Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298140 | XP_003596822.1 | 96.861 | 223 | 0 | 1 | 1 | 223 | 1 | 216 | 3.70e-152 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298140 | sp|Q8VZB9|R10A1_ARATH | 86.996 | 223 | 22 | 1 | 1 | 223 | 1 | 216 | 1.06e-125 | 357 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298140 | G7ITT4 | 96.861 | 223 | 0 | 1 | 1 | 223 | 1 | 216 | 1.77e-152 | 431 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003780 | Msa0298140 | 0.823331 | 1.467242e-53 | -8.615850e-47 |
| Msa0022970 | Msa0298140 | 0.840444 | 8.661562e-58 | -8.615850e-47 |
| Msa0040690 | Msa0298140 | 0.826614 | 2.462465e-54 | -8.615850e-47 |
| Msa0052790 | Msa0298140 | 0.822490 | 2.304277e-53 | -8.615850e-47 |
| Msa0086750 | Msa0298140 | 0.824123 | 9.571060e-54 | -8.615850e-47 |
| Msa0091880 | Msa0298140 | 0.815357 | 9.638208e-52 | -8.615850e-47 |
| Msa0146340 | Msa0298140 | 0.830932 | 2.222924e-55 | -8.615850e-47 |
| Msa0264010 | Msa0298140 | 0.806735 | 7.120004e-50 | -8.615850e-47 |
| Msa0289580 | Msa0298140 | 0.813199 | 2.889018e-51 | -8.615850e-47 |
| Msa0289610 | Msa0298140 | 0.816336 | 5.828658e-52 | -8.615850e-47 |
| Msa0298140 | Msa0327300 | 0.802829 | 4.658119e-49 | -8.615850e-47 |
| Msa0298140 | Msa0327330 | 0.813131 | 2.990026e-51 | -8.615850e-47 |
| Msa0298140 | Msa0517050 | 0.832059 | 1.173373e-55 | -8.615850e-47 |
| Msa0298140 | Msa0780490 | 0.845685 | 3.480837e-59 | -8.615850e-47 |
| Msa0298140 | Msa0953310 | 0.809995 | 1.436527e-50 | -8.615850e-47 |
| Msa0298140 | Msa1012740 | 0.800915 | 1.151858e-48 | -8.615850e-47 |
| Msa0298140 | Msa1043690 | 0.842247 | 2.905954e-58 | -8.615850e-47 |
| Msa0298140 | Msa1173160 | 0.823134 | 1.630703e-53 | -8.615850e-47 |
| Msa0298140 | Msa1374120 | 0.837534 | 4.912052e-57 | -8.615850e-47 |
| Msa0298140 | Msa1382620 | 0.818440 | 1.957618e-52 | -8.615850e-47 |
| Msa0298140 | Msa1399530 | 0.816386 | 5.679330e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298140 | MtrunA17_Chr2g0321491 | 96.861 | 223 | 0 | 1 | 1 | 223 | 1 | 216 | 3.40e-156 | 431 |
| Msa0298140 | MtrunA17_Chr5g0399471 | 95.964 | 223 | 2 | 1 | 1 | 223 | 1 | 216 | 8.37e-155 | 427 |
| Msa0298140 | MtrunA17_Chr3g0113691 | 95.516 | 223 | 3 | 1 | 1 | 223 | 1 | 216 | 2.74e-154 | 426 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298140 | AT1G08360.1 | 86.996 | 223 | 22 | 1 | 1 | 223 | 1 | 216 | 1.08e-126 | 357 |
| Msa0298140 | AT2G27530.2 | 86.547 | 223 | 23 | 1 | 1 | 223 | 1 | 216 | 5.31e-126 | 355 |
| Msa0298140 | AT2G27530.1 | 86.547 | 223 | 23 | 1 | 1 | 223 | 1 | 216 | 5.31e-126 | 355 |
| Msa0298140 | AT5G22440.1 | 87.054 | 224 | 21 | 2 | 1 | 223 | 1 | 217 | 1.44e-124 | 352 |
| Msa0298140 | AT5G22440.2 | 87.054 | 224 | 21 | 2 | 1 | 223 | 1 | 217 | 1.44e-124 | 352 |
Find 65 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAATTGAGATTACTATTT+TGG | 0.112231 | 2_3:+52071878 | Msa0298140:three_prime_UTR |
| TGACACTCAGTTGTACATTT+TGG | 0.245739 | 2_3:-52071226 | None:intergenic |
| TAAGCAAATTCCTCGGCTTT+TGG | 0.248004 | 2_3:+52070626 | Msa0298140:CDS |
| TATTGTTCAAATGAATTCTT+AGG | 0.257263 | 2_3:+52072038 | Msa0298140:three_prime_UTR |
| TAAGAAACTGGTGAAGAAAT+TGG | 0.278623 | 2_3:+52070563 | Msa0298140:CDS |
| CCTTGGCCTCAAGAGATTCT+TGG | 0.283166 | 2_3:-52071106 | None:intergenic |
| AACAGCTTCCGAAGCTAAAA+AGG | 0.285164 | 2_3:-52070601 | None:intergenic |
