 3_1:-11662960 Msa0348830:CDS
AGATCACTTCCAGTGGCAGG+AGG 0.615298 3_1:-11662525 Msa0348830:CDS
CAGATATTGTGAAGACTGCA+AGG 0.617924 3_1:-11663197 Msa0348830:CDS
CTGCTCTTGCAGAAATGAGG+TGG 0.621206 3_1:+11662904 None:intergenic
GTTGTGCTTTGTGAGTAGAG+AGG 0.621686 3_1:-11664245 Msa0348830:five_prime_UTR
AGGAAGATCTACTTGAGGGG+TGG 0.621735 3_1:-11662985 Msa0348830:CDS
GCAAAGCAGCGGCACAACCA+TGG 0.626448 3_1:-11664199 Msa0348830:exon
CTCTGACGTAGTACCAGTCA+GGG 0.627550 3_1:+11663151 None:intergenic
TCATCTCAAAAGATCTGGCA+AGG 0.635281 3_1:-11664118 Msa0348830:intron
GCACAACCATGGCTACCGCA+AGG 0.635383 3_1:-11664188 Msa0348830:exon
TTAGGGTTTCTGAAATGTGA+AGG 0.646114 3_1:+11664272 None:intergenic
GATCACTTCCAGTGGCAGGA+GGG 0.646734 3_1:-11662524 Msa0348830:CDS
CTTATTGAGATGGACACCAA+GGG 0.649426 3_1:-11662835 Msa0348830:CDS
TGGCCAGGAAGATCTACTTG+AGG 0.650322 3_1:-11662990 Msa0348830:CDS
GGCAGGAAGATCACTTCCAG+TGG 0.650796 3_1:-11662532 Msa0348830:CDS
CCTTATTGAGATGGACACCA+AGG 0.671459 3_1:-11662836 Msa0348830:CDS
GAAGATATAACAATGCAAGA+CGG 0.672901 3_1:+11662241 None:intergenic
GCATTCCAGAGGATTTATGG+TGG 0.673361 3_1:-11662949 Msa0348830:CDS
AACATCTTGAACAGTCCTTG+CGG 0.675305 3_1:+11664173 None:intergenic
TCTGCAACTGTTGAAGAATG+TGG 0.679137 3_1:+11662866 None:intergenic
GCCAGGAAGATCTACTTGAG+GGG 0.686642 3_1:-11662988 Msa0348830:CDS
TTATTGAGATGGACACCAAG+GGG 0.704884 3_1:-11662834 Msa0348830:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTGAAG+AGG - chr3_1:11662447-11662466 Msa0348830:three_prime_UTR 10.0%
!!! TTTTTTGTTAATTTAAACAA+GGG + chr3_1:11663394-11663413 None:intergenic 10.0%
!!! TTTTTTTGTTAATTTAAACA+AGG + chr3_1:11663395-11663414 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTTGAAG+AGG - chr3_1:11662447-11662466 Msa0348830:three_prime_UTR 10.0%
!!! TTTTTTGTTAATTTAAACAA+GGG + chr3_1:11663394-11663413 None:intergenic 10.0%
!!! TTTTTTTGTTAATTTAAACA+AGG + chr3_1:11663395-11663414 None:intergenic 10.0%
!!! AAAACCAAAATGAAATTTTT+CGG + chr3_1:11662399-11662418 None:intergenic 15.0%
!!! TTAATGTTATGTTTTATGTT+AGG - chr3_1:11662605-11662624 Msa0348830:intron 15.0%
!!! ATCAAAAACATTTTTTTGTT+AGG + chr3_1:11662701-11662720 None:intergenic 15.0%
!!! TTGTTTTTGTTAATCAAATT+AGG - chr3_1:11662902-11662921 Msa0348830:CDS 15.0%
!! TAATCTATGTAATTAGAATA+AGG + chr3_1:11663026-11663045 None:intergenic 15.0%
!!! TTAACAAACAAGAATTTTAA+GGG + chr3_1:11664190-11664209 None:intergenic 15.0%
!!! AAAACCAAAATGAAATTTTT+CGG + chr3_1:11662399-11662418 None:intergenic 15.0%
!!! TTAATGTTATGTTTTATGTT+AGG - chr3_1:11662605-11662624 Msa0348830:intron 15.0%
!!! ATCAAAAACATTTTTTTGTT+AGG + chr3_1:11662701-11662720 None:intergenic 15.0%
