AlfalfaGEDB | Msa1427560

M. sativa cultivar zhongmu-4 / Msa1427560

KEGG: K02901
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0032991 GO:0042788 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904
PFAM: PF01777.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1427560	XP_003594893.2	100.000	135	0	0	1	135	1	135	4.88e-91	270

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1427560	sp\|Q05462\|RL27_PEA	89.630	135	14	0	1	135	1	135	2.39e-84	245

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1427560	G7IG15	100.000	135	0	0	1	135	1	135	2.33e-91	270

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002750	Msa1427560	0.858456	8.137317e-63	-8.615850e-47
Msa0002790	Msa1427560	0.881120	3.125340e-70	-8.615850e-47
Msa0003780	Msa1427560	0.818934	1.512444e-52	-8.615850e-47
Msa0007850	Msa1427560	0.819531	1.105947e-52	-8.615850e-47
Msa0022970	Msa1427560	0.869553	2.840561e-66	-8.615850e-47
Msa0027260	Msa1427560	0.860814	1.589082e-63	-8.615850e-47
Msa0031510	Msa1427560	0.844243	8.530767e-59	-8.615850e-47
Msa0032260	Msa1427560	0.821815	3.303205e-53	-8.615850e-47
Msa0032810	Msa1427560	0.842089	3.198579e-58	-8.615850e-47
Msa0033880	Msa1427560	0.820827	5.583100e-53	-8.615850e-47
Msa0040690	Msa1427560	0.836121	1.126733e-56	-8.615850e-47
Msa0042280	Msa1427560	0.830942	2.210307e-55	-8.615850e-47
Msa0045730	Msa1427560	0.887154	1.830679e-72	-8.615850e-47
Msa0046830	Msa1427560	0.825976	3.494521e-54	-8.615850e-47
Msa0047160	Msa1427560	0.850673	1.458394e-60	-8.615850e-47
Msa0048180	Msa1427560	0.873972	9.709586e-68	-8.615850e-47
Msa0052350	Msa1427560	-0.808707	2.712875e-50	-8.615850e-47
Msa0052610	Msa1427560	0.804361	2.241473e-49	-8.615850e-47
Msa0052690	Msa1427560	0.822975	1.776116e-53	-8.615850e-47
Msa0052790	Msa1427560	0.802081	6.643201e-49	-8.615850e-47
Msa0074030	Msa1427560	0.846092	2.698706e-59	-8.615850e-47
Msa0074320	Msa1427560	0.825727	4.004458e-54	-8.615850e-47
Msa0076040	Msa1427560	0.844330	8.084314e-59	-8.615850e-47
Msa0076760	Msa1427560	0.804180	2.444460e-49	-8.615850e-47
Msa0077010	Msa1427560	0.809755	1.617357e-50	-8.615850e-47
Msa0077530	Msa1427560	0.800586	1.344256e-48	-8.615850e-47
Msa0086750	Msa1427560	0.804074	2.572243e-49	-8.615850e-47
Msa0094470	Msa1427560	0.836151	1.106915e-56	-8.615850e-47
Msa0094950	Msa1427560	0.806393	8.408526e-50	-8.615850e-47
Msa0097580	Msa1427560	0.842155	3.073467e-58	-8.615850e-47
Msa0097600	Msa1427560	0.831326	1.778641e-55	-8.615850e-47
Msa0116130	Msa1427560	0.918979	7.974071e-87	-8.615850e-47
Msa0116670	Msa1427560	0.883729	3.504990e-71	-8.615850e-47
Msa0118710	Msa1427560	0.888119	7.832928e-73	-8.615850e-47
Msa1349570	Msa1427560	0.922123	1.480138e-88	-8.615850e-47
Msa1355700	Msa1427560	0.834238	3.364267e-56	-8.615850e-47
Msa1356790	Msa1427560	0.826968	2.026969e-54	-8.615850e-47
Msa1362790	Msa1427560	0.880306	6.117774e-70	-8.615850e-47
Msa1363330	Msa1427560	0.913552	5.390203e-84	-8.615850e-47
Msa1363860	Msa1427560	0.826124	3.221531e-54	-8.615850e-47
Msa1366180	Msa1427560	0.852150	5.575867e-61	-8.615850e-47
Msa1369190	Msa1427560	0.896182	4.715965e-76	-8.615850e-47
Msa1374060	Msa1427560	0.803179	3.944927e-49	-8.615850e-47
