Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273340 | XP_013444087.1 | 100.000 | 215 | 0 | 0 | 1 | 215 | 1 | 215 | 4.79e-155 | 438 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273340 | sp|Q08069|RS8_MAIZE | 85.845 | 219 | 26 | 1 | 1 | 214 | 1 | 219 | 2.01e-136 | 384 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273340 | I3T3T7 | 100.000 | 215 | 0 | 0 | 1 | 215 | 1 | 215 | 2.29e-155 | 438 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa1273340 | 0.829865 | 4.052473e-55 | -8.615850e-47 |
| Msa0002790 | Msa1273340 | 0.816951 | 4.244427e-52 | -8.615850e-47 |
| Msa0032780 | Msa1273340 | 0.819233 | 1.293509e-52 | -8.615850e-47 |
| Msa0048180 | Msa1273340 | 0.814224 | 1.718034e-51 | -8.615850e-47 |
| Msa0052790 | Msa1273340 | 0.816479 | 5.412971e-52 | -8.615850e-47 |
| Msa0086750 | Msa1273340 | 0.826891 | 2.114520e-54 | -8.615850e-47 |
| Msa0097580 | Msa1273340 | 0.802874 | 4.561483e-49 | -8.615850e-47 |
| Msa0116670 | Msa1273340 | 0.817608 | 3.019239e-52 | -8.615850e-47 |
| Msa0666230 | Msa1273340 | 0.814910 | 1.210940e-51 | -8.615850e-47 |
| Msa0698780 | Msa1273340 | 0.820826 | 5.586825e-53 | -8.615850e-47 |
| Msa0712610 | Msa1273340 | 0.807654 | 4.547165e-50 | -8.615850e-47 |
| Msa0781080 | Msa1273340 | 0.813144 | 2.969172e-51 | -8.615850e-47 |
| Msa0785130 | Msa1273340 | 0.813579 | 2.383251e-51 | -8.615850e-47 |
| Msa0792420 | Msa1273340 | 0.803560 | 3.288795e-49 | -8.615850e-47 |
| Msa0827380 | Msa1273340 | 0.809859 | 1.536710e-50 | -8.615850e-47 |
| Msa0133540 | Msa1273340 | 0.824165 | 9.358367e-54 | -8.615850e-47 |
| Msa0172900 | Msa1273340 | 0.803629 | 3.181766e-49 | -8.615850e-47 |
| Msa0173530 | Msa1273340 | 0.817991 | 2.474436e-52 | -8.615850e-47 |
| Msa0181490 | Msa1273340 | 0.824715 | 6.945623e-54 | -8.615850e-47 |
| Msa0189700 | Msa1273340 | 0.807638 | 4.583718e-50 | -8.615850e-47 |
| Msa0218830 | Msa1273340 | 0.833497 | 5.154466e-56 | -8.615850e-47 |
| Msa0219120 | Msa1273340 | 0.826507 | 2.611558e-54 | -8.615850e-47 |
| Msa0230490 | Msa1273340 | 0.836823 | 7.463400e-57 | -8.615850e-47 |
| Msa0232010 | Msa1273340 | 0.807369 | 5.228885e-50 | -8.615850e-47 |
| Msa0232080 | Msa1273340 | 0.806042 | 9.965799e-50 | -8.615850e-47 |
| Msa1230580 | Msa1273340 | 0.878926 | 1.890151e-69 | -8.615850e-47 |
| Msa1256840 | Msa1273340 | 0.812933 | 3.303943e-51 | -8.615850e-47 |
| Msa1266060 | Msa1273340 | 0.812746 | 3.629590e-51 | -8.615850e-47 |
| Msa1273340 | Msa1299590 | 0.860089 | 2.632715e-63 | -8.615850e-47 |
| Msa1273340 | Msa1311400 | 0.801209 | 1.003243e-48 | -8.615850e-47 |
| Msa1273340 | Msa1332250 | 0.837167 | 6.096886e-57 | -8.615850e-47 |
| Msa1273340 | Msa1338190 | 0.830618 | 2.653272e-55 | -8.615850e-47 |
| Msa1273340 | Msa1340980 | 0.803443 | 3.477919e-49 | -8.615850e-47 |
| Msa1273340 | Msa1343260 | 0.813050 | 3.114266e-51 | -8.615850e-47 |
| Msa1273340 | Msa1349570 | 0.803258 | 3.798993e-49 | -8.615850e-47 |
| Msa1273340 | Msa1356790 | 0.809115 | 2.218816e-50 | -8.615850e-47 |
| Msa1273340 | Msa1362790 | 0.840946 | 6.401361e-58 | -8.615850e-47 |
| Msa1273340 | Msa1369190 | 0.815894 | 7.316909e-52 | -8.615850e-47 |
| Msa1273340 | Msa1407070 | 0.818347 | 2.055142e-52 | -8.615850e-47 |
| Msa1273340 | Msa1410440 | 0.807647 | 4.564000e-50 | -8.615850e-47 |
| Msa1273340 | Msa1418770 | 0.821210 | 4.557371e-53 | -8.615850e-47 |
| Msa1273340 | Msa1426120 | 0.831365 | 1.739738e-55 | -8.615850e-47 |
| Msa1273340 | Msa1426490 | 0.807277 | 5.468870e-50 | -8.615850e-47 |
| Msa1273340 | Msa1456050 | 0.819400 | 1.184690e-52 | -8.615850e-47 |
| Msa0443390 | Msa1273340 | 0.800180 | 1.626773e-48 | -8.615850e-47 |
| Msa0481850 | Msa1273340 | 0.844686 | 6.481755e-59 | -8.615850e-47 |
