AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0057300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0057300 MtrunA17_Chr1g0147221 97.912 431 8 1 1 431 1 430 0.0 865
Msa0057300 MtrunA17_Chr3g0139441 75.765 425 98 2 1 424 1 421 0.0 664
Msa0057300 MtrunA17_Chr6g0485621 65.176 425 131 5 4 423 5 417 0.0 569
Msa0057300 MtrunA17_Chr1g0182991 61.353 414 157 3 19 431 1 412 0.0 521
Msa0057300 MtrunA17_Chr1g0169111 60.051 393 153 2 35 424 94 485 2.65e-178 507
Msa0057300 MtrunA17_Chr1g0148801 61.658 386 142 3 36 420 9 389 4.81e-176 498
Msa0057300 MtrunA17_Chr7g0262591 58.396 399 159 3 34 431 15 407 1.56e-174 494
Msa0057300 MtrunA17_Chr7g0262471 56.832 322 132 3 111 431 213 528 2.31e-128 381
Msa0057300 MtrunA17_Chr7g0268611 45.040 373 198 3 44 414 9 376 3.34e-117 347
Msa0057300 MtrunA17_Chr7g0268621 47.059 374 189 5 44 414 7 374 1.58e-114 340
Msa0057300 MtrunA17_Chr8g0350371 43.467 375 205 3 44 416 7 376 3.71e-114 339
Msa0057300 MtrunA17_Chr5g0412881 42.971 377 208 3 44 418 7 378 1.93e-112 335
Msa0057300 MtrunA17_Chr3g0125711 43.223 391 212 5 44 431 8 391 4.78e-107 322
Msa0057300 MtrunA17_Chr3g0125691 43.316 374 205 3 44 415 8 376 5.16e-107 322
Msa0057300 MtrunA17_Chr3g0125701 43.316 374 205 3 44 415 8 376 8.63e-107 321
Msa0057300 MtrunA17_Chr4g0025641 42.714 199 113 1 44 241 17 215 1.05e-50 171
Msa0057300 MtrunA17_Chr4g0025651 41.209 182 103 3 249 429 4 182 3.17e-42 147
Msa0057300 MtrunA17_Chr3g0129991 36.975 119 74 1 101 218 1 119 4.44e-26 102
Msa0057300 MtrunA17_Chr3g0091441 24.251 367 171 12 45 373 15 312 9.68e-14 72.8
Msa0057300 MtrunA17_Chr8g0352461 24.880 209 129 6 45 227 6 212 1.66e-13 72.0
Msa0057300 MtrunA17_Chr2g0304721 25.403 248 142 11 45 252 7 251 5.90e-12 67.4
Msa0057300 MtrunA17_Chr2g0305211 24.576 236 137 11 45 242 7 239 9.00e-12 67.0
Msa0057300 MtrunA17_Chr2g0305231 24.576 236 137 11 45 242 7 239 9.00e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0057300 AT5G25620.2 66.667 420 125 4 6 423 7 413 0.0 570
Msa0057300 AT5G25620.1 66.667 420 125 4 6 423 7 413 0.0 570
Msa0057300 AT4G13260.1 65.860 413 126 3 4 415 3 401 0.0 557
Msa0057300 AT1G04610.1 60.000 395 153 2 34 424 28 421 1.17e-178 506
Msa0057300 AT4G28720.1 56.867 415 174 3 19 429 1 414 4.21e-177 501
Msa0057300 AT1G04180.1 58.354 413 169 3 19 430 1 411 6.76e-175 496
Msa0057300 AT5G43890.1 58.191 409 167 3 19 424 1 408 1.06e-174 495
Msa0057300 AT2G33230.1 58.753 417 156 3 22 424 1 415 3.26e-173 492
Msa0057300 AT5G11320.1 58.793 381 151 2 38 418 12 386 3.05e-165 471
Msa0057300 AT4G32540.1 56.313 396 167 3 29 423 7 397 2.37e-162 464
Msa0057300 AT4G32540.2 56.281 398 166 4 29 423 7 399 8.34e-161 460
Msa0057300 AT4G13260.2 64.396 323 100 3 4 325 3 311 3.40e-147 421
Msa0057300 AT5G11320.2 58.716 327 130 1 38 364 12 333 1.36e-140 406
Msa0057300 AT4G13260.3 67.010 291 95 1 126 415 8 298 9.12e-138 397
Msa0057300 AT1G21430.1 48.267 375 184 5 44 415 10 377 1.28e-119 354
Msa0057300 AT1G48910.1 44.772 373 199 3 44 414 6 373 4.86e-116 345
Msa0057300 AT5G61290.1 27.679 224 115 7 45 228 18 234 8.82e-14 73.6
Msa0057300 AT5G07800.1 26.818 220 122 7 45 227 18 235 3.55e-13 71.6
Msa0057300 AT1G62560.2 22.511 231 141 5 45 246 15 236 5.97e-13 70.5
Msa0057300 AT1G62560.1 22.511 231 141 5 45 246 15 236 6.33e-13 70.9
Msa0057300 AT5G45180.1 24.148 352 200 14 45 355 15 340 9.72e-13 70.1
Msa0057300 AT1G65860.1 21.834 229 144 4 45 246 15 235 6.91e-12 67.4
Msa0057300 AT1G12200.2 24.900 249 141 9 59 270 30 269 9.75e-12 66.6
Msa0057300 AT1G12200.1 25.523 239 132 9 59 260 30 259 1.20e-11 66.6

Find 150 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAATATTGAGTTCTTTA+TGG 0.107363 1_2:-13275107 None:intergenic
GCAACAATTCATAGAGTATT+TGG 0.149405 1_2:+13275615 Msa0057300:CDS
CTTCAAGTGATAGATGTTTA+TGG 0.160401 1_2:+13275371 Msa0057300:CDS
AGTTTGTGAGCTTCCTTTAA+TGG 0.176443 1_2:+13275558 Msa0057300:CDS
ATAATTGAATCCACGAATTA+AGG 0.208791 1_2:-13280251 None:intergenic
CAATGGAGGAGGGTTATTTA+AGG 0.210846 1_2:-13274881 None:intergenic
TTGAAAATATGTAATGAAAA+AGG 0.217260 1_2:-13275253 None:intergenic
ATTGAAGGAGTTGATGAATT+TGG 0.225886 1_2:+13275823 Msa0057300:CDS
TGATTATTGTTTAATTATTT+AGG 0.229654 1_2:+13280075 Msa0057300:exon
AATTAATGTTATTACGTAAA+TGG 0.233521 1_2:+13280101 Msa0057300:three_prime_UTR
TATGGTTCGTTGGTTGGTTT+TGG 0.255596 1_2:-13275089 None:intergenic
TGAGGATTGGTGGCAACTTT+TGG 0.257070 1_2:-13274990 None:intergenic
ATGAATTTGGTGGTAGTATT+AGG 0.259873 1_2:+13275836 Msa0057300:CDS
ATGCTGGGAAAATCAACTTT+TGG 0.272060 1_2:+13277988 Msa0057300:CDS
GGAAGCTCACAAACTTGTTT+TGG 0.287110 1_2:-13275550 None:intergenic
ACAAAACAAACATTCATTCT+TGG 0.293492 1_2:-13280484 None:intergenic
GGTTGAGTTTCAAGAGAAAA+AGG 0.299604 1_2:-13275035 None:intergenic
GGTGAGGAGTGAGGGGAAGG+CGG 0.303591 1_2:+13275726 Msa0057300:CDS
GTGGTTGGATGTGGAAATTC+AGG 0.305649 1_2:+13275910 Msa0057300:CDS
TCTATGAATTGTTGCTTTGT+TGG 0.308851 1_2:-13275607 None:intergenic
CCACTAGGGAATTCCATTAA+AGG 0.311291 1_2:-13275571 None:intergenic
TTCAGGTATGGAAGTTTGTT+TGG 0.318132 1_2:+13275927 Msa0057300:CDS
ATAACTTACCTTTAACCAAT+AGG 0.321026 1_2:-13279178 None:intergenic
AATTGCATTGTGGGCTGATC+AGG 0.326270 1_2:+13280452 Msa0057300:three_prime_UTR
CGGTTTGGTTCGGCCTCGGT+TGG 0.332146 1_2:+13278107 Msa0057300:CDS
TAATGTACCCTATTGGTTAA+AGG 0.336947 1_2:+13279170 Msa0057300:CDS
GTTTAGAGGGAAGAAAGTTT+TGG 0.342078 1_2:+13275888 Msa0057300:CDS
GTGAGGAGTGAGGGGAAGGC+GGG 0.346356 1_2:+13275727 Msa0057300:CDS