| GATTTAAGATTAGGGTGATT+TGG | 0.297937 | 2_3:-52072077 | None:intergenic |
| CATCTTCTTCCTCCACTCTA+AGG | 0.313327 | 2_3:+52069182 | Msa0298140:five_prime_UTR |
| ATCTTGAATCAGAGTCTTGC+AGG | 0.314727 | 2_3:-52069326 | None:intergenic |
| AATCAGAGTCTTGCAGGAAT+TGG | 0.325732 | 2_3:-52069320 | None:intergenic |
| AAATACGAGGATTTAAGATT+AGG | 0.347775 | 2_3:-52072086 | None:intergenic |
| AATACGAGGATTTAAGATTA+GGG | 0.359821 | 2_3:-52072085 | None:intergenic |
| AGAATTCATTTGAACAATAT+AGG | 0.373621 | 2_3:-52072034 | None:intergenic |
| ATCAAACAAAACTGTAGAAA+AGG | 0.382371 | 2_3:-52071930 | None:intergenic |
| AAGCATGCAAATCTTCATCT+TGG | 0.411943 | 2_3:-52069947 | None:intergenic |
| ATACTGTAGGCTGAGAAAAT+AGG | 0.420144 | 2_3:+52070495 | Msa0298140:intron |
| GCTGTGAGAGAAGCTATTAC+AGG | 0.444577 | 2_3:+52069790 | Msa0298140:CDS |
| AGCTGTTGGCAATGTCAGTA+TGG | 0.454854 | 2_3:+52071187 | Msa0298140:CDS |
| TGCACAGCACTTTCTTAAGC+TGG | 0.456962 | 2_3:-52071157 | None:intergenic |
| TAGGGTGATTTGGACTATCA+TGG | 0.457686 | 2_3:-52072067 | None:intergenic |
| GGCCTTAGTCTCATTTACCT+TGG | 0.463053 | 2_3:-52071123 | None:intergenic |
| GAGACTATTGAACTCCAGAT+TGG | 0.463448 | 2_3:+52069853 | Msa0298140:CDS |
| CGTAGTTCTTAAGACCAATC+TGG | 0.467027 | 2_3:-52069867 | None:intergenic |
| AAAACCCTAAACTCTCAAAA+CGG | 0.468805 | 2_3:+52069118 | Msa0298140:five_prime_UTR |
| AAGATGAAGATTTGCATGCT+TGG | 0.474267 | 2_3:+52069949 | Msa0298140:CDS |
| AAACCCTAAACTCTCAAAAC+GGG | 0.475977 | 2_3:+52069119 | Msa0298140:five_prime_UTR |
| TCAAACAAAACTGTAGAAAA+GGG | 0.493977 | 2_3:-52071929 | None:intergenic |
| AGCATGCAAATCTTCATCTT+GGG | 0.497546 | 2_3:-52069946 | None:intergenic |
| TAAGAACTACGACCCACAAA+AGG | 0.507014 | 2_3:+52069879 | Msa0298140:CDS |
| AGAAGCTATTACAGGAATCA+TGG | 0.507152 | 2_3:+52069798 | Msa0298140:CDS |
| CTTGTATCTCAAAAGTTCCA+TGG | 0.508906 | 2_3:+52071809 | Msa0298140:CDS |
| GTAGGCTGAGAAAATAGGAT+TGG | 0.517891 | 2_3:+52070500 | Msa0298140:intron |
| CCAAGAATCTCTTGAGGCCA+AGG | 0.518576 | 2_3:+52071106 | Msa0298140:CDS |
| CTTGGTGGGAAACAAGAGTT+GGG | 0.519768 | 2_3:-52071088 | None:intergenic |
| TCTTGGTGGGAAACAAGAGT+TGG | 0.522569 | 2_3:-52071089 | None:intergenic |
| GAAAATAGGATTGGAATCGA+TGG | 0.526298 | 2_3:+52070509 | Msa0298140:CDS |
| AGGAATCATGGCTGATTCCA+AGG | 0.534020 | 2_3:+52069810 | Msa0298140:CDS |
| GGCCAAGGTAAATGAGACTA+AGG | 0.535346 | 2_3:+52071121 | Msa0298140:CDS |
| TGGCCTCAAGAGATTCTTGG+TGG | 0.549788 | 2_3:-52071103 | None:intergenic |
| CAAATCTTCATCTTGGGTCG+AGG | 0.562426 | 2_3:-52069940 | None:intergenic |
| GGTCCTGGTCTCAACAAGGC+AGG | 0.563119 | 2_3:+52070648 | Msa0298140:CDS |
| CTGTTATTAAGCAAATTCCT+CGG | 0.572203 | 2_3:+52070619 | Msa0298140:CDS |
| TTTGGGTCCTGGTCTCAACA+AGG | 0.572628 | 2_3:+52070644 | Msa0298140:CDS |
| GCTTAAGAAAGTGCTGTGCA+TGG | 0.574345 | 2_3:+52071160 | Msa0298140:CDS |
| CTTAAGAAAGTGCTGTGCAT+GGG | 0.577992 | 2_3:+52071161 | Msa0298140:CDS |
| CAAGACTCTGATTCAAGATG+AGG | 0.579306 | 2_3:+52069330 | Msa0298140:exon |
| ACTGTAATAGCTGAGACAGC+AGG | 0.580887 | 2_3:+52071903 | Msa0298140:three_prime_UTR |
| GGGAGAATACCTTAGAGTGG+AGG | 0.584839 | 2_3:-52069191 | None:intergenic |
| CTTAAGCTGGAACTTGACCA+TGG | 0.589652 | 2_3:-52071144 | None:intergenic |
| TTGTATCTCAAAAGTTCCAT+GGG | 0.590539 | 2_3:+52071810 | Msa0298140:CDS |
