AlfalfaGEDB | Msa1378230

M. sativa cultivar zhongmu-4 / Msa1378230

KEGG: K00951
GO: GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008728 GO:0008893 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009605 GO:0009611 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010150 GO:0015969 GO:0015970 GO:0015979 GO:0016020 GO:0016740 GO:0016772 GO:0016778 GO:0016787 GO:0016788 GO:0016794 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0030312 GO:0031667 GO:0032501 GO:0032502 GO:0033865 GO:0033866 GO:0033875 GO:0033993 GO:0034030 GO:0034032 GO:0034033 GO:0034035 GO:0034036 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0042578 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0090407 GO:0090693 GO:0097305 GO:0099402 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700
PFAM: PF04607.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1378230	XP_003627298.1	94.944	178	9	0	1	178	449	626	9.65e-121	371

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1378230	sp\|Q9M5P5\|RSH3L_ARATH	73.596	178	44	1	1	178	438	612	2.83e-90	285

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1378230	Q4VYD1	94.944	178	9	0	1	178	449	626	4.61e-121	371

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0029850	Msa1378230	0.825014	5.906027e-54	-8.615850e-47
Msa0051200	Msa1378230	0.824035	1.003817e-53	-8.615850e-47
Msa0051460	Msa1378230	0.834075	3.695405e-56	-8.615850e-47
Msa0052030	Msa1378230	0.801039	1.086871e-48	-8.615850e-47
Msa0055240	Msa1378230	0.813466	2.524050e-51	-8.615850e-47
Msa0057520	Msa1378230	0.803817	2.909309e-49	-8.615850e-47
Msa0071550	Msa1378230	0.812841	3.460788e-51	-8.615850e-47
Msa0077180	Msa1378230	0.812751	3.620386e-51	-8.615850e-47
Msa0085720	Msa1378230	0.836498	9.033278e-57	-8.615850e-47
Msa0101840	Msa1378230	0.803977	2.694498e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1378230	MtrunA17_Chr8g0344131	94.944	178	9	0	1	178	449	626	8.87e-125	371
Msa1378230	MtrunA17_Chr5g0395711	47.368	114	51	1	2	106	459	572	1.32e-25	105
Msa1378230	MtrunA17_Chr4g0069291	36.036	111	57	2	2	98	323	433	4.55e-16	77.8
Msa1378230	MtrunA17_Chr7g0269591	32.026	153	87	3	3	140	386	536	2.53e-15	75.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1378230	AT1G54130.1	73.034	178	45	1	1	178	441	615	6.73e-91	284
Msa1378230	AT3G14050.1	77.401	177	40	0	2	178	438	614	7.52e-90	281
Msa1378230	AT4G02260.4	33.529	170	78	4	4	139	389	557	2.03e-15	76.3
Msa1378230	AT4G02260.3	33.529	170	78	4	4	139	389	557	2.21e-15	76.3
Msa1378230	AT4G02260.2	41.818	110	49	2	4	98	389	498	2.41e-15	76.3
Msa1378230	AT3G17470.3	36.036	111	57	2	2	98	320	430	6.32e-14	71.6
Msa1378230	AT4G02260.1	41.441	111	49	3	4	98	389	499	8.09e-14	71.6
Msa1378230	AT3G17470.2	36.036	111	57	2	2	98	335	445	8.88e-14	71.2
Msa1378230	AT3G17470.1	36.036	111	57	2	2	98	320	430	1.04e-13	71.2

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Find 62 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCCTGATTGCGAGCAGGA+TGG	0.626790	tig0020056:+94863	Msa1378230:CDS
AAGCCTTAGAAGTTGTTCAC+CGG	0.583932	tig0020056:+94404	Msa1378230:CDS
AAGGTGTCTCGATGTGGACA+CGG	0.587602	tig0020056:-97624	None:intergenic
AATTTGGATTCGCTGCTCAT+TGG	0.445751	tig0020056:+94657	Msa1378230:CDS
ACAACATACCCATTGAACTT+GGG	0.535483	tig0020056:-94472	None:intergenic
AGATGGTTGAGTGGGCTCGA+TGG	0.537950	tig0020056:+94723	Msa1378230:CDS
AGCGCAGCCCATAAATGTCA+TGG	0.564123	tig0020056:-94351	None:intergenic
AGTAAAGATTCCACTTCTGT+TGG	0.443308	tig0020056:+94773	Msa1378230:CDS
ATAAGGAACATGCATATATT+GGG	0.436620	tig0020056:+97670	Msa1378230:CDS
ATACATTGCCCCAAGTTCAA+TGG	0.454579	tig0020056:+94463	Msa1378230:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAATATGGTGCATAATGTC+AGG	-	tig0020056:94260-94279	None:intergenic	30.0%
TCATTTGTCTACATATTTGC+AGG	+	tig0020056:94305-94324	Msa1378230:intron	30.0%
GATGATATCCATGACATTTA+TGG	+	tig0020056:94343-94362	Msa1378230:CDS	30.0%
TGTTCGAATTTGTACTTCAA+GGG	-	tig0020056:94615-94634	None:intergenic	30.0%
TTGTTCGAATTTGTACTTCA+AGG	-	tig0020056:94616-94635	None:intergenic	30.0%
TCAATCATGATAACAAACAC+AGG	-	tig0020056:94890-94909	None:intergenic	30.0%
TATCATGATTGAGAATGACA+AGG	+	tig0020056:94898-94917	Msa1378230:CDS	30.0%
TTGATGCAGTGTTAAAACAA+AGG	-	tig0020056:95021-95040	None:intergenic	30.0%
GTCGAAAAAATTGATGCATA+TGG	-	tig0020056:95252-95271	None:intergenic	30.0%
ATACGAGTAAATCACTAACA+AGG	-	tig0020056:95607-95626	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0020056	gene	94104	97795	94104	ID=Msa1378230;Name=Msa1378230
tig0020056	mRNA	94104	97795	94104	ID=Msa1378230-mRNA-1;Parent=Msa1378230;Name=Msa1378230-mRNA-1;_AED=0.28;_eAED=0.30;_QI=0\|0.66\|0.5\|1\|0.33\|0.5\|4\|0\|269
tig0020056	exon	94104	94117	94104	ID=Msa1378230-mRNA-1:exon:5967;Parent=Msa1378230-mRNA-1
tig0020056	exon	94327	94485	94327	ID=Msa1378230-mRNA-1:exon:5968;Parent=Msa1378230-mRNA-1
tig0020056	exon	94568	94919	94568	ID=Msa1378230-mRNA-1:exon:5969;Parent=Msa1378230-mRNA-1
tig0020056	exon	97511	97795	97511	ID=Msa1378230-mRNA-1:exon:5970;Parent=Msa1378230-mRNA-1
tig0020056	CDS	94104	94117	94104	ID=Msa1378230-mRNA-1:cds;Parent=Msa1378230-mRNA-1
tig0020056	CDS	94327	94485	94327	ID=Msa1378230-mRNA-1:cds;Parent=Msa1378230-mRNA-1
tig0020056	CDS	94568	94919	94568	ID=Msa1378230-mRNA-1:cds;Parent=Msa1378230-mRNA-1
tig0020056	CDS	97511	97795	97511	ID=Msa1378230-mRNA-1:cds;Parent=Msa1378230-mRNA-1

Gene Sequence

>Msa1378230

TGCAAAATATTAAAGAAAAAACTAAGCATAGATGATATCCATGACATTTATGGGCTGCGCTTGATTGTTGATAAGGAGGAAGATTGTTACAAAGCCTTAGAAGTTGTTCACCGGTTATGGTCTGAGGTGCATGGGAAACTGAAAGATTACATACATTGCCCCAAGTTCAATGGTTATCAATCTCTGCACACTGTGGTGATGGGTGAAGGCAAGGTTCCCCTTGAAGTACAAATTCGAACAAAAGATATGCATTTGCAAGCAGAATTTGGATTCGCTGCTCATTGGAGGTACAAGGAAGATCATTGTCAACTTTCTTCATATGTGCTTCAGATGGTTGAGTGGGCTCGATGGGTTGTCACCTGGCAGTGCGAAGCAATGAGTAAAGATTCCACTTCTGTTGGATTTGTCGATTCAATCAAGCCACCTTGCAAGTTCCCTTCTCATGCTGATAACTGTCCATATTCTTACAAGCCTGATTGCGAGCAGGATGGACCTGTGTTTGTTATCATGATTGAGAATGACAAGTTTAGTTTAATGTGCAATGAAGTGTTCTCTTCTCACAATTTTTTCTTTTGGTTCATTCGTGTGCAGAGGTACAAGCCAGTATTTGTCCAAGGCTCAGCGCAACATGGAATAAGCCGTGTCCACATCGAGACACCTTTAAGTGTGAAAATCACTGCATCGATAAGGAACATGCATATATTGGGTCTTGTCAGCCTAATGGCGTTGATCTTGCTTGCTTCTGTTACTTCGCCTGCTAACAAAAACAACACTACCTTTCTGGTTCAACCAATGTTATTCCGTTTATAA

Protein sequence

>Msa1378230

CKILKKKLSIDDIHDIYGLRLIVDKEEDCYKALEVVHRLWSEVHGKLKDYIHCPKFNGYQSLHTVVMGEGKVPLEVQIRTKDMHLQAEFGFAAHWRYKEDHCQLSSYVLQMVEWARWVVTWQCEAMSKDSTSVGFVDSIKPPCKFPSHADNCPYSYKPDCEQDGPVFVIMIENDKFSLMCNEVFSSHNFFFWFIRVQRYKPVFVQGSAQHGISRVHIETPLSVKITASIRNMHILGLVSLMALILLASVTSPANKNNTTFLVQPMLFRL*