Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1378230 | XP_003627298.1 | 94.944 | 178 | 9 | 0 | 1 | 178 | 449 | 626 | 9.65e-121 | 371 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1378230 | sp|Q9M5P5|RSH3L_ARATH | 73.596 | 178 | 44 | 1 | 1 | 178 | 438 | 612 | 2.83e-90 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1378230 | Q4VYD1 | 94.944 | 178 | 9 | 0 | 1 | 178 | 449 | 626 | 4.61e-121 | 371 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029850 | Msa1378230 | 0.825014 | 5.906027e-54 | -8.615850e-47 |
| Msa0051200 | Msa1378230 | 0.824035 | 1.003817e-53 | -8.615850e-47 |
| Msa0051460 | Msa1378230 | 0.834075 | 3.695405e-56 | -8.615850e-47 |
| Msa0052030 | Msa1378230 | 0.801039 | 1.086871e-48 | -8.615850e-47 |
| Msa0055240 | Msa1378230 | 0.813466 | 2.524050e-51 | -8.615850e-47 |
| Msa0057520 | Msa1378230 | 0.803817 | 2.909309e-49 | -8.615850e-47 |
| Msa0071550 | Msa1378230 | 0.812841 | 3.460788e-51 | -8.615850e-47 |
| Msa0077180 | Msa1378230 | 0.812751 | 3.620386e-51 | -8.615850e-47 |
| Msa0085720 | Msa1378230 | 0.836498 | 9.033278e-57 | -8.615850e-47 |
| Msa0101840 | Msa1378230 | 0.803977 | 2.694498e-49 | -8.615850e-47 |
| Msa0102120 | Msa1378230 | 0.853869 | 1.796112e-61 | -8.615850e-47 |
| Msa1373350 | Msa1378230 | 0.836823 | 7.463400e-57 | -8.615850e-47 |
| Msa1376930 | Msa1378230 | 0.806682 | 7.305544e-50 | -8.615850e-47 |
| Msa1377070 | Msa1378230 | 0.826758 | 2.275636e-54 | -8.615850e-47 |
| Msa1378230 | Msa1382930 | 0.808651 | 2.789028e-50 | -8.615850e-47 |
| Msa1378230 | Msa1393040 | 0.820165 | 7.923575e-53 | -8.615850e-47 |
| Msa1378230 | Msa1407600 | 0.810645 | 1.039787e-50 | -8.615850e-47 |
| Msa1378230 | Msa1407650 | 0.819667 | 1.029649e-52 | -8.615850e-47 |
| Msa1378230 | Msa1437680 | 0.837628 | 4.645378e-57 | -8.615850e-47 |
| Msa1378230 | Msa1438910 | 0.805787 | 1.127500e-49 | -8.615850e-47 |
| Msa1378230 | Msa1444250 | -0.827609 | 1.423158e-54 | -8.615850e-47 |
| Msa1378230 | Msa1444740 | 0.806591 | 7.634791e-50 | -8.615850e-47 |
| Msa1378230 | Msa1445030 | 0.832046 | 1.181607e-55 | -8.615850e-47 |
| Msa1378230 | Msa1447150 | 0.806613 | 7.555754e-50 | -8.615850e-47 |
| Msa1378230 | Msa1451620 | -0.831674 | 1.460464e-55 | -8.615850e-47 |
| Msa1378230 | Msa1454860 | 0.810609 | 1.058585e-50 | -8.615850e-47 |
| Msa1378230 | Msa1458550 | 0.800511 | 1.392789e-48 | -8.615850e-47 |
| Msa1378230 | Msa1461810 | -0.813657 | 2.290800e-51 | -8.615850e-47 |
| Msa0607540 | Msa1378230 | 0.815723 | 7.986841e-52 | -8.615850e-47 |
| Msa0615340 | Msa1378230 | 0.825753 | 3.947151e-54 | -8.615850e-47 |
| Msa0621750 | Msa1378230 | -0.826501 | 2.620600e-54 | -8.615850e-47 |
| Msa0622600 | Msa1378230 | 0.803448 | 3.469568e-49 | -8.615850e-47 |
| Msa0626990 | Msa1378230 | 0.837870 | 4.026661e-57 | -8.615850e-47 |
| Msa0627350 | Msa1378230 | 0.844808 | 6.010756e-59 | -8.615850e-47 |
| Msa0640380 | Msa1378230 | 0.804392 | 2.208526e-49 | -8.615850e-47 |
| Msa0647830 | Msa1378230 | 0.823510 | 1.332577e-53 | -8.615850e-47 |
| Msa0660300 | Msa1378230 | 0.811434 | 7.014564e-51 | -8.615850e-47 |
| Msa0678820 | Msa1378230 | 0.820739 | 5.849443e-53 | -8.615850e-47 |
| Msa0679550 | Msa1378230 | 0.818821 | 1.604524e-52 | -8.615850e-47 |
| Msa0688070 | Msa1378230 | 0.803624 | 3.189433e-49 | -8.615850e-47 |
| Msa0690440 | Msa1378230 | 0.822474 | 2.323723e-53 | -8.615850e-47 |
| Msa0698360 | Msa1378230 | 0.806608 | 7.573343e-50 | -8.615850e-47 |
| Msa0712080 | Msa1378230 | 0.817610 | 3.016385e-52 | -8.615850e-47 |
| Msa0724560 | Msa1378230 | 0.808269 | 3.364899e-50 | -8.615850e-47 |
| Msa0724950 | Msa1378230 | 0.803104 | 4.087564e-49 | -8.615850e-47 |
| Msa0731180 | Msa1378230 | 0.816828 | 4.521103e-52 | -8.615850e-47 |
| Msa0749930 | Msa1378230 | 0.836534 | 8.846483e-57 | -8.615850e-47 |
| Msa0751210 | Msa1378230 | 0.816820 | 4.541705e-52 | -8.615850e-47 |
| Msa0763080 | Msa1378230 | 0.814404 | 1.567596e-51 | -8.615850e-47 |
| Msa0801740 | Msa1378230 | 0.858334 | 8.848832e-63 | -8.615850e-47 |
| Msa0803590 | Msa1378230 | 0.807747 | 4.347012e-50 | -8.615850e-47 |
| Msa0805420 | Msa1378230 | 0.812020 | 5.229659e-51 | -8.615850e-47 |
| Msa0806200 | Msa1378230 | 0.820701 | 5.969883e-53 | -8.615850e-47 |
| Msa0807030 | Msa1378230 | 0.809890 | 1.512821e-50 | -8.615850e-47 |
| Msa0807050 | Msa1378230 | 0.843772 | 1.140836e-58 | -8.615850e-47 |
| Msa0818110 | Msa1378230 | 0.813722 | 2.216860e-51 | -8.615850e-47 |
| Msa0830420 | Msa1378230 | 0.829036 | 6.444593e-55 | -8.615850e-47 |
| Msa0831150 | Msa1378230 | 0.803502 | 3.381035e-49 | -8.615850e-47 |
| Msa0831590 | Msa1378230 | 0.815136 | 1.079175e-51 | -8.615850e-47 |
| Msa0832990 | Msa1378230 | 0.843607 | 1.262871e-58 | -8.615850e-47 |
| Msa0125050 | Msa1378230 | 0.804406 | 2.193497e-49 | -8.615850e-47 |
| Msa0143920 | Msa1378230 | 0.819197 | 1.317647e-52 | -8.615850e-47 |
| Msa0169820 | Msa1378230 | 0.825963 | 3.518681e-54 | -8.615850e-47 |
| Msa0174850 | Msa1378230 | 0.817774 | 2.769475e-52 | -8.615850e-47 |
| Msa0175050 | Msa1378230 | 0.856720 | 2.658167e-62 | -8.615850e-47 |
| Msa0178860 | Msa1378230 | -0.817272 | 3.594454e-52 | -8.615850e-47 |