| CAAAAGGATAAGCGTTTCAG+TGG | 0.592129 | 2_3:+52069895 | Msa0298140:CDS |
| AGAGGGAGAATACCTTAGAG+TGG | 0.608803 | 2_3:-52069194 | None:intergenic |
| ATCTTGGGTCGAGGAATGTG+AGG | 0.608945 | 2_3:-52069931 | None:intergenic |
| GGCCTCAAGAGATTCTTGGT+GGG | 0.614704 | 2_3:-52071102 | None:intergenic |
| GGTAAATGAGACTAAGGCCA+TGG | 0.617805 | 2_3:+52071127 | Msa0298140:CDS |
| TGGAGATGCTCAGCATGTTG+AGG | 0.621445 | 2_3:+52069969 | Msa0298140:CDS |
| CTGCTCTCATTTCTTTCGTG+CGG | 0.622311 | 2_3:+52069156 | Msa0298140:five_prime_UTR |
| ATGCCTGCCTTGTTGAGACC+AGG | 0.624246 | 2_3:-52070651 | None:intergenic |
| AGATGCTCAGCATGTTGAGG+AGG | 0.663333 | 2_3:+52069972 | Msa0298140:CDS |
| TTCCCACCAAGAATCTCTTG+AGG | 0.663873 | 2_3:+52071100 | Msa0298140:CDS |
| CTGTGCATGGGAGTAGCTGT+TGG | 0.665133 | 2_3:+52071173 | Msa0298140:CDS |
| AGACCAGGACCCAAAAGCCG+AGG | 0.667775 | 2_3:-52070636 | None:intergenic |
| GACACGGTAAGATTTGCCCA+TGG | 0.686850 | 2_3:-52071826 | None:intergenic |
| GGTGATTTGGACTATCATGG+AGG | 0.736028 | 2_3:-52072064 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATTTGAAAATTAATTAGT+TGG | + | chr2_3:52069538-52069557 | Msa0298140:intron | 15.0% |
| !! | GATTTGAAAATTAATTAGTT+GGG | + | chr2_3:52069539-52069558 | Msa0298140:intron | 15.0% |
| !! | ATATTTAGAAAAATCTCTAT+TGG | + | chr2_3:52070232-52070251 | Msa0298140:intron | 15.0% |
| !!! | TATATGTATAGAATGTTTTT+AGG | + | chr2_3:52070789-52070808 | Msa0298140:intron | 15.0% |
| !!! | ATATGTATAGAATGTTTTTA+GGG | + | chr2_3:52070790-52070809 | Msa0298140:intron | 15.0% |
| !! | CTTTAAATAACACAATAAAA+TGG | - | chr2_3:52071507-52071526 | None:intergenic | 15.0% |
| !! | CAAATTAAATAAATATTCCA+AGG | - | chr2_3:52071737-52071756 | None:intergenic | 15.0% |
| !! | CTTGGAATATTTATTTAATT+TGG | + | chr2_3:52071735-52071754 | Msa0298140:intron | 15.0% |
| !! | AGAATGAAGAAGAAAAATTA+GGG | - | chr2_3:52069284-52069303 | None:intergenic | 20.0% |
| !! | AAGAATGAAGAAGAAAAATT+AGG | - | chr2_3:52069285-52069304 | None:intergenic | 20.0% |
| !! | AACAAACTGTATATAACTTT+AGG | - | chr2_3:52069412-52069431 | None:intergenic | 20.0% |
| !!! | TTCTGTTTTAAACCATATTT+CGG | - | chr2_3:52069565-52069584 | None:intergenic | 20.0% |
| !! | TGTTAATTGAAAGTAAACAA+TGG | + | chr2_3:52069712-52069731 | Msa0298140:intron | 20.0% |
| !! | GTTAATTGAAAGTAAACAAT+GGG | + | chr2_3:52069713-52069732 | Msa0298140:intron | 20.0% |
| !! | TTAATTGAAAGTAAACAATG+GGG | + | chr2_3:52069714-52069733 | Msa0298140:intron | 20.0% |
| !!! | CTATTTGATTTGATTTTTGT+TGG | + | chr2_3:52070134-52070153 | Msa0298140:intron | 20.0% |
| !!! | ATTGACTTATTTTCTGAAAT+AGG | + | chr2_3:52070165-52070184 | Msa0298140:intron | 20.0% |
| !!! | TGTCTTTAATTTAGTTTTGA+TGG | + | chr2_3:52070384-52070403 | Msa0298140:intron | 20.0% |
| !!! | TTTTATTCTTTTGGGTTTTT+TGG | + | chr2_3:52070677-52070696 | Msa0298140:intron | 20.0% |
| !! | TTTACTCTAACACAATAAAA+TGG | - | chr2_3:52071401-52071420 | None:intergenic | 20.0% |
| !! | AACTAAAACAGTATTTACTA+CGG | - | chr2_3:52071570-52071589 | None:intergenic | 20.0% |
| !!! | AAAATTGAAACTTGATAACA+AGG | - | chr2_3:52071651-52071670 | None:intergenic | 20.0% |
| !! | TAAAAACCATTTAAAAGACA+CGG | - | chr2_3:52071845-52071864 | None:intergenic | 20.0% |
| !!! | TGAAATTGAGATTACTATTT+TGG | + | chr2_3:52071878-52071897 | Msa0298140:three_prime_UTR | 20.0% |
| !! | AGAATTCATTTGAACAATAT+AGG | - | chr2_3:52072037-52072056 | None:intergenic | 20.0% |