| Msa1010310 | Msa1273340 | 0.800520 | 1.387040e-48 | -8.615850e-47 |
| Msa1019260 | Msa1273340 | 0.803015 | 4.265362e-49 | -8.615850e-47 |
| Msa1039520 | Msa1273340 | 0.826424 | 2.733446e-54 | -8.615850e-47 |
| Msa1072710 | Msa1273340 | 0.804319 | 2.286609e-49 | -8.615850e-47 |
| Msa1078870 | Msa1273340 | 0.828085 | 1.093397e-54 | -8.615850e-47 |
| Msa1078980 | Msa1273340 | 0.820041 | 8.456291e-53 | -8.615850e-47 |
| Msa1080350 | Msa1273340 | 0.867549 | 1.260789e-65 | -8.615850e-47 |
| Msa0258850 | Msa1273340 | 0.840347 | 9.182283e-58 | -8.615850e-47 |
| Msa0264010 | Msa1273340 | 0.801319 | 9.521858e-49 | -8.615850e-47 |
| Msa0289580 | Msa1273340 | 0.800443 | 1.437948e-48 | -8.615850e-47 |
| Msa0297830 | Msa1273340 | 0.803540 | 3.320593e-49 | -8.615850e-47 |
| Msa0298200 | Msa1273340 | 0.833171 | 6.215673e-56 | -8.615850e-47 |
| Msa0306690 | Msa1273340 | 0.813512 | 2.465198e-51 | -8.615850e-47 |
| Msa0317910 | Msa1273340 | 0.819190 | 1.322533e-52 | -8.615850e-47 |
| Msa0335840 | Msa1273340 | 0.804274 | 2.336872e-49 | -8.615850e-47 |
| Msa0336010 | Msa1273340 | 0.870338 | 1.574102e-66 | -8.615850e-47 |
| Msa0337670 | Msa1273340 | 0.821244 | 4.475836e-53 | -8.615850e-47 |
| Msa0348830 | Msa1273340 | 0.860854 | 1.544927e-63 | -8.615850e-47 |
| Msa1125860 | Msa1273340 | 0.870357 | 1.551814e-66 | -8.615850e-47 |
| Msa1126060 | Msa1273340 | 0.862804 | 3.910530e-64 | -8.615850e-47 |
| Msa1143510 | Msa1273340 | 0.938662 | 4.647162e-99 | -8.615850e-47 |
| Msa1169180 | Msa1273340 | 0.811865 | 5.653687e-51 | -8.615850e-47 |
| Msa1173160 | Msa1273340 | 0.814922 | 1.203951e-51 | -8.615850e-47 |
| Msa1215820 | Msa1273340 | 0.828482 | 8.771013e-55 | -8.615850e-47 |
| Msa0483110 | Msa1273340 | 0.837607 | 4.704684e-57 | -8.615850e-47 |
| Msa0521050 | Msa1273340 | 0.800439 | 1.440329e-48 | -8.615850e-47 |
| Msa0527150 | Msa1273340 | 0.885561 | 7.309699e-72 | -8.615850e-47 |
| Msa0867060 | Msa1273340 | 0.817078 | 3.974154e-52 | -8.615850e-47 |
| Msa0881290 | Msa1273340 | 0.806648 | 7.427335e-50 | -8.615850e-47 |
| Msa0953310 | Msa1273340 | 0.817221 | 3.689484e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273340 | MtrunA17_Chr8g0339111 | 100.000 | 215 | 0 | 0 | 1 | 215 | 1 | 215 | 4.40e-159 | 438 |
| Msa1273340 | MtrunA17_Chr7g0234781 | 91.705 | 217 | 16 | 1 | 1 | 215 | 1 | 217 | 9.26e-127 | 356 |
| Msa1273340 | MtrunA17_Chr4g0006811 | 86.528 | 193 | 23 | 2 | 26 | 215 | 5 | 197 | 6.47e-117 | 331 |
| Msa1273340 | MtrunA17_Chr8g0339121 | 86.387 | 191 | 24 | 1 | 26 | 214 | 5 | 195 | 1.23e-110 | 316 |
| Msa1273340 | MtrunA17_Chr4g0006791 | 73.494 | 83 | 21 | 1 | 134 | 215 | 12 | 94 | 4.64e-36 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273340 | AT5G59240.1 | 85.714 | 203 | 22 | 1 | 1 | 203 | 1 | 196 | 1.69e-126 | 356 |
| Msa1273340 | AT5G20290.1 | 80.476 | 210 | 34 | 1 | 1 | 203 | 1 | 210 | 1.04e-108 | 311 |
Find 60 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAAGCTGGCGTTCTTTC+TGG | 0.095224 | 8_3:+7073517 | None:intergenic |
| CACCCTTGCCCTTCTTCTTC+TGG | 0.129125 | 8_3:+7073274 | None:intergenic |
| AATAACCAAGAACAGTTTAA+AGG | 0.276098 | 8_3:+7073100 | None:intergenic |
| CAACACTATGGTGTTGATAT+TGG | 0.287835 | 8_3:-7074647 | Msa1273340:CDS |
| TGCAGTATTCAGAAATTAAT+CGG | 0.325013 | 8_3:+7073034 | None:intergenic |
| TGTGAAGAGTGCTATTGTTC+AGG | 0.325462 | 8_3:-7074702 | Msa1273340:CDS |
| TTCATCCAGTTTCTTCAAGA+TGG | 0.386922 | 8_3:-7076011 | Msa1273340:exon |
| AGTTCGCACCAACTCATTGT+TGG | 0.421739 | 8_3:+7074733 | None:intergenic |
| TCATAGTACTGACTACTATC+AGG | 0.430449 | 8_3:-7073001 | Msa1273340:three_prime_UTR |
| ACTTCCCCATGAGAAGTTAC+CGG | 0.438688 | 8_3:+7074805 | None:intergenic |
| GCACAAAACATCTCTTTGTT+CGG | 0.438936 | 8_3:+7073189 | None:intergenic |
| TGTACCCATCTTGAAGAAAC+TGG | 0.443233 | 8_3:+7076006 | None:intergenic |
| GTGAGGAGGATTCGTGTTAG+AGG | 0.449573 | 8_3:-7074863 | Msa1273340:CDS |
| CAATGGTACCTTCAACACTA+TGG | 0.459815 | 8_3:-7074659 | Msa1273340:CDS |
| GGTCAATGCGGCAGAGCTGA+TGG | 0.461383 | 8_3:-7073435 | Msa1273340:CDS |
| ATATGCAGCTACATTCTTGA+AGG | 0.462284 | 8_3:-7073327 | Msa1273340:intron |
| ATGCACAAGAGACGTGAAAC+TGG | 0.464049 | 8_3:-7075854 | Msa1273340:CDS |
| TCATCCAGTTTCTTCAAGAT+GGG | 0.486532 | 8_3:-7076010 | Msa1273340:intron |
| TTGAAGGTACCATTGCTTGA+AGG | 0.488302 | 8_3:+7074667 | None:intergenic |
| GCATGCATTTCTTCTCGACC+TGG | 0.488891 | 8_3:-7073456 | Msa1273340:CDS |
| CAGCTACATTCTTGAAGGTA+AGG | 0.488998 | 8_3:-7073322 | Msa1273340:CDS |
| TATCAACACCATAGTGTTGA+AGG | 0.489500 | 8_3:+7074651 | None:intergenic |
| GAAGTGGAGAGCTTTGAGAT+TGG | 0.494282 | 8_3:-7074831 | Msa1273340:CDS |
| TGTGCTTCAGCTGATGCTGT+TGG | 0.499070 | 8_3:-7073171 | Msa1273340:three_prime_UTR |
| CCTCAATGTGGGCATCAAGC+TGG | 0.501011 | 8_3:+7073505 | None:intergenic |
| TCAGCTCTGCCGCATTGACC+AGG | 0.506358 | 8_3:+7073438 | None:intergenic |
| ATTGAGGAGCAGTTTGGTGG+TGG | 0.510507 | 8_3:-7073489 | Msa1273340:CDS |
| TGAAGGTACCATTGCTTGAA+GGG | 0.514607 | 8_3:+7074668 | None:intergenic |
| GCCCACATTGAGGAGCAGTT+TGG | 0.515176 | 8_3:-7073495 | Msa1273340:CDS |
| TGGATACCGGTAACTTCTCA+TGG | 0.515609 | 8_3:-7074811 | Msa1273340:CDS |
| CACATTGAGGAGCAGTTTGG+TGG | 0.527285 | 8_3:-7073492 | Msa1273340:CDS |
| GAAGAAACTCCAGAAGAAGA+AGG | 0.530638 | 8_3:-7073283 | Msa1273340:CDS |
| TTAATTTCTGAATACTGCAA+TGG | 0.538804 | 8_3:-7073030 | Msa1273340:three_prime_UTR |
| GTTTAACATTCTGCTTGAGC+CGG | 0.545993 | 8_3:-7076061 | None:intergenic |
| AGGAGGATTCGTGTTAGAGG+TGG | 0.553665 | 8_3:-7074860 | Msa1273340:CDS |
| CAATGCGCTTCAACTAGCTC+CGG | 0.553709 | 8_3:+7076042 | None:intergenic |
| ATGCTGCTCCCTTCAAGCAA+TGG | 0.568267 | 8_3:-7074676 | Msa1273340:CDS |
| CTCCAGAAGAAGAAGGGCAA+GGG | 0.571076 | 8_3:-7073276 | Msa1273340:CDS |
| CTGCAATTTACAGGAGGCTG+AGG | 0.571476 | 8_3:-7073595 | Msa1273340:intron |
| CAAAACTCGTTTGCTCGATG+TGG | 0.574685 | 8_3:-7074768 | Msa1273340:CDS |
| GGATACCGGTAACTTCTCAT+GGG | 0.577966 | 8_3:-7074810 | Msa1273340:CDS |
| GTCAATGCGGCAGAGCTGAT+GGG | 0.580186 | 8_3:-7073434 | Msa1273340:intron |
| CCAGCTTGATGCCCACATTG+AGG | 0.592707 | 8_3:-7073505 | Msa1273340:CDS |
| AAGAAACTCCAGAAGAAGAA+GGG | 0.596297 | 8_3:-7073282 | Msa1273340:CDS |
| ACCAAACTGCTCCTCAATGT+GGG | 0.596753 | 8_3:+7073494 | None:intergenic |
| AAATGTTAGCAAGAAAGAGG+AGG | 0.606920 | 8_3:-7074612 | Msa1273340:intron |
| CTGGTGGCAAGAAGAAAGCA+TGG | 0.611110 | 8_3:-7075835 | Msa1273340:CDS |
| ACTCCAGAAGAAGAAGGGCA+AGG | 0.618644 | 8_3:-7073277 | Msa1273340:CDS |
| CACCAAACTGCTCCTCAATG+TGG | 0.622269 | 8_3:+7073493 | None:intergenic |
| AGAGCTTTGAGATTGGATAC+CGG | 0.636809 | 8_3:-7074824 | Msa1273340:CDS |
| GTTTCATCTAGGTACGAGCT+CGG | 0.639369 | 8_3:-7074926 | Msa1273340:intron |
| TTAGAGGTGGAAATGTGAAG+TGG | 0.659708 | 8_3:-7074847 | Msa1273340:CDS |
| TCTTCTCGACCTGGTCAATG+CGG | 0.660301 | 8_3:-7073447 | Msa1273340:CDS |
| ATGGAAACAATACAATCAAG+CGG | 0.663363 | 8_3:+7073251 | None:intergenic |
| CAATGCTTCCAACAATGAGT+TGG | 0.663472 | 8_3:-7074741 | Msa1273340:CDS |
| CACAAGAGACGTGAAACTGG+TGG | 0.674239 | 8_3:-7075851 | Msa1273340:CDS |
| GATACCGGTAACTTCTCATG+GGG | 0.694944 | 8_3:-7074809 | Msa1273340:CDS |
| CAAGCAACAAGACAGTGAGG+AGG | 0.706786 | 8_3:-7074877 | Msa1273340:CDS |
| TATCAAGCAACAAGACAGTG+AGG | 0.731948 | 8_3:-7074880 | Msa1273340:CDS |
