AlfalfaGEDB | Msa1273340

M. sativa cultivar zhongmu-4 / Msa1273340

KEGG: K02995
GO: GO:0000313 GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043253 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904
PFAM: PF01201.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1273340	XP_013444087.1	100.000	215	0	0	1	215	1	215	4.79e-155	438

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1273340	sp\|Q08069\|RS8_MAIZE	85.845	219	26	1	1	214	1	219	2.01e-136	384

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1273340	I3T3T7	100.000	215	0	0	1	215	1	215	2.29e-155	438

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002750	Msa1273340	0.829865	4.052473e-55	-8.615850e-47
Msa0002790	Msa1273340	0.816951	4.244427e-52	-8.615850e-47
Msa0032780	Msa1273340	0.819233	1.293509e-52	-8.615850e-47
Msa0048180	Msa1273340	0.814224	1.718034e-51	-8.615850e-47
Msa0052790	Msa1273340	0.816479	5.412971e-52	-8.615850e-47
Msa0086750	Msa1273340	0.826891	2.114520e-54	-8.615850e-47
Msa0097580	Msa1273340	0.802874	4.561483e-49	-8.615850e-47
Msa0116670	Msa1273340	0.817608	3.019239e-52	-8.615850e-47
Msa0133540	Msa1273340	0.824165	9.358367e-54	-8.615850e-47
Msa0172900	Msa1273340	0.803629	3.181766e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1273340	MtrunA17_Chr8g0339111	100.000	215	0	0	1	215	1	215	4.40e-159	438
Msa1273340	MtrunA17_Chr7g0234781	91.705	217	16	1	1	215	1	217	9.26e-127	356
Msa1273340	MtrunA17_Chr4g0006811	86.528	193	23	2	26	215	5	197	6.47e-117	331
Msa1273340	MtrunA17_Chr8g0339121	86.387	191	24	1	26	214	5	195	1.23e-110	316
Msa1273340	MtrunA17_Chr4g0006791	73.494	83	21	1	134	215	12	94	4.64e-36	122

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1273340	AT5G59240.1	85.714	203	22	1	1	203	1	196	1.69e-126	356
Msa1273340	AT5G20290.1	80.476	210	34	1	1	203	1	210	1.04e-108	311