Msa1374120	Msa1427560	0.829691	4.467239e-55	-8.615850e-47
Msa1374240	Msa1427560	0.807137	5.854781e-50	-8.615850e-47
Msa1379760	Msa1427560	0.880182	6.778108e-70	-8.615850e-47
Msa1386600	Msa1427560	0.912861	1.198759e-83	-8.615850e-47
Msa1387410	Msa1427560	0.874498	6.446023e-68	-8.615850e-47
Msa1394290	Msa1427560	0.830090	3.572358e-55	-8.615850e-47
Msa1397940	Msa1427560	0.805021	1.632271e-49	-8.615850e-47
Msa1399530	Msa1427560	0.824454	8.000265e-54	-8.615850e-47
Msa1401390	Msa1427560	0.847673	9.966949e-60	-8.615850e-47
Msa1404190	Msa1427560	0.819458	1.149201e-52	-8.615850e-47
Msa1406040	Msa1427560	0.820786	5.704645e-53	-8.615850e-47
Msa1406080	Msa1427560	0.837268	5.745555e-57	-8.615850e-47
Msa1410440	Msa1427560	0.853360	2.515687e-61	-8.615850e-47
Msa1411500	Msa1427560	0.806458	8.146364e-50	-8.615850e-47
Msa1413500	Msa1427560	0.911742	4.306597e-83	-8.615850e-47
Msa1418960	Msa1427560	-0.806039	9.984057e-50	-8.615850e-47
Msa1425670	Msa1427560	0.801376	9.270779e-49	-8.615850e-47
Msa1426120	Msa1427560	0.808355	3.226358e-50	-8.615850e-47
Msa1426370	Msa1427560	0.837919	3.911364e-57	-8.615850e-47
Msa1426490	Msa1427560	0.900388	7.699173e-78	-8.615850e-47
Msa1427560	Msa1432700	0.825986	3.474484e-54	-8.615850e-47
Msa1427560	Msa1433310	0.825579	4.340347e-54	-8.615850e-47
Msa1427560	Msa1442850	0.833967	3.934363e-56	-8.615850e-47
Msa1427560	Msa1443300	0.807275	5.472231e-50	-8.615850e-47
Msa1427560	Msa1448690	0.894469	2.394366e-75	-8.615850e-47
Msa1427560	Msa1450280	0.899868	1.293737e-77	-8.615850e-47
Msa1427560	Msa1455950	0.847544	1.081202e-59	-8.615850e-47
Msa1427560	Msa1456050	0.841276	5.242931e-58	-8.615850e-47
Msa1427560	Msa1462860	0.858314	8.971965e-63	-8.615850e-47
Msa1427560	Msa1465080	0.806945	6.427212e-50	-8.615850e-47
Msa1427560	Msa1465260	0.850809	1.335936e-60	-8.615850e-47
Msa0603320	Msa1427560	0.856503	3.079089e-62	-8.615850e-47
Msa0609000	Msa1427560	0.817071	3.987124e-52	-8.615850e-47
Msa0610390	Msa1427560	0.841776	3.870705e-58	-8.615850e-47
Msa0615440	Msa1427560	0.840375	9.030427e-58	-8.615850e-47
Msa0615580	Msa1427560	0.878922	1.896677e-69	-8.615850e-47
Msa0618930	Msa1427560	0.806609	7.571026e-50	-8.615850e-47
Msa0620890	Msa1427560	0.810963	8.874805e-51	-8.615850e-47
Msa0620990	Msa1427560	0.846313	2.349950e-59	-8.615850e-47
Msa0621950	Msa1427560	0.820762	5.780089e-53	-8.615850e-47
Msa0622750	Msa1427560	0.854631	1.082360e-61	-8.615850e-47
Msa0623200	Msa1427560	0.903783	2.428153e-79	-8.615850e-47
Msa0631250	Msa1427560	0.826187	3.112317e-54	-8.615850e-47
Msa0633570	Msa1427560	0.805881	1.077490e-49	-8.615850e-47
Msa0650920	Msa1427560	0.834824	2.397605e-56	-8.615850e-47
Msa0654870	Msa1427560	0.865823	4.465047e-65	-8.615850e-47
Msa0659030	Msa1427560	0.846870	1.654952e-59	-8.615850e-47
Msa0661300	Msa1427560	0.813290	2.759211e-51	-8.615850e-47
Msa0666230	Msa1427560	0.890332	1.084686e-73	-8.615850e-47
Msa0669520	Msa1427560	0.804687	1.916491e-49	-8.615850e-47
Msa0677290	Msa1427560	0.818812	1.612268e-52	-8.615850e-47
Msa0687630	Msa1427560	0.826627	2.445487e-54	-8.615850e-47
Msa0694990	Msa1427560	0.804845	1.776763e-49	-8.615850e-47
Msa0698490	Msa1427560	0.838079	3.557877e-57	-8.615850e-47
Msa0698660	Msa1427560	0.840948	6.391625e-58	-8.615850e-47