TTTCACCTTTCCATCCATTA+GGG 0.348305 1_2:-13279921 None:intergenic
AATGGATGGAAAGGTGAAAA+TGG 0.349533 1_2:+13279925 Msa0057300:CDS
ATAGTAGGAGCAGGACCTTC+AGG 0.355072 1_2:+13275409 Msa0057300:CDS
GATAGATGTTTATGGATTCC+AGG 0.359227 1_2:+13275379 Msa0057300:CDS
TAACTTACCTTTAACCAATA+GGG 0.359812 1_2:-13279177 None:intergenic
GCAGCATATCTAAAACAAAA+AGG 0.363705 1_2:+13275442 Msa0057300:CDS
CCAAACCTTCTTTAGCTAAG+AGG 0.370654 1_2:+13274966 Msa0057300:five_prime_UTR
TGTTGCTTTGTTGGATATGT+TGG 0.373958 1_2:-13275598 None:intergenic
CCTCTTAGCTAAAGAAGGTT+TGG 0.377834 1_2:-13274966 None:intergenic
CCATTAGGGAATGGCTTCCT+AGG 0.378690 1_2:-13279907 None:intergenic
AGTGGAGTTTAAGAATGAAT+TGG 0.382785 1_2:-13275150 None:intergenic
AATGGAGGAGGGTTATTTAA+GGG 0.390482 1_2:-13274880 None:intergenic
GGTTCGGTTTGGTTCGGCCT+CGG 0.399694 1_2:+13278103 Msa0057300:CDS
ACAAAAGTAATGTACCCTAT+TGG 0.401012 1_2:+13279163 Msa0057300:CDS
GACGCCATCGTATTGGCAAC+TGG 0.408426 1_2:+13279138 Msa0057300:CDS
GGATAAGGGTATGTTCTCTA+AGG 0.417839 1_2:+13279873 Msa0057300:intron
CCTAGGAAGCCATTCCCTAA+TGG 0.421132 1_2:+13279907 Msa0057300:CDS
CAATATCACATATTCTCAAA+AGG 0.421470 1_2:-13280277 None:intergenic
TTCACTAAACGTGGACTACT+TGG 0.424605 1_2:+13279964 Msa0057300:CDS
GAGGGTGAGGAGTGAGGGGA+AGG 0.436723 1_2:+13275723 Msa0057300:CDS
GAATCTCTAACCACAATAGA+AGG 0.439167 1_2:-13275973 None:intergenic
CAATACAGAACGGTTCGGTT+TGG 0.439433 1_2:+13278092 Msa0057300:CDS
TTCCCAGCATATCTCTTGGC+AGG 0.440777 1_2:-13277975 None:intergenic
GTTTGACTTGCTATAGAGAA+AGG 0.444621 1_2:+13280412 Msa0057300:three_prime_UTR
GTTCTTTATGGTTCGTTGGT+TGG 0.450667 1_2:-13275095 None:intergenic
CAAATTGTATAGCTTCACTA+TGG 0.453940 1_2:+13275491 Msa0057300:CDS
CATCCTGCCAAGAGATATGC+TGG 0.456200 1_2:+13277972 Msa0057300:CDS
TTGGTGGTGTCCTTAATTCG+TGG 0.460258 1_2:+13280241 Msa0057300:three_prime_UTR
TGAGAAAATGTTTCCTTTGG+TGG 0.461264 1_2:+13280225 Msa0057300:three_prime_UTR
GAGTGAGGGGAAGGCGGGAA+TGG 0.461670 1_2:+13275732 Msa0057300:CDS
ATATGTGCATAATGTTATCA+AGG 0.461773 1_2:+13280152 Msa0057300:three_prime_UTR
TTGGCCCTCTTAGCTAAAGA+AGG 0.469696 1_2:-13274971 None:intergenic
CGGTGGTTGATCGTTGCAAC+CGG 0.474729 1_2:+13275772 Msa0057300:CDS
ATGGTATATGTGCAGGATAA+GGG 0.476167 1_2:+13279859 Msa0057300:intron
TCTTGTTCGGTGTCAGACCT+TGG 0.479794 1_2:+13275201 Msa0057300:five_prime_UTR
CAGAACGGTTCGGTTTGGTT+CGG 0.479807 1_2:+13278097 Msa0057300:CDS
TGGTGAGAAAATGTTTCCTT+TGG 0.480626 1_2:+13280222 Msa0057300:three_prime_UTR
GAATGCTGAGGCGGTTGTAC+CGG 0.482930 1_2:+13275798 Msa0057300:CDS
ACAAGAAAATAGAGAGCAAA+GGG 0.483050 1_2:-13275184 None:intergenic
GGTCCTGCTCCTACTATCAA+TGG 0.486209 1_2:-13275403 None:intergenic
AACATTATGCACATATGTAA+TGG 0.486939 1_2:-13280145 None:intergenic
AAAAGTGGTGAAGAGTTTAG+AGG 0.487823 1_2:+13275874 Msa0057300:CDS
AAAATTTCGATATTAGGCCT+TGG 0.488183 1_2:+13275650 Msa0057300:CDS
TTTGACTTGCTATAGAGAAA+GGG 0.488459 1_2:+13280413 Msa0057300:three_prime_UTR
TGTCCATGTGGTTGCTAAAG+TGG 0.490674 1_2:+13278013 Msa0057300:CDS
CTGAAGATATTGAACGGTGT+TGG 0.492435 1_2:+13280013 Msa0057300:CDS
CTTGGCAATACAGAACGGTT+CGG 0.494535 1_2:+13278087 Msa0057300:CDS
GAAAATGGCCTCTTTGCTGT+TGG 0.494708 1_2:+13279940 Msa0057300:CDS
TGGTTACCGAGTTTGTTTGT+CGG 0.495604 1_2:+13275752 Msa0057300:CDS
TGGCAAGGGCACCCACATCT+AGG 0.496006 1_2:-13278170 None:intergenic
AAAGTGGTGAAGAGTTTAGA+GGG 0.496476 1_2:+13275875 Msa0057300:CDS
AAAGTGGTTACCCGTGCAAC+TGG 0.496540 1_2:+13278029 Msa0057300:CDS
TGTTATTACGTAAATGGTGA+TGG 0.498202 1_2:+13280107 Msa0057300:three_prime_UTR
CCTTTCCATCCATTAGGGAA+TGG 0.499153 1_2:-13279916 None:intergenic
TTGAGTTCTTTATGGTTCGT+TGG 0.506551 1_2:-13275099 None:intergenic
GATCTTTCTAGTATTAAACT+TGG 0.510703 1_2:-13275469 None:intergenic
GGTTTGGTTCGGCCTCGGTT+GGG 0.511085 1_2:+13278108 Msa0057300:CDS
TCATCAACTCCTTCAATCTC+CGG 0.512367 1_2:-13275817 None:intergenic
CAAACCTTCTTTAGCTAAGA+GGG 0.521997 1_2:+13274967 Msa0057300:five_prime_UTR
AGTTATCTAAGAGAATTAGA+AGG 0.522034 1_2:+13275283 Msa0057300:CDS
GCTGAGTTTGATGCTACACT+TGG 0.526718 1_2:+13275694 Msa0057300:CDS
TTTGGAGGGTGAGGAGTGAG+GGG 0.529144 1_2:+13275719 Msa0057300:CDS
GGTATGTTCTCTAAGGAAGA+TGG 0.529812 1_2:+13279880 Msa0057300:CDS
TGTTTGAAATTGAAAACTGC+AGG 0.531962 1_2:-13275056 None:intergenic
ATTCCAGGTCCATTGATAGT+AGG 0.534394 1_2:+13275394 Msa0057300:CDS
AACCGCCTCAGCATTCTCTC+CGG 0.535999 1_2:-13275791 None:intergenic
ATAGCAAGTCAAACCTACAT+AGG 0.536740 1_2:-13280403 None:intergenic
CATACTAGTTTGTATAAAAG+TGG 0.538558 1_2:+13275859 Msa0057300:CDS
GAGGAGGGTTATTTAAGGGA+AGG 0.542857 1_2:-13274876 None:intergenic
ATGTAATCCACCAGTTGCAC+GGG 0.546866 1_2:-13278039 None:intergenic
TGATGCTGCTCCTTCTATTG+TGG 0.549061 1_2:+13275963 Msa0057300:CDS
TGGACTACTTGGTGCATCCA+TGG 0.549422 1_2:+13279975 Msa0057300:CDS
ACATCCTTCTCACTGTGTCA+TGG 0.550548 1_2:+13278058 Msa0057300:CDS
TCCCTCGTTCAGGTACGTCC+AGG 0.553289 1_2:+13279057 Msa0057300:intron
GGATATGTTGGAAAACCACT+AGG 0.555382 1_2:-13275586 None:intergenic
AACAAGAAAATAGAGAGCAA+AGG 0.559557 1_2:-13275185 None:intergenic
GATTAAAAGAGGAGACATCA+AGG 0.563954 1_2:+13278194 Msa0057300:CDS
CCATTCCCTAATGGATGGAA+AGG 0.565023 1_2:+13279916 Msa0057300:CDS
GCCCTTGCCAAGATTAAAAG+AGG 0.565947 1_2:+13278183 Msa0057300:CDS
CCTTTAATGGAATTCCCTAG+TGG 0.567347 1_2:+13275571 Msa0057300:CDS
GCGGTTGTACCGGAGATTGA+AGG 0.568267 1_2:+13275808 Msa0057300:CDS
CAGGCATCAAGAGGTTAAAA+CGG 0.572356 1_2:+13279076 Msa0057300:CDS
GGAAGCCATTCCCTAATGGA+TGG 0.574345 1_2:+13279911 Msa0057300:CDS
GCTGTTGGTTTCACTAAACG+TGG 0.576427 1_2:+13279955 Msa0057300:CDS