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Find 60 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTTAGCAAGAAAGAGG+AGG	0.606920	8_3:-7074612	Msa1273340:intron
AAGAAACTCCAGAAGAAGAA+GGG	0.596297	8_3:-7073282	Msa1273340:CDS
AATAACCAAGAACAGTTTAA+AGG	0.276098	8_3:+7073100	None:intergenic
ACCAAACTGCTCCTCAATGT+GGG	0.596753	8_3:+7073494	None:intergenic
ACTCCAGAAGAAGAAGGGCA+AGG	0.618644	8_3:-7073277	Msa1273340:CDS
ACTTCCCCATGAGAAGTTAC+CGG	0.438688	8_3:+7074805	None:intergenic
AGAGCTTTGAGATTGGATAC+CGG	0.636809	8_3:-7074824	Msa1273340:CDS
AGGAGGATTCGTGTTAGAGG+TGG	0.553665	8_3:-7074860	Msa1273340:CDS
AGTTCGCACCAACTCATTGT+TGG	0.421739	8_3:+7074733	None:intergenic
ATATGCAGCTACATTCTTGA+AGG	0.462284	8_3:-7073327	Msa1273340:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGATTGAAGCAGATTAGA+AGG	+	chr8_3:7073031-7073050	None:intergenic	30.0%
ATCAGAAAATATGTGCTATC+TGG	+	chr8_3:7073865-7073884	None:intergenic	30.0%
GAAAAATGTTAGCAAGAAAG+AGG	-	chr8_3:7074392-7074411	Msa1273340:intron	30.0%
TAACACATAAAAGACACCAT+GGG	+	chr8_3:7075182-7075201	None:intergenic	30.0%
TTAACACATAAAAGACACCA+TGG	+	chr8_3:7075183-7075202	None:intergenic	30.0%
TCAGTTTCAACATATACATG+AGG	+	chr8_3:7075324-7075343	None:intergenic	30.0%
GAGGAAAAAAAAAAGTTAGG+AGG	+	chr8_3:7075658-7075677	None:intergenic	30.0%
ATGGAAACAATACAATCAAG+CGG	+	chr8_3:7075759-7075778	None:intergenic	30.0%
TTCATCCAGTTTCTTCAAGA+TGG	-	chr8_3:7072996-7073015	Msa1273340:three_prime_UTR	35.0%
TCATCCAGTTTCTTCAAGAT+GGG	-	chr8_3:7072997-7073016	Msa1273340:three_prime_UTR	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	7072956	7076073	7072956	ID=Msa1273340;Name=Msa1273340
chr8_3	mRNA	7072956	7076073	7072956	ID=Msa1273340-mRNA-1;Parent=Msa1273340;Name=Msa1273340-mRNA-1;_AED=0.06;_eAED=0.06;_QI=59\|1\|1\|1\|1\|1\|5\|310\|215
chr8_3	exon	7072956	7073341	7072956	ID=Msa1273340-mRNA-1:exon:2758;Parent=Msa1273340-mRNA-1
chr8_3	exon	7073435	7073604	7073435	ID=Msa1273340-mRNA-1:exon:2757;Parent=Msa1273340-mRNA-1
chr8_3	exon	7074613	7074937	7074613	ID=Msa1273340-mRNA-1:exon:2756;Parent=Msa1273340-mRNA-1
chr8_3	exon	7075821	7075893	7075821	ID=Msa1273340-mRNA-1:exon:2755;Parent=Msa1273340-mRNA-1
chr8_3	exon	7076011	7076073	7076011	ID=Msa1273340-mRNA-1:exon:2754;Parent=Msa1273340-mRNA-1
chr8_3	five_prime_UTR	7076015	7076073	7076015	ID=Msa1273340-mRNA-1:five_prime_utr;Parent=Msa1273340-mRNA-1
chr8_3	CDS	7076011	7076014	7076011	ID=Msa1273340-mRNA-1:cds;Parent=Msa1273340-mRNA-1
chr8_3	CDS	7075821	7075893	7075821	ID=Msa1273340-mRNA-1:cds;Parent=Msa1273340-mRNA-1
chr8_3	CDS	7074613	7074937	7074613	ID=Msa1273340-mRNA-1:cds;Parent=Msa1273340-mRNA-1
chr8_3	CDS	7073435	7073604	7073435	ID=Msa1273340-mRNA-1:cds;Parent=Msa1273340-mRNA-1
chr8_3	CDS	7073266	7073341	7073266	ID=Msa1273340-mRNA-1:cds;Parent=Msa1273340-mRNA-1
chr8_3	three_prime_UTR	7072956	7073265	7072956	ID=Msa1273340-mRNA-1:three_prime_utr;Parent=Msa1273340-mRNA-1

Gene Sequence

>Msa1273340

ATGGGTATTTCACGAGATTCTATGCACAAGAGACGTGAAACTGGTGGCAAGAAGAAAGCATGGAGGAAGAAGAGAAAGTACGAGCTCGGTCGCCAGCCAGCTAACACAAAACTATCAAGCAACAAGACAGTGAGGAGGATTCGTGTTAGAGGTGGAAATGTGAAGTGGAGAGCTTTGAGATTGGATACCGGTAACTTCTCATGGGGAAGTGAAGCCGTCACTCGCAAAACTCGTTTGCTCGATGTGGTGTACAATGCTTCCAACAATGAGTTGGTGCGAACTCAGACTCTTGTGAAGAGTGCTATTGTTCAGGTTGATGCTGCTCCCTTCAAGCAATGGTACCTTCAACACTATGGTGTTGATATTGGTAGAAAGAAGAAAAATGTTAGCAAGAAAGAGGAGGAGGCTGAGGCTGCTACAGAAGAAGTCAAAAAGAGTGCCCATGTGCAGAGAAAATTAGAGCAACGCCAGAAAGAACGCCAGCTTGATGCCCACATTGAGGAGCAGTTTGGTGGTGGACGATTGCTTGCATGCATTTCTTCTCGACCTGGTCAATGCGGCAGAGCTGATGGCTACATTCTTGAAGGTAAGGAGCTAGAATTCTACATGAAGAAACTCCAGAAGAAGAAGGGCAAGGGTGCCGCTTGA

Protein sequence

>Msa1273340

MGISRDSMHKRRETGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKNVSKKEEEAEAATEEVKKSAHVQRKLEQRQKERQLDAHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA*