AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1459950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459950 MtrunA17_Chr2g0285851 88.770 374 14 1 15 360 1 374 0.0 677
Msa1459950 MtrunA17_Chr3g0138981 33.123 317 164 6 56 343 7 304 7.20e-56 186
Msa1459950 MtrunA17_Chr4g0063531 29.720 286 160 8 58 312 59 334 3.09e-31 122
Msa1459950 MtrunA17_Chr8g0378511 25.305 328 201 9 63 356 74 391 6.33e-26 108
Msa1459950 MtrunA17_Chr3g0115401 25.581 344 158 12 66 316 43 381 3.91e-22 97.4
Msa1459950 MtrunA17_Chr2g0278921 26.000 350 152 13 66 316 43 384 6.71e-21 94.0
Msa1459950 MtrunA17_Chr8g0348991 27.928 333 193 14 65 362 24 344 9.15e-21 92.4
Msa1459950 MtrunA17_Chr8g0377241 26.974 304 168 10 59 320 34 325 5.56e-19 87.4
Msa1459950 MtrunA17_Chr3g0129221 26.667 285 170 8 66 324 9 280 5.76e-17 81.3
Msa1459950 MtrunA17_Chr3g0122681 25.260 289 174 8 63 320 32 309 4.43e-16 79.0
Msa1459950 MtrunA17_Chr2g0326541 25.407 307 190 8 64 340 18 315 1.01e-14 74.7
Msa1459950 MtrunA17_Chr6g0459491 24.000 300 195 10 87 364 104 392 7.66e-13 69.3
Msa1459950 MtrunA17_Chr7g0243481 32.192 146 93 5 142 285 165 306 5.68e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459950 AT1G30090.1 66.400 375 97 2 15 360 1 375 0.0 516
Msa1459950 AT2G24540.1 36.228 334 177 7 49 351 11 339 2.23e-67 217
Msa1459950 AT1G55270.1 28.929 280 164 7 63 314 75 347 1.72e-29 118
Msa1459950 AT1G22040.1 28.280 343 149 14 66 316 43 380 1.14e-23 102
Msa1459950 AT1G67480.3 28.720 289 169 6 56 314 29 310 2.83e-23 100
Msa1459950 AT1G67480.1 28.720 289 169 6 56 314 29 310 2.83e-23 100
Msa1459950 AT1G67480.2 28.720 289 169 6 56 314 29 310 2.83e-23 100
Msa1459950 AT1G55270.2 29.596 223 149 6 90 311 3 218 5.03e-22 95.5
Msa1459950 AT5G60570.2 26.280 293 172 8 59 318 39 320 3.05e-15 77.0
Msa1459950 AT5G60570.1 26.280 293 172 8 59 318 39 320 3.05e-15 77.0
Msa1459950 AT5G60570.3 26.280 293 172 8 59 318 39 320 3.05e-15 77.0
Msa1459950 AT1G27420.1 23.529 306 158 8 65 343 9 265 3.14e-15 76.6
Msa1459950 AT2G21950.1 27.243 301 170 13 66 330 20 307 2.11e-13 71.2
Msa1459950 AT3G63220.3 26.056 284 157 11 66 314 11 276 2.87e-12 67.8
Msa1459950 AT3G63220.2 26.056 284 157 11 66 314 11 276 2.87e-12 67.8
Msa1459950 AT3G63220.1 26.056 284 157 11 66 314 4 269 3.20e-12 67.4
Msa1459950 AT2G44130.1 27.143 210 142 6 64 268 77 280 2.94e-11 64.7

Find 109 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAGGTAAGCCCGGAATTA+AGG 0.209782 tig0040567:-3151 None:intergenic
GGTTCAAGCGTGGTTGTTTA+TGG 0.236597 tig0040567:+3881 Msa1459950:CDS
TTCCCCTCACAACTTTCTTT+TGG 0.256081 tig0040567:-4102 None:intergenic
TAATTGTCTTCTTCGTCTTC+CGG 0.313205 tig0040567:+3185 Msa1459950:CDS
TTGTCCTTGCAAGGCATTGC+AGG 0.324010 tig0040567:-3401 None:intergenic
TGTCGTAGGCCGGAATCTTC+TGG 0.330235 tig0040567:+4051 Msa1459950:CDS
AAGAAAGTTGTGAGGGGAAA+TGG 0.336256 tig0040567:+4106 Msa1459950:CDS
TGACACTATCTCCCAAGTTT+AGG 0.343062 tig0040567:+3061 Msa1459950:CDS
AGCCATAGTTTCCCAGCTAT+TGG 0.348050 tig0040567:-3834 None:intergenic
TGCCAACATGGGAACCAATA+TGG 0.351045 tig0040567:+3709 Msa1459950:CDS
TGTTTCTTATTAAAGGGTTT+AGG 0.355686 tig0040567:+2945 Msa1459950:intron
CTTCCCAGGAATCGGCTTCC+TGG 0.361899 tig0040567:-3955 None:intergenic
AGGCAAAGGGGAGCCATCTA+TGG 0.368132 tig0040567:-3978 None:intergenic
TAGATCCGATTAGCGGGAAT+TGG 0.368843 tig0040567:+3678 Msa1459950:CDS
CCTCTAGGAGAGACATAAAA+AGG 0.369553 tig0040567:-3791 None:intergenic
AACCAATAGCTGGGAAACTA+TGG 0.377206 tig0040567:+3832 Msa1459950:CDS
AGAGAAGAACCCTTAATTCC+GGG 0.383870 tig0040567:+3141 Msa1459950:CDS
AAGAGAAGAACCCTTAATTC+CGG 0.391873 tig0040567:+3140 Msa1459950:CDS
GTTCAGAACTGCAGCATCAT+AGG 0.399835 tig0040567:-3735 None:intergenic
ATAACCAGGAAGCCGATTCC+TGG 0.405175 tig0040567:+3951 Msa1459950:CDS
CAAATGGTTTCAAAGATCCT+TGG 0.422633 tig0040567:+3294 Msa1459950:CDS
GTTTCCCAGCTATTGGTTCT+CGG 0.422970 tig0040567:-3827 None:intergenic
GCGCGCCAATTCCCGCTAAT+CGG 0.425020 tig0040567:-3683 None:intergenic
AGCATCATAGGATGCCATAT+TGG 0.428156 tig0040567:-3723 None:intergenic
TCAGGTAAGCCCGGAATTAA+GGG 0.433050 tig0040567:-3150 None:intergenic
TGCATATTTGCTCAGGCAAA+GGG 0.438541 tig0040567:-3991 None:intergenic
GAGATTTAACGATAAAGATA+AGG 0.440458 tig0040567:+2977 Msa1459950:intron
GCTCGAAAGAATGAAGCTTA+AGG 0.440805 tig0040567:+3925 Msa1459950:CDS
TCACAAGCATTCACAGCAAA+AGG 0.445454 tig0040567:-4016 None:intergenic
CAACAGCAACCAGAAGATTC+CGG 0.446885 tig0040567:-4060 None:intergenic
TTATGTCTCTCCTAGAGGAC+AGG 0.451993 tig0040567:+3796 Msa1459950:CDS
AACCACCGCTAACCTAAACT+TGG 0.453592 tig0040567:-3073 None:intergenic
AAAGGTTTGCATATTTGCTC+AGG 0.456311 tig0040567:-3998 None:intergenic