| GTGGCAAGAAGAAAGCATGG+AGG | 0.807428 | 8_3:-7075832 | Msa1273340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTCTTATTTTCTTATA+AGG | - | chr8_3:7073699-7073718 | Msa1273340:intron | 10.0% |
| !!! | ATTTTTTAACTAAGATATTT+TGG | - | chr8_3:7074056-7074075 | Msa1273340:intron | 10.0% |
| !! | ATTAAAAAGAGAGTAAAAAA+GGG | + | chr8_3:7073225-7073244 | None:intergenic | 15.0% |
| !! | TATTAAAAAGAGAGTAAAAA+AGG | + | chr8_3:7073226-7073245 | None:intergenic | 15.0% |
| !!! | TTTTGTTATTGTTTTAGAAA+TGG | - | chr8_3:7073312-7073331 | Msa1273340:CDS | 15.0% |
| !! | TAATTATAGCAAAAAGATAA+GGG | + | chr8_3:7073774-7073793 | None:intergenic | 15.0% |
| !! | ATAATTATAGCAAAAAGATA+AGG | + | chr8_3:7073775-7073794 | None:intergenic | 15.0% |
| !!! | TAGTTTACATTTCTATTTTT+TGG | - | chr8_3:7073824-7073843 | Msa1273340:intron | 15.0% |
| !!! | AGTTTACATTTCTATTTTTT+GGG | - | chr8_3:7073825-7073844 | Msa1273340:intron | 15.0% |
| !! | TTTCTGATAAATAATTCATT+AGG | - | chr8_3:7073877-7073896 | Msa1273340:intron | 15.0% |
| !! | CATTATAATATCAAAGAAAA+CGG | + | chr8_3:7074471-7074490 | None:intergenic | 15.0% |
| !!! | TTTATTCATCTTAAATTTTG+TGG | - | chr8_3:7075256-7075275 | Msa1273340:intron | 15.0% |
| !! | GTATTATTTAATCCTGAAAT+GGG | - | chr8_3:7073592-7073611 | Msa1273340:intron | 20.0% |
| !! | TATTATTTAATCCTGAAATG+GGG | - | chr8_3:7073593-7073612 | Msa1273340:intron | 20.0% |
| !!! | AATTATTTTTCTCACAAACA+CGG | - | chr8_3:7073789-7073808 | Msa1273340:intron | 20.0% |
| !!! | TATTTTTTGGGATAGTTTTT+TGG | - | chr8_3:7073837-7073856 | Msa1273340:intron | 20.0% |
| !!! | TTTTAACTAAGATATTTTGG+TGG | - | chr8_3:7074059-7074078 | Msa1273340:intron | 20.0% |
| !! | AAAACCAGTATAAAAATTGT+GGG | + | chr8_3:7074549-7074568 | None:intergenic | 20.0% |
| !! | TTGGTTGTTTAAATGTTATT+TGG | - | chr8_3:7074567-7074586 | Msa1273340:intron | 20.0% |
| !!! | AATTTTGTCTTGAAAACATA+GGG | + | chr8_3:7075150-7075169 | None:intergenic | 20.0% |
| !!! | TAATTTTGTCTTGAAAACAT+AGG | + | chr8_3:7075151-7075170 | None:intergenic | 20.0% |
| ! | TTCAATTCAACTTTCTCTAA+TGG | - | chr8_3:7073078-7073097 | Msa1273340:three_prime_UTR | 25.0% |
| ! | TCAATTCAACTTTCTCTAAT+GGG | - | chr8_3:7073079-7073098 | Msa1273340:three_prime_UTR | 25.0% |
| ! | TGATTTATGTGTTGAAATTC+TGG | - | chr8_3:7073269-7073288 | Msa1273340:CDS | 25.0% |
| ! | GATTTATGTGTTGAAATTCT+GGG | - | chr8_3:7073270-7073289 | Msa1273340:CDS | 25.0% |
| !!! | TGTTATTGTTTTAGAAATGG+TGG | - | chr8_3:7073315-7073334 | Msa1273340:CDS | 25.0% |
| !!! | GTTATTGTTTTAGAAATGGT+GGG | - | chr8_3:7073316-7073335 | Msa1273340:CDS | 25.0% |
| !!! | CAGTGTTAGTTTTTAGATTT+TGG | - | chr8_3:7073472-7073491 | Msa1273340:CDS | 25.0% |
| ! | CGTATTATTTAATCCTGAAA+TGG | - | chr8_3:7073591-7073610 | Msa1273340:intron | 25.0% |
| ! | TGACATAATTCACAAAATCT+TGG | + | chr8_3:7073621-7073640 | None:intergenic | 25.0% |
| !! | TCAAATTGCAGTTCATATTT+TGG | - | chr8_3:7073638-7073657 | Msa1273340:intron | 25.0% |
| ! | TCTTATTGTTGTATCATATC+TGG | + | chr8_3:7073678-7073697 | None:intergenic | 25.0% |
| !!! | ATTATTTTTCTCACAAACAC+GGG | - | chr8_3:7073790-7073809 | Msa1273340:intron | 25.0% |
| ! | GTCTCAATCTTATTATTTGT+TGG | - | chr8_3:7074005-7074024 | Msa1273340:intron | 25.0% |
| ! | TTAAAGATCAGTTAATCACT+TGG | - | chr8_3:7074498-7074517 | Msa1273340:intron | 25.0% |
| ! | CAAAACCAGTATAAAAATTG+TGG | + | chr8_3:7074550-7074569 | None:intergenic | 25.0% |
| !!! | CACAATTTTTATACTGGTTT+TGG | - | chr8_3:7074548-7074567 | Msa1273340:intron | 25.0% |
| !! | TGTTTAAATGTTATTTGGCT+TGG | - | chr8_3:7074572-7074591 | Msa1273340:intron | 25.0% |
| !! | GTTTAAATGTTATTTGGCTT+GGG | - | chr8_3:7074573-7074592 | Msa1273340:intron | 25.0% |
| ! | TAATAATCTCTGCAATTTAC+AGG | - | chr8_3:7075403-7075422 | Msa1273340:intron | 25.0% |