GAAGGAGTTGATGAATTTGG+TGG 0.576519 1_2:+13275826 Msa0057300:CDS
AAAGACACCGGTCCTAGATG+TGG 0.578940 1_2:+13278158 Msa0057300:CDS
GGTCCATTGATAGTAGGAGC+AGG 0.584095 1_2:+13275400 Msa0057300:CDS
GATGTAATCCACCAGTTGCA+CGG 0.587259 1_2:-13278040 None:intergenic
GCTGCTACTGCTAGTCCTGA+AGG 0.587967 1_2:-13275424 None:intergenic
GTGGTTACCCGTGCAACTGG+TGG 0.590830 1_2:+13278032 Msa0057300:CDS
AGGGCACCCACATCTAGGAC+CGG 0.591712 1_2:-13278165 None:intergenic
TACAGAGTGGAATTTGCTGA+TGG 0.592027 1_2:+13279099 Msa0057300:CDS
TTTGACGAATCGAAGCGCCA+AGG 0.598943 1_2:-13275218 None:intergenic
CTAAGGAAGATGGATACCCT+AGG 0.600641 1_2:+13279890 Msa0057300:CDS
CATTAGGGAATGGCTTCCTA+GGG 0.603860 1_2:-13279906 None:intergenic
TGAACGGTGTTGGAAAGTTG+AGG 0.604949 1_2:+13280023 Msa0057300:CDS
GCTCCTACTATCAATGGACC+TGG 0.607612 1_2:-13275397 None:intergenic
TATGTGCATAATGTTATCAA+GGG 0.608213 1_2:+13280153 Msa0057300:three_prime_UTR
TATTACGTAAATGGTGATGG+AGG 0.615148 1_2:+13280110 Msa0057300:three_prime_UTR
TGGATGTGGAAATTCAGGTA+TGG 0.622494 1_2:+13275915 Msa0057300:CDS
ACTGTGTCATGGTTAATGCT+TGG 0.622906 1_2:+13278069 Msa0057300:CDS
CGAATTAAGGACACCACCAA+AGG 0.627049 1_2:-13280238 None:intergenic
AGGTACGTCCAGGCATCAAG+AGG 0.629400 1_2:+13279067 Msa0057300:intron
TAATGCTTGGCAATACAGAA+CGG 0.631117 1_2:+13278082 Msa0057300:CDS
TAGTGAAACCAACAGCAAAG+AGG 0.634282 1_2:-13279948 None:intergenic
AAGACACCGGTCCTAGATGT+GGG 0.638855 1_2:+13278159 Msa0057300:CDS
ATGAAGACGAAGACGATCGT+AGG 0.641325 1_2:-13275524 None:intergenic
GTAACCAGTTGCCAATACGA+TGG 0.642598 1_2:-13279142 None:intergenic
TTACCGAGTTTGTTTGTCGG+TGG 0.653194 1_2:+13275755 Msa0057300:CDS
TTAACCATGACACAGTGAGA+AGG 0.654806 1_2:-13278062 None:intergenic
GAGGTTAAAACGGTACAGAG+TGG 0.654866 1_2:+13279086 Msa0057300:CDS
CAACCACCGACAAACAAACT+CGG 0.654999 1_2:-13275758 None:intergenic
ATATAGCTGAAGATATTGAA+CGG 0.658373 1_2:+13280007 Msa0057300:CDS
GATATGTTGGAAAACCACTA+GGG 0.658620 1_2:-13275585 None:intergenic
AACCGGAGAGAATGCTGAGG+CGG 0.661182 1_2:+13275789 Msa0057300:CDS
GCATAATGTTATCAAGGGTG+TGG 0.661386 1_2:+13280158 Msa0057300:three_prime_UTR
TAACCACTTTAGCAACCACA+TGG 0.668567 1_2:-13278016 None:intergenic
AAAACTGTCTGGAAAGACAC+CGG 0.678715 1_2:+13278146 Msa0057300:CDS
AGTTCTAGAGGACCCAACCG+AGG 0.681521 1_2:-13278120 None:intergenic
ATCCTGCCAAGAGATATGCT+GGG 0.697559 1_2:+13277973 Msa0057300:CDS
ATAACTGTCTCATTGAACCA+AGG 0.702457 1_2:-13275667 None:intergenic
TGCAACCGGAGAGAATGCTG+AGG 0.712718 1_2:+13275786 Msa0057300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAATTATA+CGG + chr1_2:13279432-13279451 Msa0057300:intron 0.0%
!! AAAAAAAAAAAAAGAGAAAA+AGG - chr1_2:13276829-13276848 None:intergenic 10.0%
!! ACATTATAAAATATTTACAT+TGG + chr1_2:13277417-13277436 Msa0057300:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG - chr1_2:13277812-13277831 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG - chr1_2:13277813-13277832 None:intergenic 10.0%
!!! AGATATTTTTAATAAATTGA+CGG + chr1_2:13278755-13278774 Msa0057300:intron 10.0%
!! TGATTATTGTTTAATTATTT+AGG + chr1_2:13280075-13280094 Msa0057300:exon 10.0%
!!! TTAGTTTATTAATTTTTTTG+TGG + chr1_2:13280333-13280352 Msa0057300:three_prime_UTR 10.0%
!! TTTAAATATTGAGTTCTTTA+TGG - chr1_2:13275110-13275129 None:intergenic 15.0%
!! TTGAAAATATGTAATGAAAA+AGG - chr1_2:13275256-13275275 None:intergenic 15.0%
!!! TTCATTACATATTTTCAAAA+TGG + chr1_2:13275258-13275277 Msa0057300:exon 15.0%
!!! ATCATTTTTTCTATGAATAA+AGG - chr1_2:13275325-13275344 None:intergenic 15.0%
!!! GTAACTAATTTTTTTTAAGA+AGG - chr1_2:13276389-13276408 None:intergenic 15.0%
!! TCTAATATAGCATATAAAAT+AGG + chr1_2:13276484-13276503 Msa0057300:intron 15.0%
!!! ATTCAAAAATACTTTTGAAA+TGG - chr1_2:13276567-13276586 None:intergenic 15.0%
!!! TGCTATTTTTCATATTATTA+AGG - chr1_2:13276972-13276991 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG - chr1_2:13277811-13277830 None:intergenic 15.0%
!! AATCAAATCATACTTTATTA+AGG + chr1_2:13278437-13278456 Msa0057300:intron 15.0%
!! AAAATTCTAAACAATGAAAA+CGG + chr1_2:13279227-13279246 Msa0057300:intron 15.0%
!!! AATGAAAATATGTTTTTACT+TGG + chr1_2:13279466-13279485 Msa0057300:intron 15.0%
!! AATAATACAAATAACTGAAA+TGG + chr1_2:13279840-13279859 Msa0057300:intron 15.0%
!! AATTAATGTTATTACGTAAA+TGG + chr1_2:13280101-13280120 Msa0057300:three_prime_UTR 15.0%
!!! TTTTTTTCTTTCCATTTTTA+TGG - chr1_2:13280197-13280216 None:intergenic 15.0%
!! ATGGAAAGAAAAAAAAAATA+TGG + chr1_2:13280202-13280221 Msa0057300:three_prime_UTR 15.0%
!!! TAATTTTTTTGTGGTTATTT+TGG + chr1_2:13280342-13280361 Msa0057300:three_prime_UTR 15.0%
!!! AATTTTTTTGTGGTTATTTT+GGG + chr1_2:13280343-13280362 Msa0057300:three_prime_UTR 15.0%
!! ATTCCAAAAATTTCGATATT+AGG + chr1_2:13275644-13275663 Msa0057300:CDS 20.0%
!! AGAAAGAAAAACAAAGTAAA+AGG - chr1_2:13276022-13276041 None:intergenic 20.0%
!!! GTATGTTTTGAATAAAAACA+GGG - chr1_2:13276260-13276279 None:intergenic 20.0%
!!! AGTATGTTTTGAATAAAAAC+AGG - chr1_2:13276261-13276280 None:intergenic 20.0%
!!! ATATTGAATTTTATGCTACA+AGG - chr1_2:13276319-13276338 None:intergenic 20.0%
!! AATTTCCATGTTTCTTAATT+AGG - chr1_2:13276357-13276376 None:intergenic 20.0%
!!! CATGATATTTCACTTTTTTT+GGG + chr1_2:13276620-13276639 Msa0057300:intron 20.0%
!! GAAAAATAGCACTTAAATTA+TGG + chr1_2:13276981-13277000 Msa0057300:intron 20.0%
!!! TATCTAACACTTAAAGATTT+TGG + chr1_2:13277124-13277143 Msa0057300:intron 20.0%
!!! ATCTAACACTTAAAGATTTT+GGG + chr1_2:13277125-13277144 Msa0057300:intron 20.0%