Msa0705000	Msa1427560	0.866464	2.798425e-65	-8.615850e-47
Msa0705040	Msa1427560	0.869408	3.166257e-66	-8.615850e-47
Msa0706500	Msa1427560	0.841131	5.723387e-58	-8.615850e-47
Msa0707390	Msa1427560	0.835449	1.666869e-56	-8.615850e-47
Msa0709780	Msa1427560	0.815089	1.105195e-51	-8.615850e-47
Msa0712610	Msa1427560	0.828345	9.467684e-55	-8.615850e-47
Msa0717380	Msa1427560	0.815976	7.015506e-52	-8.615850e-47
Msa0719420	Msa1427560	0.847291	1.268742e-59	-8.615850e-47
Msa0726090	Msa1427560	0.805060	1.601764e-49	-8.615850e-47
Msa0729200	Msa1427560	0.908810	1.137150e-81	-8.615850e-47
Msa0738100	Msa1427560	0.878329	3.067281e-69	-8.615850e-47
Msa0750920	Msa1427560	0.831905	1.280316e-55	-8.615850e-47
Msa0752910	Msa1427560	0.800046	1.731701e-48	-8.615850e-47
Msa0753140	Msa1427560	0.830496	2.843115e-55	-8.615850e-47
Msa0755340	Msa1427560	0.801688	8.002364e-49	-8.615850e-47
Msa0766080	Msa1427560	0.829380	5.316976e-55	-8.615850e-47
Msa0769590	Msa1427560	0.912490	1.834168e-83	-8.615850e-47
Msa0780490	Msa1427560	0.811852	5.689500e-51	-8.615850e-47
Msa0781080	Msa1427560	0.811680	6.203296e-51	-8.615850e-47
Msa0783630	Msa1427560	0.838057	3.605987e-57	-8.615850e-47
Msa0785130	Msa1427560	0.922261	1.236887e-88	-8.615850e-47
Msa0789680	Msa1427560	0.846649	1.902156e-59	-8.615850e-47
Msa0790400	Msa1427560	0.813903	2.022518e-51	-8.615850e-47
Msa0794050	Msa1427560	0.807380	5.200028e-50	-8.615850e-47
Msa0802410	Msa1427560	0.837429	5.225237e-57	-8.615850e-47
Msa0804250	Msa1427560	0.814981	1.168094e-51	-8.615850e-47
Msa0805500	Msa1427560	0.821710	3.493055e-53	-8.615850e-47
Msa0806880	Msa1427560	0.913378	6.593777e-84	-8.615850e-47
Msa0808800	Msa1427560	0.812171	4.848762e-51	-8.615850e-47
Msa0817540	Msa1427560	0.903921	2.102916e-79	-8.615850e-47
Msa0819540	Msa1427560	0.811619	6.393947e-51	-8.615850e-47
Msa0827380	Msa1427560	0.829038	6.438249e-55	-8.615850e-47
Msa0124690	Msa1427560	0.803533	3.332133e-49	-8.615850e-47
Msa0126520	Msa1427560	0.839084	1.957619e-57	-8.615850e-47
Msa0127310	Msa1427560	0.842419	2.615836e-58	-8.615850e-47
Msa0127850	Msa1427560	0.812320	4.499840e-51	-8.615850e-47
Msa0128860	Msa1427560	0.871565	6.202298e-67	-8.615850e-47
Msa0133540	Msa1427560	0.861637	8.917758e-64	-8.615850e-47
Msa0137610	Msa1427560	-0.801272	9.739103e-49	-8.615850e-47
Msa0138920	Msa1427560	0.820347	7.195649e-53	-8.615850e-47
Msa0146280	Msa1427560	0.804937	1.699453e-49	-8.615850e-47
Msa0146340	Msa1427560	0.829539	4.865256e-55	-8.615850e-47
Msa0163760	Msa1427560	0.809654	1.700062e-50	-8.615850e-47
Msa0165950	Msa1427560	0.851602	7.977435e-61	-8.615850e-47
Msa0166750	Msa1427560	0.826543	2.561485e-54	-8.615850e-47
Msa0167480	Msa1427560	0.879747	9.679433e-70	-8.615850e-47
Msa0173530	Msa1427560	0.880656	4.584856e-70	-8.615850e-47
Msa0174000	Msa1427560	0.817030	4.073784e-52	-8.615850e-47
Msa0174730	Msa1427560	0.870372	1.534208e-66	-8.615850e-47
Msa0174770	Msa1427560	0.804631	1.969407e-49	-8.615850e-47
Msa0177360	Msa1427560	0.809768	1.607099e-50	-8.615850e-47
Msa0180020	Msa1427560	0.899654	1.600644e-77	-8.615850e-47
Msa0181490	Msa1427560	0.852121	5.682602e-61	-8.615850e-47
Msa0181610	Msa1427560	0.853510	2.278719e-61	-8.615850e-47