CGTGGATTGTCCTCTTGACT+TGG 0.459145 tig0040567:+3502 Msa1459950:CDS
TTTGCATATCATAAGTGTAC+TGG 0.463348 tig0040567:+3326 Msa1459950:CDS
AAGGACAAGGTTTGTCCTCA+TGG 0.464137 tig0040567:+3416 Msa1459950:CDS
ATGATGCTGCAGTTCTGAAC+GGG 0.464281 tig0040567:+3738 Msa1459950:CDS
ATCTATGGCTTCCCAGGAAT+CGG 0.471739 tig0040567:-3963 None:intergenic
GATTCCTGGGAAGCCATAGA+TGG 0.472750 tig0040567:+3965 Msa1459950:CDS
GTCAAATTTATGTCGTAGGC+CGG 0.477828 tig0040567:+4041 Msa1459950:CDS
ATCTCCCAAGTTTAGGTTAG+CGG 0.477981 tig0040567:+3068 Msa1459950:CDS
TACTGGAAAGATTCAATGGC+AGG 0.482203 tig0040567:+3343 Msa1459950:CDS
TTGTAACAGAAGGATGGTTA+TGG 0.483194 tig0040567:+3768 Msa1459950:CDS
CAATTAAGAGCAACATCATC+AGG 0.483657 tig0040567:-3168 None:intergenic
CGGAATCTTCTGGTTGCTGT+TGG 0.483823 tig0040567:+4061 Msa1459950:CDS
GGAGCCATCTATGGCTTCCC+AGG 0.485903 tig0040567:-3969 None:intergenic
TAGTACTGATCTTTATGAGC+TGG 0.486572 tig0040567:+3640 Msa1459950:CDS
ACGATCCGAGAACCAATAGC+TGG 0.496530 tig0040567:+3822 Msa1459950:CDS
TTGCATATTTGCTCAGGCAA+AGG 0.504929 tig0040567:-3992 None:intergenic
CTTGCAAGGCATTGCAGGGA+TGG 0.507543 tig0040567:-3396 None:intergenic
AGCTGGGAAACTATGGCTGT+TGG 0.507613 tig0040567:+3839 Msa1459950:CDS
GATGGGATGGTTTATGCAGC+TGG 0.507844 tig0040567:+3611 Msa1459950:CDS
TGCCATATTGGTTCCCATGT+TGG 0.508940 tig0040567:-3711 None:intergenic
TGCAATGCCTTGCAAGGACA+AGG 0.510866 tig0040567:+3403 Msa1459950:CDS
ATGGGATGGTTTATGCAGCT+GGG 0.512009 tig0040567:+3612 Msa1459950:CDS
AGGTATTAGATCCGATTAGC+GGG 0.521082 tig0040567:+3672 Msa1459950:CDS
TTGGGAGATAGTGTCATTTG+AGG 0.521340 tig0040567:-3054 None:intergenic
AATGGAACTTCAGTGTTCAA+TGG 0.527552 tig0040567:+4124 Msa1459950:CDS
AGTGTACTGGAAAGATTCAA+TGG 0.529957 tig0040567:+3339 Msa1459950:CDS
GCTCAGAAACAACAAATAAG+TGG 0.537113 tig0040567:-3904 None:intergenic
TAACCAGGAAGCCGATTCCT+GGG 0.538113 tig0040567:+3952 Msa1459950:CDS
CTTAGAGAATGATCTAACTC+TGG 0.539641 tig0040567:-3120 None:intergenic
TTTGCCAGTGGAGTAATCGA+TGG 0.542803 tig0040567:+3593 Msa1459950:CDS
CAAGCACCGGTTCACAAGCT+AGG 0.543317 tig0040567:+3027 Msa1459950:CDS
TTGCCAGTGGAGTAATCGAT+GGG 0.543911 tig0040567:+3594 Msa1459950:CDS
GGACTTAGAGAAGGGTGGAC+TGG 0.550423 tig0040567:+3860 Msa1459950:CDS
TTGGCGCGCTATTGCCAACA+TGG 0.550527 tig0040567:+3697 Msa1459950:CDS
GGATCACCTAGCTTGTGAAC+CGG 0.553072 tig0040567:-3033 None:intergenic
GAACCAAAAGAAAGTTGTGA+GGG 0.555102 tig0040567:+4099 Msa1459950:CDS
GCAACATCATCAGGTAAGCC+CGG 0.556029 tig0040567:-3159 None:intergenic
GGATCGTAGACCTGTCCTCT+AGG 0.560032 tig0040567:-3806 None:intergenic
CATCCCTGCAATGCCTTGCA+AGG 0.560526 tig0040567:+3397 Msa1459950:CDS
GATTGTCAAATTTATGTCGT+AGG 0.561359 tig0040567:+4037 Msa1459950:CDS
GAATGATCTAACTCTGGCAT+CGG 0.561877 tig0040567:-3114 None:intergenic
CATCCCATCGATTACTCCAC+TGG 0.564791 tig0040567:-3597 None:intergenic
TGTCCTTGCAAGGCATTGCA+GGG 0.566024 tig0040567:-3400 None:intergenic
TCTTTACGTATGCGGTGGCA+TGG 0.567533 tig0040567:+3472 Msa1459950:CDS
TATGATGCTGCAGTTCTGAA+CGG 0.569619 tig0040567:+3737 Msa1459950:CDS
ATGGCTGTTGGACTTAGAGA+AGG 0.574595 tig0040567:+3851 Msa1459950:CDS
CAGTGGAGTAATCGATGGGA+TGG 0.581579 tig0040567:+3598 Msa1459950:CDS
GGACAAACCTTGTCCTTGCA+AGG 0.597418 tig0040567:-3410 None:intergenic
TGGGATGGTTTATGCAGCTG+GGG 0.601401 tig0040567:+3613 Msa1459950:CDS
GAAGCTTAAGGTTTATAACC+AGG 0.604476 tig0040567:+3937 Msa1459950:CDS
TCCCAAGTTTAGGTTAGCGG+TGG 0.605858 tig0040567:+3071 Msa1459950:CDS
TTATGAGCTGGATTCAGCTG+AGG 0.606127 tig0040567:+3652 Msa1459950:CDS
TATTTCAACACCAAGTCAAG+AGG 0.607388 tig0040567:-3512 None:intergenic
CGGTGGCATGGTCTCTGACG+TGG 0.609464 tig0040567:+3484 Msa1459950:CDS
GAGGTATTAGATCCGATTAG+CGG 0.618113 tig0040567:+3671 Msa1459950:CDS
GGGAAACTGCTTGTAACAGA+AGG 0.619168 tig0040567:+3758 Msa1459950:CDS
CGATCCGAGAACCAATAGCT+GGG 0.621734 tig0040567:+3823 Msa1459950:CDS
TGGCTGTTGGACTTAGAGAA+GGG 0.623432 tig0040567:+3852 Msa1459950:CDS
AACTGCTTGTAACAGAAGGA+TGG 0.627353 tig0040567:+3762 Msa1459950:CDS
TGGCGCGCTATTGCCAACAT+GGG 0.632332 tig0040567:+3698 Msa1459950:CDS
TGAATCGAATGATCAGTGCT+AGG 0.644133 tig0040567:+3564 Msa1459950:CDS
CTGTTGGACTTAGAGAAGGG+TGG 0.655252 tig0040567:+3855 Msa1459950:CDS
GGTAATCTTTACGTATGCGG+TGG 0.656082 tig0040567:+3467 Msa1459950:CDS
TGTGTTTCGATGCCTCACGA+TGG 0.656289 tig0040567:+3446 Msa1459950:CDS
ACCACCGCTAACCTAAACTT+GGG 0.656767 tig0040567:-3072 None:intergenic
TGAACCAAAAGAAAGTTGTG+AGG 0.660024 tig0040567:+4098 Msa1459950:CDS
GCATATTTGCTCAGGCAAAG+GGG 0.660049 tig0040567:-3990 None:intergenic
CTAGTAACTCAAAATGCGCG+TGG 0.665345 tig0040567:+2026 None:intergenic