!! GTTGAAAATCTTTATGATAA+AGG + chr1_2:13277279-13277298 Msa0057300:intron 20.0%
!! ATCAAAAATCTTAAGATCTT+AGG - chr1_2:13277491-13277510 None:intergenic 20.0%
!!! AGTACTCTTTTTATAGAAAA+AGG + chr1_2:13277879-13277898 Msa0057300:intron 20.0%
!!! TTCGACATTAGTTTTAAATA+AGG + chr1_2:13278652-13278671 Msa0057300:intron 20.0%
!! CACAATCAAACAATTATTAT+AGG + chr1_2:13278694-13278713 Msa0057300:intron 20.0%
!! ATAGTAGTTAAATCTTTAGT+AGG + chr1_2:13278826-13278845 Msa0057300:intron 20.0%
!!! ATTTTTAAAGAGTGCATAAT+GGG - chr1_2:13279207-13279226 None:intergenic 20.0%
!!! TATTTTTAAAGAGTGCATAA+TGG - chr1_2:13279208-13279227 None:intergenic 20.0%
!!! AAGCTTTTTTATTTCGAATA+AGG + chr1_2:13279720-13279739 Msa0057300:intron 20.0%
!! TATTTCGAATAAGGAAAATA+CGG + chr1_2:13279729-13279748 Msa0057300:intron 20.0%
!!! ATTTTCAAAATTCAGATAGA+TGG - chr1_2:13279796-13279815 None:intergenic 20.0%
! AGTTATCTAAGAGAATTAGA+AGG + chr1_2:13275283-13275302 Msa0057300:CDS 25.0%
!! GATCTTTCTAGTATTAAACT+TGG - chr1_2:13275472-13275491 None:intergenic 25.0%
!! CATACTAGTTTGTATAAAAG+TGG + chr1_2:13275859-13275878 Msa0057300:CDS 25.0%
!!! CTTTTTTAACTTTTCCGTTT+CGG + chr1_2:13276044-13276063 Msa0057300:intron 25.0%
!!! ATGCTGATTTTCATAATCAT+AGG - chr1_2:13276182-13276201 None:intergenic 25.0%
! TATCTCCTAATTAAGAAACA+TGG + chr1_2:13276349-13276368 Msa0057300:intron 25.0%
! TAAGAAACATGGAAATTTGT+CGG + chr1_2:13276360-13276379 Msa0057300:intron 25.0%
! AAAACAAAACACAACTTTGA+AGG - chr1_2:13276463-13276482 None:intergenic 25.0%
! GTATTCATAATTTCATGTAG+TGG + chr1_2:13276511-13276530 Msa0057300:intron 25.0%
!!! GCATGATATTTCACTTTTTT+TGG + chr1_2:13276619-13276638 Msa0057300:intron 25.0%
! CTCTACTTGTAATAATACAA+GGG - chr1_2:13276746-13276765 None:intergenic 25.0%
!!! GTTTTTTCCTTTCACTTTTT+TGG + chr1_2:13276855-13276874 Msa0057300:intron 25.0%
! AAATAGCACTTAAATTATGG+CGG + chr1_2:13276984-13277003 Msa0057300:intron 25.0%
!! TCATAAAGATTTTCAACACA+AGG - chr1_2:13277276-13277295 None:intergenic 25.0%
!!! TGATGATACTTTTTCTCTAT+TGG + chr1_2:13277933-13277952 Msa0057300:intron 25.0%
! AAAGTGACACTAAAATCTTA+AGG - chr1_2:13278255-13278274 None:intergenic 25.0%
!!! TCCAAATAAACTTATTTCTG+GGG - chr1_2:13278304-13278323 None:intergenic 25.0%
!! GTCCAAATAAACTTATTTCT+GGG - chr1_2:13278305-13278324 None:intergenic 25.0%
! ATCTTTCAAACAAGAAAGAA+AGG - chr1_2:13278393-13278412 None:intergenic 25.0%
!! AAAGATTTTCCATGATCATT+AGG + chr1_2:13278407-13278426 Msa0057300:intron 25.0%
!!! TATTTCCCTATTAGTCTTAA+TGG + chr1_2:13278572-13278591 Msa0057300:intron 25.0%
! TGAATTTACTTCAATATGTG+TGG - chr1_2:13278598-13278617 None:intergenic 25.0%
!!! CGACATAAAATGTTTTAACA+AGG + chr1_2:13278628-13278647 Msa0057300:intron 25.0%
! TAACTTACCTTTAACCAATA+GGG - chr1_2:13279180-13279199 None:intergenic 25.0%
! ATAACTTACCTTTAACCAAT+AGG - chr1_2:13279181-13279200 None:intergenic 25.0%
!! CGAAAACTTTGAAAAAAGAT+TGG + chr1_2:13279627-13279646 Msa0057300:intron 25.0%
! ATATAGCTGAAGATATTGAA+CGG + chr1_2:13280007-13280026 Msa0057300:CDS 25.0%
! AACATTATGCACATATGTAA+TGG - chr1_2:13280148-13280167 None:intergenic 25.0%
! ATATGTGCATAATGTTATCA+AGG + chr1_2:13280152-13280171 Msa0057300:three_prime_UTR 25.0%
! TATGTGCATAATGTTATCAA+GGG + chr1_2:13280153-13280172 Msa0057300:three_prime_UTR 25.0%
! ATAATTGAATCCACGAATTA+AGG - chr1_2:13280254-13280273 None:intergenic 25.0%
! CAATATCACATATTCTCAAA+AGG - chr1_2:13280280-13280299 None:intergenic 25.0%
!! GTTATGAATGAAGTGTTTTG+AGG - chr1_2:13275011-13275030 None:intergenic 30.0%
! TGTTTGAAATTGAAAACTGC+AGG - chr1_2:13275059-13275078 None:intergenic 30.0%
AGTGGAGTTTAAGAATGAAT+TGG - chr1_2:13275153-13275172 None:intergenic 30.0%
ACAAGAAAATAGAGAGCAAA+GGG - chr1_2:13275187-13275206 None:intergenic 30.0%
AACAAGAAAATAGAGAGCAA+AGG - chr1_2:13275188-13275207 None:intergenic 30.0%
! TTGCTCTCTATTTTCTTGTT+CGG + chr1_2:13275188-13275207 Msa0057300:five_prime_UTR 30.0%
CTTCAAGTGATAGATGTTTA+TGG + chr1_2:13275371-13275390 Msa0057300:CDS 30.0%
! GCAGCATATCTAAAACAAAA+AGG + chr1_2:13275442-13275461 Msa0057300:CDS 30.0%
CAAATTGTATAGCTTCACTA+TGG + chr1_2:13275491-13275510 Msa0057300:CDS 30.0%
!! TCTATGAATTGTTGCTTTGT+TGG - chr1_2:13275610-13275629 None:intergenic 30.0%
! GCAACAATTCATAGAGTATT+TGG + chr1_2:13275615-13275634 Msa0057300:CDS 30.0%
! AGGCCTAATATCGAAATTTT+TGG - chr1_2:13275650-13275669 None:intergenic 30.0%
AAAATTTCGATATTAGGCCT+TGG + chr1_2:13275650-13275669 Msa0057300:CDS 30.0%
!! ATTGAAGGAGTTGATGAATT+TGG + chr1_2:13275823-13275842 Msa0057300:CDS 30.0%
! ATGAATTTGGTGGTAGTATT+AGG + chr1_2:13275836-13275855 Msa0057300:CDS 30.0%
!! TGTTTTGAATAAAAACAGGG+AGG - chr1_2:13276257-13276276 None:intergenic 30.0%
AAGAAACATGGAAATTTGTC+GGG + chr1_2:13276361-13276380 Msa0057300:intron 30.0%
! CTTTTGCAAAGAAACATCAT+GGG - chr1_2:13276712-13276731 None:intergenic 30.0%
! TCTTTTGCAAAGAAACATCA+TGG - chr1_2:13276713-13276732 None:intergenic 30.0%
GCTCTACTTGTAATAATACA+AGG - chr1_2:13276747-13276766 None:intergenic 30.0%
GTATTATTACAAGTAGAGCA+TGG + chr1_2:13276748-13276767 Msa0057300:intron 30.0%
AAAAAGGTAAGAGCTTATGT+GGG - chr1_2:13276813-13276832 None:intergenic 30.0%
CTAGACTTAAAACTTAGTTG+TGG - chr1_2:13276926-13276945 None:intergenic 30.0%
!!! CTAAGTTTTAAGTCTAGTCA+TGG + chr1_2:13276929-13276948 Msa0057300:intron 30.0%
!! AAAGATTTTGGGTGAAGATA+TGG + chr1_2:13277136-13277155 Msa0057300:intron 30.0%
AATAGTAGTATCAGAGCATA+TGG + chr1_2:13277227-13277246 Msa0057300:intron 30.0%
AGTAAATGAGTCAGATATTC+CGG - chr1_2:13277665-13277684 None:intergenic 30.0%