Msa0187690	Msa1427560	0.824934	6.166203e-54	-8.615850e-47
Msa0187930	Msa1427560	0.902093	1.378228e-78	-8.615850e-47
Msa0188350	Msa1427560	0.819477	1.138079e-52	-8.615850e-47
Msa0189700	Msa1427560	0.810260	1.259056e-50	-8.615850e-47
Msa0194540	Msa1427560	0.898936	3.253566e-77	-8.615850e-47
Msa0199690	Msa1427560	0.815104	1.096545e-51	-8.615850e-47
Msa0199880	Msa1427560	0.824496	7.823214e-54	-8.615850e-47
Msa0202020	Msa1427560	0.849641	2.838351e-60	-8.615850e-47
Msa0218830	Msa1427560	0.859014	5.543519e-63	-8.615850e-47
Msa0219120	Msa1427560	0.883005	6.466174e-71	-8.615850e-47
Msa0221030	Msa1427560	0.908837	1.104611e-81	-8.615850e-47
Msa0224560	Msa1427560	0.824871	6.380958e-54	-8.615850e-47
Msa0230490	Msa1427560	0.837438	5.197504e-57	-8.615850e-47
Msa0230520	Msa1427560	0.809941	1.474970e-50	-8.615850e-47
Msa0231100	Msa1427560	0.879810	9.193074e-70	-8.615850e-47
Msa0231660	Msa1427560	0.820568	6.405111e-53	-8.615850e-47
Msa0232010	Msa1427560	0.807284	5.448741e-50	-8.615850e-47
Msa0232080	Msa1427560	0.811054	8.482313e-51	-8.615850e-47
Msa1227690	Msa1427560	0.863810	1.908348e-64	-8.615850e-47
Msa1230580	Msa1427560	0.869966	2.082551e-66	-8.615850e-47
Msa1241190	Msa1427560	0.834860	2.347522e-56	-8.615850e-47
Msa1257510	Msa1427560	0.860787	1.618934e-63	-8.615850e-47
Msa1258710	Msa1427560	0.841016	6.134945e-58	-8.615850e-47
Msa1260530	Msa1427560	0.829310	5.530000e-55	-8.615850e-47
Msa1262890	Msa1427560	0.835118	2.020890e-56	-8.615850e-47
Msa1265630	Msa1427560	0.848759	4.995785e-60	-8.615850e-47
Msa1266060	Msa1427560	0.853025	3.137928e-61	-8.615850e-47
Msa1270620	Msa1427560	0.831245	1.861697e-55	-8.615850e-47
Msa1270690	Msa1427560	0.821932	3.104332e-53	-8.615850e-47
Msa1271580	Msa1427560	0.814812	1.273218e-51	-8.615850e-47
Msa1272460	Msa1427560	0.810880	9.250325e-51	-8.615850e-47
Msa1276930	Msa1427560	0.812842	3.458121e-51	-8.615850e-47
Msa1281190	Msa1427560	0.814039	1.887546e-51	-8.615850e-47
Msa1294840	Msa1427560	0.844742	6.261597e-59	-8.615850e-47
Msa1299590	Msa1427560	0.815474	9.073538e-52	-8.615850e-47
Msa1305050	Msa1427560	0.817325	3.497276e-52	-8.615850e-47
Msa1306990	Msa1427560	0.809404	1.924356e-50	-8.615850e-47
Msa1310690	Msa1427560	0.802677	5.008050e-49	-8.615850e-47
Msa1316680	Msa1427560	0.823188	1.584404e-53	-8.615850e-47
Msa1329300	Msa1427560	0.840931	6.458967e-58	-8.615850e-47
Msa1329540	Msa1427560	0.808657	2.780955e-50	-8.615850e-47
Msa1331710	Msa1427560	0.874858	4.862099e-68	-8.615850e-47
Msa1338190	Msa1427560	0.824277	8.807747e-54	-8.615850e-47
Msa1343260	Msa1427560	0.837533	4.915705e-57	-8.615850e-47
Msa1343290	Msa1427560	0.827701	1.352611e-54	-8.615850e-47
Msa0369450	Msa1427560	0.814532	1.468756e-51	-8.615850e-47
Msa0370160	Msa1427560	-0.835423	1.692727e-56	-8.615850e-47
Msa0393370	Msa1427560	0.802903	4.499060e-49	-8.615850e-47
Msa0423750	Msa1427560	0.832192	1.087302e-55	-8.615850e-47
Msa0435370	Msa1427560	0.810364	1.196092e-50	-8.615850e-47
Msa0436200	Msa1427560	0.800001	1.768836e-48	-8.615850e-47
Msa0437690	Msa1427560	-0.836771	7.698936e-57	-8.615850e-47
Msa0443390	Msa1427560	0.895673	7.665200e-76	-8.615850e-47
Msa0458060	Msa1427560	0.808715	2.702806e-50	-8.615850e-47
Msa0481850	Msa1427560	0.824292	8.735999e-54	-8.615850e-47
Msa0979810	Msa1427560	0.816505	5.343126e-52	-8.615850e-47
Msa0989540	Msa1427560	0.811323	7.413926e-51	-8.615850e-47
Msa0997430	Msa1427560	0.803602	3.224158e-49	-8.615850e-47
Msa1006840	Msa1427560	0.836336	9.933258e-57	-8.615850e-47
Msa1008720	Msa1427560	0.813648	2.301058e-51	-8.615850e-47
Msa1012740	Msa1427560	0.802584	5.234725e-49	-8.615850e-47
Msa1017510	Msa1427560	0.813415	2.589725e-51	-8.615850e-47
Msa1019240	Msa1427560	0.916370	1.933953e-85	-8.615850e-47
Msa1019260	Msa1427560	0.911376	6.524327e-83	-8.615850e-47
Msa1025940	Msa1427560	0.809659	1.696046e-50	-8.615850e-47
Msa1039520	Msa1427560	0.852407	4.711897e-61	-8.615850e-47
Msa1043690	Msa1427560	0.825861	3.720551e-54	-8.615850e-47
Msa1070390	Msa1427560	0.830865	2.308325e-55	-8.615850e-47
Msa1072710	Msa1427560	0.899630	1.638269e-77	-8.615850e-47
Msa1078870	Msa1427560	0.802163	6.390569e-49	-8.615850e-47
Msa1080350	Msa1427560	0.834250	3.340306e-56	-8.615850e-47
Msa1081150	Msa1427560	0.832706	8.110965e-56	-8.615850e-47
Msa1088490	Msa1427560	0.870088	1.899735e-66	-8.615850e-47
Msa1094380	Msa1427560	0.810202	1.295800e-50	-8.615850e-47
Msa1104140	Msa1427560	0.870344	1.566638e-66	-8.615850e-47
Msa1104210	Msa1427560	0.895719	7.332447e-76	-8.615850e-47
Msa0243140	Msa1427560	0.802754	4.828510e-49	-8.615850e-47
Msa0244780	Msa1427560	0.907844	3.263971e-81	-8.615850e-47
Msa0245060	Msa1427560	0.817636	2.976173e-52	-8.615850e-47
Msa0258850	Msa1427560	0.882858	7.320642e-71	-8.615850e-47
Msa0260240	Msa1427560	0.809712	1.652009e-50	-8.615850e-47
Msa0260280	Msa1427560	0.808006	3.828558e-50	-8.615850e-47
Msa0262310	Msa1427560	0.808306	3.303966e-50	-8.615850e-47
Msa0262480	Msa1427560	0.920356	1.420028e-87	-8.615850e-47
Msa0268130	Msa1427560	0.890770	7.293888e-74	-8.615850e-47
Msa0269180	Msa1427560	0.839761	1.306272e-57	-8.615850e-47
Msa0280430	Msa1427560	0.847764	9.404501e-60	-8.615850e-47
Msa0289580	Msa1427560	0.862475	4.937181e-64	-8.615850e-47
Msa0289610	Msa1427560	0.875760	2.390599e-68	-8.615850e-47
Msa0291520	Msa1427560	0.828281	9.811498e-55	-8.615850e-47
Msa0296250	Msa1427560	0.821707	3.498225e-53	-8.615850e-47
Msa0298200	Msa1427560	0.888226	7.125308e-73	-8.615850e-47
Msa0298990	Msa1427560	0.895206	1.194166e-75	-8.615850e-47
Msa0300350	Msa1427560	0.901658	2.144775e-78	-8.615850e-47
Msa0304590	Msa1427560	0.829093	6.242193e-55	-8.615850e-47
Msa0304660	Msa1427560	0.829141	6.077628e-55	-8.615850e-47
Msa0306690	Msa1427560	0.861525	9.649246e-64	-8.615850e-47
Msa0307850	Msa1427560	0.816939	4.269374e-52	-8.615850e-47
Msa0317910	Msa1427560	0.801109	1.051169e-48	-8.615850e-47
Msa0327300	Msa1427560	0.879794	9.317151e-70	-8.615850e-47
Msa0327330	Msa1427560	0.840460	8.583084e-58	-8.615850e-47
Msa0331700	Msa1427560	0.829739	4.349015e-55	-8.615850e-47
Msa0333190	Msa1427560	0.803535	3.328589e-49	-8.615850e-47
Msa0336010	Msa1427560	0.836344	9.889400e-57	-8.615850e-47
Msa0337650	Msa1427560	0.836209	1.070111e-56	-8.615850e-47
Msa0337670	Msa1427560	0.809925	1.486712e-50	-8.615850e-47
Msa0348830	Msa1427560	0.902484	9.248476e-79	-8.615850e-47
Msa1122820	Msa1427560	0.830206	3.345612e-55	-8.615850e-47