| Msa0187060 | Msa1378230 | 0.816864 | 4.439431e-52 | -8.615850e-47 |
| Msa0199800 | Msa1378230 | -0.813648 | 2.301058e-51 | -8.615850e-47 |
| Msa0222340 | Msa1378230 | 0.820349 | 7.190866e-53 | -8.615850e-47 |
| Msa1230830 | Msa1378230 | 0.996980 | 4.833522e-235 | -8.615850e-47 |
| Msa1235400 | Msa1378230 | 0.915838 | 3.655389e-85 | -8.615850e-47 |
| Msa1244200 | Msa1378230 | 0.801804 | 7.573711e-49 | -8.615850e-47 |
| Msa1257600 | Msa1378230 | 0.802274 | 6.063096e-49 | -8.615850e-47 |
| Msa1258380 | Msa1378230 | -0.824744 | 6.837281e-54 | -8.615850e-47 |
| Msa1270730 | Msa1378230 | 0.800911 | 1.153985e-48 | -8.615850e-47 |
| Msa1276440 | Msa1378230 | 0.800070 | 1.712763e-48 | -8.615850e-47 |
| Msa1276510 | Msa1378230 | 0.901250 | 3.240531e-78 | -8.615850e-47 |
| Msa1279210 | Msa1378230 | 0.809503 | 1.832015e-50 | -8.615850e-47 |
| Msa1306750 | Msa1378230 | 0.815468 | 9.102863e-52 | -8.615850e-47 |
| Msa1307740 | Msa1378230 | 0.849208 | 3.747304e-60 | -8.615850e-47 |
| Msa1314770 | Msa1378230 | 0.907179 | 6.698956e-81 | -8.615850e-47 |
| Msa1322200 | Msa1378230 | 0.805133 | 1.546798e-49 | -8.615850e-47 |
| Msa0365490 | Msa1378230 | 0.828627 | 8.094970e-55 | -8.615850e-47 |
| Msa0376590 | Msa1378230 | 0.824399 | 8.245563e-54 | -8.615850e-47 |
| Msa0379640 | Msa1378230 | 0.828982 | 6.640390e-55 | -8.615850e-47 |
| Msa0388840 | Msa1378230 | 0.808531 | 2.958630e-50 | -8.615850e-47 |
| Msa0389360 | Msa1378230 | 0.803081 | 4.131916e-49 | -8.615850e-47 |
| Msa0389810 | Msa1378230 | 0.848297 | 6.705495e-60 | -8.615850e-47 |
| Msa0394340 | Msa1378230 | 0.809614 | 1.734302e-50 | -8.615850e-47 |
| Msa0409200 | Msa1378230 | 0.818545 | 1.853668e-52 | -8.615850e-47 |
| Msa0438050 | Msa1378230 | 0.842443 | 2.577640e-58 | -8.615850e-47 |
| Msa0444090 | Msa1378230 | 0.803476 | 3.422931e-49 | -8.615850e-47 |
| Msa0458440 | Msa1378230 | 0.827758 | 1.310903e-54 | -8.615850e-47 |
| Msa0464900 | Msa1378230 | 0.843082 | 1.743864e-58 | -8.615850e-47 |
| Msa0465680 | Msa1378230 | -0.809933 | 1.481154e-50 | -8.615850e-47 |
| Msa0468130 | Msa1378230 | 0.836673 | 8.151779e-57 | -8.615850e-47 |
| Msa0475490 | Msa1378230 | 0.847336 | 1.233308e-59 | -8.615850e-47 |
| Msa0477130 | Msa1378230 | -0.815001 | 1.156130e-51 | -8.615850e-47 |
| Msa0482190 | Msa1378230 | -0.824559 | 7.559620e-54 | -8.615850e-47 |
| Msa0982240 | Msa1378230 | 0.811613 | 6.414136e-51 | -8.615850e-47 |
| Msa0982270 | Msa1378230 | 0.845894 | 3.054796e-59 | -8.615850e-47 |
| Msa1002480 | Msa1378230 | 0.815382 | 9.513340e-52 | -8.615850e-47 |
| Msa1031810 | Msa1378230 | 0.801084 | 1.064031e-48 | -8.615850e-47 |
| Msa1032440 | Msa1378230 | 0.828181 | 1.036858e-54 | -8.615850e-47 |
| Msa1041600 | Msa1378230 | -0.806904 | 6.558613e-50 | -8.615850e-47 |
| Msa1068200 | Msa1378230 | -0.811105 | 8.266527e-51 | -8.615850e-47 |
| Msa1070850 | Msa1378230 | 0.815999 | 6.933510e-52 | -8.615850e-47 |
| Msa1074530 | Msa1378230 | 0.843128 | 1.694719e-58 | -8.615850e-47 |
| Msa1075080 | Msa1378230 | -0.842975 | 1.862163e-58 | -8.615850e-47 |
| Msa1080790 | Msa1378230 | 0.817589 | 3.048993e-52 | -8.615850e-47 |
| Msa1084260 | Msa1378230 | 0.801231 | 9.926864e-49 | -8.615850e-47 |
| Msa1092090 | Msa1378230 | 0.844002 | 9.897212e-59 | -8.615850e-47 |
| Msa1100480 | Msa1378230 | 0.835583 | 1.541756e-56 | -8.615850e-47 |
| Msa0271580 | Msa1378230 | 0.841227 | 5.398299e-58 | -8.615850e-47 |
| Msa0271650 | Msa1378230 | 0.832602 | 8.610145e-56 | -8.615850e-47 |
| Msa0347650 | Msa1378230 | 0.831072 | 2.054054e-55 | -8.615850e-47 |
| Msa1109820 | Msa1378230 | 0.817229 | 3.675073e-52 | -8.615850e-47 |
| Msa1118110 | Msa1378230 | 0.828056 | 1.111101e-54 | -8.615850e-47 |
| Msa1118750 | Msa1378230 | 0.803699 | 3.077919e-49 | -8.615850e-47 |
| Msa1118930 | Msa1378230 | 0.818804 | 1.618653e-52 | -8.615850e-47 |
| Msa1124540 | Msa1378230 | -0.818041 | 2.410404e-52 | -8.615850e-47 |
| Msa1132950 | Msa1378230 | 0.859355 | 4.379835e-63 | -8.615850e-47 |
| Msa1143270 | Msa1378230 | 0.804400 | 2.199876e-49 | -8.615850e-47 |
| Msa1155350 | Msa1378230 | 0.803649 | 3.151282e-49 | -8.615850e-47 |
| Msa1156340 | Msa1378230 | -0.801013 | 1.099833e-48 | -8.615850e-47 |
| Msa1158670 | Msa1378230 | 0.843503 | 1.346190e-58 | -8.615850e-47 |
| Msa1166500 | Msa1378230 | -0.804501 | 2.096018e-49 | -8.615850e-47 |
| Msa1170800 | Msa1378230 | 0.814502 | 1.491104e-51 | -8.615850e-47 |
| Msa1174310 | Msa1378230 | 0.886590 | 2.997008e-72 | -8.615850e-47 |
| Msa1202750 | Msa1378230 | 0.860256 | 2.345196e-63 | -8.615850e-47 |
| Msa1205390 | Msa1378230 | 0.806652 | 7.413704e-50 | -8.615850e-47 |
| Msa1207380 | Msa1378230 | 0.809922 | 1.489327e-50 | -8.615850e-47 |
| Msa1214880 | Msa1378230 | 0.804802 | 1.813740e-49 | -8.615850e-47 |
| Msa1217810 | Msa1378230 | 0.801817 | 7.529639e-49 | -8.615850e-47 |
| Msa1222280 | Msa1378230 | 0.819707 | 1.008058e-52 | -8.615850e-47 |
| Msa1224480 | Msa1378230 | 0.801301 | 9.607035e-49 | -8.615850e-47 |
| Msa0485500 | Msa1378230 | -0.824228 | 9.044973e-54 | -8.615850e-47 |
| Msa0489610 | Msa1378230 | 0.804157 | 2.471826e-49 | -8.615850e-47 |