| !! | TATTGTTCAAATGAATTCTT+AGG | + | chr2_3:52072038-52072057 | Msa0298140:three_prime_UTR | 20.0% |
| ! | TACTTGATTGAGAAACTATT+AGG | + | chr2_3:52069513-52069532 | Msa0298140:intron | 25.0% |
| !! | CAATAGTCTCAACAAATTTT+CGG | - | chr2_3:52069843-52069862 | None:intergenic | 25.0% |
| ! | ATTGTAAGAAACCAAAATGA+GGG | - | chr2_3:52070104-52070123 | None:intergenic | 25.0% |
| ! | AATTGTAAGAAACCAAAATG+AGG | - | chr2_3:52070105-52070124 | None:intergenic | 25.0% |
| ! | GCTAAACAAAAATAAGAAAC+TGG | + | chr2_3:52070551-52070570 | Msa0298140:CDS | 25.0% |
| ! | AATTCAAAAGGAACATGTTA+TGG | - | chr2_3:52071010-52071029 | None:intergenic | 25.0% |
| ! | ACGTCAAAACATAAAATAGA+CGG | - | chr2_3:52071331-52071350 | None:intergenic | 25.0% |
| !!! | GCATTTTTTATTGAAGAGTT+TGG | + | chr2_3:52071591-52071610 | Msa0298140:intron | 25.0% |
| ! | TTTCAACAAAAGGTTATTTG+AGG | - | chr2_3:52071617-52071636 | None:intergenic | 25.0% |
| ! | AAAAGTTTACATTAGATGGA+TGG | - | chr2_3:52071770-52071789 | None:intergenic | 25.0% |
| ! | CAACAAAAGTTTACATTAGA+TGG | - | chr2_3:52071774-52071793 | None:intergenic | 25.0% |
| !! | CATCTAATGTAAACTTTTGT+TGG | + | chr2_3:52071772-52071791 | Msa0298140:intron | 25.0% |
| ! | TCAAACAAAACTGTAGAAAA+GGG | - | chr2_3:52071932-52071951 | None:intergenic | 25.0% |
| ! | ATCAAACAAAACTGTAGAAA+AGG | - | chr2_3:52071933-52071952 | None:intergenic | 25.0% |
| !! | AATACGAGGATTTAAGATTA+GGG | - | chr2_3:52072088-52072107 | None:intergenic | 25.0% |
| !! | AAATACGAGGATTTAAGATT+AGG | - | chr2_3:52072089-52072108 | None:intergenic | 25.0% |
| !!! | TGTTTTAAATGTGAAATACG+AGG | - | chr2_3:52072102-52072121 | None:intergenic | 25.0% |
| AAAACCCTAAACTCTCAAAA+CGG | + | chr2_3:52069118-52069137 | Msa0298140:five_prime_UTR | 30.0% | |
| TTTCTTCTTCATTCTTTCAC+AGG | + | chr2_3:52069289-52069308 | Msa0298140:intron | 30.0% | |
| AAGCTACAAAAATGTGAACA+TGG | - | chr2_3:52069378-52069397 | None:intergenic | 30.0% | |
| ! | AAATTTTCGGTTTTTCTCCT+TGG | - | chr2_3:52069830-52069849 | None:intergenic | 30.0% |
| TGTATCCAACAAAAACAGTT+TGG | - | chr2_3:52070017-52070036 | None:intergenic | 30.0% | |
| ATATTATGTCATGTGACAGA+AGG | - | chr2_3:52070216-52070235 | None:intergenic | 30.0% | |
| ! | TAAATCAATTTTGTCAGTCG+TGG | - | chr2_3:52070341-52070360 | None:intergenic | 30.0% |
| !! | GACATCAATTTGTTGATTTG+TGG | - | chr2_3:52070368-52070387 | None:intergenic | 30.0% |
| TAAGAAACTGGTGAAGAAAT+TGG | + | chr2_3:52070563-52070582 | Msa0298140:CDS | 30.0% | |
| CTGTTATTAAGCAAATTCCT+CGG | + | chr2_3:52070619-52070638 | Msa0298140:CDS | 30.0% | |
| !! | AGGCATGTGTTTTATTCTTT+TGG | + | chr2_3:52070668-52070687 | Msa0298140:CDS | 30.0% |
| !! | GGCATGTGTTTTATTCTTTT+GGG | + | chr2_3:52070669-52070688 | Msa0298140:CDS | 30.0% |
| ATATTCACCCATCAAGAAAT+TGG | - | chr2_3:52070858-52070877 | None:intergenic | 30.0% | |
| ! | TTGTTTACTCTTAAGTTGCT+AGG | - | chr2_3:52070892-52070911 | None:intergenic | 30.0% |
| TAACAGTATGTTTGAACACA+AGG | - | chr2_3:52070920-52070939 | None:intergenic | 30.0% | |
| TAACTAAACGAAAAAGAAGC+GGG | - | chr2_3:52070966-52070985 | None:intergenic | 30.0% | |
| CTAACTAAACGAAAAAGAAG+CGG | - | chr2_3:52070967-52070986 | None:intergenic | 30.0% | |
| GGCAATAACTGAAATTCAAA+AGG | - | chr2_3:52071022-52071041 | None:intergenic | 30.0% | |