!!! TTGTTTTTGTTAATCAAATT+AGG - chr3_1:11662902-11662921 Msa0348830:CDS 15.0%
!! TAATCTATGTAATTAGAATA+AGG + chr3_1:11663026-11663045 None:intergenic 15.0%
!!! TTAACAAACAAGAATTTTAA+GGG + chr3_1:11664190-11664209 None:intergenic 15.0%
!!! TGTTTTTGATTTGATTTGAT+TGG - chr3_1:11662711-11662730 Msa0348830:intron 20.0%
!!! CAAATTTTGAAAGTTCAAAA+GGG + chr3_1:11662994-11663013 None:intergenic 20.0%
!!! ACAAATTTTGAAAGTTCAAA+AGG + chr3_1:11662995-11663014 None:intergenic 20.0%
!! TTCTAATTACATAGATTACT+TGG - chr3_1:11663028-11663047 Msa0348830:intron 20.0%
!! TCTAATTACATAGATTACTT+GGG - chr3_1:11663029-11663048 Msa0348830:intron 20.0%
!! TTATAATGATACGAATGAAA+TGG - chr3_1:11663159-11663178 Msa0348830:CDS 20.0%
!! ATTTGAACTATACAATTACA+CGG + chr3_1:11663185-11663204 None:intergenic 20.0%
!! TTGTATAGTTCAAATTTAGT+TGG - chr3_1:11663190-11663209 Msa0348830:CDS 20.0%
!! TAACAAAAAAATAACTTTCG+AGG - chr3_1:11663404-11663423 Msa0348830:intron 20.0%
!! AACAAAAAAATAACTTTCGA+GGG - chr3_1:11663405-11663424 Msa0348830:intron 20.0%
!! TGTTAAAAACATGATATGAA+GGG + chr3_1:11663906-11663925 None:intergenic 20.0%
!! ATGTTAAAAACATGATATGA+AGG + chr3_1:11663907-11663926 None:intergenic 20.0%
!!! ATTTTATTCACTGGAATTTT+TGG - chr3_1:11664157-11664176 Msa0348830:CDS 20.0%
!!! CTTAACAAACAAGAATTTTA+AGG + chr3_1:11664191-11664210 None:intergenic 20.0%
!!! TGTTTTTGATTTGATTTGAT+TGG - chr3_1:11662711-11662730 Msa0348830:intron 20.0%
!!! CAAATTTTGAAAGTTCAAAA+GGG + chr3_1:11662994-11663013 None:intergenic 20.0%
!!! ACAAATTTTGAAAGTTCAAA+AGG + chr3_1:11662995-11663014 None:intergenic 20.0%
!! TTCTAATTACATAGATTACT+TGG - chr3_1:11663028-11663047 Msa0348830:intron 20.0%
!! TCTAATTACATAGATTACTT+GGG - chr3_1:11663029-11663048 Msa0348830:intron 20.0%
!! TTATAATGATACGAATGAAA+TGG - chr3_1:11663159-11663178 Msa0348830:CDS 20.0%
!! ATTTGAACTATACAATTACA+CGG + chr3_1:11663185-11663204 None:intergenic 20.0%
!! TTGTATAGTTCAAATTTAGT+TGG - chr3_1:11663190-11663209 Msa0348830:CDS 20.0%
!! TAACAAAAAAATAACTTTCG+AGG - chr3_1:11663404-11663423 Msa0348830:intron 20.0%
!! AACAAAAAAATAACTTTCGA+GGG - chr3_1:11663405-11663424 Msa0348830:intron 20.0%
!! TGTTAAAAACATGATATGAA+GGG + chr3_1:11663906-11663925 None:intergenic 20.0%
!! ATGTTAAAAACATGATATGA+AGG + chr3_1:11663907-11663926 None:intergenic 20.0%
!!! ATTTTATTCACTGGAATTTT+TGG - chr3_1:11664157-11664176 Msa0348830:CDS 20.0%
!!! CTTAACAAACAAGAATTTTA+AGG + chr3_1:11664191-11664210 None:intergenic 20.0%
!! TTCACCGAAAAATTTCATTT+TGG - chr3_1:11662392-11662411 Msa0348830:three_prime_UTR 25.0%
!!! ATTTGTTTTGATTTGCTTCA+TGG - chr3_1:11662471-11662490 Msa0348830:exon 25.0%