| Msa0516370 | Msa1378230 | 0.803105 | 4.086474e-49 | -8.615850e-47 |
| Msa0530650 | Msa1378230 | 0.848501 | 5.888206e-60 | -8.615850e-47 |
| Msa0532810 | Msa1378230 | -0.812871 | 3.408427e-51 | -8.615850e-47 |
| Msa0553460 | Msa1378230 | 0.816731 | 4.755112e-52 | -8.615850e-47 |
| Msa0574850 | Msa1378230 | 0.837094 | 6.364800e-57 | -8.615850e-47 |
| Msa0578970 | Msa1378230 | 0.801050 | 1.081088e-48 | -8.615850e-47 |
| Msa0579130 | Msa1378230 | 0.807509 | 4.881350e-50 | -8.615850e-47 |
| Msa0580000 | Msa1378230 | 0.805667 | 1.195058e-49 | -8.615850e-47 |
| Msa0587190 | Msa1378230 | 0.834513 | 2.869887e-56 | -8.615850e-47 |
| Msa0594790 | Msa1378230 | 0.803301 | 3.722222e-49 | -8.615850e-47 |
| Msa0599580 | Msa1378230 | 0.818124 | 2.308313e-52 | -8.615850e-47 |
| Msa0842770 | Msa1378230 | 0.801473 | 8.856236e-49 | -8.615850e-47 |
| Msa0845070 | Msa1378230 | 0.818495 | 1.903065e-52 | -8.615850e-47 |
| Msa0848900 | Msa1378230 | 0.803691 | 3.089317e-49 | -8.615850e-47 |
| Msa0876850 | Msa1378230 | -0.801759 | 7.737776e-49 | -8.615850e-47 |
| Msa0881160 | Msa1378230 | 0.800559 | 1.361855e-48 | -8.615850e-47 |
| Msa0944550 | Msa1378230 | 0.818121 | 2.312859e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1378230 | MtrunA17_Chr8g0344131 | 94.944 | 178 | 9 | 0 | 1 | 178 | 449 | 626 | 8.87e-125 | 371 |
| Msa1378230 | MtrunA17_Chr5g0395711 | 47.368 | 114 | 51 | 1 | 2 | 106 | 459 | 572 | 1.32e-25 | 105 |
| Msa1378230 | MtrunA17_Chr4g0069291 | 36.036 | 111 | 57 | 2 | 2 | 98 | 323 | 433 | 4.55e-16 | 77.8 |
| Msa1378230 | MtrunA17_Chr7g0269591 | 32.026 | 153 | 87 | 3 | 3 | 140 | 386 | 536 | 2.53e-15 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1378230 | AT1G54130.1 | 73.034 | 178 | 45 | 1 | 1 | 178 | 441 | 615 | 6.73e-91 | 284 |
| Msa1378230 | AT3G14050.1 | 77.401 | 177 | 40 | 0 | 2 | 178 | 438 | 614 | 7.52e-90 | 281 |
| Msa1378230 | AT4G02260.4 | 33.529 | 170 | 78 | 4 | 4 | 139 | 389 | 557 | 2.03e-15 | 76.3 |
| Msa1378230 | AT4G02260.3 | 33.529 | 170 | 78 | 4 | 4 | 139 | 389 | 557 | 2.21e-15 | 76.3 |
| Msa1378230 | AT4G02260.2 | 41.818 | 110 | 49 | 2 | 4 | 98 | 389 | 498 | 2.41e-15 | 76.3 |
| Msa1378230 | AT3G17470.3 | 36.036 | 111 | 57 | 2 | 2 | 98 | 320 | 430 | 6.32e-14 | 71.6 |
| Msa1378230 | AT4G02260.1 | 41.441 | 111 | 49 | 3 | 4 | 98 | 389 | 499 | 8.09e-14 | 71.6 |
| Msa1378230 | AT3G17470.2 | 36.036 | 111 | 57 | 2 | 2 | 98 | 335 | 445 | 8.88e-14 | 71.2 |
| Msa1378230 | AT3G17470.1 | 36.036 | 111 | 57 | 2 | 2 | 98 | 320 | 430 | 1.04e-13 | 71.2 |
Find 62 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGATATCCATGACATTTA+TGG | 0.178626 | tig0020056:+94343 | Msa1378230:CDS |
| ATGCATTTGCAAGCAGAATT+TGG | 0.213922 | tig0020056:+94641 | Msa1378230:CDS |
| GATAAGGAACATGCATATAT+TGG | 0.258325 | tig0020056:+97669 | Msa1378230:CDS |
| CAATCAGGCTTGTAAGAATA+TGG | 0.312359 | tig0020056:-94851 | None:intergenic |
| TAGAAGTTGTTCACCGGTTA+TGG | 0.315278 | tig0020056:+94410 | Msa1378230:CDS |
| ATGATATCCATGACATTTAT+GGG | 0.372392 | tig0020056:+94344 | Msa1378230:CDS |
| GCTGAGCCTTGGACAAATAC+TGG | 0.383322 | tig0020056:-97586 | None:intergenic |
| TAACCGGTGAACAACTTCTA+AGG | 0.405585 | tig0020056:-94407 | None:intergenic |
| TTGTTCGAATTTGTACTTCA+AGG | 0.408493 | tig0020056:-94613 | None:intergenic |
| TTCCATGTTGCGCTGAGCCT+TGG | 0.411214 | tig0020056:-97597 | None:intergenic |
| CAAGCAAGATCAACGCCATT+AGG | 0.424795 | tig0020056:-97702 | None:intergenic |
| GGTCCATCCTGCTCGCAATC+AGG | 0.436241 | tig0020056:-94866 | None:intergenic |
| ATAAGGAACATGCATATATT+GGG | 0.436620 | tig0020056:+97670 | Msa1378230:CDS |
| ATCTCTGCACACTGTGGTGA+TGG | 0.443111 | tig0020056:+94574 | Msa1378230:CDS |
| AGTAAAGATTCCACTTCTGT+TGG | 0.443308 | tig0020056:+94773 | Msa1378230:CDS |
| AATTTGGATTCGCTGCTCAT+TGG | 0.445751 | tig0020056:+94657 | Msa1378230:CDS |
| TGTATTAAAAGTATTATAAA+CGG | 0.446288 | tig0020056:-97786 | None:intergenic |
| CATGCACCTCAGACCATAAC+CGG | 0.449375 | tig0020056:-94423 | None:intergenic |
| TACAACATACCCATTGAACT+TGG | 0.450219 | tig0020056:-94473 | None:intergenic |
| ATACATTGCCCCAAGTTCAA+TGG | 0.454579 | tig0020056:+94463 | Msa1378230:CDS |
| TTGGATTCGCTGCTCATTGG+AGG | 0.470246 | tig0020056:+94660 | Msa1378230:CDS |
| ATTGGGTCTTGTCAGCCTAA+TGG | 0.471002 | tig0020056:+97687 | Msa1378230:CDS |
| TACATTGCCCCAAGTTCAAT+GGG | 0.477235 | tig0020056:+94464 | Msa1378230:CDS |
| TGTTCGAATTTGTACTTCAA+GGG | 0.486391 | tig0020056:-94612 | None:intergenic |
| GCTGCGCTTGATTGTTGATA+AGG | 0.487554 | tig0020056:+94366 | Msa1378230:CDS |
| TGAAAATCACTGCATCGATA+AGG | 0.487661 | tig0020056:+97653 | Msa1378230:CDS |
| GGGCTCGATGGGTTGTCACC+TGG | 0.495606 | tig0020056:+94735 | Msa1378230:CDS |
| CGCTGCTCATTGGAGGTACA+AGG | 0.516170 | tig0020056:+94667 | Msa1378230:CDS |
| TTCTTCATATGTGCTTCAGA+TGG | 0.516537 | tig0020056:+94706 | Msa1378230:CDS |
| CGGTTATGGTCTGAGGTGCA+TGG | 0.519568 | tig0020056:+94424 | Msa1378230:CDS |
| TTACAAGCCTGATTGCGAGC+AGG | 0.526518 | tig0020056:+94859 | Msa1378230:CDS |
| ACAACATACCCATTGAACTT+GGG | 0.535483 | tig0020056:-94472 | None:intergenic |
| AGATGGTTGAGTGGGCTCGA+TGG | 0.537950 | tig0020056:+94723 | Msa1378230:CDS |
| GATGGTTGAGTGGGCTCGAT+GGG | 0.540134 | tig0020056:+94724 | Msa1378230:CDS |
| GACAGTTATCAGCATGAGAA+GGG | 0.546477 | tig0020056:-94829 | None:intergenic |
| ATCGACAAATCCAACAGAAG+TGG | 0.547140 | tig0020056:-94783 | None:intergenic |
| TATTATAAACGGAATAACAT+TGG | 0.550320 | tig0020056:-97775 | None:intergenic |
| TAACATTGGTTGAACCAGAA+AGG | 0.554837 | tig0020056:-97761 | None:intergenic |
| AGCGCAGCCCATAAATGTCA+TGG | 0.564123 | tig0020056:-94351 | None:intergenic |
| CAACATACCCATTGAACTTG+GGG | 0.571860 | tig0020056:-94471 | None:intergenic |
| TTTGGTTCATTCGTGTGCAG+AGG | 0.573717 | tig0020056:+97557 | Msa1378230:CDS |
| GGACAGTTATCAGCATGAGA+AGG | 0.573734 | tig0020056:-94830 | None:intergenic |
| TGTTCACCGGTTATGGTCTG+AGG | 0.575398 | tig0020056:+94417 | Msa1378230:CDS |
| TCTCTGCACACTGTGGTGAT+GGG | 0.580339 | tig0020056:+94575 | Msa1378230:CDS |
| AAGCCTTAGAAGTTGTTCAC+CGG | 0.583932 | tig0020056:+94404 | Msa1378230:CDS |
| CACTTAAAGGTGTCTCGATG+TGG | 0.584307 | tig0020056:-97630 | None:intergenic |
| AAGGTGTCTCGATGTGGACA+CGG | 0.587602 | tig0020056:-97624 | None:intergenic |
| GGTTATGGTCTGAGGTGCAT+GGG | 0.593196 | tig0020056:+94425 | Msa1378230:CDS |
| CACACTGTGGTGATGGGTGA+AGG | 0.596315 | tig0020056:+94581 | Msa1378230:CDS |
| GCGCTTGATTGTTGATAAGG+AGG | 0.603331 | tig0020056:+94369 | Msa1378230:CDS |
| GTTCGAATTTGTACTTCAAG+GGG | 0.605083 | tig0020056:-94611 | None:intergenic |
| GCATGAGAAGGGAACTTGCA+AGG | 0.608349 | tig0020056:-94818 | None:intergenic |
| TGTGCTTCAGATGGTTGAGT+GGG | 0.610056 | tig0020056:+94715 | Msa1378230:CDS |
| ATGTGCTTCAGATGGTTGAG+TGG | 0.615998 | tig0020056:+94714 | Msa1378230:CDS |
| TACAAGCCAGTATTTGTCCA+AGG | 0.620094 | tig0020056:+97580 | Msa1378230:CDS |
| TGTGGTGATGGGTGAAGGCA+AGG | 0.624487 | tig0020056:+94586 | Msa1378230:CDS |
| AAGCCTGATTGCGAGCAGGA+TGG | 0.626790 | tig0020056:+94863 | Msa1378230:CDS |
| GTCCAAGGCTCAGCGCAACA+TGG | 0.627467 | tig0020056:+97595 | Msa1378230:CDS |
| TCAATCATGATAACAAACAC+AGG | 0.655763 | tig0020056:-94887 | None:intergenic |
| TATCATGATTGAGAATGACA+AGG | 0.707357 | tig0020056:+94898 | Msa1378230:CDS |
| TGAGAAGGGAACTTGCAAGG+TGG | 0.737719 | tig0020056:-94815 | None:intergenic |
| TTATCAATCTCTGCACACTG+TGG | 0.751179 | tig0020056:+94568 | Msa1378230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATATTAATAAGTGATAA+GGG | - | tig0020056:95812-95831 | None:intergenic | 10.0% |
| !! | AATTATATTAATAAGTGATA+AGG | - | tig0020056:95813-95832 | None:intergenic | 10.0% |
| !! | AATTAATCTTCATTAATAAT+TGG | - | tig0020056:96931-96950 | None:intergenic | 10.0% |
| !!! | TAGAATTATGTTCAATATTT+TGG | + | tig0020056:94928-94947 | Msa1378230:intron | 15.0% |
| !!! | AGAATTATGTTCAATATTTT+GGG | + | tig0020056:94929-94948 | Msa1378230:intron | 15.0% |
| !! | AAGCTATATAAATAAATATG+TGG | + | tig0020056:97150-97169 | Msa1378230:intron | 15.0% |
| !!! | AGTTTTCTTATTAATTACTA+TGG | + | tig0020056:97217-97236 | Msa1378230:intron | 15.0% |
| !! | TTTATTGAAAAACAAACATT+AGG | + | tig0020056:97352-97371 | Msa1378230:intron | 15.0% |
| !! | TAAGTATATCAATTATCAAA+AGG | - | tig0020056:97482-97501 | None:intergenic | 15.0% |
| !! | ATAAATAATGAAATGAAAGC+AGG | - | tig0020056:94980-94999 | None:intergenic | 20.0% |
| !! | TATTACAAACAGAATAACAT+TGG | - | tig0020056:95153-95172 | None:intergenic | 20.0% |
| !!! | TCTTTAAAGCATTAAGTATA+TGG | - | tig0020056:95479-95498 | None:intergenic | 20.0% |
| !!! | TTATTTTTGTTTTTGTTGTG+TGG | + | tig0020056:95727-95746 | Msa1378230:intron | 20.0% |
| !!! | ATGACTCAATTTTATGTATT+GGG | - | tig0020056:95947-95966 | None:intergenic | 20.0% |
| !!! | AATGACTCAATTTTATGTAT+TGG | - | tig0020056:95948-95967 | None:intergenic | 20.0% |
| !! | AATTGAGTCATTAATTAAGA+AGG | + | tig0020056:95956-95975 | Msa1378230:intron | 20.0% |
| !! | TTAAATCGGCTAAAAAATTA+AGG | + | tig0020056:96035-96054 | Msa1378230:intron | 20.0% |
| !! | TTAGTAAAAAAAATTGGTTG+TGG | - | tig0020056:96262-96281 | None:intergenic | 20.0% |
| !! | AAAAAATTGTTCGGTAAAAT+GGG | - | tig0020056:96526-96545 | None:intergenic | 20.0% |
| !! | AAAAAAATTGTTCGGTAAAA+TGG | - | tig0020056:96527-96546 | None:intergenic | 20.0% |
| !!! | AAATCAAAGATTCCATTTTA+TGG | - | tig0020056:96853-96872 | None:intergenic | 20.0% |
| !! | TTTACTTTGTCAAAAAATCT+TGG | + | tig0020056:97187-97206 | Msa1378230:intron | 20.0% |
| !! | TTTGAAGTGTGCAAATAATA+TGG | - | tig0020056:94274-94293 | None:intergenic | 25.0% |
| ! | ATGATATCCATGACATTTAT+GGG | + | tig0020056:94344-94363 | Msa1378230:CDS | 25.0% |
| ! | TAAATCAGATGATATAGAGA+CGG | - | tig0020056:94531-94550 | None:intergenic | 25.0% |
| !!! | TTCAATATTTTGGGTTTAGT+TGG | + | tig0020056:94938-94957 | Msa1378230:intron | 25.0% |
| ! | TCCACAAAAATTAACGTAAA+TGG | + | tig0020056:95213-95232 | Msa1378230:intron | 25.0% |
| !! | ACCATTTACGTTAATTTTTG+TGG | - | tig0020056:95217-95236 | None:intergenic | 25.0% |
| ! | AAGAATAAGATATTGATCTC+TGG | - | tig0020056:95347-95366 | None:intergenic | 25.0% |
| ! | TTAAAGATTGAACAGAAAGA+TGG | + | tig0020056:95492-95511 | Msa1378230:intron | 25.0% |
| ! | AGATTGAAATAGTCAACTTA+GGG | + | tig0020056:96008-96027 | Msa1378230:intron | 25.0% |