| TATCCTTGTTGAAAAAGAAC+TGG | + | chr2_3:52071258-52071277 | Msa0298140:CDS | 30.0% | |
| AATGTAAGTATTCCATACCA+TGG | + | chr2_3:52071284-52071303 | Msa0298140:intron | 30.0% | |
| AATGACTTTAATCCATGGTA+TGG | - | chr2_3:52071299-52071318 | None:intergenic | 30.0% | |
| AAAGCAATGACTTTAATCCA+TGG | - | chr2_3:52071304-52071323 | None:intergenic | 30.0% | |
| TTTGGATGATGAGCAATAAT+AGG | + | chr2_3:52071365-52071384 | Msa0298140:intron | 30.0% | |
| TTGGATGATGAGCAATAATA+GGG | + | chr2_3:52071366-52071385 | Msa0298140:intron | 30.0% | |
| ! | AGTCTTTGACTTTAGATTAC+AGG | + | chr2_3:52071531-52071550 | Msa0298140:intron | 30.0% |
| ! | ACTGCTACATTTTCAACAAA+AGG | - | chr2_3:52071627-52071646 | None:intergenic | 30.0% |
| !!! | TGTAAACTTTTGTTGGTTTC+AGG | + | chr2_3:52071779-52071798 | Msa0298140:intron | 30.0% |
| TTGTATCTCAAAAGTTCCAT+GGG | + | chr2_3:52071810-52071829 | Msa0298140:CDS | 30.0% | |
| ! | ATCTTACCGTGTCTTTTAAA+TGG | + | chr2_3:52071836-52071855 | Msa0298140:exon | 30.0% |
| !! | GTTTGATGAGATTTTGTTGT+CGG | + | chr2_3:52071946-52071965 | Msa0298140:three_prime_UTR | 30.0% |
| ! | GATTTAAGATTAGGGTGATT+TGG | - | chr2_3:52072080-52072099 | None:intergenic | 30.0% |
| AAACCCTAAACTCTCAAAAC+GGG | + | chr2_3:52069119-52069138 | Msa0298140:five_prime_UTR | 35.0% | |
| !!! | TAACCCGTTTTGAGAGTTTA+GGG | - | chr2_3:52069125-52069144 | None:intergenic | 35.0% |
| !!! | TTAACCCGTTTTGAGAGTTT+AGG | - | chr2_3:52069126-52069145 | None:intergenic | 35.0% |
| ACGAAGAAGAAGCCTAATTA+GGG | - | chr2_3:52069241-52069260 | None:intergenic | 35.0% | |
| AACGAAGAAGAAGCCTAATT+AGG | - | chr2_3:52069242-52069261 | None:intergenic | 35.0% | |
| TAATTAGTTGGGCCGAAATA+TGG | + | chr2_3:52069550-52069569 | Msa0298140:intron | 35.0% | |
| ATGTAACCGAATCCATTTAG+TGG | + | chr2_3:52069606-52069625 | Msa0298140:intron | 35.0% | |
| !! | CTTTTGCCACTAAATGGATT+CGG | - | chr2_3:52069615-52069634 | None:intergenic | 35.0% |
| AGAAGCTATTACAGGAATCA+TGG | + | chr2_3:52069798-52069817 | Msa0298140:CDS | 35.0% | |
| ! | TGAAACGCTTATCCTTTTGT+GGG | - | chr2_3:52069894-52069913 | None:intergenic | 35.0% |
| AGCATGCAAATCTTCATCTT+GGG | - | chr2_3:52069949-52069968 | None:intergenic | 35.0% | |
| AAGCATGCAAATCTTCATCT+TGG | - | chr2_3:52069950-52069969 | None:intergenic | 35.0% | |
| AAGATGAAGATTTGCATGCT+TGG | + | chr2_3:52069949-52069968 | Msa0298140:CDS | 35.0% | |
| !!! | TGTAGCCAAACTGTTTTTGT+TGG | + | chr2_3:52070009-52070028 | Msa0298140:intron | 35.0% |
| ! | GTGCATTATTACCCTCATTT+TGG | + | chr2_3:52070090-52070109 | Msa0298140:intron | 35.0% |
| ! | ACTAAAGCACTATTGCTTAG+CGG | + | chr2_3:52070278-52070297 | Msa0298140:intron | 35.0% |
| CACTCTAATATGCATACTGT+AGG | + | chr2_3:52070482-52070501 | Msa0298140:intron | 35.0% | |
| ATACTGTAGGCTGAGAAAAT+AGG | + | chr2_3:52070495-52070514 | Msa0298140:intron | 35.0% | |
| GAAAATAGGATTGGAATCGA+TGG | + | chr2_3:52070509-52070528 | Msa0298140:CDS | 35.0% | |
| !!! | TATAGAATGTTTTTAGGGCC+TGG | + | chr2_3:52070795-52070814 | Msa0298140:intron | 35.0% |
| ATGTAAACTTGAATACAGCC+AGG | - | chr2_3:52070816-52070835 | None:intergenic | 35.0% | |
| AACTAAACGAAAAAGAAGCG+GGG | - | chr2_3:52070965-52070984 | None:intergenic | 35.0% | |
| TCAAAAGGAACATGTTATGG+CGG | - | chr2_3:52071007-52071026 | None:intergenic | 35.0% | |
| ! | TGACACTCAGTTGTACATTT+TGG | - | chr2_3:52071229-52071248 | None:intergenic | 35.0% |