| ! | TTCGAGGAAAAAAAAAAGTT+AGG | + | chr8_3:7075661-7075680 | None:intergenic | 25.0% |
| ! | ACTAATGCAATACAAAAACA+TGG | + | chr8_3:7075778-7075797 | None:intergenic | 25.0% |
| !! | ATTTTCCTTTAAACTGTTCT+TGG | - | chr8_3:7075902-7075921 | Msa1273340:intron | 25.0% |
| ! | AATAACCAAGAACAGTTTAA+AGG | + | chr8_3:7075910-7075929 | None:intergenic | 25.0% |
| ! | TGCAGTATTCAGAAATTAAT+CGG | + | chr8_3:7075976-7075995 | None:intergenic | 25.0% |
| ! | TTAATTTCTGAATACTGCAA+TGG | - | chr8_3:7075977-7075996 | Msa1273340:intron | 25.0% |
| ATTGATTGAAGCAGATTAGA+AGG | + | chr8_3:7073031-7073050 | None:intergenic | 30.0% | |
| !!! | GATTGTTGATTTTGAATCTC+AGG | - | chr8_3:7073114-7073133 | Msa1273340:three_prime_UTR | 30.0% |
| !!! | ACTTTTTTTTTCAATGCTCG+TGG | - | chr8_3:7073362-7073381 | Msa1273340:intron | 30.0% |
| !! | TTTATTGATGATGTGGGAAT+TGG | - | chr8_3:7073401-7073420 | Msa1273340:intron | 30.0% |
| !! | TTATTTTTCTCACAAACACG+GGG | - | chr8_3:7073791-7073810 | Msa1273340:intron | 30.0% |
| ATCAGAAAATATGTGCTATC+TGG | + | chr8_3:7073865-7073884 | None:intergenic | 30.0% | |
| !! | TTATTTGTTGGCTTTCTGTT+TGG | - | chr8_3:7074017-7074036 | Msa1273340:intron | 30.0% |
| !!! | ATATTTTGGTGGTTTCATCT+AGG | - | chr8_3:7074070-7074089 | Msa1273340:intron | 30.0% |
| GAAAAATGTTAGCAAGAAAG+AGG | - | chr8_3:7074392-7074411 | Msa1273340:intron | 30.0% | |
| ! | TATGCCCACAATTTTTATAC+TGG | - | chr8_3:7074542-7074561 | Msa1273340:intron | 30.0% |
| ! | TCTTATTTCGTTATTCACCA+TGG | - | chr8_3:7074925-7074944 | Msa1273340:intron | 30.0% |
| TAACACATAAAAGACACCAT+GGG | + | chr8_3:7075182-7075201 | None:intergenic | 30.0% | |
| TTAACACATAAAAGACACCA+TGG | + | chr8_3:7075183-7075202 | None:intergenic | 30.0% | |
| !!! | GTGGATTTAGTTTTAGATGT+CGG | - | chr8_3:7075275-7075294 | Msa1273340:intron | 30.0% |
| !!! | TGGATTTAGTTTTAGATGTC+GGG | - | chr8_3:7075276-7075295 | Msa1273340:intron | 30.0% |
| TCAGTTTCAACATATACATG+AGG | + | chr8_3:7075324-7075343 | None:intergenic | 30.0% | |
| GAGGAAAAAAAAAAGTTAGG+AGG | + | chr8_3:7075658-7075677 | None:intergenic | 30.0% | |
| ATGGAAACAATACAATCAAG+CGG | + | chr8_3:7075759-7075778 | None:intergenic | 30.0% | |
| TTCATCCAGTTTCTTCAAGA+TGG | - | chr8_3:7072996-7073015 | Msa1273340:three_prime_UTR | 35.0% | |
| TCATCCAGTTTCTTCAAGAT+GGG | - | chr8_3:7072997-7073016 | Msa1273340:three_prime_UTR | 35.0% | |
| ! | TGCTCGTGGCTATTATATTT+TGG | - | chr8_3:7073376-7073395 | Msa1273340:intron | 35.0% |
| ! | GCTCGTGGCTATTATATTTT+GGG | - | chr8_3:7073377-7073396 | Msa1273340:intron | 35.0% |
| ! | CTCGTGGCTATTATATTTTG+GGG | - | chr8_3:7073378-7073397 | Msa1273340:intron | 35.0% |
| !! | TTTGGGGTTTATTGATGATG+TGG | - | chr8_3:7073394-7073413 | Msa1273340:intron | 35.0% |
| !! | TTGGGGTTTATTGATGATGT+GGG | - | chr8_3:7073395-7073414 | Msa1273340:intron | 35.0% |
| ! | TATTTTTCTCACAAACACGG+GGG | - | chr8_3:7073792-7073811 | Msa1273340:intron | 35.0% |
| TTGTACATGAATGTCTGAAC+TGG | - | chr8_3:7073981-7074000 | Msa1273340:intron | 35.0% | |
| TGTACATGAATGTCTGAACT+GGG | - | chr8_3:7073982-7074001 | Msa1273340:intron | 35.0% | |
| !!! | CTTGATAGTTTTGTGTTAGC+TGG | + | chr8_3:7074114-7074133 | None:intergenic | 35.0% |
| ! | TATCAACACCATAGTGTTGA+AGG | + | chr8_3:7074359-7074378 | None:intergenic | 35.0% |
| !! | CAACACTATGGTGTTGATAT+TGG | - | chr8_3:7074360-7074379 | Msa1273340:intron | 35.0% |
| AAATGTTAGCAAGAAAGAGG+AGG | - | chr8_3:7074395-7074414 | Msa1273340:intron | 35.0% | |
| GAAAGAGGAGGTAATGTTAA+TGG | - | chr8_3:7074407-7074426 | Msa1273340:intron | 35.0% | |
| !! | TATGGTGTCGTATTTGTGTT+TGG | + | chr8_3:7074727-7074746 | None:intergenic | 35.0% |
| ! | AATGAAGTATCAGTGAACAG+TGG | + | chr8_3:7074759-7074778 | None:intergenic | 35.0% |
| ATTAGGGAAGAAGAAGAAGA+AGG | - | chr8_3:7075064-7075083 | Msa1273340:intron | 35.0% | |
| TTAGGGAAGAAGAAGAAGAA+GGG | - | chr8_3:7075065-7075084 | Msa1273340:intron | 35.0% | |
| CAAAATTACTAAGTTGCCCA+TGG | - | chr8_3:7075163-7075182 | Msa1273340:intron | 35.0% | |
| !!! | TAGTTTTAGATGTCGGGATA+AGG | - | chr8_3:7075282-7075301 | Msa1273340:intron | 35.0% |
| GTTTCAACATATACATGAGG+TGG | + | chr8_3:7075321-7075340 | None:intergenic | 35.0% | |
| TAATCTCTGCAATTTACAGG+AGG | - | chr8_3:7075406-7075425 | Msa1273340:intron | 35.0% | |
| ! | CTCTAATTTTCTCTGCACAT+GGG | + | chr8_3:7075465-7075484 | None:intergenic | 35.0% |
| ATATGCAGCTACATTCTTGA+AGG | - | chr8_3:7075680-7075699 | Msa1273340:intron | 35.0% | |
| AAGAAACTCCAGAAGAAGAA+GGG | - | chr8_3:7075725-7075744 | Msa1273340:intron | 35.0% | |
| GCACAAAACATCTCTTTGTT+CGG | + | chr8_3:7075821-7075840 | None:intergenic | 35.0% | |
| !! | TCATAGTACTGACTACTATC+AGG | - | chr8_3:7076006-7076025 | Msa1273340:intron | 35.0% |
| TGTACCCATCTTGAAGAAAC+TGG | + | chr8_3:7073004-7073023 | None:intergenic | 40.0% | |
| AAATCTTGGTACCCCATTTC+AGG | + | chr8_3:7073607-7073626 | None:intergenic | 40.0% | |
| GACATTCATGTACAAAGCAC+AGG | + | chr8_3:7073976-7073995 | None:intergenic | 40.0% | |
| GTACATGAATGTCTGAACTG+GGG | - | chr8_3:7073983-7074002 | Msa1273340:intron | 40.0% | |
| !!! | ATAGTTTTGTGTTAGCTGGC+TGG | + | chr8_3:7074110-7074129 | None:intergenic | 40.0% |
| TATCAAGCAACAAGACAGTG+AGG | - | chr8_3:7074127-7074146 | Msa1273340:intron | 40.0% | |
| TTAGAGGTGGAAATGTGAAG+TGG | - | chr8_3:7074160-7074179 | Msa1273340:intron | 40.0% | |
| !! | AGAGCTTTGAGATTGGATAC+CGG | - | chr8_3:7074183-7074202 | Msa1273340:intron | 40.0% |
| CAATGCTTCCAACAATGAGT+TGG | - | chr8_3:7074266-7074285 | Msa1273340:intron | 40.0% | |
| !! | TGTGAAGAGTGCTATTGTTC+AGG | - | chr8_3:7074305-7074324 | Msa1273340:intron | 40.0% |
| !! | TGAAGGTACCATTGCTTGAA+GGG | + | chr8_3:7074342-7074361 | None:intergenic | 40.0% |
| !! | TTGAAGGTACCATTGCTTGA+AGG | + | chr8_3:7074343-7074362 | None:intergenic | 40.0% |
| CAATGGTACCTTCAACACTA+TGG | - | chr8_3:7074348-7074367 | Msa1273340:intron | 40.0% | |
| TATCAGTGAACAGTGGCATA+CGG | + | chr8_3:7074752-7074771 | None:intergenic | 40.0% | |
| TCGTTATTCACCATGGAAGA+AGG | - | chr8_3:7074932-7074951 | Msa1273340:intron | 40.0% | |
| ATCTGAAGGAAGTGGGTATT+AGG | - | chr8_3:7075047-7075066 | Msa1273340:intron | 40.0% | |
| TCTGAAGGAAGTGGGTATTA+GGG | - | chr8_3:7075048-7075067 | Msa1273340:intron | 40.0% | |
| AAGGGTGAGGAAGAAGAAAT+GGG | - | chr8_3:7075083-7075102 | Msa1273340:intron | 40.0% | |
| TTTAGATGTCGGGATAAGGT+TGG | - | chr8_3:7075286-7075305 | Msa1273340:intron | 40.0% | |
| ! | GCTCTAATTTTCTCTGCACA+TGG | + | chr8_3:7075466-7075485 | None:intergenic | 40.0% |
| AGAATGTAGCTGCATATTCG+AGG | + | chr8_3:7075677-7075696 | None:intergenic | 40.0% | |
| CAGCTACATTCTTGAAGGTA+AGG | - | chr8_3:7075685-7075704 | Msa1273340:intron | 40.0% | |
| GAAGAAACTCCAGAAGAAGA+AGG | - | chr8_3:7075724-7075743 | Msa1273340:intron | 40.0% | |
| ATGCACAAGAGACGTGAAAC+TGG | - | chr8_3:7073153-7073172 | Msa1273340:three_prime_UTR | 45.0% | |
| GTTTCATCTAGGTACGAGCT+CGG | - | chr8_3:7074081-7074100 | Msa1273340:intron | 45.0% | |
| !! | GAAGTGGAGAGCTTTGAGAT+TGG | - | chr8_3:7074176-7074195 | Msa1273340:intron | 45.0% |
| TGGATACCGGTAACTTCTCA+TGG | - | chr8_3:7074196-7074215 | Msa1273340:intron | 45.0% | |
| GGATACCGGTAACTTCTCAT+GGG | - | chr8_3:7074197-7074216 | Msa1273340:intron | 45.0% | |
| GATACCGGTAACTTCTCATG+GGG | - | chr8_3:7074198-7074217 | Msa1273340:intron | 45.0% | |
| ACTTCCCCATGAGAAGTTAC+CGG | + | chr8_3:7074205-7074224 | None:intergenic | 45.0% | |
| ! | CAAACGAGTTTTGCGAGTGA+CGG | + | chr8_3:7074232-7074251 | None:intergenic | 45.0% |
| CAAAACTCGTTTGCTCGATG+TGG | - | chr8_3:7074239-7074258 | Msa1273340:intron | 45.0% | |
| AGTTCGCACCAACTCATTGT+TGG | + | chr8_3:7074277-7074296 | None:intergenic | 45.0% | |
| GAACAGTGGCATACGGTATA+TGG | + | chr8_3:7074745-7074764 | None:intergenic | 45.0% | |
| ATGAGAGAGTAGCAGAGAAG+GGG | + | chr8_3:7074831-7074850 | None:intergenic | 45.0% | |
| GATGAGAGAGTAGCAGAGAA+GGG | + | chr8_3:7074832-7074851 | None:intergenic | 45.0% | |
| TGATGAGAGAGTAGCAGAGA+AGG | + | chr8_3:7074833-7074852 | None:intergenic | 45.0% | |
| TGGTTCTTCTTGATCCGAGT+CGG | + | chr8_3:7074975-7074994 | None:intergenic | 45.0% | |
| ! | GCAATTGAATCGGAGTGTCT+TGG | + | chr8_3:7074995-7075014 | None:intergenic | 45.0% |
| ACACTCCGATTCAATTGCAC+CGG | - | chr8_3:7074997-7075016 | Msa1273340:intron | 45.0% | |
| AGTGCAGATCTGAAGGAAGT+GGG | - | chr8_3:7075040-7075059 | Msa1273340:intron | 45.0% | |
| GAAGAAGAAGAAGAAGGGTG+AGG | - | chr8_3:7075070-7075089 | Msa1273340:intron | 45.0% | |
| GAAGGGTGAGGAAGAAGAAA+TGG | - | chr8_3:7075082-7075101 | Msa1273340:intron | 45.0% | |
| AACAGAGAAGAGGATGGGAA+TGG | - | chr8_3:7075110-7075129 | Msa1273340:intron | 45.0% | |
| ACCAAACTGCTCCTCAATGT+GGG | + | chr8_3:7075516-7075535 | None:intergenic | 45.0% | |
| !! | TTAAAAAATAATCATAAATT+AGG | + | chr8_3:7074045-7074064 | None:intergenic | 5.0% |
| CAATGCGCTTCAACTAGCTC+CGG | + | chr8_3:7072968-7072987 | None:intergenic | 50.0% | |
| CACAAGAGACGTGAAACTGG+TGG | - | chr8_3:7073156-7073175 | Msa1273340:three_prime_UTR | 50.0% | |
| CTGGTGGCAAGAAGAAAGCA+TGG | - | chr8_3:7073172-7073191 | Msa1273340:three_prime_UTR | 50.0% | |
| ! | GTGGCAAGAAGAAAGCATGG+AGG | - | chr8_3:7073175-7073194 | Msa1273340:three_prime_UTR | 50.0% |
| TTTCTCACAAACACGGGGGT+TGG | - | chr8_3:7073796-7073815 | Msa1273340:intron | 50.0% | |
| CAAGCAACAAGACAGTGAGG+AGG | - | chr8_3:7074130-7074149 | Msa1273340:intron | 50.0% | |
| GTGAGGAGGATTCGTGTTAG+AGG | - | chr8_3:7074144-7074163 | Msa1273340:intron | 50.0% | |
| AGGAGGATTCGTGTTAGAGG+TGG | - | chr8_3:7074147-7074166 | Msa1273340:intron | 50.0% | |
| ATGCTGCTCCCTTCAAGCAA+TGG | - | chr8_3:7074331-7074350 | Msa1273340:intron | 50.0% | |
| ACCATGGAAGAAGGACGTGA+AGG | - | chr8_3:7074941-7074960 | Msa1273340:intron | 50.0% | |
| CCATGGAAGAAGGACGTGAA+GGG | - | chr8_3:7074942-7074961 | Msa1273340:intron | 50.0% | |
| CATCGCCGGTGCAATTGAAT+CGG | + | chr8_3:7075005-7075024 | None:intergenic | 50.0% | |
| TTGCACCACTTTCTCATCGC+CGG | + | chr8_3:7075019-7075038 | None:intergenic | 50.0% | |
| ! | GTGCAAGAGTGCAGATCTGA+AGG | - | chr8_3:7075033-7075052 | Msa1273340:intron | 50.0% |
| GAGTGCAGATCTGAAGGAAG+TGG | - | chr8_3:7075039-7075058 | Msa1273340:intron | 50.0% | |
| AATGGGTCGCAACAGAGAAG+AGG | - | chr8_3:7075100-7075119 | Msa1273340:intron | 50.0% | |
| GTCGCAACAGAGAAGAGGAT+GGG | - | chr8_3:7075105-7075124 | Msa1273340:intron | 50.0% | |
| CTGCAATTTACAGGAGGCTG+AGG | - | chr8_3:7075412-7075431 | Msa1273340:intron | 50.0% | |
| CATCAAGCTGGCGTTCTTTC+TGG | + | chr8_3:7075493-7075512 | None:intergenic | 50.0% | |
| CACCAAACTGCTCCTCAATG+TGG | + | chr8_3:7075517-7075536 | None:intergenic | 50.0% | |
| CACATTGAGGAGCAGTTTGG+TGG | - | chr8_3:7075515-7075534 | Msa1273340:intron | 50.0% | |
| ! | ATTGAGGAGCAGTTTGGTGG+TGG | - | chr8_3:7075518-7075537 | Msa1273340:intron | 50.0% |
| GCATGCATTTCTTCTCGACC+TGG | - | chr8_3:7075551-7075570 | Msa1273340:intron | 50.0% | |
| TCTTCTCGACCTGGTCAATG+CGG | - | chr8_3:7075560-7075579 | Msa1273340:intron | 50.0% | |
| ACTCCAGAAGAAGAAGGGCA+AGG | - | chr8_3:7075730-7075749 | Msa1273340:intron | 50.0% | |
| CTCCAGAAGAAGAAGGGCAA+GGG | - | chr8_3:7075731-7075750 | Msa1273340:intron | 50.0% | |
| TGTGCTTCAGCTGATGCTGT+TGG | - | chr8_3:7075836-7075855 | Msa1273340:CDS | 50.0% | |
| CAGAGAAGGGGAAGAGGAAG+AGG | + | chr8_3:7074819-7074838 | None:intergenic | 55.0% | |
| GAGTAGCAGAGAAGGGGAAG+AGG | + | chr8_3:7074825-7074844 | None:intergenic | 55.0% | |
| AGTTATCTCTCTCACGCCGC+CGG | + | chr8_3:7074906-7074925 | None:intergenic | 55.0% | |
| CCCTTCACGTCCTTCTTCCA+TGG | + | chr8_3:7074945-7074964 | None:intergenic | 55.0% | |
| TGAAGGGTCTGAGTCCGACT+CGG | - | chr8_3:7074958-7074977 | Msa1273340:intron | 55.0% | |
| ! | TTGCACCGGCGATGAGAAAG+TGG | - | chr8_3:7075011-7075030 | Msa1273340:intron | 55.0% |
| GGTCGCAACAGAGAAGAGGA+TGG | - | chr8_3:7075104-7075123 | Msa1273340:intron | 55.0% | |
| CCTCAATGTGGGCATCAAGC+TGG | + | chr8_3:7075505-7075524 | None:intergenic | 55.0% | |
| CCAGCTTGATGCCCACATTG+AGG | - | chr8_3:7075502-7075521 | Msa1273340:intron | 55.0% | |
| GCCCACATTGAGGAGCAGTT+TGG | - | chr8_3:7075512-7075531 | Msa1273340:intron | 55.0% | |
| GTCAATGCGGCAGAGCTGAT+GGG | - | chr8_3:7075573-7075592 | Msa1273340:intron | 55.0% | |
| CACCCTTGCCCTTCTTCTTC+TGG | + | chr8_3:7075736-7075755 | None:intergenic | 55.0% | |
| TCCTCTTCTCTGCCACTCGC+CGG | - | chr8_3:7074853-7074872 | Msa1273340:CDS | 60.0% | |
| GAACGACGACGGAGAGAGAG+AGG | + | chr8_3:7074882-7074901 | None:intergenic | 60.0% | |
| CTCTCTCCGTCGTCGTTCTC+CGG | - | chr8_3:7074884-7074903 | Msa1273340:CDS | 60.0% | |
| ! | TCAGCTCTGCCGCATTGACC+AGG | + | chr8_3:7075572-7075591 | None:intergenic | 60.0% |
| GGTCAATGCGGCAGAGCTGA+TGG | - | chr8_3:7075572-7075591 | Msa1273340:intron | 60.0% | |
| GACGGAGAGAGAGAGGTCGC+CGG | + | chr8_3:7074875-7074894 | None:intergenic | 65.0% | |
| TCTCCGTCGTCGTTCTCCGG+CGG | - | chr8_3:7074887-7074906 | Msa1273340:CDS | 65.0% | |
| GCCGGCGAGTGGCAGAGAAG+AGG | + | chr8_3:7074857-7074876 | None:intergenic | 70.0% | |
| AGAGAGAGGTCGCCGGCGAG+TGG | + | chr8_3:7074868-7074887 | None:intergenic | 70.0% | |
| ACGCCGCCGGAGAACGACGA+CGG | + | chr8_3:7074893-7074912 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 7072956 | 7076073 | 7072956 | ID=Msa1273340;Name=Msa1273340 |
| chr8_3 | mRNA | 7072956 | 7076073 | 7072956 | ID=Msa1273340-mRNA-1;Parent=Msa1273340;Name=Msa1273340-mRNA-1;_AED=0.06;_eAED=0.06;_QI=59|1|1|1|1|1|5|310|215 |
| chr8_3 | exon | 7072956 | 7073341 | 7072956 | ID=Msa1273340-mRNA-1:exon:2758;Parent=Msa1273340-mRNA-1 |
| chr8_3 | exon | 7073435 | 7073604 | 7073435 | ID=Msa1273340-mRNA-1:exon:2757;Parent=Msa1273340-mRNA-1 |
| chr8_3 | exon | 7074613 | 7074937 | 7074613 | ID=Msa1273340-mRNA-1:exon:2756;Parent=Msa1273340-mRNA-1 |
| chr8_3 | exon | 7075821 | 7075893 | 7075821 | ID=Msa1273340-mRNA-1:exon:2755;Parent=Msa1273340-mRNA-1 |
| chr8_3 | exon | 7076011 | 7076073 | 7076011 | ID=Msa1273340-mRNA-1:exon:2754;Parent=Msa1273340-mRNA-1 |
| chr8_3 | five_prime_UTR | 7076015 | 7076073 | 7076015 | ID=Msa1273340-mRNA-1:five_prime_utr;Parent=Msa1273340-mRNA-1 |
| chr8_3 | CDS | 7076011 | 7076014 | 7076011 | ID=Msa1273340-mRNA-1:cds;Parent=Msa1273340-mRNA-1 |
| chr8_3 | CDS | 7075821 | 7075893 | 7075821 | ID=Msa1273340-mRNA-1:cds;Parent=Msa1273340-mRNA-1 |
| chr8_3 | CDS | 7074613 | 7074937 | 7074613 | ID=Msa1273340-mRNA-1:cds;Parent=Msa1273340-mRNA-1 |
| chr8_3 | CDS | 7073435 | 7073604 | 7073435 | ID=Msa1273340-mRNA-1:cds;Parent=Msa1273340-mRNA-1 |
| chr8_3 | CDS | 7073266 | 7073341 | 7073266 | ID=Msa1273340-mRNA-1:cds;Parent=Msa1273340-mRNA-1 |
| chr8_3 | three_prime_UTR | 7072956 | 7073265 | 7072956 | ID=Msa1273340-mRNA-1:three_prime_utr;Parent=Msa1273340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