| ! | GTGTGGTTAGTAAAAAAAAT+TGG | - | tig0020056:96268-96287 | None:intergenic | 25.0% |
| ! | AAAAATTGTTCGGTAAAATG+GGG | - | tig0020056:96525-96544 | None:intergenic | 25.0% |
| !! | AAACACATATTGACATTTTG+AGG | + | tig0020056:96603-96622 | Msa1378230:intron | 25.0% |
| !! | GAAATATCCCAATTTTCTTA+AGG | - | tig0020056:96634-96653 | None:intergenic | 25.0% |
| ! | CCAAGTTTGTAATTAACAAA+GGG | + | tig0020056:96817-96836 | Msa1378230:intron | 25.0% |
| ! | CAAGTTTGTAATTAACAAAG+GGG | + | tig0020056:96818-96837 | Msa1378230:intron | 25.0% |
| !! | AAGATTCCATTTTATGGAAT+TGG | - | tig0020056:96847-96866 | None:intergenic | 25.0% |
| !! | TTTGATTTAATCGTTTGAGT+AGG | + | tig0020056:96865-96884 | Msa1378230:intron | 25.0% |
| ! | AAAGCTAAGAAAAAGAAAGA+TGG | - | tig0020056:97089-97108 | None:intergenic | 25.0% |
| ! | AGATAAGATTAATACCTCTA+GGG | - | tig0020056:97382-97401 | None:intergenic | 25.0% |
| !! | CCAAAGTTCTAATATTGTTT+GGG | - | tig0020056:97428-97447 | None:intergenic | 25.0% |
| !! | ACCAAAGTTCTAATATTGTT+TGG | - | tig0020056:97429-97448 | None:intergenic | 25.0% |
| !!! | CTTCTCACAATTTTTTCTTT+TGG | + | tig0020056:97539-97558 | Msa1378230:CDS | 25.0% |
| ! | ATAAGGAACATGCATATATT+GGG | + | tig0020056:97670-97689 | Msa1378230:CDS | 25.0% |
| ATAATATGGTGCATAATGTC+AGG | - | tig0020056:94260-94279 | None:intergenic | 30.0% | |
| TCATTTGTCTACATATTTGC+AGG | + | tig0020056:94305-94324 | Msa1378230:intron | 30.0% | |
| GATGATATCCATGACATTTA+TGG | + | tig0020056:94343-94362 | Msa1378230:CDS | 30.0% | |
| TGTTCGAATTTGTACTTCAA+GGG | - | tig0020056:94615-94634 | None:intergenic | 30.0% | |
| TTGTTCGAATTTGTACTTCA+AGG | - | tig0020056:94616-94635 | None:intergenic | 30.0% | |
| TCAATCATGATAACAAACAC+AGG | - | tig0020056:94890-94909 | None:intergenic | 30.0% | |
| TATCATGATTGAGAATGACA+AGG | + | tig0020056:94898-94917 | Msa1378230:CDS | 30.0% | |
| TTGATGCAGTGTTAAAACAA+AGG | - | tig0020056:95021-95040 | None:intergenic | 30.0% | |
| !! | GTTTTAACACTGCATCAATA+AGG | + | tig0020056:95023-95042 | Msa1378230:intron | 30.0% |
| ! | ATAACATTGGTTGAACAGAA+AGG | - | tig0020056:95140-95159 | None:intergenic | 30.0% |
| GTCGAAAAAATTGATGCATA+TGG | - | tig0020056:95252-95271 | None:intergenic | 30.0% | |
| ATACGAGTAAATCACTAACA+AGG | - | tig0020056:95607-95626 | None:intergenic | 30.0% | |
| GAGATTGAAATAGTCAACTT+AGG | + | tig0020056:96007-96026 | Msa1378230:intron | 30.0% | |
| !!! | TTTTGGAATGATTTAAGGTG+TGG | - | tig0020056:96226-96245 | None:intergenic | 30.0% |
| !!! | CCTGATTTTGGAATGATTTA+AGG | - | tig0020056:96231-96250 | None:intergenic | 30.0% |
| CCTTAAATCATTCCAAAATC+AGG | + | tig0020056:96228-96247 | Msa1378230:intron | 30.0% | |
| AAAAAATTGGTTGTGGTACA+AGG | - | tig0020056:96255-96274 | None:intergenic | 30.0% | |
| !!! | TTTTTTTACTAACCACACCA+CGG | + | tig0020056:96270-96289 | Msa1378230:intron | 30.0% |
| AAATTTCAATAGACCGAATG+TGG | - | tig0020056:96360-96379 | None:intergenic | 30.0% | |
| AAATGAGATAGTTACTGACA+CGG | - | tig0020056:96390-96409 | None:intergenic | 30.0% | |
| AAGAGTGACACTCATTAATT+CGG | - | tig0020056:96663-96682 | None:intergenic | 30.0% | |
| ! | TATTGGAGGAATTGATTCAA+AGG | - | tig0020056:96695-96714 | None:intergenic | 30.0% |
| AAAAACGCTGAAATTATTGG+AGG | - | tig0020056:96709-96728 | None:intergenic | 30.0% | |
| ! | AGATTCCATTTTGTTCATCT+CGG | - | tig0020056:96795-96814 | None:intergenic | 30.0% |
| GCCAAGTTTGTAATTAACAA+AGG | + | tig0020056:96816-96835 | Msa1378230:intron | 30.0% | |
| CCCTTTGTTAATTACAAACT+TGG | - | tig0020056:96820-96839 | None:intergenic | 30.0% | |
| AAGATGGTGTAGAATTTACA+AGG | - | tig0020056:97073-97092 | None:intergenic | 30.0% | |
| GATAAGATTAATACCTCTAG+GGG | - | tig0020056:97381-97400 | None:intergenic | 30.0% | |
| CAGATAAGATTAATACCTCT+AGG | - | tig0020056:97383-97402 | None:intergenic | 30.0% | |
| !! | AGAGGTATTAATCTTATCTG+AGG | + | tig0020056:97383-97402 | Msa1378230:intron | 30.0% |
| CCCAAACAATATTAGAACTT+TGG | + | tig0020056:97425-97444 | Msa1378230:intron | 30.0% | |
| ATGTCATGTTGTGAGAATTT+AGG | + | tig0020056:97449-97468 | Msa1378230:intron | 30.0% | |
| GATAAGGAACATGCATATAT+TGG | + | tig0020056:97669-97688 | Msa1378230:CDS | 30.0% | |
| TTACCTTTCCCTCTTTCATT+TGG | + | tig0020056:94125-94144 | Msa1378230:intron | 35.0% | |
| ACAACATACCCATTGAACTT+GGG | - | tig0020056:94475-94494 | None:intergenic | 35.0% | |
| TACAACATACCCATTGAACT+TGG | - | tig0020056:94476-94495 | None:intergenic | 35.0% | |
| GGTATGTTGTAGCTCAATAA+TGG | + | tig0020056:94485-94504 | Msa1378230:intron | 35.0% | |
| GTTCGAATTTGTACTTCAAG+GGG | - | tig0020056:94614-94633 | None:intergenic | 35.0% | |
| ATGCATTTGCAAGCAGAATT+TGG | + | tig0020056:94641-94660 | Msa1378230:CDS | 35.0% | |
| TTCTTCATATGTGCTTCAGA+TGG | + | tig0020056:94706-94725 | Msa1378230:CDS | 35.0% | |
| AGTAAAGATTCCACTTCTGT+TGG | + | tig0020056:94773-94792 | Msa1378230:CDS | 35.0% | |
| CAATCAGGCTTGTAAGAATA+TGG | - | tig0020056:94854-94873 | None:intergenic | 35.0% | |
| ! | AATAAGGAACACGCATTGAT+TGG | + | tig0020056:95039-95058 | Msa1378230:intron | 35.0% |