!!! TTTGTTTTGATTTGCTTCAT+GGG - chr3_1:11662472-11662491 Msa0348830:exon 25.0%
!! GTTATGTTTTATGTTAGGTT+TGG - chr3_1:11662610-11662629 Msa0348830:intron 25.0%
!!! GAACTTTCAAAATTTGTTGT+TGG - chr3_1:11662998-11663017 Msa0348830:CDS 25.0%
! CATCTGTTCATAACAAAATA+AGG + chr3_1:11663246-11663265 None:intergenic 25.0%
!!! CTTATTTTGTTATGAACAGA+TGG - chr3_1:11663244-11663263 Msa0348830:intron 25.0%
!!! GTGCTTTTATTTATAGTGAT+TGG - chr3_1:11663843-11663862 Msa0348830:intron 25.0%
!! TTGATTTTTCTTTATCACAG+TGG - chr3_1:11663926-11663945 Msa0348830:intron 25.0%
! TTTGCTTATTAACAATCATG+TGG - chr3_1:11664288-11664307 Msa0348830:five_prime_UTR 25.0%
!! TTCACCGAAAAATTTCATTT+TGG - chr3_1:11662392-11662411 Msa0348830:three_prime_UTR 25.0%
!!! ATTTGTTTTGATTTGCTTCA+TGG - chr3_1:11662471-11662490 Msa0348830:exon 25.0%
!!! TTTGTTTTGATTTGCTTCAT+GGG - chr3_1:11662472-11662491 Msa0348830:exon 25.0%
!! GTTATGTTTTATGTTAGGTT+TGG - chr3_1:11662610-11662629 Msa0348830:intron 25.0%
!!! GAACTTTCAAAATTTGTTGT+TGG - chr3_1:11662998-11663017 Msa0348830:CDS 25.0%
! CATCTGTTCATAACAAAATA+AGG + chr3_1:11663246-11663265 None:intergenic 25.0%
!!! CTTATTTTGTTATGAACAGA+TGG - chr3_1:11663244-11663263 Msa0348830:intron 25.0%
!!! GTGCTTTTATTTATAGTGAT+TGG - chr3_1:11663843-11663862 Msa0348830:intron 25.0%
!! TTGATTTTTCTTTATCACAG+TGG - chr3_1:11663926-11663945 Msa0348830:intron 25.0%
! TTTGCTTATTAACAATCATG+TGG - chr3_1:11664288-11664307 Msa0348830:five_prime_UTR 25.0%
! ACATTGCAATTTTCAACAAC+AGG + chr3_1:11663447-11663466 None:intergenic 30.0%
! TCTTGTCACATTTTATTCAC+TGG - chr3_1:11664148-11664167 Msa0348830:CDS 30.0%
GAAGATATAACAATGCAAGA+CGG + chr3_1:11664241-11664260 None:intergenic 30.0%
TGCATATTATCAAGCATGAA+TGG - chr3_1:11664315-11664334 Msa0348830:five_prime_UTR 30.0%
! ACATTGCAATTTTCAACAAC+AGG + chr3_1:11663447-11663466 None:intergenic 30.0%
! TCTTGTCACATTTTATTCAC+TGG - chr3_1:11664148-11664167 Msa0348830:CDS 30.0%
GAAGATATAACAATGCAAGA+CGG + chr3_1:11664241-11664260 None:intergenic 30.0%
TGCATATTATCAAGCATGAA+TGG - chr3_1:11664315-11664334 Msa0348830:five_prime_UTR 30.0%
!! TTAGGGTTTCTGAAATGTGA+AGG + chr3_1:11662210-11662229 None:intergenic 35.0%
CACAAAGCACAACTGAATTA+GGG + chr3_1:11662227-11662246 None:intergenic 35.0%
TCACAAAGCACAACTGAATT+AGG + chr3_1:11662228-11662247 None:intergenic 35.0%
TTACATAGATTACTTGGGCA+TGG - chr3_1:11663034-11663053 Msa0348830:intron 35.0%
TTCACAATATCTGTCCATTC+TGG + chr3_1:11663275-11663294 None:intergenic 35.0%
!! GTTTGATTTTGTGCATTTCC+TGG - chr3_1:11663367-11663386 Msa0348830:intron 35.0%
GTTAATTTAAACAAGGGACC+AGG + chr3_1:11663388-11663407 None:intergenic 35.0%
GAACATGAACCTTATTGAGA+TGG - chr3_1:11663634-11663653 Msa0348830:intron 35.0%