| !!! | TCTTTTTCAACAAGGATACG+AGG | - | chr2_3:52071256-52071275 | None:intergenic | 35.0% |
| !!! | TTGCCAGTTCTTTTTCAACA+AGG | - | chr2_3:52071264-52071283 | None:intergenic | 35.0% |
| CACGTCAAACTGTAAATAGA+CGG | - | chr2_3:52071438-52071457 | None:intergenic | 35.0% | |
| TCTATTTACAGTTTGACGTG+TGG | + | chr2_3:52071438-52071457 | Msa0298140:intron | 35.0% | |
| TTTGGAGGAAGAACAATAAC+AGG | + | chr2_3:52071471-52071490 | Msa0298140:intron | 35.0% | |
| TTGGAGGAAGAACAATAACA+GGG | + | chr2_3:52071472-52071491 | Msa0298140:intron | 35.0% | |
| GACTTTAGATTACAGGCAAT+AGG | + | chr2_3:52071538-52071557 | Msa0298140:intron | 35.0% | |
| !!! | ACTTTTGTTGGTTTCAGGTT+AGG | + | chr2_3:52071784-52071803 | Msa0298140:intron | 35.0% |
| CTTGTATCTCAAAAGTTCCA+TGG | + | chr2_3:52071809-52071828 | Msa0298140:CDS | 35.0% | |
| AGAAGCCTAATTAGGGTTTC+TGG | - | chr2_3:52069234-52069253 | None:intergenic | 40.0% | |
| AATCAGAGTCTTGCAGGAAT+TGG | - | chr2_3:52069323-52069342 | None:intergenic | 40.0% | |
| ATCTTGAATCAGAGTCTTGC+AGG | - | chr2_3:52069329-52069348 | None:intergenic | 40.0% | |
| CAAGACTCTGATTCAAGATG+AGG | + | chr2_3:52069330-52069349 | Msa0298140:exon | 40.0% | |
| TCCATTTAGTGGCAAAAGCT+TGG | + | chr2_3:52069617-52069636 | Msa0298140:intron | 40.0% | |
| ! | ACCAAGCTTTTGCCACTAAA+TGG | - | chr2_3:52069621-52069640 | None:intergenic | 40.0% |
| GAGACTATTGAACTCCAGAT+TGG | + | chr2_3:52069853-52069872 | Msa0298140:CDS | 40.0% | |
| CGTAGTTCTTAAGACCAATC+TGG | - | chr2_3:52069870-52069889 | None:intergenic | 40.0% | |
| TAAGAACTACGACCCACAAA+AGG | + | chr2_3:52069879-52069898 | Msa0298140:CDS | 40.0% | |
| ! | CTGAAACGCTTATCCTTTTG+TGG | - | chr2_3:52069895-52069914 | None:intergenic | 40.0% |
| CAAAAGGATAAGCGTTTCAG+TGG | + | chr2_3:52069895-52069914 | Msa0298140:CDS | 40.0% | |
| GGATACACGTGTAGTTGAAA+TGG | + | chr2_3:52070030-52070049 | Msa0298140:intron | 40.0% | |
| GTAGGCTGAGAAAATAGGAT+TGG | + | chr2_3:52070500-52070519 | Msa0298140:intron | 40.0% | |
| !!! | GTACCATGCCTTTTTAGCTT+CGG | + | chr2_3:52070593-52070612 | Msa0298140:CDS | 40.0% |
| AACAGCTTCCGAAGCTAAAA+AGG | - | chr2_3:52070604-52070623 | None:intergenic | 40.0% | |
| ! | TAAGCAAATTCCTCGGCTTT+TGG | + | chr2_3:52070626-52070645 | Msa0298140:CDS | 40.0% |
| ! | AAGCAAATTCCTCGGCTTTT+GGG | + | chr2_3:52070627-52070646 | Msa0298140:CDS | 40.0% |
| GAAAGATGCACAAAACACGT+GGG | - | chr2_3:52070762-52070781 | None:intergenic | 40.0% | |
| AGAAAGATGCACAAAACACG+TGG | - | chr2_3:52070763-52070782 | None:intergenic | 40.0% | |
| TCAAGAAATTGGTGAGGTGT+GGG | - | chr2_3:52070847-52070866 | None:intergenic | 40.0% | |
| ATCAAGAAATTGGTGAGGTG+TGG | - | chr2_3:52070848-52070867 | None:intergenic | 40.0% | |
| ACACCTCACCAATTTCTTGA+TGG | + | chr2_3:52070847-52070866 | Msa0298140:intron | 40.0% | |
| CACCTCACCAATTTCTTGAT+GGG | + | chr2_3:52070848-52070867 | Msa0298140:intron | 40.0% | |
| TTTCAGTTATTGCCTTGCGT+TGG | + | chr2_3:52071028-52071047 | Msa0298140:intron | 40.0% | |
| !!! | GATATTTTTTGTCCCTCTGC+AGG | + | chr2_3:52071059-52071078 | Msa0298140:intron | 40.0% |
| !! | CTTAAGAAAGTGCTGTGCAT+GGG | + | chr2_3:52071161-52071180 | Msa0298140:CDS | 40.0% |
| !! | GTTTTGACGTGATGCATCAT+TGG | + | chr2_3:52071341-52071360 | Msa0298140:intron | 40.0% |
| ACGTGATGCATCATTGGATT+TGG | + | chr2_3:52071347-52071366 | Msa0298140:intron | 40.0% | |
| GTTTACATTAGATGGATGGC+AGG | - | chr2_3:52071766-52071785 | None:intergenic | 40.0% | |
| ! | TAGGGTGATTTGGACTATCA+TGG | - | chr2_3:52072070-52072089 | None:intergenic | 40.0% |
| CTGCTCTCATTTCTTTCGTG+CGG | + | chr2_3:52069156-52069175 | Msa0298140:five_prime_UTR | 45.0% | |
| CATCTTCTTCCTCCACTCTA+AGG | + | chr2_3:52069182-52069201 | Msa0298140:five_prime_UTR | 45.0% | |
| AGAGGGAGAATACCTTAGAG+TGG | - | chr2_3:52069197-52069216 | None:intergenic | 45.0% | |
| TGGCAGAGAATGAGAGAAGA+GGG | - | chr2_3:52069214-52069233 | None:intergenic | 45.0% | |
| CTCTGCCAGAAACCCTAATT+AGG | + | chr2_3:52069226-52069245 | Msa0298140:intron | 45.0% | |
| GCTGTGAGAGAAGCTATTAC+AGG | + | chr2_3:52069790-52069809 | Msa0298140:CDS | 45.0% | |
| ! | AGGAATCATGGCTGATTCCA+AGG | + | chr2_3:52069810-52069829 | Msa0298140:CDS | 45.0% |
| CAAATCTTCATCTTGGGTCG+AGG | - | chr2_3:52069943-52069962 | None:intergenic | 45.0% | |
| AATCTCTATTGGTCCGCGAT+AGG | + | chr2_3:52070243-52070262 | Msa0298140:intron | 45.0% | |
| TGCCACTAAATAGCCTATCG+CGG | - | chr2_3:52070259-52070278 | None:intergenic | 45.0% | |
| CTTCCGAAGCTAAAAAGGCA+TGG | - | chr2_3:52070599-52070618 | None:intergenic | 45.0% | |
| CACCCATCAAGAAATTGGTG+AGG | - | chr2_3:52070853-52070872 | None:intergenic | 45.0% | |
| AAACGAAAAAGAAGCGGGGT+TGG | - | chr2_3:52070961-52070980 | None:intergenic | 45.0% | |
| TATCCAAATCAGCCAACGCA+AGG | - | chr2_3:52071043-52071062 | None:intergenic | 45.0% | |
| CTTGGTGGGAAACAAGAGTT+GGG | - | chr2_3:52071091-52071110 | None:intergenic | 45.0% | |
| TCTTGGTGGGAAACAAGAGT+TGG | - | chr2_3:52071092-52071111 | None:intergenic | 45.0% | |
| TTCCCACCAAGAATCTCTTG+AGG | + | chr2_3:52071100-52071119 | Msa0298140:CDS | 45.0% | |
| GGCCAAGGTAAATGAGACTA+AGG | + | chr2_3:52071121-52071140 | Msa0298140:CDS | 45.0% | |
| GGCCTTAGTCTCATTTACCT+TGG | - | chr2_3:52071126-52071145 | None:intergenic | 45.0% | |
| GGTAAATGAGACTAAGGCCA+TGG | + | chr2_3:52071127-52071146 | Msa0298140:CDS | 45.0% | |
| CTTAAGCTGGAACTTGACCA+TGG | - | chr2_3:52071147-52071166 | None:intergenic | 45.0% | |
| TGCACAGCACTTTCTTAAGC+TGG | - | chr2_3:52071160-52071179 | None:intergenic | 45.0% | |
| !! | GCTTAAGAAAGTGCTGTGCA+TGG | + | chr2_3:52071160-52071179 | Msa0298140:CDS | 45.0% |
| AGCTGTTGGCAATGTCAGTA+TGG | + | chr2_3:52071187-52071206 | Msa0298140:CDS | 45.0% | |
| AGTTTGACGTGTGGCATCAT+TGG | + | chr2_3:52071447-52071466 | Msa0298140:intron | 45.0% | |
| ACGTGTGGCATCATTGGATT+TGG | + | chr2_3:52071453-52071472 | Msa0298140:intron | 45.0% | |
| TGTGGCATCATTGGATTTGG+AGG | + | chr2_3:52071456-52071475 | Msa0298140:intron | 45.0% | |
| ACTGTAATAGCTGAGACAGC+AGG | + | chr2_3:52071903-52071922 | Msa0298140:three_prime_UTR | 45.0% | |
| ! | GGTGATTTGGACTATCATGG+AGG | - | chr2_3:52072067-52072086 | None:intergenic | 45.0% |
| GGGAGAATACCTTAGAGTGG+AGG | - | chr2_3:52069194-52069213 | None:intergenic | 50.0% | |
| CTGGCAGAGAATGAGAGAAG+AGG | - | chr2_3:52069215-52069234 | None:intergenic | 50.0% | |
| ATCTTGGGTCGAGGAATGTG+AGG | - | chr2_3:52069934-52069953 | None:intergenic | 50.0% | |
| TGGAGATGCTCAGCATGTTG+AGG | + | chr2_3:52069969-52069988 | Msa0298140:CDS | 50.0% | |
| AGATGCTCAGCATGTTGAGG+AGG | + | chr2_3:52069972-52069991 | Msa0298140:CDS | 50.0% | |
| GTCCGCGATAGGCTATTTAG+TGG | + | chr2_3:52070254-52070273 | Msa0298140:intron | 50.0% | |
| ! | TTTTGTCAGTCGTGGACTCG+TGG | - | chr2_3:52070333-52070352 | None:intergenic | 50.0% |