GAAAGTGGAATATACTGTAT+TGG - chr1_2:13277789-13277808 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG - chr1_2:13277804-13277823 None:intergenic 30.0%
ATCCGTGTGAAAAATCAAAT+TGG + chr1_2:13277833-13277852 Msa0057300:intron 30.0%
TCCGTGTGAAAAATCAAATT+GGG + chr1_2:13277834-13277853 Msa0057300:intron 30.0%
!! TTCTCTATTGGTTTGATTGA+AGG + chr1_2:13277945-13277964 Msa0057300:intron 30.0%
ACCCCAGAAATAAGTTTATT+TGG + chr1_2:13278300-13278319 Msa0057300:intron 30.0%
CGTCCAAATAAACTTATTTC+TGG - chr1_2:13278306-13278325 None:intergenic 30.0%
ACAAAAGTAATGTACCCTAT+TGG + chr1_2:13279163-13279182 Msa0057300:CDS 30.0%
! TAATGTACCCTATTGGTTAA+AGG + chr1_2:13279170-13279189 Msa0057300:CDS 30.0%
CAAAATTCAGATAGATGGAT+AGG - chr1_2:13279791-13279810 None:intergenic 30.0%
!!! AGCTATATTTTTTGCATCCA+TGG - chr1_2:13279995-13280014 None:intergenic 30.0%
TGTTATTACGTAAATGGTGA+TGG + chr1_2:13280107-13280126 Msa0057300:three_prime_UTR 30.0%
!! TCTTTCCATTTTTATGGACA+AGG - chr1_2:13280191-13280210 None:intergenic 30.0%
!! TTTGACTTGCTATAGAGAAA+GGG + chr1_2:13280413-13280432 Msa0057300:three_prime_UTR 30.0%
AGTGACAAAAAATTGCATTG+TGG + chr1_2:13280442-13280461 Msa0057300:three_prime_UTR 30.0%
GTGACAAAAAATTGCATTGT+GGG + chr1_2:13280443-13280462 Msa0057300:three_prime_UTR 30.0%
AATGGAGGAGGGTTATTTAA+GGG - chr1_2:13274883-13274902 None:intergenic 35.0%
!!! TGTGTGTGTGTTGTTTTCAA+TGG - chr1_2:13274901-13274920 None:intergenic 35.0%
CAAACCTTCTTTAGCTAAGA+GGG + chr1_2:13274967-13274986 Msa0057300:five_prime_UTR 35.0%
!!! GAATGAAGTGTTTTGAGGAT+TGG - chr1_2:13275006-13275025 None:intergenic 35.0%
GGTTGAGTTTCAAGAGAAAA+AGG - chr1_2:13275038-13275057 None:intergenic 35.0%
TTGAGTTCTTTATGGTTCGT+TGG - chr1_2:13275102-13275121 None:intergenic 35.0%
!!! CAAAGGGAAATTTTAGCTAG+TGG - chr1_2:13275171-13275190 None:intergenic 35.0%
GATAGATGTTTATGGATTCC+AGG + chr1_2:13275379-13275398 Msa0057300:CDS 35.0%
AGTTTGTGAGCTTCCTTTAA+TGG + chr1_2:13275558-13275577 Msa0057300:CDS 35.0%
GATATGTTGGAAAACCACTA+GGG - chr1_2:13275588-13275607 None:intergenic 35.0%
!! TGTTGCTTTGTTGGATATGT+TGG - chr1_2:13275601-13275620 None:intergenic 35.0%
ATAACTGTCTCATTGAACCA+AGG - chr1_2:13275670-13275689 None:intergenic 35.0%
!! TTGATGCTACACTTGGTTTT+TGG + chr1_2:13275701-13275720 Msa0057300:CDS 35.0%
AAAAGTGGTGAAGAGTTTAG+AGG + chr1_2:13275874-13275893 Msa0057300:CDS 35.0%
AAAGTGGTGAAGAGTTTAGA+GGG + chr1_2:13275875-13275894 Msa0057300:CDS 35.0%
! GTTTAGAGGGAAGAAAGTTT+TGG + chr1_2:13275888-13275907 Msa0057300:CDS 35.0%
! TTCAGGTATGGAAGTTTGTT+TGG + chr1_2:13275927-13275946 Msa0057300:CDS 35.0%
GAATCTCTAACCACAATAGA+AGG - chr1_2:13275976-13275995 None:intergenic 35.0%
! TAACTTTTCCGTTTCGGAAA+TGG + chr1_2:13276050-13276069 Msa0057300:intron 35.0%
TAATTTCATGTAGTGGCTAC+AGG + chr1_2:13276518-13276537 Msa0057300:intron 35.0%
AAACATCATGGGAAGGAAAA+AGG - chr1_2:13276701-13276720 None:intergenic 35.0%
TTGATAGGCCTTAATTGTGT+TGG - chr1_2:13276777-13276796 None:intergenic 35.0%
AACACAATTAAGGCCTATCA+AGG + chr1_2:13276776-13276795 Msa0057300:intron 35.0%
ACACAATTAAGGCCTATCAA+GGG + chr1_2:13276777-13276796 Msa0057300:intron 35.0%
GAAAAAGGTAAGAGCTTATG+TGG - chr1_2:13276814-13276833 None:intergenic 35.0%
CCAAACACCAAAAAAGTGAA+AGG - chr1_2:13276865-13276884 None:intergenic 35.0%
!!! CCTTTCACTTTTTTGGTGTT+TGG + chr1_2:13276862-13276881 Msa0057300:intron 35.0%
GAATGAAGCTGTTATGTGAT+GGG + chr1_2:13276884-13276903 Msa0057300:intron 35.0%
TTTAAGTCTAGTCATGGTTG+AGG + chr1_2:13276935-13276954 Msa0057300:intron 35.0%
TCATGATGCGATTGTGATTA+AGG - chr1_2:13277016-13277035 None:intergenic 35.0%
TACTACTATTGAGTCATGAG+AGG - chr1_2:13277217-13277236 None:intergenic 35.0%
TAGTATCAGAGCATATGGTT+TGG + chr1_2:13277232-13277251 Msa0057300:intron 35.0%
! GATTTTCAACACAAGGAGAA+GGG - chr1_2:13277269-13277288 None:intergenic 35.0%
! AGATTTTCAACACAAGGAGA+AGG - chr1_2:13277270-13277289 None:intergenic 35.0%
ATTGTGCAAATTCATGTGTG+TGG + chr1_2:13277517-13277536 Msa0057300:intron 35.0%
! ATGTTACTACAACTGACTCA+AGG - chr1_2:13277593-13277612 None:intergenic 35.0%
GTAAATGAGTCAGATATTCC+GGG - chr1_2:13277664-13277683 None:intergenic 35.0%
!! GCCCAATTTGATTTTTCACA+CGG - chr1_2:13277838-13277857 None:intergenic 35.0%
! ATGCTGGGAAAATCAACTTT+TGG + chr1_2:13277988-13278007 Msa0057300:CDS 35.0%
! TGCTGGGAAAATCAACTTTT+GGG + chr1_2:13277989-13278008 Msa0057300:CDS 35.0%
TAATGCTTGGCAATACAGAA+CGG + chr1_2:13278082-13278101 Msa0057300:CDS 35.0%
!!! GACAGTTTTTTGAGTTCTAG+AGG - chr1_2:13278135-13278154 None:intergenic 35.0%
CTAGAACTCAAAAAACTGTC+TGG + chr1_2:13278135-13278154 Msa0057300:CDS 35.0%
! TCCTCTTTTAATCTTGGCAA+GGG - chr1_2:13278187-13278206 None:intergenic 35.0%
! GATGTCTCCTCTTTTAATCT+TGG - chr1_2:13278193-13278212 None:intergenic 35.0%
GATTAAAAGAGGAGACATCA+AGG + chr1_2:13278194-13278213 Msa0057300:CDS 35.0%
!! TTGAAAGCACCTAATGATCA+TGG - chr1_2:13278419-13278438 None:intergenic 35.0%
TGTGGCCATTAAGACTAATA+GGG - chr1_2:13278580-13278599 None:intergenic 35.0%
TATTATAGGCCGTAACAATG+AGG + chr1_2:13278708-13278727 Msa0057300:intron 35.0%
ATCCTATGTCCTCATTGTTA+CGG - chr1_2:13278720-13278739 None:intergenic 35.0%
GGTATACACTTGAGTTCAAT+CGG + chr1_2:13279311-13279330 Msa0057300:intron 35.0%
TTTCACCTTTCCATCCATTA+GGG - chr1_2:13279924-13279943 None:intergenic 35.0%
! TTTTCACCTTTCCATCCATT+AGG - chr1_2:13279925-13279944 None:intergenic 35.0%
AATGGATGGAAAGGTGAAAA+TGG + chr1_2:13279925-13279944 Msa0057300:CDS 35.0%