! TTATCTTTGTTAGCCTGCTA+CGG - chr3_1:11663678-11663697 Msa0348830:intron 35.0%
TACGGTTTACAATAGGGAAT+AGG - chr3_1:11663696-11663715 Msa0348830:intron 35.0%
AACTACTGCTCAACAAATGT+TGG + chr3_1:11663806-11663825 None:intergenic 35.0%
! TTTTTCTTTATCACAGTGGC+AGG - chr3_1:11663930-11663949 Msa0348830:intron 35.0%
ACAAAACTCAACACAGATCA+AGG + chr3_1:11664016-11664035 None:intergenic 35.0%
AGCAAATGCTAGTTGTAACT+GGG + chr3_1:11664274-11664293 None:intergenic 35.0%
AAGCAAATGCTAGTTGTAAC+TGG + chr3_1:11664275-11664294 None:intergenic 35.0%
!! TTAGGGTTTCTGAAATGTGA+AGG + chr3_1:11662210-11662229 None:intergenic 35.0%
CACAAAGCACAACTGAATTA+GGG + chr3_1:11662227-11662246 None:intergenic 35.0%
TCACAAAGCACAACTGAATT+AGG + chr3_1:11662228-11662247 None:intergenic 35.0%
TTACATAGATTACTTGGGCA+TGG - chr3_1:11663034-11663053 Msa0348830:intron 35.0%
TTCACAATATCTGTCCATTC+TGG + chr3_1:11663275-11663294 None:intergenic 35.0%
!! GTTTGATTTTGTGCATTTCC+TGG - chr3_1:11663367-11663386 Msa0348830:intron 35.0%
GTTAATTTAAACAAGGGACC+AGG + chr3_1:11663388-11663407 None:intergenic 35.0%
GAACATGAACCTTATTGAGA+TGG - chr3_1:11663634-11663653 Msa0348830:intron 35.0%
! TTATCTTTGTTAGCCTGCTA+CGG - chr3_1:11663678-11663697 Msa0348830:intron 35.0%
TACGGTTTACAATAGGGAAT+AGG - chr3_1:11663696-11663715 Msa0348830:intron 35.0%
AACTACTGCTCAACAAATGT+TGG + chr3_1:11663806-11663825 None:intergenic 35.0%
! TTTTTCTTTATCACAGTGGC+AGG - chr3_1:11663930-11663949 Msa0348830:intron 35.0%
ACAAAACTCAACACAGATCA+AGG + chr3_1:11664016-11664035 None:intergenic 35.0%
AGCAAATGCTAGTTGTAACT+GGG + chr3_1:11664274-11664293 None:intergenic 35.0%
AAGCAAATGCTAGTTGTAAC+TGG + chr3_1:11664275-11664294 None:intergenic 35.0%
! TCTGAAATGTGAAGGTGTGA+GGG + chr3_1:11662202-11662221 None:intergenic 40.0%
!! TTCTGAAATGTGAAGGTGTG+AGG + chr3_1:11662203-11662222 None:intergenic 40.0%
TTGTGCTTTGTGAGTAGAGA+GGG - chr3_1:11662235-11662254 Msa0348830:three_prime_UTR 40.0%
AACATCTTGAACAGTCCTTG+CGG + chr3_1:11662309-11662328 None:intergenic 40.0%
TCTGCTCATCTCAAAAGATC+TGG - chr3_1:11662356-11662375 Msa0348830:three_prime_UTR 40.0%
TCATCTCAAAAGATCTGGCA+AGG - chr3_1:11662361-11662380 Msa0348830:three_prime_UTR 40.0%
GTATTCAAGCTCTACTTCAC+TGG - chr3_1:11663125-11663144 Msa0348830:intron 40.0%
CAGATATTGTGAAGACTGCA+AGG - chr3_1:11663282-11663301 Msa0348830:intron 40.0%
TGTGAAGACTGCAAGGTTTA+AGG - chr3_1:11663289-11663308 Msa0348830:intron 40.0%
! TATGGTGGAAGTCAGAGAAA+TGG - chr3_1:11663545-11663564 Msa0348830:intron 40.0%
TCTGCAACTGTTGAAGAATG+TGG + chr3_1:11663616-11663635 None:intergenic 40.0%
CTTATTGAGATGGACACCAA+GGG - chr3_1:11663644-11663663 Msa0348830:intron 40.0%
TTATTGAGATGGACACCAAG+GGG - chr3_1:11663645-11663664 Msa0348830:intron 40.0%
GATAATGAGTTCTTACCCCT+TGG + chr3_1:11663663-11663682 None:intergenic 40.0%
GCTCAACAAATGTTGGTATC+AGG + chr3_1:11663799-11663818 None:intergenic 40.0%
TAACAATACGTCCAGCAACT+TGG + chr3_1:11663988-11664007 None:intergenic 40.0%
AACAATGCAAGACGGTTGAT+AGG + chr3_1:11664233-11664252 None:intergenic 40.0%
! TCTGAAATGTGAAGGTGTGA+GGG + chr3_1:11662202-11662221 None:intergenic 40.0%
!! TTCTGAAATGTGAAGGTGTG+AGG + chr3_1:11662203-11662222 None:intergenic 40.0%
TTGTGCTTTGTGAGTAGAGA+GGG - chr3_1:11662235-11662254 Msa0348830:three_prime_UTR 40.0%
AACATCTTGAACAGTCCTTG+CGG + chr3_1:11662309-11662328 None:intergenic 40.0%
TCTGCTCATCTCAAAAGATC+TGG - chr3_1:11662356-11662375 Msa0348830:three_prime_UTR 40.0%
TCATCTCAAAAGATCTGGCA+AGG - chr3_1:11662361-11662380 Msa0348830:three_prime_UTR 40.0%
GTATTCAAGCTCTACTTCAC+TGG - chr3_1:11663125-11663144 Msa0348830:intron 40.0%
CAGATATTGTGAAGACTGCA+AGG - chr3_1:11663282-11663301 Msa0348830:intron 40.0%
TGTGAAGACTGCAAGGTTTA+AGG - chr3_1:11663289-11663308 Msa0348830:intron 40.0%
! TATGGTGGAAGTCAGAGAAA+TGG - chr3_1:11663545-11663564 Msa0348830:intron 40.0%
TCTGCAACTGTTGAAGAATG+TGG + chr3_1:11663616-11663635 None:intergenic 40.0%
CTTATTGAGATGGACACCAA+GGG - chr3_1:11663644-11663663 Msa0348830:intron 40.0%
TTATTGAGATGGACACCAAG+GGG - chr3_1:11663645-11663664 Msa0348830:intron 40.0%
GATAATGAGTTCTTACCCCT+TGG + chr3_1:11663663-11663682 None:intergenic 40.0%
GCTCAACAAATGTTGGTATC+AGG + chr3_1:11663799-11663818 None:intergenic 40.0%
TAACAATACGTCCAGCAACT+TGG + chr3_1:11663988-11664007 None:intergenic 40.0%
AACAATGCAAGACGGTTGAT+AGG + chr3_1:11664233-11664252 None:intergenic 40.0%
! CTGAAATGTGAAGGTGTGAG+GGG + chr3_1:11662201-11662220 None:intergenic 45.0%
GTTGTGCTTTGTGAGTAGAG+AGG - chr3_1:11662234-11662253 Msa0348830:three_prime_UTR 45.0%
CATGGTTTCATCTCACGTGT+TGG - chr3_1:11663052-11663071 Msa0348830:intron 45.0%
AACAGATGGAGCTTCCAGAA+TGG - chr3_1:11663258-11663277 Msa0348830:intron 45.0%
GACTGCAAGGTTTAAGGAGT+TGG - chr3_1:11663295-11663314 Msa0348830:intron 45.0%
TAGTACCAGTCAGGGTCATA+AGG + chr3_1:11663323-11663342 None:intergenic 45.0%
GGTGCATTCCAGAGGATTTA+TGG - chr3_1:11663527-11663546 Msa0348830:intron 45.0%
GCATTCCAGAGGATTTATGG+TGG - chr3_1:11663530-11663549 Msa0348830:intron 45.0%
GACTTCCACCATAAATCCTC+TGG + chr3_1:11663538-11663557 None:intergenic 45.0%
TTGAAGAATGTGGCGAGCAA+TGG + chr3_1:11663606-11663625 None:intergenic 45.0%
!! CCTTGGTGTCCATCTCAATA+AGG + chr3_1:11663646-11663665 None:intergenic 45.0%
CCTTATTGAGATGGACACCA+AGG - chr3_1:11663643-11663662 Msa0348830:intron 45.0%