| !! | ATAAGGAACACGCATTGATT+GGG | + | tig0020056:95040-95059 | Msa1378230:intron | 35.0% |
| GGTATGAAATTTACTAGCAG+AGG | + | tig0020056:95545-95564 | Msa1378230:intron | 35.0% | |
| ! | TACTTCGATTTTGTTCCGAA+TGG | - | tig0020056:95777-95796 | None:intergenic | 35.0% |
| CAACTTAGGGTGTGTTAAAT+CGG | + | tig0020056:96021-96040 | Msa1378230:intron | 35.0% | |
| ! | ACAAGAAAGTTGCCTCATTT+TGG | - | tig0020056:96155-96174 | None:intergenic | 35.0% |
| TGTGATAAAGCAAAAAGACG+CGG | + | tig0020056:96175-96194 | Msa1378230:intron | 35.0% | |
| TGGAAGGATTTATGCAGTTT+AGG | - | tig0020056:96326-96345 | None:intergenic | 35.0% | |
| !! | GTGGGATTTGTTATGGAAAA+GGG | - | tig0020056:96432-96451 | None:intergenic | 35.0% |
| !! | ATTAGTGGTGGGATTTGTTA+TGG | - | tig0020056:96439-96458 | None:intergenic | 35.0% |
| ! | CCAAAAATATATGGTGGGAT+AGG | - | tig0020056:96491-96510 | None:intergenic | 35.0% |
| ! | CCTATCCCACCATATATTTT+TGG | + | tig0020056:96488-96507 | Msa1378230:intron | 35.0% |
| GTTTGTCGGCCAAAAATATA+TGG | - | tig0020056:96500-96519 | None:intergenic | 35.0% | |
| CAGGGGAGAAAAAAATTGTT+CGG | - | tig0020056:96535-96554 | None:intergenic | 35.0% | |
| AACGGAATTCTATATGGAGT+GGG | - | tig0020056:96562-96581 | None:intergenic | 35.0% | |
| TGCTTCAACGGAATTCTATA+TGG | - | tig0020056:96568-96587 | None:intergenic | 35.0% | |
| AGAAGAGTGAAATGCTTCAA+CGG | - | tig0020056:96580-96599 | None:intergenic | 35.0% | |
| AGGAACGACCTTAAGAAAAT+TGG | + | tig0020056:96623-96642 | Msa1378230:intron | 35.0% | |
| GGAACGACCTTAAGAAAATT+GGG | + | tig0020056:96624-96643 | Msa1378230:intron | 35.0% | |
| CGGAAAAACGCTGAAATTAT+TGG | - | tig0020056:96712-96731 | None:intergenic | 35.0% | |
| ! | GATTCCATTTTGTTCATCTC+GGG | - | tig0020056:96794-96813 | None:intergenic | 35.0% |
| GATCGAGTAAGTTAAAATGC+AGG | + | tig0020056:96905-96924 | Msa1378230:intron | 35.0% | |
| AATTCCTGCAGTTCAATTTG+TGG | + | tig0020056:96947-96966 | Msa1378230:intron | 35.0% | |
| CCTTATGTTAAAGTGTGTGA+GGG | - | tig0020056:97004-97023 | None:intergenic | 35.0% | |
| TCCTTATGTTAAAGTGTGTG+AGG | - | tig0020056:97005-97024 | None:intergenic | 35.0% | |
| ! | GCAGTGATTTTCACACTTAA+AGG | - | tig0020056:97646-97665 | None:intergenic | 35.0% |
| ! | TGAAAATCACTGCATCGATA+AGG | + | tig0020056:97653-97672 | Msa1378230:CDS | 35.0% |
| !!! | GTAGTGTTGTTTTTGTTAGC+AGG | - | tig0020056:97742-97761 | None:intergenic | 35.0% |
| CAAAAACAACACTACCTTTC+TGG | + | tig0020056:97747-97766 | Msa1378230:CDS | 35.0% | |
| ! | TAACATTGGTTGAACCAGAA+AGG | - | tig0020056:97764-97783 | None:intergenic | 35.0% |
| AAGCCTTAGAAGTTGTTCAC+CGG | + | tig0020056:94404-94423 | Msa1378230:CDS | 40.0% | |
| TAACCGGTGAACAACTTCTA+AGG | - | tig0020056:94410-94429 | None:intergenic | 40.0% | |
| ! | TAGAAGTTGTTCACCGGTTA+TGG | + | tig0020056:94410-94429 | Msa1378230:CDS | 40.0% |
| ATACATTGCCCCAAGTTCAA+TGG | + | tig0020056:94463-94482 | Msa1378230:CDS | 40.0% | |
| TACATTGCCCCAAGTTCAAT+GGG | + | tig0020056:94464-94483 | Msa1378230:CDS | 40.0% | |
| CAACATACCCATTGAACTTG+GGG | - | tig0020056:94474-94493 | None:intergenic | 40.0% | |
| TTATCAATCTCTGCACACTG+TGG | + | tig0020056:94568-94587 | Msa1378230:CDS | 40.0% | |
| AATTTGGATTCGCTGCTCAT+TGG | + | tig0020056:94657-94676 | Msa1378230:CDS | 40.0% | |
| ATCGACAAATCCAACAGAAG+TGG | - | tig0020056:94786-94805 | None:intergenic | 40.0% | |
| GACAGTTATCAGCATGAGAA+GGG | - | tig0020056:94832-94851 | None:intergenic | 40.0% | |
| AGTTCGAAGCTATCATCATC+AGG | - | tig0020056:95075-95094 | None:intergenic | 40.0% | |
| ! | CTTGCTTGCTTCTGTTACTT+CGG | + | tig0020056:95093-95112 | Msa1378230:intron | 40.0% |
| TGAACAGAAAGATGGTGCAT+TGG | + | tig0020056:95524-95543 | Msa1378230:intron | 40.0% | |
| ! | AGGAAGACATGCTTGCTAAA+TGG | + | tig0020056:95565-95584 | Msa1378230:intron | 40.0% |
| !! | TTGCCTCATTTTGGAGATAG+GGG | - | tig0020056:96146-96165 | None:intergenic | 40.0% |
| !! | GTTGCCTCATTTTGGAGATA+GGG | - | tig0020056:96147-96166 | None:intergenic | 40.0% |
| !! | AGTTGCCTCATTTTGGAGAT+AGG | - | tig0020056:96148-96167 | None:intergenic | 40.0% |
| TAAAGCAAAAAGACGCGGAA+AGG | + | tig0020056:96180-96199 | Msa1378230:intron | 40.0% | |
| !!! | GGAAAGGTGAGGTTTTGAAT+GGG | + | tig0020056:96196-96215 | Msa1378230:intron | 40.0% |
| GGATTTATGCAGTTTAGGTG+AGG | - | tig0020056:96321-96340 | None:intergenic | 40.0% | |
| CACCATAAAGAAGCCACATT+CGG | + | tig0020056:96344-96363 | Msa1378230:intron | 40.0% | |
| !! | GTTATGGAAAAGGGTGTTGA+TGG | - | tig0020056:96423-96442 | None:intergenic | 40.0% |
| !! | GGTGGGATTTGTTATGGAAA+AGG | - | tig0020056:96433-96452 | None:intergenic | 40.0% |
| TAGTGGAGGTTATTAGTGGT+GGG | - | tig0020056:96450-96469 | None:intergenic | 40.0% | |
| TTAGTGGAGGTTATTAGTGG+TGG | - | tig0020056:96451-96470 | None:intergenic | 40.0% | |
| AGCTTAGTGGAGGTTATTAG+TGG | - | tig0020056:96454-96473 | None:intergenic | 40.0% | |
| ! | AAGGGTTTAAAGCTTAGTGG+AGG | - | tig0020056:96464-96483 | None:intergenic | 40.0% |
| ! | GTGAAGGGTTTAAAGCTTAG+TGG | - | tig0020056:96467-96486 | None:intergenic | 40.0% |
| GTCGGCCAAAAATATATGGT+GGG | - | tig0020056:96496-96515 | None:intergenic | 40.0% | |