!! TATTACGTAAATGGTGATGG+AGG + chr1_2:13280110-13280129 Msa0057300:three_prime_UTR 35.0%
!! TTCCATTTTTATGGACAAGG+AGG - chr1_2:13280188-13280207 None:intergenic 35.0%
TGGTGAGAAAATGTTTCCTT+TGG + chr1_2:13280222-13280241 Msa0057300:three_prime_UTR 35.0%
TGAGAAAATGTTTCCTTTGG+TGG + chr1_2:13280225-13280244 Msa0057300:three_prime_UTR 35.0%
!!! TTTTGTGGTTATTTTGGGAG+AGG + chr1_2:13280348-13280367 Msa0057300:three_prime_UTR 35.0%
!!! TTTGTGGTTATTTTGGGAGA+GGG + chr1_2:13280349-13280368 Msa0057300:three_prime_UTR 35.0%
! AGTGCAATTTTTGCCTATGT+AGG + chr1_2:13280390-13280409 Msa0057300:three_prime_UTR 35.0%
ATAGCAAGTCAAACCTACAT+AGG - chr1_2:13280406-13280425 None:intergenic 35.0%
!! GTTTGACTTGCTATAGAGAA+AGG + chr1_2:13280412-13280431 Msa0057300:three_prime_UTR 35.0%
CAATGGAGGAGGGTTATTTA+AGG - chr1_2:13274884-13274903 None:intergenic 40.0%
!!! GTGTTGTTTTCAATGGAGGA+GGG - chr1_2:13274894-13274913 None:intergenic 40.0%
!!! TGTGTTGTTTTCAATGGAGG+AGG - chr1_2:13274895-13274914 None:intergenic 40.0%
!!! GTGTGTGTTGTTTTCAATGG+AGG - chr1_2:13274898-13274917 None:intergenic 40.0%
CCTCTTAGCTAAAGAAGGTT+TGG - chr1_2:13274969-13274988 None:intergenic 40.0%
CCAAACCTTCTTTAGCTAAG+AGG + chr1_2:13274966-13274985 Msa0057300:five_prime_UTR 40.0%
!!! TGAAGTGTTTTGAGGATTGG+TGG - chr1_2:13275003-13275022 None:intergenic 40.0%
!!! TATGGTTCGTTGGTTGGTTT+TGG - chr1_2:13275092-13275111 None:intergenic 40.0%
GTTCTTTATGGTTCGTTGGT+TGG - chr1_2:13275098-13275117 None:intergenic 40.0%
! ATTCCAGGTCCATTGATAGT+AGG + chr1_2:13275394-13275413 Msa0057300:CDS 40.0%
!! GGAAGCTCACAAACTTGTTT+TGG - chr1_2:13275553-13275572 None:intergenic 40.0%
CCACTAGGGAATTCCATTAA+AGG - chr1_2:13275574-13275593 None:intergenic 40.0%
CCTTTAATGGAATTCCCTAG+TGG + chr1_2:13275571-13275590 Msa0057300:CDS 40.0%
GGATATGTTGGAAAACCACT+AGG - chr1_2:13275589-13275608 None:intergenic 40.0%
!! ATGCTACACTTGGTTTTTGG+AGG + chr1_2:13275704-13275723 Msa0057300:CDS 40.0%
!! TGCTACACTTGGTTTTTGGA+GGG + chr1_2:13275705-13275724 Msa0057300:CDS 40.0%
! TGGTTACCGAGTTTGTTTGT+CGG + chr1_2:13275752-13275771 Msa0057300:CDS 40.0%
TCATCAACTCCTTCAATCTC+CGG - chr1_2:13275820-13275839 None:intergenic 40.0%
!! GAAGGAGTTGATGAATTTGG+TGG + chr1_2:13275826-13275845 Msa0057300:CDS 40.0%
!! TAGAGGGAAGAAAGTTTTGG+TGG + chr1_2:13275891-13275910 Msa0057300:CDS 40.0%
!! AAAGTTTTGGTGGTTGGATG+TGG + chr1_2:13275901-13275920 Msa0057300:CDS 40.0%
TGGATGTGGAAATTCAGGTA+TGG + chr1_2:13275915-13275934 Msa0057300:CDS 40.0%
GTTGCGAGAATCGTTAGATT+TGG + chr1_2:13276093-13276112 Msa0057300:intron 40.0%
ATCATGGGAAGGAAAAAGGA+GGG - chr1_2:13276697-13276716 None:intergenic 40.0%
TGCAAAGAAACATCATGGGA+AGG - chr1_2:13276708-13276727 None:intergenic 40.0%
ATAGGCCTTAATTGTGTTGG+TGG - chr1_2:13276774-13276793 None:intergenic 40.0%
GGAATGAAGCTGTTATGTGA+TGG + chr1_2:13276883-13276902 Msa0057300:intron 40.0%
! AGAGCATATGGTTTGGCTAA+AGG + chr1_2:13277239-13277258 Msa0057300:intron 40.0%
TGTTGACATTGTGTCAACAG+TGG + chr1_2:13277319-13277338 Msa0057300:intron 40.0%
TCAAATTGGGCCAGATATTC+TGG + chr1_2:13277847-13277866 Msa0057300:intron 40.0%
CAAATTGGGCCAGATATTCT+GGG + chr1_2:13277848-13277867 Msa0057300:intron 40.0%
! GATTTTCCCAGCATATCTCT+TGG - chr1_2:13277982-13278001 None:intergenic 40.0%
TAACCACTTTAGCAACCACA+TGG - chr1_2:13278019-13278038 None:intergenic 40.0%
TTAACCATGACACAGTGAGA+AGG - chr1_2:13278065-13278084 None:intergenic 40.0%
ACTGTGTCATGGTTAATGCT+TGG + chr1_2:13278069-13278088 Msa0057300:CDS 40.0%
AAAACTGTCTGGAAAGACAC+CGG + chr1_2:13278146-13278165 Msa0057300:CDS 40.0%
! CTCCTCTTTTAATCTTGGCA+AGG - chr1_2:13278188-13278207 None:intergenic 40.0%
GTGTGGCCATTAAGACTAAT+AGG - chr1_2:13278581-13278600 None:intergenic 40.0%
CAGGCATCAAGAGGTTAAAA+CGG + chr1_2:13279076-13279095 Msa0057300:CDS 40.0%
!! TACAGAGTGGAATTTGCTGA+TGG + chr1_2:13279099-13279118 Msa0057300:CDS 40.0%
!! GAATTTTGACGCCATCGTAT+TGG + chr1_2:13279131-13279150 Msa0057300:CDS 40.0%
GCACTAACGACATGTGAAAA+AGG + chr1_2:13279290-13279309 Msa0057300:intron 40.0%
AGATAGATGGATAGGCTCAT+AGG - chr1_2:13279783-13279802 None:intergenic 40.0%
! GGATAAGGGTATGTTCTCTA+AGG + chr1_2:13279873-13279892 Msa0057300:intron 40.0%
! GGTATGTTCTCTAAGGAAGA+TGG + chr1_2:13279880-13279899 Msa0057300:CDS 40.0%
TAGTGAAACCAACAGCAAAG+AGG - chr1_2:13279951-13279970 None:intergenic 40.0%
! TTCACTAAACGTGGACTACT+TGG + chr1_2:13279964-13279983 Msa0057300:CDS 40.0%
CTGAAGATATTGAACGGTGT+TGG + chr1_2:13280013-13280032 Msa0057300:CDS 40.0%
GCATAATGTTATCAAGGGTG+TGG + chr1_2:13280158-13280177 Msa0057300:three_prime_UTR 40.0%
CTCCTCCTTGTCCATAAAAA+TGG + chr1_2:13280183-13280202 Msa0057300:three_prime_UTR 40.0%
GAGGAGGGTTATTTAAGGGA+AGG - chr1_2:13274879-13274898 None:intergenic 45.0%
TTGGCCCTCTTAGCTAAAGA+AGG - chr1_2:13274974-13274993 None:intergenic 45.0%
!! TGAGGATTGGTGGCAACTTT+TGG - chr1_2:13274993-13275012 None:intergenic 45.0%
ATGAAGACGAAGACGATCGT+AGG - chr1_2:13275527-13275546 None:intergenic 45.0%
GCTGAGTTTGATGCTACACT+TGG + chr1_2:13275694-13275713 Msa0057300:CDS 45.0%
! TTACCGAGTTTGTTTGTCGG+TGG + chr1_2:13275755-13275774 Msa0057300:CDS 45.0%
CAACCACCGACAAACAAACT+CGG - chr1_2:13275761-13275780 None:intergenic 45.0%
!! GGGAAGAAAGTTTTGGTGGT+TGG + chr1_2:13275895-13275914 Msa0057300:CDS 45.0%
GTGGTTGGATGTGGAAATTC+AGG + chr1_2:13275910-13275929 Msa0057300:CDS 45.0%
TGATGCTGCTCCTTCTATTG+TGG + chr1_2:13275963-13275982 Msa0057300:CDS 45.0%
!! CATCGGTTCCATTTCCGAAA+CGG - chr1_2:13276061-13276080 None:intergenic 45.0%
ATTCTCAAGCATGCCTAGCA+TGG + chr1_2:13276643-13276662 Msa0057300:intron 45.0%
TTCTCAAGCATGCCTAGCAT+GGG + chr1_2:13276644-13276663 Msa0057300:intron 45.0%
GTCATCTTCTATCCCATGCT+AGG - chr1_2:13276659-13276678 None:intergenic 45.0%
AGGAGGGGAAAAAAGCAACT+GGG - chr1_2:13276681-13276700 None:intergenic 45.0%
AAGGAGGGGAAAAAAGCAAC+TGG - chr1_2:13276682-13276701 None:intergenic 45.0%
TCATGGGAAGGAAAAAGGAG+GGG - chr1_2:13276696-13276715 None:intergenic 45.0%
CATCATGGGAAGGAAAAAGG+AGG - chr1_2:13276698-13276717 None:intergenic 45.0%
CATGGCCACCAACACAATTA+AGG + chr1_2:13276766-13276785 Msa0057300:intron 45.0%
AAGGTAAGAGCTTATGTGGG+AGG - chr1_2:13276810-13276829 None:intergenic 45.0%
ACTTAGTTGTGGAGATGCTG+TGG - chr1_2:13276915-13276934 None:intergenic 45.0%
! GCATATGGTTTGGCTAAAGG+TGG + chr1_2:13277242-13277261 Msa0057300:intron 45.0%
! GAGGGAGTATATAGTAGAGG+GGG - chr1_2:13277638-13277657 None:intergenic 45.0%
! GGAGGGAGTATATAGTAGAG+GGG - chr1_2:13277639-13277658 None:intergenic 45.0%
! CGGAGGGAGTATATAGTAGA+GGG - chr1_2:13277640-13277659 None:intergenic 45.0%
! ACGGAGGGAGTATATAGTAG+AGG - chr1_2:13277641-13277660 None:intergenic 45.0%
ATGAGTCAGATATTCCGGGA+CGG - chr1_2:13277660-13277679 None:intergenic 45.0%
ATCCTGCCAAGAGATATGCT+GGG + chr1_2:13277973-13277992 Msa0057300:CDS 45.0%
!!! CAACTTTTGGGTTGTCCATG+TGG + chr1_2:13278001-13278020 Msa0057300:CDS 45.0%
TGTCCATGTGGTTGCTAAAG+TGG + chr1_2:13278013-13278032 Msa0057300:CDS 45.0%
ATGTAATCCACCAGTTGCAC+GGG - chr1_2:13278042-13278061 None:intergenic 45.0%
GATGTAATCCACCAGTTGCA+CGG - chr1_2:13278043-13278062 None:intergenic 45.0%
ACATCCTTCTCACTGTGTCA+TGG + chr1_2:13278058-13278077 Msa0057300:CDS 45.0%
CTTGGCAATACAGAACGGTT+CGG + chr1_2:13278087-13278106 Msa0057300:CDS 45.0%
!! CAATACAGAACGGTTCGGTT+TGG + chr1_2:13278092-13278111 Msa0057300:CDS 45.0%
GCCCTTGCCAAGATTAAAAG+AGG + chr1_2:13278183-13278202 Msa0057300:CDS 45.0%
!! CGTTTTAACCTCTTGATGCC+TGG - chr1_2:13279078-13279097 None:intergenic 45.0%
GAGGTTAAAACGGTACAGAG+TGG + chr1_2:13279086-13279105 Msa0057300:CDS 45.0%
GTAACCAGTTGCCAATACGA+TGG - chr1_2:13279145-13279164 None:intergenic 45.0%
GGATAGGCTCATAGGAAGAT+AGG - chr1_2:13279775-13279794 None:intergenic 45.0%
CTAAGGAAGATGGATACCCT+AGG + chr1_2:13279890-13279909 Msa0057300:CDS 45.0%
CATTAGGGAATGGCTTCCTA+GGG - chr1_2:13279909-13279928 None:intergenic 45.0%
CCTTTCCATCCATTAGGGAA+TGG - chr1_2:13279919-13279938 None:intergenic 45.0%
! CCATTCCCTAATGGATGGAA+AGG + chr1_2:13279916-13279935 Msa0057300:CDS 45.0%
! GAAAATGGCCTCTTTGCTGT+TGG + chr1_2:13279940-13279959 Msa0057300:CDS 45.0%
!! GCTGTTGGTTTCACTAAACG+TGG + chr1_2:13279955-13279974 Msa0057300:CDS 45.0%
! TGAACGGTGTTGGAAAGTTG+AGG + chr1_2:13280023-13280042 Msa0057300:CDS 45.0%
CGAATTAAGGACACCACCAA+AGG - chr1_2:13280241-13280260 None:intergenic 45.0%
!! TTGGTGGTGTCCTTAATTCG+TGG + chr1_2:13280241-13280260 Msa0057300:three_prime_UTR 45.0%
! AATTGCATTGTGGGCTGATC+AGG + chr1_2:13280452-13280471 Msa0057300:three_prime_UTR 45.0%
!! TCTTGTTCGGTGTCAGACCT+TGG + chr1_2:13275201-13275220 Msa0057300:five_prime_UTR 50.0%
! TTTGACGAATCGAAGCGCCA+AGG - chr1_2:13275221-13275240 None:intergenic 50.0%
GCTCCTACTATCAATGGACC+TGG - chr1_2:13275400-13275419 None:intergenic 50.0%
! GGTCCATTGATAGTAGGAGC+AGG + chr1_2:13275400-13275419 Msa0057300:CDS 50.0%
GGTCCTGCTCCTACTATCAA+TGG - chr1_2:13275406-13275425 None:intergenic 50.0%
ATAGTAGGAGCAGGACCTTC+AGG + chr1_2:13275409-13275428 Msa0057300:CDS 50.0%
!! CACTTGGTTTTTGGAGGGTG+AGG + chr1_2:13275710-13275729 Msa0057300:CDS 50.0%
!! TTTTTGGAGGGTGAGGAGTG+AGG + chr1_2:13275717-13275736 Msa0057300:CDS 50.0%
!! TTTTGGAGGGTGAGGAGTGA+GGG + chr1_2:13275718-13275737 Msa0057300:CDS 50.0%
GCAACTGCTGCATTGTGCAT+CGG - chr1_2:13276078-13276097 None:intergenic 50.0%
! GAGCTTATGTGGGAGGCTTT+TGG - chr1_2:13276803-13276822 None:intergenic 50.0%
CGCATCATGATCGTCGTTGT+TGG + chr1_2:13277026-13277045 Msa0057300:intron 50.0%
! AACAGTGGTGCTAACGACGT+AGG + chr1_2:13277334-13277353 Msa0057300:intron 50.0%
ACTATATACTCCCTCCGTCC+CGG + chr1_2:13277643-13277662 Msa0057300:intron 50.0%
! TTGGGCCAGATATTCTGGGA+CGG + chr1_2:13277852-13277871 Msa0057300:intron 50.0%
CATCCTGCCAAGAGATATGC+TGG + chr1_2:13277972-13277991 Msa0057300:CDS 50.0%
TTCCCAGCATATCTCTTGGC+AGG - chr1_2:13277978-13277997 None:intergenic 50.0%
AAAGTGGTTACCCGTGCAAC+TGG + chr1_2:13278029-13278048 Msa0057300:CDS 50.0%
!! CAGAACGGTTCGGTTTGGTT+CGG + chr1_2:13278097-13278116 Msa0057300:CDS 50.0%
AAAGACACCGGTCCTAGATG+TGG + chr1_2:13278158-13278177 Msa0057300:CDS 50.0%
AAGACACCGGTCCTAGATGT+GGG + chr1_2:13278159-13278178 Msa0057300:CDS 50.0%
GGCCGTAACAATGAGGACAT+AGG + chr1_2:13278715-13278734 Msa0057300:intron 50.0%
CCATTAGGGAATGGCTTCCT+AGG - chr1_2:13279910-13279929 None:intergenic 50.0%
CCTAGGAAGCCATTCCCTAA+TGG + chr1_2:13279907-13279926 Msa0057300:CDS 50.0%
GGAAGCCATTCCCTAATGGA+TGG + chr1_2:13279911-13279930 Msa0057300:CDS 50.0%
!! TGGACTACTTGGTGCATCCA+TGG + chr1_2:13279975-13279994 Msa0057300:CDS 50.0%
GCTGCTACTGCTAGTCCTGA+AGG - chr1_2:13275427-13275446 None:intergenic 55.0%
TTTGGAGGGTGAGGAGTGAG+GGG + chr1_2:13275719-13275738 Msa0057300:CDS 55.0%
CGGTGGTTGATCGTTGCAAC+CGG + chr1_2:13275772-13275791 Msa0057300:CDS 55.0%
TGCAACCGGAGAGAATGCTG+AGG + chr1_2:13275786-13275805 Msa0057300:CDS 55.0%
AACCGGAGAGAATGCTGAGG+CGG + chr1_2:13275789-13275808 Msa0057300:CDS 55.0%
AACCGCCTCAGCATTCTCTC+CGG - chr1_2:13275794-13275813 None:intergenic 55.0%
GAATGCTGAGGCGGTTGTAC+CGG + chr1_2:13275798-13275817 Msa0057300:CDS 55.0%
GCGGTTGTACCGGAGATTGA+AGG + chr1_2:13275808-13275827 Msa0057300:CDS 55.0%
! GGAGGCTTTTGGCCCTTGAT+AGG - chr1_2:13276792-13276811 None:intergenic 55.0%
! AGTGGTGCTAACGACGTAGG+TGG + chr1_2:13277337-13277356 Msa0057300:intron 55.0%
! GTGGTGCTAACGACGTAGGT+GGG + chr1_2:13277338-13277357 Msa0057300:intron 55.0%
! TGGTGCTAACGACGTAGGTG+GGG + chr1_2:13277339-13277358 Msa0057300:intron 55.0%
GTCAGATATTCCGGGACGGA+GGG - chr1_2:13277656-13277675 None:intergenic 55.0%
AGTCAGATATTCCGGGACGG+AGG - chr1_2:13277657-13277676 None:intergenic 55.0%
!! GCCAGATATTCTGGGACGGA+GGG + chr1_2:13277856-13277875 Msa0057300:intron 55.0%
TCCCTCCGTCCCAGAATATC+TGG - chr1_2:13277860-13277879 None:intergenic 55.0%
!! AGTTCTAGAGGACCCAACCG+AGG - chr1_2:13278123-13278142 None:intergenic 55.0%
TCTCCATAGCTCCCTCGTTC+AGG + chr1_2:13279047-13279066 Msa0057300:intron 55.0%
GTACCTGAACGAGGGAGCTA+TGG - chr1_2:13279053-13279072 None:intergenic 55.0%
AGGTACGTCCAGGCATCAAG+AGG + chr1_2:13279067-13279086 Msa0057300:intron 55.0%
! GACGCCATCGTATTGGCAAC+TGG + chr1_2:13279138-13279157 Msa0057300:CDS 55.0%
! TCGTTTTCCGCAGCTGCTGC+AGG + chr1_2:13276145-13276164 Msa0057300:intron 60.0%
! CGTTTTCCGCAGCTGCTGCA+GGG + chr1_2:13276146-13276165 Msa0057300:intron 60.0%
GGTGCTAACGACGTAGGTGG+GGG + chr1_2:13277340-13277359 Msa0057300:intron 60.0%
!! GGCCAGATATTCTGGGACGG+AGG + chr1_2:13277855-13277874 Msa0057300:intron 60.0%
GTGGTTACCCGTGCAACTGG+TGG + chr1_2:13278032-13278051 Msa0057300:CDS 60.0%
!! GGTTCGGTTTGGTTCGGCCT+CGG + chr1_2:13278103-13278122 Msa0057300:CDS 60.0%
!! GGTTTGGTTCGGCCTCGGTT+GGG + chr1_2:13278108-13278127 Msa0057300:CDS 60.0%
! AGGGCACCCACATCTAGGAC+CGG - chr1_2:13278168-13278187 None:intergenic 60.0%
!! TGGCAAGGGCACCCACATCT+AGG - chr1_2:13278173-13278192 None:intergenic 60.0%
TCCCTCGTTCAGGTACGTCC+AGG + chr1_2:13279057-13279076 Msa0057300:intron 60.0%
GCCTGGACGTACCTGAACGA+GGG - chr1_2:13279061-13279080 None:intergenic 60.0%
TGCCTGGACGTACCTGAACG+AGG - chr1_2:13279062-13279081 None:intergenic 60.0%
GAGGGTGAGGAGTGAGGGGA+AGG + chr1_2:13275723-13275742 Msa0057300:CDS 65.0%
GGTGAGGAGTGAGGGGAAGG+CGG + chr1_2:13275726-13275745 Msa0057300:CDS 65.0%
GTGAGGAGTGAGGGGAAGGC+GGG + chr1_2:13275727-13275746 Msa0057300:CDS 65.0%
GAGTGAGGGGAAGGCGGGAA+TGG + chr1_2:13275732-13275751 Msa0057300:CDS 65.0%
CTACAGCCCTGCAGCAGCTG+CGG - chr1_2:13276155-13276174 None:intergenic 65.0%
!! CGGTTTGGTTCGGCCTCGGT+TGG + chr1_2:13278107-13278126 Msa0057300:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 13274871 13280500 13274871 ID=Msa0057300;Name=Msa0057300
chr1_2 mRNA 13274871 13280500 13274871 ID=Msa0057300-mRNA-1;Parent=Msa0057300;Name=Msa0057300-mRNA-1;_AED=0.03;_eAED=0.03;_QI=406|1|1|1|1|1|4|423|431
chr1_2 exon 13274871 13275996 13274871 ID=Msa0057300-mRNA-1:exon:5162;Parent=Msa0057300-mRNA-1
chr1_2 exon 13277967 13278215 13277967 ID=Msa0057300-mRNA-1:exon:5163;Parent=Msa0057300-mRNA-1
chr1_2 exon 13279069 13279191 13279069 ID=Msa0057300-mRNA-1:exon:5164;Parent=Msa0057300-mRNA-1
chr1_2 exon 13279874 13280500 13279874 ID=Msa0057300-mRNA-1:exon:5165;Parent=Msa0057300-mRNA-1
chr1_2 five_prime_UTR 13274871 13275276 13274871 ID=Msa0057300-mRNA-1:five_prime_utr;Parent=Msa0057300-mRNA-1
chr1_2 CDS 13275277 13275996 13275277 ID=Msa0057300-mRNA-1:cds;Parent=Msa0057300-mRNA-1
chr1_2 CDS 13277967 13278215 13277967 ID=Msa0057300-mRNA-1:cds;Parent=Msa0057300-mRNA-1
chr1_2 CDS 13279069 13279191 13279069 ID=Msa0057300-mRNA-1:cds;Parent=Msa0057300-mRNA-1
chr1_2 CDS 13279874 13280077 13279874 ID=Msa0057300-mRNA-1:cds;Parent=Msa0057300-mRNA-1
chr1_2 three_prime_UTR 13280078 13280500 13280078 ID=Msa0057300-mRNA-1:three_prime_utr;Parent=Msa0057300-mRNA-1
Gene Sequence

>Msa0057300

ATGGACAGTTATCTAAGAGAATTAGAAGGAAAACAAGCACATGATCCTTTATTCATAGAAAAAATGATCAACAACAAGAACAAGAATTCAACTTCTTCAAGTGATAGATGTTTATGGATTCCAGGTCCATTGATAGTAGGAGCAGGACCTTCAGGACTAGCAGTAGCAGCATATCTAAAACAAAAAGGTGTTCCAAGTTTAATACTAGAAAGATCAAATTGTATAGCTTCACTATGGAAGCTAAAAACCTACGATCGTCTTCGTCTTCATTTACCAAAACAAGTTTGTGAGCTTCCTTTAATGGAATTCCCTAGTGGTTTTCCAACATATCCAACAAAGCAACAATTCATAGAGTATTTGGAAAGTTATTCCAAAAATTTCGATATTAGGCCTTGGTTCAATGAGACAGTTATGCATGCTGAGTTTGATGCTACACTTGGTTTTTGGAGGGTGAGGAGTGAGGGGAAGGCGGGAATGGTTACCGAGTTTGTTTGTCGGTGGTTGATCGTTGCAACCGGAGAGAATGCTGAGGCGGTTGTACCGGAGATTGAAGGAGTTGATGAATTTGGTGGTAGTATTAGGCATACTAGTTTGTATAAAAGTGGTGAAGAGTTTAGAGGGAAGAAAGTTTTGGTGGTTGGATGTGGAAATTCAGGTATGGAAGTTTGTTTGGATCTTTGTAATCATGATGCTGCTCCTTCTATTGTGGTTAGAGATTCAGTACACATCCTGCCAAGAGATATGCTGGGAAAATCAACTTTTGGGTTGTCCATGTGGTTGCTAAAGTGGTTACCCGTGCAACTGGTGGATTACATCCTTCTCACTGTGTCATGGTTAATGCTTGGCAATACAGAACGGTTCGGTTTGGTTCGGCCTCGGTTGGGTCCTCTAGAACTCAAAAAACTGTCTGGAAAGACACCGGTCCTAGATGTGGGTGCCCTTGCCAAGATTAAAAGAGGAGACATCAAGGTACGTCCAGGCATCAAGAGGTTAAAACGGTACAGAGTGGAATTTGCTGATGGAAGTACAGAGAATTTTGACGCCATCGTATTGGCAACTGGTTACAAAAGTAATGTACCCTATTGGTTAAAGGATAAGGGTATGTTCTCTAAGGAAGATGGATACCCTAGGAAGCCATTCCCTAATGGATGGAAAGGTGAAAATGGCCTCTTTGCTGTTGGTTTCACTAAACGTGGACTACTTGGTGCATCCATGGATGCAAAAAATATAGCTGAAGATATTGAACGGTGTTGGAAAGTTGAGGCAAAGCATATATTTCAACAATCAAATTCATGA
Protein sequence

>Msa0057300

MDSYLRELEGKQAHDPLFIEKMINNKNKNSTSSSDRCLWIPGPLIVGAGPSGLAVAAYLKQKGVPSLILERSNCIASLWKLKTYDRLRLHLPKQVCELPLMEFPSGFPTYPTKQQFIEYLESYSKNFDIRPWFNETVMHAEFDATLGFWRVRSEGKAGMVTEFVCRWLIVATGENAEAVVPEIEGVDEFGGSIRHTSLYKSGEEFRGKKVLVVGCGNSGMEVCLDLCNHDAAPSIVVRDSVHILPRDMLGKSTFGLSMWLLKWLPVQLVDYILLTVSWLMLGNTERFGLVRPRLGPLELKKLSGKTPVLDVGALAKIKRGDIKVRPGIKRLKRYRVEFADGSTENFDAIVLATGYKSNVPYWLKDKGMFSKEDGYPRKPFPNGWKGENGLFAVGFTKRGLLGASMDAKNIAEDIERCWKVEAKHIFQQSNS*