AGCCTGCTACGGTTTACAAT+AGG - chr3_1:11663689-11663708 Msa0348830:intron 45.0%
GCCTGCTACGGTTTACAATA+GGG - chr3_1:11663690-11663709 Msa0348830:intron 45.0%
TCCCTATTGTAAACCGTAGC+AGG + chr3_1:11663694-11663713 None:intergenic 45.0%
! CTGAAATGTGAAGGTGTGAG+GGG + chr3_1:11662201-11662220 None:intergenic 45.0%
GTTGTGCTTTGTGAGTAGAG+AGG - chr3_1:11662234-11662253 Msa0348830:three_prime_UTR 45.0%
CATGGTTTCATCTCACGTGT+TGG - chr3_1:11663052-11663071 Msa0348830:intron 45.0%
AACAGATGGAGCTTCCAGAA+TGG - chr3_1:11663258-11663277 Msa0348830:intron 45.0%
GACTGCAAGGTTTAAGGAGT+TGG - chr3_1:11663295-11663314 Msa0348830:intron 45.0%
TAGTACCAGTCAGGGTCATA+AGG + chr3_1:11663323-11663342 None:intergenic 45.0%
GGTGCATTCCAGAGGATTTA+TGG - chr3_1:11663527-11663546 Msa0348830:intron 45.0%
GCATTCCAGAGGATTTATGG+TGG - chr3_1:11663530-11663549 Msa0348830:intron 45.0%
GACTTCCACCATAAATCCTC+TGG + chr3_1:11663538-11663557 None:intergenic 45.0%
TTGAAGAATGTGGCGAGCAA+TGG + chr3_1:11663606-11663625 None:intergenic 45.0%
!! CCTTGGTGTCCATCTCAATA+AGG + chr3_1:11663646-11663665 None:intergenic 45.0%
CCTTATTGAGATGGACACCA+AGG - chr3_1:11663643-11663662 Msa0348830:intron 45.0%
AGCCTGCTACGGTTTACAAT+AGG - chr3_1:11663689-11663708 Msa0348830:intron 45.0%
GCCTGCTACGGTTTACAATA+GGG - chr3_1:11663690-11663709 Msa0348830:intron 45.0%
TCCCTATTGTAAACCGTAGC+AGG + chr3_1:11663694-11663713 None:intergenic 45.0%
CTCTGACGTAGTACCAGTCA+GGG + chr3_1:11663331-11663350 None:intergenic 50.0%
! TTTTTGTGCCGCAGCTTCCA+TGG - chr3_1:11663469-11663488 Msa0348830:intron 50.0%
CAAGTAGATCTTCCTGGCCA+TGG + chr3_1:11663489-11663508 None:intergenic 50.0%
TGGCCAGGAAGATCTACTTG+AGG - chr3_1:11663489-11663508 Msa0348830:intron 50.0%
GGCCAGGAAGATCTACTTGA+GGG - chr3_1:11663490-11663509 Msa0348830:intron 50.0%
GCCAGGAAGATCTACTTGAG+GGG - chr3_1:11663491-11663510 Msa0348830:intron 50.0%
ACCCCTCAAGTAGATCTTCC+TGG + chr3_1:11663495-11663514 None:intergenic 50.0%
AGGAAGATCTACTTGAGGGG+TGG - chr3_1:11663494-11663513 Msa0348830:intron 50.0%
! ATCTACTTGAGGGGTGGACT+CGG - chr3_1:11663500-11663519 Msa0348830:intron 50.0%
CTGCTCTTGCAGAAATGAGG+TGG + chr3_1:11663578-11663597 None:intergenic 50.0%
CCACTGCTCTTGCAGAAATG+AGG + chr3_1:11663581-11663600 None:intergenic 50.0%
CCTCATTTCTGCAAGAGCAG+TGG - chr3_1:11663578-11663597 Msa0348830:intron 50.0%
AGGGATTTGGACCAAGTTGC+TGG - chr3_1:11663974-11663993 Msa0348830:intron 50.0%
CTCTGACGTAGTACCAGTCA+GGG + chr3_1:11663331-11663350 None:intergenic 50.0%
! TTTTTGTGCCGCAGCTTCCA+TGG - chr3_1:11663469-11663488 Msa0348830:intron 50.0%
CAAGTAGATCTTCCTGGCCA+TGG + chr3_1:11663489-11663508 None:intergenic 50.0%
TGGCCAGGAAGATCTACTTG+AGG - chr3_1:11663489-11663508 Msa0348830:intron 50.0%
GGCCAGGAAGATCTACTTGA+GGG - chr3_1:11663490-11663509 Msa0348830:intron 50.0%
GCCAGGAAGATCTACTTGAG+GGG - chr3_1:11663491-11663510 Msa0348830:intron 50.0%
ACCCCTCAAGTAGATCTTCC+TGG + chr3_1:11663495-11663514 None:intergenic 50.0%
AGGAAGATCTACTTGAGGGG+TGG - chr3_1:11663494-11663513 Msa0348830:intron 50.0%
! ATCTACTTGAGGGGTGGACT+CGG - chr3_1:11663500-11663519 Msa0348830:intron 50.0%
CTGCTCTTGCAGAAATGAGG+TGG + chr3_1:11663578-11663597 None:intergenic 50.0%
CCACTGCTCTTGCAGAAATG+AGG + chr3_1:11663581-11663600 None:intergenic 50.0%
CCTCATTTCTGCAAGAGCAG+TGG - chr3_1:11663578-11663597 Msa0348830:intron 50.0%
AGGGATTTGGACCAAGTTGC+TGG - chr3_1:11663974-11663993 Msa0348830:intron 50.0%
AGCTCGAGCAAGCAAAGCAG+CGG - chr3_1:11662269-11662288 Msa0348830:three_prime_UTR 55.0%
AACAGTCCTTGCGGTAGCCA+TGG + chr3_1:11662300-11662319 None:intergenic 55.0%
TGGCTCCTTATGACCCTGAC+TGG - chr3_1:11663315-11663334 Msa0348830:intron 55.0%
GCTCTGACGTAGTACCAGTC+AGG + chr3_1:11663332-11663351 None:intergenic 55.0%
GACTGGTACTACGTCAGAGC+TGG - chr3_1:11663332-11663351 Msa0348830:intron 55.0%
!! TCGGTGTTGGTGCATTCCAG+AGG - chr3_1:11663519-11663538 Msa0348830:intron 55.0%
GGCAGGAAGATCACTTCCAG+TGG - chr3_1:11663947-11663966 Msa0348830:intron 55.0%
GGAAGATCACTTCCAGTGGC+AGG - chr3_1:11663951-11663970 Msa0348830:intron 55.0%
AGATCACTTCCAGTGGCAGG+AGG - chr3_1:11663954-11663973 Msa0348830:intron 55.0%
GATCACTTCCAGTGGCAGGA+GGG - chr3_1:11663955-11663974 Msa0348830:intron 55.0%
TTCCAGTGGCAGGAGGGATT+TGG - chr3_1:11663961-11663980 Msa0348830:intron 55.0%
AGCTCGAGCAAGCAAAGCAG+CGG - chr3_1:11662269-11662288 Msa0348830:three_prime_UTR 55.0%
AACAGTCCTTGCGGTAGCCA+TGG + chr3_1:11662300-11662319 None:intergenic 55.0%
TGGCTCCTTATGACCCTGAC+TGG - chr3_1:11663315-11663334 Msa0348830:intron 55.0%
GCTCTGACGTAGTACCAGTC+AGG + chr3_1:11663332-11663351 None:intergenic 55.0%
GACTGGTACTACGTCAGAGC+TGG - chr3_1:11663332-11663351 Msa0348830:intron 55.0%
!! TCGGTGTTGGTGCATTCCAG+AGG - chr3_1:11663519-11663538 Msa0348830:intron 55.0%
GGCAGGAAGATCACTTCCAG+TGG - chr3_1:11663947-11663966 Msa0348830:intron 55.0%
GGAAGATCACTTCCAGTGGC+AGG - chr3_1:11663951-11663970 Msa0348830:intron 55.0%
AGATCACTTCCAGTGGCAGG+AGG - chr3_1:11663954-11663973 Msa0348830:intron 55.0%
GATCACTTCCAGTGGCAGGA+GGG - chr3_1:11663955-11663974 Msa0348830:intron 55.0%
TTCCAGTGGCAGGAGGGATT+TGG - chr3_1:11663961-11663980 Msa0348830:intron 55.0%
GCAAAGCAGCGGCACAACCA+TGG - chr3_1:11662280-11662299 Msa0348830:three_prime_UTR 60.0%
GCACAACCATGGCTACCGCA+AGG - chr3_1:11662291-11662310 Msa0348830:three_prime_UTR 60.0%
CTTCCTGGCCATGGAAGCTG+CGG + chr3_1:11663480-11663499 None:intergenic 60.0%
!! TTGAGGGGTGGACTCGGTGT+TGG - chr3_1:11663506-11663525 Msa0348830:intron 60.0%
GTCCAAATCCCTCCTGCCAC+TGG + chr3_1:11663966-11663985 None:intergenic 60.0%
GCAAAGCAGCGGCACAACCA+TGG - chr3_1:11662280-11662299 Msa0348830:three_prime_UTR 60.0%
GCACAACCATGGCTACCGCA+AGG - chr3_1:11662291-11662310 Msa0348830:three_prime_UTR 60.0%
CTTCCTGGCCATGGAAGCTG+CGG + chr3_1:11663480-11663499 None:intergenic 60.0%
!! TTGAGGGGTGGACTCGGTGT+TGG - chr3_1:11663506-11663525 Msa0348830:intron 60.0%
GTCCAAATCCCTCCTGCCAC+TGG + chr3_1:11663966-11663985 None:intergenic 60.0%
GTGCCGCAGCTTCCATGGCC+AGG - chr3_1:11663474-11663493 Msa0348830:intron 70.0%
GTGCCGCAGCTTCCATGGCC+AGG - chr3_1:11663474-11663493 Msa0348830:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 11662162 11664339 11662162 ID=Msa0348830;Name=Msa0348830
chr3_1 mRNA 11662162 11664339 11662162 ID=Msa0348830-mRNA-1;Parent=Msa0348830;Name=Msa0348830-mRNA-1;_AED=0.07;_eAED=0.07;_QI=137|1|1|1|1|1|4|321|143
chr3_1 exon 11662162 11662555 11662162 ID=Msa0348830-mRNA-1:exon:3083;Parent=Msa0348830-mRNA-1
chr3_1 exon 11662835 11663018 11662835 ID=Msa0348830-mRNA-1:exon:3082;Parent=Msa0348830-mRNA-1
chr3_1 exon 11663148 11663238 11663148 ID=Msa0348830-mRNA-1:exon:3081;Parent=Msa0348830-mRNA-1
chr3_1 exon 11664119 11664339 11664119 ID=Msa0348830-mRNA-1:exon:3080;Parent=Msa0348830-mRNA-1
chr3_1 five_prime_UTR 11664203 11664339 11664203 ID=Msa0348830-mRNA-1:five_prime_utr;Parent=Msa0348830-mRNA-1
chr3_1 CDS 11664119 11664202 11664119 ID=Msa0348830-mRNA-1:cds;Parent=Msa0348830-mRNA-1
chr3_1 CDS 11663148 11663238 11663148 ID=Msa0348830-mRNA-1:cds;Parent=Msa0348830-mRNA-1
chr3_1 CDS 11662835 11663018 11662835 ID=Msa0348830-mRNA-1:cds;Parent=Msa0348830-mRNA-1
chr3_1 CDS 11662483 11662555 11662483 ID=Msa0348830-mRNA-1:cds;Parent=Msa0348830-mRNA-1
chr3_1 three_prime_UTR 11662162 11662482 11662162 ID=Msa0348830-mRNA-1:three_prime_utr;Parent=Msa0348830-mRNA-1
Gene Sequence

>Msa0348830

ATGGCTACCGCAAGGACTGTTCAAGATGTTTCTTCACACGAGTTTGTCAAAGCTTACTCTGCTCATCTCAAAAGATCTGGCAAGATGGAGCTTCCAGAATGGACAGATATTGTGAAGACTGCAAGGTTTAAGGAGTTGGCTCCTTATGACCCTGACTGGTACTACGTCAGAGCTGCTTCCATGGCCAGGAAGATCTACTTGAGGGGTGGACTCGGTGTTGGTGCATTCCAGAGGATTTATGGTGGAAGTCAGAGAAATGGCAGTCGTCCACCTCATTTCTGCAAGAGCAGTGGTTCCATTGCTCGCCACATTCTTCAACAGTTGCAGAACATGAACCTTATTGAGATGGACACCAAGGGTGGCAGGAAGATCACTTCCAGTGGCAGGAGGGATTTGGACCAAGTTGCTGGACGTATTGTTATTGCACCTTGA

Protein sequence

>Msa0348830

MATARTVQDVSSHEFVKAYSAHLKRSGKMELPEWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSQRNGSRPPHFCKSSGSIARHILQQLQNMNLIEMDTKGGRKITSSGRRDLDQVAGRIVIAP*