ACGTAAAGATTACCATCGTG+AGG 0.668276 tig0040567:-3458 None:intergenic
AGGGTGGACTGGTTCAAGCG+TGG 0.672213 tig0040567:+3871 Msa1459950:CDS
GGGATGGTTTATGCAGCTGG+GGG 0.673599 tig0040567:+3614 Msa1459950:CDS
ACTGATCATTCGATTCATCA+CGG 0.677591 tig0040567:-3558 None:intergenic
GGATGGTTTATGCAGCTGGG+GGG 0.678556 tig0040567:+3615 Msa1459950:CDS
AACCAAAAGAAAGTTGTGAG+GGG 0.685350 tig0040567:+4100 Msa1459950:CDS
GATGGTAATCTTTACGTATG+CGG 0.716864 tig0040567:+3464 Msa1459950:CDS
GAAACACACCGAAAACCATG+AGG 0.732405 tig0040567:-3431 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTGTTTCTTATTAAA+GGG + tig0040567:2939-2958 Msa1459950:intron 10.0%
!!! TTTTATTGTTTCTTATTAAA+GGG + tig0040567:2939-2958 Msa1459950:intron 10.0%
!! AATAAAAATCTCAACTTTAT+AGG - tig0040567:2450-2469 None:intergenic 15.0%
!!! CATTTTTTATAGCAAATTAA+AGG - tig0040567:2771-2790 None:intergenic 15.0%
!!! GTTTTATTGTTTCTTATTAA+AGG + tig0040567:2938-2957 Msa1459950:intron 15.0%
!! AATAAAAATCTCAACTTTAT+AGG - tig0040567:2450-2469 None:intergenic 15.0%
!!! CATTTTTTATAGCAAATTAA+AGG - tig0040567:2771-2790 None:intergenic 15.0%
!!! GTTTTATTGTTTCTTATTAA+AGG + tig0040567:2938-2957 Msa1459950:intron 15.0%
!!! GATGATTAATTTTTGCTAAT+AGG - tig0040567:2110-2129 None:intergenic 20.0%
!! TTAACACATACATAAATTCT+GGG + tig0040567:2370-2389 Msa1459950:intron 20.0%
!!! TTTTTATTTGATATTGCTTC+TGG + tig0040567:2462-2481 Msa1459950:intron 20.0%
!!! TTTTATTTGATATTGCTTCT+GGG + tig0040567:2463-2482 Msa1459950:intron 20.0%
!! ATCAGTTGAATATCTAATAA+GGG + tig0040567:2648-2667 Msa1459950:intron 20.0%
!!! TGTTTTATTCTATCTTCTTT+TGG + tig0040567:2684-2703 Msa1459950:intron 20.0%
!!! GATGATTAATTTTTGCTAAT+AGG - tig0040567:2110-2129 None:intergenic 20.0%
!! TTAACACATACATAAATTCT+GGG + tig0040567:2370-2389 Msa1459950:intron 20.0%
!!! TTTTTATTTGATATTGCTTC+TGG + tig0040567:2462-2481 Msa1459950:intron 20.0%
!!! TTTTATTTGATATTGCTTCT+GGG + tig0040567:2463-2482 Msa1459950:intron 20.0%
!! ATCAGTTGAATATCTAATAA+GGG + tig0040567:2648-2667 Msa1459950:intron 20.0%
!!! TGTTTTATTCTATCTTCTTT+TGG + tig0040567:2684-2703 Msa1459950:intron 20.0%
! GTTAACACATACATAAATTC+TGG + tig0040567:2369-2388 Msa1459950:intron 25.0%
! TTTATAGGAAAATAACAGTG+AGG - tig0040567:2435-2454 None:intergenic 25.0%
! GATCAGTTGAATATCTAATA+AGG + tig0040567:2647-2666 Msa1459950:intron 25.0%
! TCAGTTGAATATCTAATAAG+GGG + tig0040567:2649-2668 Msa1459950:intron 25.0%
!! TTTTCTCTTTATTGTGGATT+AGG + tig0040567:2734-2753 Msa1459950:intron 25.0%
! TATCTCTTGGATTGAAAATT+TGG + tig0040567:2828-2847 Msa1459950:intron 25.0%
! TGTTTCTTATTAAAGGGTTT+AGG + tig0040567:2945-2964 Msa1459950:intron 25.0%
! GAGATTTAACGATAAAGATA+AGG + tig0040567:2977-2996 Msa1459950:intron 25.0%
!!! AAGAGAGGTTTTTTACTAAT+AGG + tig0040567:3268-3287 Msa1459950:intron 25.0%
!! TTTTACTAATAGGAAGCAAA+TGG + tig0040567:3278-3297 Msa1459950:intron 25.0%
! GTTAACACATACATAAATTC+TGG + tig0040567:2369-2388 Msa1459950:intron 25.0%
! TTTATAGGAAAATAACAGTG+AGG - tig0040567:2435-2454 None:intergenic 25.0%
! GATCAGTTGAATATCTAATA+AGG + tig0040567:2647-2666 Msa1459950:intron 25.0%
! TCAGTTGAATATCTAATAAG+GGG + tig0040567:2649-2668 Msa1459950:intron 25.0%
!! TTTTCTCTTTATTGTGGATT+AGG + tig0040567:2734-2753 Msa1459950:intron 25.0%
! TATCTCTTGGATTGAAAATT+TGG + tig0040567:2828-2847 Msa1459950:intron 25.0%
! TGTTTCTTATTAAAGGGTTT+AGG + tig0040567:2945-2964 Msa1459950:intron 25.0%
! GAGATTTAACGATAAAGATA+AGG + tig0040567:2977-2996 Msa1459950:intron 25.0%
!!! AAGAGAGGTTTTTTACTAAT+AGG + tig0040567:3268-3287 Msa1459950:intron 25.0%
!! TTTTACTAATAGGAAGCAAA+TGG + tig0040567:3278-3297 Msa1459950:intron 25.0%
AGGAAGATTTGATTATTGTG+TGG - tig0040567:2090-2109 None:intergenic 30.0%
TTTGTTTGTGAGGAGAAAAA+TGG - tig0040567:2150-2169 None:intergenic 30.0%
ACAAAGAAAGAGATAAAGAC+TGG - tig0040567:2187-2206 None:intergenic 30.0%
ATGAGATTCAATTCAGTTGA+AGG - tig0040567:2234-2253 None:intergenic 30.0%
CTTACAAGAAGCAAATAAAG+TGG - tig0040567:2273-2292 None:intergenic 30.0%
CAAAAACACACAAAGAAACA+AGG - tig0040567:2326-2345 None:intergenic 30.0%
!!! TTTTTTGGAGACATGTGAAT+TGG + tig0040567:2493-2512 Msa1459950:intron 30.0%
!! TTTTTGGAGACATGTGAATT+GGG + tig0040567:2494-2513 Msa1459950:intron 30.0%
! TGAATTGGGTTATTTGCTTT+TGG + tig0040567:2508-2527 Msa1459950:intron 30.0%
! GTGCAAAATTATAGCCTTTT+TGG + tig0040567:2530-2549 Msa1459950:intron 30.0%
! TATCTTCTTTTGGATCATTG+TGG + tig0040567:2694-2713 Msa1459950:intron 30.0%
!!! GTGCTTTTTTCTCTTTATTG+TGG + tig0040567:2728-2747 Msa1459950:intron 30.0%
!! CTTTATTGTGGATTAGGATT+TGG + tig0040567:2740-2759 Msa1459950:intron 30.0%
TGGAATAGATTCTTATCTCT+TGG + tig0040567:2815-2834 Msa1459950:intron 30.0%
TATGCAAATACAAAAAGCCA+AGG - tig0040567:3314-3333 None:intergenic 30.0%
TTTGCATATCATAAGTGTAC+TGG + tig0040567:3326-3345 Msa1459950:CDS 30.0%
!! TTGATCTAACTCACTTTTCT+TGG + tig0040567:3369-3388 Msa1459950:CDS 30.0%
GATTGTCAAATTTATGTCGT+AGG + tig0040567:4037-4056 Msa1459950:CDS 30.0%
!!! AACTTTCTTTTGGTTCAGTA+TGG - tig0040567:4095-4114 None:intergenic 30.0%
AGGAAGATTTGATTATTGTG+TGG - tig0040567:2090-2109 None:intergenic 30.0%
TTTGTTTGTGAGGAGAAAAA+TGG - tig0040567:2150-2169 None:intergenic 30.0%
ACAAAGAAAGAGATAAAGAC+TGG - tig0040567:2187-2206 None:intergenic 30.0%
ATGAGATTCAATTCAGTTGA+AGG - tig0040567:2234-2253 None:intergenic 30.0%
CTTACAAGAAGCAAATAAAG+TGG - tig0040567:2273-2292 None:intergenic 30.0%
CAAAAACACACAAAGAAACA+AGG - tig0040567:2326-2345 None:intergenic 30.0%
!!! TTTTTTGGAGACATGTGAAT+TGG + tig0040567:2493-2512 Msa1459950:intron 30.0%
!! TTTTTGGAGACATGTGAATT+GGG + tig0040567:2494-2513 Msa1459950:intron 30.0%
! TGAATTGGGTTATTTGCTTT+TGG + tig0040567:2508-2527 Msa1459950:intron 30.0%
! GTGCAAAATTATAGCCTTTT+TGG + tig0040567:2530-2549 Msa1459950:intron 30.0%
! TATCTTCTTTTGGATCATTG+TGG + tig0040567:2694-2713 Msa1459950:intron 30.0%
!!! GTGCTTTTTTCTCTTTATTG+TGG + tig0040567:2728-2747 Msa1459950:intron 30.0%
!! CTTTATTGTGGATTAGGATT+TGG + tig0040567:2740-2759 Msa1459950:intron 30.0%
TGGAATAGATTCTTATCTCT+TGG + tig0040567:2815-2834 Msa1459950:intron 30.0%
TATGCAAATACAAAAAGCCA+AGG - tig0040567:3314-3333 None:intergenic 30.0%
TTTGCATATCATAAGTGTAC+TGG + tig0040567:3326-3345 Msa1459950:CDS 30.0%
!! TTGATCTAACTCACTTTTCT+TGG + tig0040567:3369-3388 Msa1459950:CDS 30.0%
GATTGTCAAATTTATGTCGT+AGG + tig0040567:4037-4056 Msa1459950:CDS 30.0%
!!! AACTTTCTTTTGGTTCAGTA+TGG - tig0040567:4095-4114 None:intergenic 30.0%
AAGCTAGTAGAGCAGATATA+AGG - tig0040567:2060-2079 None:intergenic 35.0%
!!! TGAAGACTGTTTTGTTTGTG+AGG - tig0040567:2160-2179 None:intergenic 35.0%
AGAAACAAGGTAAAGTGAAG+AGG - tig0040567:2313-2332 None:intergenic 35.0%
CTGAGACTTAAGAACCAAAA+AGG - tig0040567:2547-2566 None:intergenic 35.0%
AAATGTGAGTGTATCAGCTT+AGG + tig0040567:2786-2805 Msa1459950:intron 35.0%
TGTATCAGCTTAGGAGAATT+TGG + tig0040567:2795-2814 Msa1459950:intron 35.0%
CACTATGTTCTCAAATTGGT+TGG - tig0040567:2880-2899 None:intergenic 35.0%
CAACCAATTTGAGAACATAG+TGG + tig0040567:2878-2897 Msa1459950:intron 35.0%
CTTCCACTATGTTCTCAAAT+TGG - tig0040567:2884-2903 None:intergenic 35.0%
CTTAGAGAATGATCTAACTC+TGG - tig0040567:3123-3142 None:intergenic 35.0%
AAGAGAAGAACCCTTAATTC+CGG + tig0040567:3140-3159 Msa1459950:CDS 35.0%
CAATTAAGAGCAACATCATC+AGG - tig0040567:3171-3190 None:intergenic 35.0%
TAATTGTCTTCTTCGTCTTC+CGG + tig0040567:3185-3204 Msa1459950:CDS 35.0%
TTCAAAGTCATTCATCCTGT+AGG + tig0040567:3208-3227 Msa1459950:intron 35.0%
TCAAAGTCATTCATCCTGTA+GGG + tig0040567:3209-3228 Msa1459950:intron 35.0%
! TGTTACTTGGTAGTAAAGAG+AGG + tig0040567:3253-3272 Msa1459950:intron 35.0%
CAAATGGTTTCAAAGATCCT+TGG + tig0040567:3294-3313 Msa1459950:CDS 35.0%
AGTGTACTGGAAAGATTCAA+TGG + tig0040567:3339-3358 Msa1459950:CDS 35.0%
GATGGTAATCTTTACGTATG+CGG + tig0040567:3464-3483 Msa1459950:CDS 35.0%
TATTTCAACACCAAGTCAAG+AGG - tig0040567:3515-3534 None:intergenic 35.0%
ATGAGATCACGAAAAATCGT+TGG + tig0040567:3534-3553 Msa1459950:CDS 35.0%
ACTGATCATTCGATTCATCA+CGG - tig0040567:3561-3580 None:intergenic 35.0%
!! TAGTACTGATCTTTATGAGC+TGG + tig0040567:3640-3659 Msa1459950:CDS 35.0%
TTGTAACAGAAGGATGGTTA+TGG + tig0040567:3768-3787 Msa1459950:CDS 35.0%
GCTCAGAAACAACAAATAAG+TGG - tig0040567:3907-3926 None:intergenic 35.0%
GAAGCTTAAGGTTTATAACC+AGG + tig0040567:3937-3956 Msa1459950:CDS 35.0%
AAAGGTTTGCATATTTGCTC+AGG - tig0040567:4001-4020 None:intergenic 35.0%
TGAACCAAAAGAAAGTTGTG+AGG + tig0040567:4098-4117 Msa1459950:CDS 35.0%
GAACCAAAAGAAAGTTGTGA+GGG + tig0040567:4099-4118 Msa1459950:CDS 35.0%
AACCAAAAGAAAGTTGTGAG+GGG + tig0040567:4100-4119 Msa1459950:CDS 35.0%
AATGGAACTTCAGTGTTCAA+TGG + tig0040567:4124-4143 Msa1459950:CDS 35.0%
AAGCTAGTAGAGCAGATATA+AGG - tig0040567:2060-2079 None:intergenic 35.0%
!!! TGAAGACTGTTTTGTTTGTG+AGG - tig0040567:2160-2179 None:intergenic 35.0%
AGAAACAAGGTAAAGTGAAG+AGG - tig0040567:2313-2332 None:intergenic 35.0%
CTGAGACTTAAGAACCAAAA+AGG - tig0040567:2547-2566 None:intergenic 35.0%
AAATGTGAGTGTATCAGCTT+AGG + tig0040567:2786-2805 Msa1459950:intron 35.0%
TGTATCAGCTTAGGAGAATT+TGG + tig0040567:2795-2814 Msa1459950:intron 35.0%
CACTATGTTCTCAAATTGGT+TGG - tig0040567:2880-2899 None:intergenic 35.0%
CAACCAATTTGAGAACATAG+TGG + tig0040567:2878-2897 Msa1459950:intron 35.0%
CTTCCACTATGTTCTCAAAT+TGG - tig0040567:2884-2903 None:intergenic 35.0%
CTTAGAGAATGATCTAACTC+TGG - tig0040567:3123-3142 None:intergenic 35.0%
AAGAGAAGAACCCTTAATTC+CGG + tig0040567:3140-3159 Msa1459950:CDS 35.0%
CAATTAAGAGCAACATCATC+AGG - tig0040567:3171-3190 None:intergenic 35.0%
TAATTGTCTTCTTCGTCTTC+CGG + tig0040567:3185-3204 Msa1459950:CDS 35.0%
TTCAAAGTCATTCATCCTGT+AGG + tig0040567:3208-3227 Msa1459950:intron 35.0%
TCAAAGTCATTCATCCTGTA+GGG + tig0040567:3209-3228 Msa1459950:intron 35.0%
! TGTTACTTGGTAGTAAAGAG+AGG + tig0040567:3253-3272 Msa1459950:intron 35.0%
CAAATGGTTTCAAAGATCCT+TGG + tig0040567:3294-3313 Msa1459950:CDS 35.0%
AGTGTACTGGAAAGATTCAA+TGG + tig0040567:3339-3358 Msa1459950:CDS 35.0%
GATGGTAATCTTTACGTATG+CGG + tig0040567:3464-3483 Msa1459950:CDS 35.0%
TATTTCAACACCAAGTCAAG+AGG - tig0040567:3515-3534 None:intergenic 35.0%
ATGAGATCACGAAAAATCGT+TGG + tig0040567:3534-3553 Msa1459950:CDS 35.0%
ACTGATCATTCGATTCATCA+CGG - tig0040567:3561-3580 None:intergenic 35.0%
!! TAGTACTGATCTTTATGAGC+TGG + tig0040567:3640-3659 Msa1459950:CDS 35.0%
TTGTAACAGAAGGATGGTTA+TGG + tig0040567:3768-3787 Msa1459950:CDS 35.0%
GCTCAGAAACAACAAATAAG+TGG - tig0040567:3907-3926 None:intergenic 35.0%
GAAGCTTAAGGTTTATAACC+AGG + tig0040567:3937-3956 Msa1459950:CDS 35.0%
AAAGGTTTGCATATTTGCTC+AGG - tig0040567:4001-4020 None:intergenic 35.0%
TGAACCAAAAGAAAGTTGTG+AGG + tig0040567:4098-4117 Msa1459950:CDS 35.0%
GAACCAAAAGAAAGTTGTGA+GGG + tig0040567:4099-4118 Msa1459950:CDS 35.0%
AACCAAAAGAAAGTTGTGAG+GGG + tig0040567:4100-4119 Msa1459950:CDS 35.0%
AATGGAACTTCAGTGTTCAA+TGG + tig0040567:4124-4143 Msa1459950:CDS 35.0%
!!! CTTCTGGGTGTGTTGTTTTT+TGG + tig0040567:2478-2497 Msa1459950:intron 40.0%
!! CTAGCTTTTTACGAAGTAGC+AGG + tig0040567:2582-2601 Msa1459950:intron 40.0%
! CTTCTTTTGGATCATTGTGG+AGG + tig0040567:2697-2716 Msa1459950:intron 40.0%
! ATTTTCGTCTCAACAAGCAC+CGG + tig0040567:3014-3033 Msa1459950:CDS 40.0%
!! TTGGGAGATAGTGTCATTTG+AGG - tig0040567:3057-3076 None:intergenic 40.0%
TGACACTATCTCCCAAGTTT+AGG + tig0040567:3061-3080 Msa1459950:CDS 40.0%
! ATCTCCCAAGTTTAGGTTAG+CGG + tig0040567:3068-3087 Msa1459950:CDS 40.0%
GAATGATCTAACTCTGGCAT+CGG - tig0040567:3117-3136 None:intergenic 40.0%
AGAGAAGAACCCTTAATTCC+GGG + tig0040567:3141-3160 Msa1459950:CDS 40.0%
CAGGATGAATGACTTTGAAC+CGG - tig0040567:3207-3226 None:intergenic 40.0%
AAGAGGTGGCATATGTTACT+TGG + tig0040567:3240-3259 Msa1459950:intron 40.0%
TACTGGAAAGATTCAATGGC+AGG + tig0040567:3343-3362 Msa1459950:CDS 40.0%
! AGGTTTGTCCTCATGGTTTT+CGG + tig0040567:3423-3442 Msa1459950:CDS 40.0%
ACGTAAAGATTACCATCGTG+AGG - tig0040567:3461-3480 None:intergenic 40.0%
TGAATCGAATGATCAGTGCT+AGG + tig0040567:3564-3583 Msa1459950:CDS 40.0%
! GAGGTATTAGATCCGATTAG+CGG + tig0040567:3671-3690 Msa1459950:CDS 40.0%
AGGTATTAGATCCGATTAGC+GGG + tig0040567:3672-3691 Msa1459950:CDS 40.0%
AGCATCATAGGATGCCATAT+TGG - tig0040567:3726-3745 None:intergenic 40.0%
!! TATGATGCTGCAGTTCTGAA+CGG + tig0040567:3737-3756 Msa1459950:CDS 40.0%
AACTGCTTGTAACAGAAGGA+TGG + tig0040567:3762-3781 Msa1459950:CDS 40.0%
! CCTCTAGGAGAGACATAAAA+AGG - tig0040567:3794-3813 None:intergenic 40.0%
! CCTTTTTATGTCTCTCCTAG+AGG + tig0040567:3791-3810 Msa1459950:CDS 40.0%
AACCAATAGCTGGGAAACTA+TGG + tig0040567:3832-3851 Msa1459950:CDS 40.0%
GCTCGAAAGAATGAAGCTTA+AGG + tig0040567:3925-3944 Msa1459950:CDS 40.0%
TGCATATTTGCTCAGGCAAA+GGG - tig0040567:3994-4013 None:intergenic 40.0%
TTGCATATTTGCTCAGGCAA+AGG - tig0040567:3995-4014 None:intergenic 40.0%
TCACAAGCATTCACAGCAAA+AGG - tig0040567:4019-4038 None:intergenic 40.0%
GTCAAATTTATGTCGTAGGC+CGG + tig0040567:4041-4060 Msa1459950:CDS 40.0%
! TTCCCCTCACAACTTTCTTT+TGG - tig0040567:4105-4124 None:intergenic 40.0%
AAGAAAGTTGTGAGGGGAAA+TGG + tig0040567:4106-4125 Msa1459950:CDS 40.0%
!!! CTTCTGGGTGTGTTGTTTTT+TGG + tig0040567:2478-2497 Msa1459950:intron 40.0%
!! CTAGCTTTTTACGAAGTAGC+AGG + tig0040567:2582-2601 Msa1459950:intron 40.0%
! CTTCTTTTGGATCATTGTGG+AGG + tig0040567:2697-2716 Msa1459950:intron 40.0%
! ATTTTCGTCTCAACAAGCAC+CGG + tig0040567:3014-3033 Msa1459950:CDS 40.0%
!! TTGGGAGATAGTGTCATTTG+AGG - tig0040567:3057-3076 None:intergenic 40.0%
TGACACTATCTCCCAAGTTT+AGG + tig0040567:3061-3080 Msa1459950:CDS 40.0%
! ATCTCCCAAGTTTAGGTTAG+CGG + tig0040567:3068-3087 Msa1459950:CDS 40.0%
GAATGATCTAACTCTGGCAT+CGG - tig0040567:3117-3136 None:intergenic 40.0%
AGAGAAGAACCCTTAATTCC+GGG + tig0040567:3141-3160 Msa1459950:CDS 40.0%
CAGGATGAATGACTTTGAAC+CGG - tig0040567:3207-3226 None:intergenic 40.0%
AAGAGGTGGCATATGTTACT+TGG + tig0040567:3240-3259 Msa1459950:intron 40.0%
TACTGGAAAGATTCAATGGC+AGG + tig0040567:3343-3362 Msa1459950:CDS 40.0%
! AGGTTTGTCCTCATGGTTTT+CGG + tig0040567:3423-3442 Msa1459950:CDS 40.0%
ACGTAAAGATTACCATCGTG+AGG - tig0040567:3461-3480 None:intergenic 40.0%
TGAATCGAATGATCAGTGCT+AGG + tig0040567:3564-3583 Msa1459950:CDS 40.0%
! GAGGTATTAGATCCGATTAG+CGG + tig0040567:3671-3690 Msa1459950:CDS 40.0%
AGGTATTAGATCCGATTAGC+GGG + tig0040567:3672-3691 Msa1459950:CDS 40.0%
AGCATCATAGGATGCCATAT+TGG - tig0040567:3726-3745 None:intergenic 40.0%
!! TATGATGCTGCAGTTCTGAA+CGG + tig0040567:3737-3756 Msa1459950:CDS 40.0%
AACTGCTTGTAACAGAAGGA+TGG + tig0040567:3762-3781 Msa1459950:CDS 40.0%
! CCTCTAGGAGAGACATAAAA+AGG - tig0040567:3794-3813 None:intergenic 40.0%
! CCTTTTTATGTCTCTCCTAG+AGG + tig0040567:3791-3810 Msa1459950:CDS 40.0%
AACCAATAGCTGGGAAACTA+TGG + tig0040567:3832-3851 Msa1459950:CDS 40.0%
GCTCGAAAGAATGAAGCTTA+AGG + tig0040567:3925-3944 Msa1459950:CDS 40.0%
TGCATATTTGCTCAGGCAAA+GGG - tig0040567:3994-4013 None:intergenic 40.0%
TTGCATATTTGCTCAGGCAA+AGG - tig0040567:3995-4014 None:intergenic 40.0%
TCACAAGCATTCACAGCAAA+AGG - tig0040567:4019-4038 None:intergenic 40.0%
GTCAAATTTATGTCGTAGGC+CGG + tig0040567:4041-4060 Msa1459950:CDS 40.0%
! TTCCCCTCACAACTTTCTTT+TGG - tig0040567:4105-4124 None:intergenic 40.0%
AAGAAAGTTGTGAGGGGAAA+TGG + tig0040567:4106-4125 Msa1459950:CDS 40.0%
! CTTTTGGATCATTGTGGAGG+AGG + tig0040567:2700-2719 Msa1459950:intron 45.0%
GATCATTGTGGAGGAGGAAT+TGG + tig0040567:2706-2725 Msa1459950:intron 45.0%
ACCACCGCTAACCTAAACTT+GGG - tig0040567:3075-3094 None:intergenic 45.0%
AACCACCGCTAACCTAAACT+TGG - tig0040567:3076-3095 None:intergenic 45.0%
TCAGGTAAGCCCGGAATTAA+GGG - tig0040567:3153-3172 None:intergenic 45.0%
ATCAGGTAAGCCCGGAATTA+AGG - tig0040567:3154-3173 None:intergenic 45.0%
AAGGACAAGGTTTGTCCTCA+TGG + tig0040567:3416-3435 Msa1459950:CDS 45.0%
GAAACACACCGAAAACCATG+AGG - tig0040567:3434-3453 None:intergenic 45.0%
GGTAATCTTTACGTATGCGG+TGG + tig0040567:3467-3486 Msa1459950:CDS 45.0%
!!! GCTAGGTCATTTTTTGCCAG+TGG + tig0040567:3581-3600 Msa1459950:CDS 45.0%
TTTGCCAGTGGAGTAATCGA+TGG + tig0040567:3593-3612 Msa1459950:CDS 45.0%
TTGCCAGTGGAGTAATCGAT+GGG + tig0040567:3594-3613 Msa1459950:CDS 45.0%
ATGGGATGGTTTATGCAGCT+GGG + tig0040567:3612-3631 Msa1459950:CDS 45.0%
TTATGAGCTGGATTCAGCTG+AGG + tig0040567:3652-3671 Msa1459950:CDS 45.0%
TAGATCCGATTAGCGGGAAT+TGG + tig0040567:3678-3697 Msa1459950:CDS 45.0%
TGCCAACATGGGAACCAATA+TGG + tig0040567:3709-3728 Msa1459950:CDS 45.0%
!! TGCCATATTGGTTCCCATGT+TGG - tig0040567:3714-3733 None:intergenic 45.0%
GTTCAGAACTGCAGCATCAT+AGG - tig0040567:3738-3757 None:intergenic 45.0%
!! ATGATGCTGCAGTTCTGAAC+GGG + tig0040567:3738-3757 Msa1459950:CDS 45.0%
GGGAAACTGCTTGTAACAGA+AGG + tig0040567:3758-3777 Msa1459950:CDS 45.0%
TTATGTCTCTCCTAGAGGAC+AGG + tig0040567:3796-3815 Msa1459950:CDS 45.0%
!! GTTTCCCAGCTATTGGTTCT+CGG - tig0040567:3830-3849 None:intergenic 45.0%
AGCCATAGTTTCCCAGCTAT+TGG - tig0040567:3837-3856 None:intergenic 45.0%
ATGGCTGTTGGACTTAGAGA+AGG + tig0040567:3851-3870 Msa1459950:CDS 45.0%
TGGCTGTTGGACTTAGAGAA+GGG + tig0040567:3852-3871 Msa1459950:CDS 45.0%
GGTTCAAGCGTGGTTGTTTA+TGG + tig0040567:3881-3900 Msa1459950:CDS 45.0%
ATCTATGGCTTCCCAGGAAT+CGG - tig0040567:3966-3985 None:intergenic 45.0%
GCATATTTGCTCAGGCAAAG+GGG - tig0040567:3993-4012 None:intergenic 45.0%
CAACAGCAACCAGAAGATTC+CGG - tig0040567:4063-4082 None:intergenic 45.0%
! CTTTTGGATCATTGTGGAGG+AGG + tig0040567:2700-2719 Msa1459950:intron 45.0%
GATCATTGTGGAGGAGGAAT+TGG + tig0040567:2706-2725 Msa1459950:intron 45.0%
ACCACCGCTAACCTAAACTT+GGG - tig0040567:3075-3094 None:intergenic 45.0%
AACCACCGCTAACCTAAACT+TGG - tig0040567:3076-3095 None:intergenic 45.0%
TCAGGTAAGCCCGGAATTAA+GGG - tig0040567:3153-3172 None:intergenic 45.0%
ATCAGGTAAGCCCGGAATTA+AGG - tig0040567:3154-3173 None:intergenic 45.0%
AAGGACAAGGTTTGTCCTCA+TGG + tig0040567:3416-3435 Msa1459950:CDS 45.0%
GAAACACACCGAAAACCATG+AGG - tig0040567:3434-3453 None:intergenic 45.0%
GGTAATCTTTACGTATGCGG+TGG + tig0040567:3467-3486 Msa1459950:CDS 45.0%
!!! GCTAGGTCATTTTTTGCCAG+TGG + tig0040567:3581-3600 Msa1459950:CDS 45.0%
TTTGCCAGTGGAGTAATCGA+TGG + tig0040567:3593-3612 Msa1459950:CDS 45.0%
TTGCCAGTGGAGTAATCGAT+GGG + tig0040567:3594-3613 Msa1459950:CDS 45.0%
ATGGGATGGTTTATGCAGCT+GGG + tig0040567:3612-3631 Msa1459950:CDS 45.0%
TTATGAGCTGGATTCAGCTG+AGG + tig0040567:3652-3671 Msa1459950:CDS 45.0%
TAGATCCGATTAGCGGGAAT+TGG + tig0040567:3678-3697 Msa1459950:CDS 45.0%
TGCCAACATGGGAACCAATA+TGG + tig0040567:3709-3728 Msa1459950:CDS 45.0%
!! TGCCATATTGGTTCCCATGT+TGG - tig0040567:3714-3733 None:intergenic 45.0%
GTTCAGAACTGCAGCATCAT+AGG - tig0040567:3738-3757 None:intergenic 45.0%
!! ATGATGCTGCAGTTCTGAAC+GGG + tig0040567:3738-3757 Msa1459950:CDS 45.0%
GGGAAACTGCTTGTAACAGA+AGG + tig0040567:3758-3777 Msa1459950:CDS 45.0%
TTATGTCTCTCCTAGAGGAC+AGG + tig0040567:3796-3815 Msa1459950:CDS 45.0%
!! GTTTCCCAGCTATTGGTTCT+CGG - tig0040567:3830-3849 None:intergenic 45.0%
AGCCATAGTTTCCCAGCTAT+TGG - tig0040567:3837-3856 None:intergenic 45.0%
ATGGCTGTTGGACTTAGAGA+AGG + tig0040567:3851-3870 Msa1459950:CDS 45.0%
TGGCTGTTGGACTTAGAGAA+GGG + tig0040567:3852-3871 Msa1459950:CDS 45.0%
GGTTCAAGCGTGGTTGTTTA+TGG + tig0040567:3881-3900 Msa1459950:CDS 45.0%
ATCTATGGCTTCCCAGGAAT+CGG - tig0040567:3966-3985 None:intergenic 45.0%
GCATATTTGCTCAGGCAAAG+GGG - tig0040567:3993-4012 None:intergenic 45.0%
CAACAGCAACCAGAAGATTC+CGG - tig0040567:4063-4082 None:intergenic 45.0%
! GGATCACCTAGCTTGTGAAC+CGG - tig0040567:3036-3055 None:intergenic 50.0%
! TCCCAAGTTTAGGTTAGCGG+TGG + tig0040567:3071-3090 Msa1459950:CDS 50.0%
GCAACATCATCAGGTAAGCC+CGG - tig0040567:3162-3181 None:intergenic 50.0%
!! TGTCCTTGCAAGGCATTGCA+GGG - tig0040567:3403-3422 None:intergenic 50.0%
!! TTGTCCTTGCAAGGCATTGC+AGG - tig0040567:3404-3423 None:intergenic 50.0%
TGCAATGCCTTGCAAGGACA+AGG + tig0040567:3403-3422 Msa1459950:CDS 50.0%
GGACAAACCTTGTCCTTGCA+AGG - tig0040567:3413-3432 None:intergenic 50.0%
TGTGTTTCGATGCCTCACGA+TGG + tig0040567:3446-3465 Msa1459950:CDS 50.0%
TCTTTACGTATGCGGTGGCA+TGG + tig0040567:3472-3491 Msa1459950:CDS 50.0%
! CGTGGATTGTCCTCTTGACT+TGG + tig0040567:3502-3521 Msa1459950:CDS 50.0%
! CATCCCATCGATTACTCCAC+TGG - tig0040567:3600-3619 None:intergenic 50.0%
CAGTGGAGTAATCGATGGGA+TGG + tig0040567:3598-3617 Msa1459950:CDS 50.0%
GATGGGATGGTTTATGCAGC+TGG + tig0040567:3611-3630 Msa1459950:CDS 50.0%
TGGGATGGTTTATGCAGCTG+GGG + tig0040567:3613-3632 Msa1459950:CDS 50.0%
ACGATCCGAGAACCAATAGC+TGG + tig0040567:3822-3841 Msa1459950:CDS 50.0%
CGATCCGAGAACCAATAGCT+GGG + tig0040567:3823-3842 Msa1459950:CDS 50.0%
AGCTGGGAAACTATGGCTGT+TGG + tig0040567:3839-3858 Msa1459950:CDS 50.0%
CTGTTGGACTTAGAGAAGGG+TGG + tig0040567:3855-3874 Msa1459950:CDS 50.0%
! ATAACCAGGAAGCCGATTCC+TGG + tig0040567:3951-3970 Msa1459950:CDS 50.0%
! TAACCAGGAAGCCGATTCCT+GGG + tig0040567:3952-3971 Msa1459950:CDS 50.0%
GATTCCTGGGAAGCCATAGA+TGG + tig0040567:3965-3984 Msa1459950:CDS 50.0%
! CGGAATCTTCTGGTTGCTGT+TGG + tig0040567:4061-4080 Msa1459950:CDS 50.0%
! GGATCACCTAGCTTGTGAAC+CGG - tig0040567:3036-3055 None:intergenic 50.0%
! TCCCAAGTTTAGGTTAGCGG+TGG + tig0040567:3071-3090 Msa1459950:CDS 50.0%
GCAACATCATCAGGTAAGCC+CGG - tig0040567:3162-3181 None:intergenic 50.0%
!! TGTCCTTGCAAGGCATTGCA+GGG - tig0040567:3403-3422 None:intergenic 50.0%
!! TTGTCCTTGCAAGGCATTGC+AGG - tig0040567:3404-3423 None:intergenic 50.0%
TGCAATGCCTTGCAAGGACA+AGG + tig0040567:3403-3422 Msa1459950:CDS 50.0%
GGACAAACCTTGTCCTTGCA+AGG - tig0040567:3413-3432 None:intergenic 50.0%
TGTGTTTCGATGCCTCACGA+TGG + tig0040567:3446-3465 Msa1459950:CDS 50.0%
TCTTTACGTATGCGGTGGCA+TGG + tig0040567:3472-3491 Msa1459950:CDS 50.0%
! CGTGGATTGTCCTCTTGACT+TGG + tig0040567:3502-3521 Msa1459950:CDS 50.0%
! CATCCCATCGATTACTCCAC+TGG - tig0040567:3600-3619 None:intergenic 50.0%
CAGTGGAGTAATCGATGGGA+TGG + tig0040567:3598-3617 Msa1459950:CDS 50.0%
GATGGGATGGTTTATGCAGC+TGG + tig0040567:3611-3630 Msa1459950:CDS 50.0%
TGGGATGGTTTATGCAGCTG+GGG + tig0040567:3613-3632 Msa1459950:CDS 50.0%
ACGATCCGAGAACCAATAGC+TGG + tig0040567:3822-3841 Msa1459950:CDS 50.0%
CGATCCGAGAACCAATAGCT+GGG + tig0040567:3823-3842 Msa1459950:CDS 50.0%
AGCTGGGAAACTATGGCTGT+TGG + tig0040567:3839-3858 Msa1459950:CDS 50.0%
CTGTTGGACTTAGAGAAGGG+TGG + tig0040567:3855-3874 Msa1459950:CDS 50.0%
! ATAACCAGGAAGCCGATTCC+TGG + tig0040567:3951-3970 Msa1459950:CDS 50.0%
! TAACCAGGAAGCCGATTCCT+GGG + tig0040567:3952-3971 Msa1459950:CDS 50.0%
GATTCCTGGGAAGCCATAGA+TGG + tig0040567:3965-3984 Msa1459950:CDS 50.0%
! CGGAATCTTCTGGTTGCTGT+TGG + tig0040567:4061-4080 Msa1459950:CDS 50.0%
!! CAAGCACCGGTTCACAAGCT+AGG + tig0040567:3027-3046 Msa1459950:CDS 55.0%
!! CTTGCAAGGCATTGCAGGGA+TGG - tig0040567:3399-3418 None:intergenic 55.0%
CATCCCTGCAATGCCTTGCA+AGG + tig0040567:3397-3416 Msa1459950:CDS 55.0%
GGGATGGTTTATGCAGCTGG+GGG + tig0040567:3614-3633 Msa1459950:CDS 55.0%
GGATGGTTTATGCAGCTGGG+GGG + tig0040567:3615-3634 Msa1459950:CDS 55.0%
TTGGCGCGCTATTGCCAACA+TGG + tig0040567:3697-3716 Msa1459950:CDS 55.0%
TGGCGCGCTATTGCCAACAT+GGG + tig0040567:3698-3717 Msa1459950:CDS 55.0%
GGATCGTAGACCTGTCCTCT+AGG - tig0040567:3809-3828 None:intergenic 55.0%
GGACTTAGAGAAGGGTGGAC+TGG + tig0040567:3860-3879 Msa1459950:CDS 55.0%
AGGCAAAGGGGAGCCATCTA+TGG - tig0040567:3981-4000 None:intergenic 55.0%
TGTCGTAGGCCGGAATCTTC+TGG + tig0040567:4051-4070 Msa1459950:CDS 55.0%
!! CAAGCACCGGTTCACAAGCT+AGG + tig0040567:3027-3046 Msa1459950:CDS 55.0%
!! CTTGCAAGGCATTGCAGGGA+TGG - tig0040567:3399-3418 None:intergenic 55.0%
CATCCCTGCAATGCCTTGCA+AGG + tig0040567:3397-3416 Msa1459950:CDS 55.0%
GGGATGGTTTATGCAGCTGG+GGG + tig0040567:3614-3633 Msa1459950:CDS 55.0%
GGATGGTTTATGCAGCTGGG+GGG + tig0040567:3615-3634 Msa1459950:CDS 55.0%
TTGGCGCGCTATTGCCAACA+TGG + tig0040567:3697-3716 Msa1459950:CDS 55.0%
TGGCGCGCTATTGCCAACAT+GGG + tig0040567:3698-3717 Msa1459950:CDS 55.0%
GGATCGTAGACCTGTCCTCT+AGG - tig0040567:3809-3828 None:intergenic 55.0%
GGACTTAGAGAAGGGTGGAC+TGG + tig0040567:3860-3879 Msa1459950:CDS 55.0%
AGGCAAAGGGGAGCCATCTA+TGG - tig0040567:3981-4000 None:intergenic 55.0%
TGTCGTAGGCCGGAATCTTC+TGG + tig0040567:4051-4070 Msa1459950:CDS 55.0%
CCTCTTGCAGACAGCCCTAC+AGG - tig0040567:3226-3245 None:intergenic 60.0%
CCTGTAGGGCTGTCTGCAAG+AGG + tig0040567:3223-3242 Msa1459950:intron 60.0%
GTAGGGCTGTCTGCAAGAGG+TGG + tig0040567:3226-3245 Msa1459950:intron 60.0%
GCGCGCCAATTCCCGCTAAT+CGG - tig0040567:3686-3705 None:intergenic 60.0%
!! AGGGTGGACTGGTTCAAGCG+TGG + tig0040567:3871-3890 Msa1459950:CDS 60.0%
! CTTCCCAGGAATCGGCTTCC+TGG - tig0040567:3958-3977 None:intergenic 60.0%
GGAGCCATCTATGGCTTCCC+AGG - tig0040567:3972-3991 None:intergenic 60.0%
CCTCTTGCAGACAGCCCTAC+AGG - tig0040567:3226-3245 None:intergenic 60.0%
CCTGTAGGGCTGTCTGCAAG+AGG + tig0040567:3223-3242 Msa1459950:intron 60.0%
GTAGGGCTGTCTGCAAGAGG+TGG + tig0040567:3226-3245 Msa1459950:intron 60.0%
GCGCGCCAATTCCCGCTAAT+CGG - tig0040567:3686-3705 None:intergenic 60.0%
!! AGGGTGGACTGGTTCAAGCG+TGG + tig0040567:3871-3890 Msa1459950:CDS 60.0%
! CTTCCCAGGAATCGGCTTCC+TGG - tig0040567:3958-3977 None:intergenic 60.0%
GGAGCCATCTATGGCTTCCC+AGG - tig0040567:3972-3991 None:intergenic 60.0%
CGGTGGCATGGTCTCTGACG+TGG + tig0040567:3484-3503 Msa1459950:CDS 65.0%
CGGTGGCATGGTCTCTGACG+TGG + tig0040567:3484-3503 Msa1459950:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0040567 gene 2039 4153 2039 ID=Msa1459950;Name=Msa1459950
tig0040567 mRNA 2039 4153 2039 ID=Msa1459950-mRNA-1;Parent=Msa1459950;Name=Msa1459950-mRNA-1;_AED=0.19;_eAED=0.20;_QI=0|0|0|0.8|1|1|5|0|370
tig0040567 exon 2039 2047 2039 ID=Msa1459950-mRNA-1:exon:22492;Parent=Msa1459950-mRNA-1
tig0040567 exon 2756 2761 2756 ID=Msa1459950-mRNA-1:exon:22493;Parent=Msa1459950-mRNA-1
tig0040567 exon 2960 2966 2960 ID=Msa1459950-mRNA-1:exon:22494;Parent=Msa1459950-mRNA-1
tig0040567 exon 2980 3206 2980 ID=Msa1459950-mRNA-1:exon:22495;Parent=Msa1459950-mRNA-1
tig0040567 exon 3290 4153 3290 ID=Msa1459950-mRNA-1:exon:22496;Parent=Msa1459950-mRNA-1
tig0040567 CDS 2039 2047 2039 ID=Msa1459950-mRNA-1:cds;Parent=Msa1459950-mRNA-1
tig0040567 CDS 2756 2761 2756 ID=Msa1459950-mRNA-1:cds;Parent=Msa1459950-mRNA-1
tig0040567 CDS 2960 2966 2960 ID=Msa1459950-mRNA-1:cds;Parent=Msa1459950-mRNA-1
tig0040567 CDS 2980 3206 2980 ID=Msa1459950-mRNA-1:cds;Parent=Msa1459950-mRNA-1
tig0040567 CDS 3290 4153 3290 ID=Msa1459950-mRNA-1:cds;Parent=Msa1459950-mRNA-1
Gene Sequence

>Msa1459950

ATGCGCGTGGATTTGGGTTTAGATTTAACGATAAAGATAAGGATGCAGCGTGTTAGATTTTCGTCTCAACAAGCACCGGTTCACAAGCTAGGTGATCCTCAAATGACACTATCTCCCAAGTTTAGGTTAGCGGTGGTTCAATCTAACTTGATGAGTCCGATGCCAGAGTTAGATCATTCTCTAAGAGAAGAACCCTTAATTCCGGGCTTACCTGATGATGTTGCTCTTAATTGTCTTCTTCGTCTTCCGGAAGCAAATGGTTTCAAAGATCCTTGGCTTTTTGTATTTGCATATCATAAGTGTACTGGAAAGATTCAATGGCAGGTTTTTGATCTAACTCACTTTTCTTGGCACACCATCCCTGCAATGCCTTGCAAGGACAAGGTTTGTCCTCATGGTTTTCGGTGTGTTTCGATGCCTCACGATGGTAATCTTTACGTATGCGGTGGCATGGTCTCTGACGTGGATTGTCCTCTTGACTTGGTGTTGAAATATGAGATCACGAAAAATCGTTGGACCGTGATGAATCGAATGATCAGTGCTAGGTCATTTTTTGCCAGTGGAGTAATCGATGGGATGGTTTATGCAGCTGGGGGGAATAGTACTGATCTTTATGAGCTGGATTCAGCTGAGGTATTAGATCCGATTAGCGGGAATTGGCGCGCTATTGCCAACATGGGAACCAATATGGCATCCTATGATGCTGCAGTTCTGAACGGGAAACTGCTTGTAACAGAAGGATGGTTATGGCCTTTTTATGTCTCTCCTAGAGGACAGGTCTACGATCCGAGAACCAATAGCTGGGAAACTATGGCTGTTGGACTTAGAGAAGGGTGGACTGGTTCAAGCGTGGTTGTTTATGGCCACTTATTTGTTGTTTCTGAGCTCGAAAGAATGAAGCTTAAGGTTTATAACCAGGAAGCCGATTCCTGGGAAGCCATAGATGGCTCCCCTTTGCCTGAGCAAATATGCAAACCTTTTGCTGTGAATGCTTGTGATTGTCAAATTTATGTCGTAGGCCGGAATCTTCTGGTTGCTGTTGGTCATATCTCCATACTGAACCAAAAGAAAGTTGTGAGGGGAAATGGAACTTCAGTGTTCAATGGCAAGTAA

Protein sequence

>Msa1459950

MRVDLGLDLTIKIRMQRVRFSSQQAPVHKLGDPQMTLSPKFRLAVVQSNLMSPMPELDHSLREEPLIPGLPDDVALNCLLRLPEANGFKDPWLFVFAYHKCTGKIQWQVFDLTHFSWHTIPAMPCKDKVCPHGFRCVSMPHDGNLYVCGGMVSDVDCPLDLVLKYEITKNRWTVMNRMISARSFFASGVIDGMVYAAGGNSTDLYELDSAEVLDPISGNWRAIANMGTNMASYDAAVLNGKLLVTEGWLWPFYVSPRGQVYDPRTNSWETMAVGLREGWTGSSVVVYGHLFVVSELERMKLKVYNQEADSWEAIDGSPLPEQICKPFAVNACDCQIYVVGRNLLVAVGHISILNQKKVVRGNGTSVFNGK*