| TGTCGGCCAAAAATATATGG+TGG | - | tig0020056:96497-96516 | None:intergenic | 40.0% | |
| GGTAAAATGGGGATGTTTGT+CGG | - | tig0020056:96514-96533 | None:intergenic | 40.0% | |
| CAACGGAATTCTATATGGAG+TGG | - | tig0020056:96563-96582 | None:intergenic | 40.0% | |
| !! | ACACTCATTAATTCGGTGCT+GGG | - | tig0020056:96656-96675 | None:intergenic | 40.0% |
| TTCCAGTGAATCCTAATCCA+AGG | - | tig0020056:96770-96789 | None:intergenic | 40.0% | |
| GGGACACCAATTCCATAAAA+TGG | + | tig0020056:96838-96857 | Msa1378230:intron | 40.0% | |
| TCTTCCACAAATTGAACTGC+AGG | - | tig0020056:96954-96973 | None:intergenic | 40.0% | |
| CCCTCACACACTTTAACATA+AGG | + | tig0020056:97001-97020 | Msa1378230:intron | 40.0% | |
| GGTGTAGAATTTACAAGGAG+AGG | - | tig0020056:97068-97087 | None:intergenic | 40.0% | |
| ! | TCATATAGTCTTACCCAGTG+TGG | - | tig0020056:97128-97147 | None:intergenic | 40.0% |
| AAACATTAGGTTTCCCCTAG+AGG | + | tig0020056:97365-97384 | Msa1378230:intron | 40.0% | |
| TACAAGCCAGTATTTGTCCA+AGG | + | tig0020056:97580-97599 | Msa1378230:CDS | 40.0% | |
| CAGCCAAATGAAAGAGGGAA+AGG | - | tig0020056:94131-94150 | None:intergenic | 45.0% | |
| CTTTCCCTCTTTCATTTGGC+TGG | + | tig0020056:94129-94148 | Msa1378230:intron | 45.0% | |
| GTGACCAGCCAAATGAAAGA+GGG | - | tig0020056:94136-94155 | None:intergenic | 45.0% | |
| AGTGACCAGCCAAATGAAAG+AGG | - | tig0020056:94137-94156 | None:intergenic | 45.0% | |
| GCTGCGCTTGATTGTTGATA+AGG | + | tig0020056:94366-94385 | Msa1378230:CDS | 45.0% | |
| ! | GCGCTTGATTGTTGATAAGG+AGG | + | tig0020056:94369-94388 | Msa1378230:CDS | 45.0% |
| ATGTGCTTCAGATGGTTGAG+TGG | + | tig0020056:94714-94733 | Msa1378230:CDS | 45.0% | |
| TGTGCTTCAGATGGTTGAGT+GGG | + | tig0020056:94715-94734 | Msa1378230:CDS | 45.0% | |
| GGACAGTTATCAGCATGAGA+AGG | - | tig0020056:94833-94852 | None:intergenic | 45.0% | |
| ! | AATGGAGTACCTACACAACG+AGG | - | tig0020056:95759-95778 | None:intergenic | 45.0% |
| CGTTGTGTAGGTACTCCATT+CGG | + | tig0020056:95759-95778 | Msa1378230:intron | 45.0% | |
| TAAAAACCGAGCTGAACCAC+TGG | - | tig0020056:96091-96110 | None:intergenic | 45.0% | |
| !! | TCATTTTGGAGATAGGGGAG+TGG | - | tig0020056:96141-96160 | None:intergenic | 45.0% |
| ACTCCCCTATCTCCAAAATG+AGG | + | tig0020056:96140-96159 | Msa1378230:intron | 45.0% | |
| !!! | CGGAAAGGTGAGGTTTTGAA+TGG | + | tig0020056:96195-96214 | Msa1378230:intron | 45.0% |
| ! | GTGGTACAAGGACCTGATTT+TGG | - | tig0020056:96243-96262 | None:intergenic | 45.0% |
| GAACCAATCCAACCTCTTAC+CGG | + | tig0020056:96292-96311 | Msa1378230:intron | 45.0% | |
| ! | TGTGGCTTCTTTATGGTGGA+AGG | - | tig0020056:96342-96361 | None:intergenic | 45.0% |
| CGAATGTGGCTTCTTTATGG+TGG | - | tig0020056:96346-96365 | None:intergenic | 45.0% | |
| GACCGAATGTGGCTTCTTTA+TGG | - | tig0020056:96349-96368 | None:intergenic | 45.0% | |
| ! | TATGGTGGGATAGGAGTGAA+GGG | - | tig0020056:96482-96501 | None:intergenic | 45.0% |
| ! | ATATGGTGGGATAGGAGTGA+AGG | - | tig0020056:96483-96502 | None:intergenic | 45.0% |
| !! | GACACTCATTAATTCGGTGC+TGG | - | tig0020056:96657-96676 | None:intergenic | 45.0% |
| ! | AATTGATTCAAAGGCCCTGG+TGG | - | tig0020056:96686-96705 | None:intergenic | 45.0% |
| ! | AGGAATTGATTCAAAGGCCC+TGG | - | tig0020056:96689-96708 | None:intergenic | 45.0% |
| !! | GATCTGATGGTGGAGGTTAT+CGG | - | tig0020056:96732-96751 | None:intergenic | 45.0% |
| !! | TACTTTGGATCTGATGGTGG+AGG | - | tig0020056:96739-96758 | None:intergenic | 45.0% |
| GTCTACTTTGGATCTGATGG+TGG | - | tig0020056:96742-96761 | None:intergenic | 45.0% | |
| GACGTCTACTTTGGATCTGA+TGG | - | tig0020056:96745-96764 | None:intergenic | 45.0% | |
| ! | GTCCTTGGATTAGGATTCAC+TGG | + | tig0020056:96765-96784 | Msa1378230:intron | 45.0% |
| GAAGCCCGAGATGAACAAAA+TGG | + | tig0020056:96787-96806 | Msa1378230:intron | 45.0% | |
| ! | ACTCATCCTTTTCTCCACAC+TGG | + | tig0020056:97111-97130 | Msa1378230:intron | 45.0% |
| ! | CTCATCCTTTTCTCCACACT+GGG | + | tig0020056:97112-97131 | Msa1378230:intron | 45.0% |
| TCTTACCCAGTGTGGAGAAA+AGG | - | tig0020056:97120-97139 | None:intergenic | 45.0% | |
| ! | TTTGGTTCATTCGTGTGCAG+AGG | + | tig0020056:97557-97576 | Msa1378230:CDS | 45.0% |
| !! | CACTTAAAGGTGTCTCGATG+TGG | - | tig0020056:97633-97652 | None:intergenic | 45.0% |
| ! | ATTGGGTCTTGTCAGCCTAA+TGG | + | tig0020056:97687-97706 | Msa1378230:CDS | 45.0% |
| CAAGCAAGATCAACGCCATT+AGG | - | tig0020056:97705-97724 | None:intergenic | 45.0% | |
| !!! | ATATTTTATTATTGAAATTA+AGG | - | tig0020056:95380-95399 | None:intergenic | 5.0% |
| AGCGCAGCCCATAAATGTCA+TGG | - | tig0020056:94354-94373 | None:intergenic | 50.0% | |
| ! | TGTTCACCGGTTATGGTCTG+AGG | + | tig0020056:94417-94436 | Msa1378230:CDS | 50.0% |
| CATGCACCTCAGACCATAAC+CGG | - | tig0020056:94426-94445 | None:intergenic | 50.0% | |
| ! | GGTTATGGTCTGAGGTGCAT+GGG | + | tig0020056:94425-94444 | Msa1378230:CDS | 50.0% |
| ATCTCTGCACACTGTGGTGA+TGG | + | tig0020056:94574-94593 | Msa1378230:CDS | 50.0% | |
| TCTCTGCACACTGTGGTGAT+GGG | + | tig0020056:94575-94594 | Msa1378230:CDS | 50.0% | |
| TTGGATTCGCTGCTCATTGG+AGG | + | tig0020056:94660-94679 | Msa1378230:CDS | 50.0% | |
| TGAGAAGGGAACTTGCAAGG+TGG | - | tig0020056:94818-94837 | None:intergenic | 50.0% | |
| GCATGAGAAGGGAACTTGCA+AGG | - | tig0020056:94821-94840 | None:intergenic | 50.0% | |
| TTACAAGCCTGATTGCGAGC+AGG | + | tig0020056:94859-94878 | Msa1378230:CDS | 50.0% | |
| TGGCTTCTACCTCGTTGTGT+AGG | + | tig0020056:95747-95766 | Msa1378230:intron | 50.0% | |
| ! | ACCACTGGTCAGATAGTGGT+TGG | - | tig0020056:96076-96095 | None:intergenic | 50.0% |
| CTGAACCACTGGTCAGATAG+TGG | - | tig0020056:96080-96099 | None:intergenic | 50.0% | |
| ATCTGACCAGTGGTTCAGCT+CGG | + | tig0020056:96082-96101 | Msa1378230:intron | 50.0% | |
| CAAAAAGACGCGGAAAGGTG+AGG | + | tig0020056:96185-96204 | Msa1378230:intron | 50.0% | |
| !! | AAGAGGTTGGATTGGTTCCG+TGG | - | tig0020056:96290-96309 | None:intergenic | 50.0% |
| TGACCGGTAAGAGGTTGGAT+TGG | - | tig0020056:96298-96317 | None:intergenic | 50.0% | |
| TGCAGTTTAGGTGAGGTGAC+CGG | - | tig0020056:96314-96333 | None:intergenic | 50.0% | |
| !! | GGAAAAGGGTGTTGATGGCA+AGG | - | tig0020056:96418-96437 | None:intergenic | 50.0% |
| !! | TATATGGAGTGGGCTGTCAG+GGG | - | tig0020056:96552-96571 | None:intergenic | 50.0% |
| !! | CTATATGGAGTGGGCTGTCA+GGG | - | tig0020056:96553-96572 | None:intergenic | 50.0% |
| !! | TCTATATGGAGTGGGCTGTC+AGG | - | tig0020056:96554-96573 | None:intergenic | 50.0% |
| ! | ATGAGTGTCACTCTTCCACC+AGG | + | tig0020056:96668-96687 | Msa1378230:intron | 50.0% |
| ! | TGAGTGTCACTCTTCCACCA+GGG | + | tig0020056:96669-96688 | Msa1378230:intron | 50.0% |
| TCCAAAGTAGACGTCGTCCT+TGG | + | tig0020056:96750-96769 | Msa1378230:intron | 50.0% | |
| TCCAAGGACGACGTCTACTT+TGG | - | tig0020056:96754-96773 | None:intergenic | 50.0% | |
| GTAGACGTCGTCCTTGGATT+AGG | + | tig0020056:96756-96775 | Msa1378230:intron | 50.0% | |
| GCTGAGCCTTGGACAAATAC+TGG | - | tig0020056:97589-97608 | None:intergenic | 50.0% | |
| ! | AAGGTGTCTCGATGTGGACA+CGG | - | tig0020056:97627-97646 | None:intergenic | 50.0% |
| ! | CGGTTATGGTCTGAGGTGCA+TGG | + | tig0020056:94424-94443 | Msa1378230:CDS | 55.0% |
| !! | CACACTGTGGTGATGGGTGA+AGG | + | tig0020056:94581-94600 | Msa1378230:CDS | 55.0% |
| !! | TGTGGTGATGGGTGAAGGCA+AGG | + | tig0020056:94586-94605 | Msa1378230:CDS | 55.0% |
| ! | CGCTGCTCATTGGAGGTACA+AGG | + | tig0020056:94667-94686 | Msa1378230:CDS | 55.0% |
| ! | AGATGGTTGAGTGGGCTCGA+TGG | + | tig0020056:94723-94742 | Msa1378230:CDS | 55.0% |
| ! | GATGGTTGAGTGGGCTCGAT+GGG | + | tig0020056:94724-94743 | Msa1378230:CDS | 55.0% |
| ACTCATTGCTTCGCACTGCC+AGG | - | tig0020056:94756-94775 | None:intergenic | 55.0% | |
| AAGCCTGATTGCGAGCAGGA+TGG | + | tig0020056:94863-94882 | Msa1378230:CDS | 55.0% | |
| ! | GATAGTGGTTGGCGTTGGAG+TGG | - | tig0020056:96065-96084 | None:intergenic | 55.0% |
| ! | GGTCAGATAGTGGTTGGCGT+TGG | - | tig0020056:96070-96089 | None:intergenic | 55.0% |
| GCCAACCACTATCTGACCAG+TGG | + | tig0020056:96072-96091 | Msa1378230:intron | 55.0% | |
| !! | GTTGGATTGGTTCCGTGGTG+TGG | - | tig0020056:96285-96304 | None:intergenic | 55.0% |
| TGAGGTGACCGGTAAGAGGT+TGG | - | tig0020056:96303-96322 | None:intergenic | 55.0% | |
| TAGGTGAGGTGACCGGTAAG+AGG | - | tig0020056:96307-96326 | None:intergenic | 55.0% | |
| TTCCATGTTGCGCTGAGCCT+TGG | - | tig0020056:97600-97619 | None:intergenic | 55.0% | |
| GGTCCATCCTGCTCGCAATC+AGG | - | tig0020056:94869-94888 | None:intergenic | 60.0% | |
| CCTGAACCGAACCATGCCCA+CGG | + | tig0020056:96112-96131 | Msa1378230:intron | 60.0% | |
| GTCCAAGGCTCAGCGCAACA+TGG | + | tig0020056:97595-97614 | Msa1378230:CDS | 60.0% | |
| !! | GGGCTCGATGGGTTGTCACC+TGG | + | tig0020056:94735-94754 | Msa1378230:CDS | 65.0% |
| !! | CCGTGGGCATGGTTCGGTTC+AGG | - | tig0020056:96115-96134 | None:intergenic | 65.0% |
| TGGTCGCCGTGGGCATGGTT+CGG | - | tig0020056:96121-96140 | None:intergenic | 65.0% | |
| GATAGGGGAGTGGTCGCCGT+GGG | - | tig0020056:96131-96150 | None:intergenic | 65.0% | |
| AGATAGGGGAGTGGTCGCCG+TGG | - | tig0020056:96132-96151 | None:intergenic | 65.0% | |
| GGGAGTGGTCGCCGTGGGCA+TGG | - | tig0020056:96126-96145 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020056 | gene | 94104 | 97795 | 94104 | ID=Msa1378230;Name=Msa1378230 |
| tig0020056 | mRNA | 94104 | 97795 | 94104 | ID=Msa1378230-mRNA-1;Parent=Msa1378230;Name=Msa1378230-mRNA-1;_AED=0.28;_eAED=0.30;_QI=0|0.66|0.5|1|0.33|0.5|4|0|269 |
| tig0020056 | exon | 94104 | 94117 | 94104 | ID=Msa1378230-mRNA-1:exon:5967;Parent=Msa1378230-mRNA-1 |
| tig0020056 | exon | 94327 | 94485 | 94327 | ID=Msa1378230-mRNA-1:exon:5968;Parent=Msa1378230-mRNA-1 |
| tig0020056 | exon | 94568 | 94919 | 94568 | ID=Msa1378230-mRNA-1:exon:5969;Parent=Msa1378230-mRNA-1 |
| tig0020056 | exon | 97511 | 97795 | 97511 | ID=Msa1378230-mRNA-1:exon:5970;Parent=Msa1378230-mRNA-1 |
| tig0020056 | CDS | 94104 | 94117 | 94104 | ID=Msa1378230-mRNA-1:cds;Parent=Msa1378230-mRNA-1 |
| tig0020056 | CDS | 94327 | 94485 | 94327 | ID=Msa1378230-mRNA-1:cds;Parent=Msa1378230-mRNA-1 |
| tig0020056 | CDS | 94568 | 94919 | 94568 | ID=Msa1378230-mRNA-1:cds;Parent=Msa1378230-mRNA-1 |
| tig0020056 | CDS | 97511 | 97795 | 97511 | ID=Msa1378230-mRNA-1:cds;Parent=Msa1378230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