Msa1124070	Msa1427560	0.815192	1.048595e-51	-8.615850e-47
Msa1125860	Msa1427560	0.834873	2.330442e-56	-8.615850e-47
Msa1126060	Msa1427560	0.834010	3.837627e-56	-8.615850e-47
Msa1126470	Msa1427560	0.840457	8.595345e-58	-8.615850e-47
Msa1126510	Msa1427560	0.868211	7.726252e-66	-8.615850e-47
Msa1126770	Msa1427560	0.822524	2.262409e-53	-8.615850e-47
Msa1126830	Msa1427560	0.826889	2.117453e-54	-8.615850e-47
Msa1127540	Msa1427560	0.801535	8.601588e-49	-8.615850e-47
Msa1127590	Msa1427560	0.803895	2.802156e-49	-8.615850e-47
Msa1131170	Msa1427560	0.819435	1.162961e-52	-8.615850e-47
Msa1131560	Msa1427560	0.825425	4.719758e-54	-8.615850e-47
Msa1135890	Msa1427560	0.832541	8.911488e-56	-8.615850e-47
Msa1138870	Msa1427560	0.844804	6.025210e-59	-8.615850e-47
Msa1143510	Msa1427560	0.804035	2.620757e-49	-8.615850e-47
Msa1165780	Msa1427560	0.844771	6.151111e-59	-8.615850e-47
Msa1166860	Msa1427560	0.873875	1.047367e-67	-8.615850e-47
Msa1166870	Msa1427560	0.909906	3.390543e-82	-8.615850e-47
Msa1179950	Msa1427560	0.808958	2.398337e-50	-8.615850e-47
Msa1179980	Msa1427560	0.822752	2.001700e-53	-8.615850e-47
Msa1184370	Msa1427560	0.847865	8.820780e-60	-8.615850e-47
Msa1198530	Msa1427560	0.808322	3.279321e-50	-8.615850e-47
Msa1201830	Msa1427560	0.853278	2.656236e-61	-8.615850e-47
Msa1202580	Msa1427560	0.804211	2.408970e-49	-8.615850e-47
Msa1208020	Msa1427560	0.805903	1.065925e-49	-8.615850e-47
Msa1215820	Msa1427560	0.851774	7.131030e-61	-8.615850e-47
Msa1218140	Msa1427560	0.815479	9.050146e-52	-8.615850e-47
Msa1218600	Msa1427560	0.811884	5.600386e-51	-8.615850e-47
Msa0483110	Msa1427560	0.827394	1.602966e-54	-8.615850e-47
Msa0508590	Msa1427560	0.802096	6.595830e-49	-8.615850e-47
Msa0509950	Msa1427560	-0.830779	2.422661e-55	-8.615850e-47
Msa0520660	Msa1427560	0.811671	6.230745e-51	-8.615850e-47
Msa0526540	Msa1427560	0.917586	4.431530e-86	-8.615850e-47
Msa0527150	Msa1427560	0.894046	3.562568e-75	-8.615850e-47
Msa0531650	Msa1427560	0.851764	7.173445e-61	-8.615850e-47
Msa0534750	Msa1427560	0.883940	2.931642e-71	-8.615850e-47
Msa0550570	Msa1427560	0.817793	2.742051e-52	-8.615850e-47
Msa0561430	Msa1427560	0.820325	7.281189e-53	-8.615850e-47
Msa0571920	Msa1427560	0.895533	8.755730e-76	-8.615850e-47
Msa0576940	Msa1427560	0.922328	1.134253e-88	-8.615850e-47
Msa0581070	Msa1427560	0.834574	2.769890e-56	-8.615850e-47
Msa0581110	Msa1427560	0.823786	1.148492e-53	-8.615850e-47
Msa0590940	Msa1427560	0.821408	4.102998e-53	-8.615850e-47
Msa0593700	Msa1427560	0.810420	1.162872e-50	-8.615850e-47
Msa0846240	Msa1427560	0.801552	8.532902e-49	-8.615850e-47
Msa0867060	Msa1427560	0.858402	8.445466e-63	-8.615850e-47
Msa0881290	Msa1427560	0.811515	6.737369e-51	-8.615850e-47
Msa0888810	Msa1427560	0.826782	2.245890e-54	-8.615850e-47
Msa0888940	Msa1427560	0.809287	2.038968e-50	-8.615850e-47
Msa0943170	Msa1427560	0.822987	1.764991e-53	-8.615850e-47
Msa0945480	Msa1427560	0.844455	7.482912e-59	-8.615850e-47
Msa0960830	Msa1427560	0.835735	1.411106e-56	-8.615850e-47
Msa0963020	Msa1427560	0.840418	8.799208e-58	-8.615850e-47
Msa0968440	Msa1427560	0.816229	6.158983e-52	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1427560	MtrunA17_Chr2g0297101	100.000	135	0	0	1	135	1	135	4.49e-95	270
Msa1427560	MtrunA17_Chr2g0277391	99.259	135	1	0	1	135	1	135	1.53e-94	268

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1427560	AT4G15000.1	86.667	135	18	1	135	1	135	7.89e-84	241
Msa1427560	AT3G22230.1	86.667	135	18	1	135	1	135	1.24e-83	241
Msa1427560	AT2G32220.1	80.000	135	27	1	135	1	135	7.77e-78	226
Msa1427560	AT4G15000.2	85.366	123	18	1	123	1	123	4.27e-73	214

Find 34 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CACGATGACGGCTTTCTTCC+CGG	0.266318	tig0026191:-55518	None:intergenic
TACGGGCATTGTCTTGTTGC+AGG	0.269826	tig0026191:+55574	Msa1427560:CDS
TCCCGGCGTAGCGTCCTTGT+AGG	0.400507	tig0026191:-55501	None:intergenic
GGTTTAAGACTGGGAAGAAT+AGG	0.401208	tig0026191:+55821	Msa1427560:CDS
GGAACTCGCGACCGTGCTTA+CGG	0.402067	tig0026191:+55556	Msa1427560:CDS
AGGACGATGACGGCTTTGTT+TGG	0.406607	tig0026191:-55481	None:intergenic
TACTGATGTTCTTCAGAGTA+AGG	0.417538	tig0026191:+55750	Msa1427560:CDS
TAAGAAGGTGACTGCTTTGA+AGG	0.432710	tig0026191:+55774	Msa1427560:CDS
TCCTTCTTGATAACCTTAGC+TGG	0.439811	tig0026191:-55610	None:intergenic
CTTCACACGCGATTTCTTCG+CGG	0.451730	tig0026191:-55647	None:intergenic
GAACTCGCGACCGTGCTTAC+GGG	0.459112	tig0026191:+55557	Msa1427560:CDS
GGTGGTTCTTTACCAAGCTC+AGG	0.462687	tig0026191:+55842	Msa1427560:CDS
GTCGAAATTCTTCACGATGA+CGG	0.503904	tig0026191:-55530	None:intergenic
TTCGAGGAGAGGTTTAAGAC+TGG	0.506310	tig0026191:+55811	Msa1427560:CDS
ACGGGCATTGTCTTGTTGCA+GGG	0.511441	tig0026191:+55575	Msa1427560:CDS
CGCGAAGAAATCGCGTGTGA+AGG	0.529778	tig0026191:+55648	Msa1427560:CDS
AACGAGTCGGCATCAGATGC+TGG	0.530504	tig0026191:-55693	None:intergenic
CGAAGAAGAGGTTCGAGGAG+AGG	0.532977	tig0026191:+55800	Msa1427560:CDS
TCCAGCTAAGGTTATCAAGA+AGG	0.538513	tig0026191:+55609	Msa1427560:CDS
TCGAGGAGAGGTTTAAGACT+GGG	0.540939	tig0026191:+55812	Msa1427560:CDS
AACAGCTCAAAACCTGAGCT+TGG	0.543643	tig0026191:-55854	None:intergenic
AAAGCCGTCATCGTCCTACA+AGG	0.551105	tig0026191:+55487	Msa1427560:CDS
TCTTGATGTTGATTTGAAAG+AGG	0.559046	tig0026191:+55720	Msa1427560:CDS
TCTTCAGAGTAAGGATAAGA+AGG	0.568239	tig0026191:+55759	Msa1427560:CDS
GTCCTACAAGGACGCTACGC+CGG	0.584899	tig0026191:+55499	Msa1427560:CDS
CAAGACAATGCCCGTAAGCA+CGG	0.587108	tig0026191:-55567	None:intergenic
CTTTGAAGGAGGCGAAGAAG+AGG	0.602084	tig0026191:+55788	Msa1427560:CDS
GATCAAGAAGTATCCAGCTA+AGG	0.602579	tig0026191:+55597	Msa1427560:CDS
GGAGGCGAAGAAGAGGTTCG+AGG	0.607573	tig0026191:+55795	Msa1427560:CDS
TTAAGACTGGGAAGAATAGG+TGG	0.614047	tig0026191:+55824	Msa1427560:CDS
GCGTCCTTGTAGGACGATGA+CGG	0.630553	tig0026191:-55491	None:intergenic
GAAGGTGACTGCTTTGAAGG+AGG	0.640915	tig0026191:+55777	Msa1427560:CDS
ACATCAAGAGTGTAACGAGT+CGG	0.653533	tig0026191:-55706	None:intergenic
ATCGTGAAGAATTTCGACGA+CGG	0.729202	tig0026191:+55535	Msa1427560:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TCTTGATGTTGATTTGAAAG+AGG	+	tig0026191:55720-55739	Msa1427560:CDS	30.0%
	TACTGATGTTCTTCAGAGTA+AGG	+	tig0026191:55750-55769	Msa1427560:CDS	35.0%
	TCTTCAGAGTAAGGATAAGA+AGG	+	tig0026191:55759-55778	Msa1427560:CDS	35.0%
	GTCGAAATTCTTCACGATGA+CGG	-	tig0026191:55533-55552	None:intergenic	40.0%
	ATCGTGAAGAATTTCGACGA+CGG	+	tig0026191:55535-55554	Msa1427560:CDS	40.0%
!!	GATCAAGAAGTATCCAGCTA+AGG	+	tig0026191:55597-55616	Msa1427560:CDS	40.0%
	TCCAGCTAAGGTTATCAAGA+AGG	+	tig0026191:55609-55628	Msa1427560:CDS	40.0%
!	TCCTTCTTGATAACCTTAGC+TGG	-	tig0026191:55613-55632	None:intergenic	40.0%
!	ACATCAAGAGTGTAACGAGT+CGG	-	tig0026191:55709-55728	None:intergenic	40.0%
	TAAGAAGGTGACTGCTTTGA+AGG	+	tig0026191:55774-55793	Msa1427560:CDS	40.0%
!	GGTTTAAGACTGGGAAGAAT+AGG	+	tig0026191:55821-55840	Msa1427560:CDS	40.0%
	TTAAGACTGGGAAGAATAGG+TGG	+	tig0026191:55824-55843	Msa1427560:CDS	40.0%
!	TTCGAGGAGAGGTTTAAGAC+TGG	+	tig0026191:55811-55830	Msa1427560:CDS	45.0%
!	TCGAGGAGAGGTTTAAGACT+GGG	+	tig0026191:55812-55831	Msa1427560:CDS	45.0%
!!	AGGACGATGACGGCTTTGTT+TGG	-	tig0026191:55484-55503	None:intergenic	50.0%
	AAAGCCGTCATCGTCCTACA+AGG	+	tig0026191:55487-55506	Msa1427560:CDS	50.0%
	CAAGACAATGCCCGTAAGCA+CGG	-	tig0026191:55570-55589	None:intergenic	50.0%
!	TACGGGCATTGTCTTGTTGC+AGG	+	tig0026191:55574-55593	Msa1427560:CDS	50.0%
!	ACGGGCATTGTCTTGTTGCA+GGG	+	tig0026191:55575-55594	Msa1427560:CDS	50.0%
	CTTCACACGCGATTTCTTCG+CGG	-	tig0026191:55650-55669	None:intergenic	50.0%
!!	GAAGGTGACTGCTTTGAAGG+AGG	+	tig0026191:55777-55796	Msa1427560:CDS	50.0%
!	CTTTGAAGGAGGCGAAGAAG+AGG	+	tig0026191:55788-55807	Msa1427560:CDS	50.0%
	GGTGGTTCTTTACCAAGCTC+AGG	+	tig0026191:55842-55861	Msa1427560:CDS	50.0%
	GCGTCCTTGTAGGACGATGA+CGG	-	tig0026191:55494-55513	None:intergenic	55.0%
!	CACGATGACGGCTTTCTTCC+CGG	-	tig0026191:55521-55540	None:intergenic	55.0%
	CGCGAAGAAATCGCGTGTGA+AGG	+	tig0026191:55648-55667	Msa1427560:CDS	55.0%
	AACGAGTCGGCATCAGATGC+TGG	-	tig0026191:55696-55715	None:intergenic	55.0%
	CGAAGAAGAGGTTCGAGGAG+AGG	+	tig0026191:55800-55819	Msa1427560:CDS	55.0%
	GTCCTACAAGGACGCTACGC+CGG	+	tig0026191:55499-55518	Msa1427560:CDS	60.0%
	TCCTACAAGGACGCTACGCC+GGG	+	tig0026191:55500-55519	Msa1427560:CDS	60.0%
	GGAACTCGCGACCGTGCTTA+CGG	+	tig0026191:55556-55575	Msa1427560:CDS	60.0%
	GAACTCGCGACCGTGCTTAC+GGG	+	tig0026191:55557-55576	Msa1427560:CDS	60.0%
	GGAGGCGAAGAAGAGGTTCG+AGG	+	tig0026191:55795-55814	Msa1427560:CDS	60.0%
	TCCCGGCGTAGCGTCCTTGT+AGG	-	tig0026191:55504-55523	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
tig0026191	gene	55463	55870	55463	ID=Msa1427560;Name=Msa1427560
tig0026191	mRNA	55463	55870	55463	ID=Msa1427560-mRNA-1;Parent=Msa1427560;Name=Msa1427560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|135
tig0026191	exon	55463	55870	55463	ID=Msa1427560-mRNA-1:exon:5485;Parent=Msa1427560-mRNA-1
tig0026191	CDS	55463	55870	55463	ID=Msa1427560-mRNA-1:cds;Parent=Msa1427560-mRNA-1

Gene Sequence

>Msa1427560

ATGGTGAAATTCTTGAAGCCAAACAAAGCCGTCATCGTCCTACAAGGACGCTACGCCGGGAAGAAAGCCGTCATCGTGAAGAATTTCGACGACGGAACTCGCGACCGTGCTTACGGGCATTGTCTTGTTGCAGGGATCAAGAAGTATCCAGCTAAGGTTATCAAGAAGGATTCAGCGAAGAAAACCGCGAAGAAATCGCGTGTGAAGGCTTTCGTGAAGCTTGTTAACTACCAGCATCTGATGCCGACTCGTTACACTCTTGATGTTGATTTGAAAGAGGTTGTTACTACTGATGTTCTTCAGAGTAAGGATAAGAAGGTGACTGCTTTGAAGGAGGCGAAGAAGAGGTTCGAGGAGAGGTTTAAGACTGGGAAGAATAGGTGGTTCTTTACCAAGCTCAGGTTTTGA

Protein sequence

>Msa1427560

MVKFLKPNKAVIVLQGRYAGKKAVIVKNFDDGTRDRAYGHCLVAGIKKYPAKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKEVVTTDVLQSKDKKVTALKEAKKRFEERFKTGKNRWFFTKLRF*