| TTTGGGTCCTGGTCTCAACA+AGG | + | chr2_3:52070644-52070663 | Msa0298140:CDS | 50.0% | |
| !! | TTGCCTTGCGTTGGCTGATT+TGG | + | chr2_3:52071037-52071056 | Msa0298140:intron | 50.0% |
| GTTGGGAACTTTCCTGCAGA+GGG | - | chr2_3:52071074-52071093 | None:intergenic | 50.0% | |
| AGTTGGGAACTTTCCTGCAG+AGG | - | chr2_3:52071075-52071094 | None:intergenic | 50.0% | |
| GGCCTCAAGAGATTCTTGGT+GGG | - | chr2_3:52071105-52071124 | None:intergenic | 50.0% | |
| TGGCCTCAAGAGATTCTTGG+TGG | - | chr2_3:52071106-52071125 | None:intergenic | 50.0% | |
| CCTTGGCCTCAAGAGATTCT+TGG | - | chr2_3:52071109-52071128 | None:intergenic | 50.0% | |
| CCAAGAATCTCTTGAGGCCA+AGG | + | chr2_3:52071106-52071125 | Msa0298140:CDS | 50.0% | |
| TGCTCTTCTGTTCTCTGCCT+TGG | + | chr2_3:52071717-52071736 | Msa0298140:intron | 50.0% | |
| GACACGGTAAGATTTGCCCA+TGG | - | chr2_3:52071829-52071848 | None:intergenic | 50.0% | |
| !! | ATTCCTCGGCTTTTGGGTCC+TGG | + | chr2_3:52070633-52070652 | Msa0298140:CDS | 55.0% |
| ! | ATGCCTGCCTTGTTGAGACC+AGG | - | chr2_3:52070654-52070673 | None:intergenic | 55.0% |
| CGAAAAAGAAGCGGGGTTGG+CGG | - | chr2_3:52070958-52070977 | None:intergenic | 55.0% | |
| CTGTGCATGGGAGTAGCTGT+TGG | + | chr2_3:52071173-52071192 | Msa0298140:CDS | 55.0% | |
| AGACCAGGACCCAAAAGCCG+AGG | - | chr2_3:52070639-52070658 | None:intergenic | 60.0% | |
| GGTCCTGGTCTCAACAAGGC+AGG | + | chr2_3:52070648-52070667 | Msa0298140:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 52069109 | 52072131 | 52069109 | ID=Msa0298140;Name=Msa0298140 |
| chr2_3 | mRNA | 52069109 | 52072131 | 52069109 | ID=Msa0298140-mRNA-1;Parent=Msa0298140;Name=Msa0298140-mRNA-1;_AED=0.06;_eAED=0.06;_QI=131|0.8|0.83|1|0.6|0.5|6|277|223 |
| chr2_3 | exon | 52069109 | 52069203 | 52069109 | ID=Msa0298140-mRNA-1:exon:16567;Parent=Msa0298140-mRNA-1 |
| chr2_3 | exon | 52069311 | 52069351 | 52069311 | ID=Msa0298140-mRNA-1:exon:16568;Parent=Msa0298140-mRNA-1 |
| chr2_3 | exon | 52069774 | 52069993 | 52069774 | ID=Msa0298140-mRNA-1:exon:16569;Parent=Msa0298140-mRNA-1 |
| chr2_3 | exon | 52070504 | 52070690 | 52070504 | ID=Msa0298140-mRNA-1:exon:16570;Parent=Msa0298140-mRNA-1 |
| chr2_3 | exon | 52071081 | 52071286 | 52071081 | ID=Msa0298140-mRNA-1:exon:16571;Parent=Msa0298140-mRNA-1 |
| chr2_3 | exon | 52071801 | 52072131 | 52071801 | ID=Msa0298140-mRNA-1:exon:16572;Parent=Msa0298140-mRNA-1 |
| chr2_3 | five_prime_UTR | 52069109 | 52069203 | 52069109 | ID=Msa0298140-mRNA-1:five_prime_utr;Parent=Msa0298140-mRNA-1 |
| chr2_3 | five_prime_UTR | 52069311 | 52069346 | 52069311 | ID=Msa0298140-mRNA-1:five_prime_utr;Parent=Msa0298140-mRNA-1 |
| chr2_3 | CDS | 52069347 | 52069351 | 52069347 | ID=Msa0298140-mRNA-1:cds;Parent=Msa0298140-mRNA-1 |
| chr2_3 | CDS | 52069774 | 52069993 | 52069774 | ID=Msa0298140-mRNA-1:cds;Parent=Msa0298140-mRNA-1 |
| chr2_3 | CDS | 52070504 | 52070690 | 52070504 | ID=Msa0298140-mRNA-1:cds;Parent=Msa0298140-mRNA-1 |
| chr2_3 | CDS | 52071081 | 52071286 | 52071081 | ID=Msa0298140-mRNA-1:cds;Parent=Msa0298140-mRNA-1 |
| chr2_3 | CDS | 52071801 | 52071854 | 52071801 | ID=Msa0298140-mRNA-1:cds;Parent=Msa0298140-mRNA-1 |
| chr2_3 | three_prime_UTR | 52071855 | 52072131 | 52071855 | ID=Msa0298140-mRNA-1:three_prime_utr;Parent=Msa0298140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
