AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0343420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0343420 MtrunA17_Chr1g0147221 97.680 431 9 1 1 431 1 430 0.0 864
Msa0343420 MtrunA17_Chr3g0139441 75.529 425 99 2 1 424 1 421 0.0 664
Msa0343420 MtrunA17_Chr6g0485621 64.941 425 132 5 4 423 5 417 0.0 568
Msa0343420 MtrunA17_Chr1g0182991 61.111 414 158 3 19 431 1 412 0.0 520
Msa0343420 MtrunA17_Chr1g0169111 59.796 393 154 2 35 424 94 485 6.34e-178 506
Msa0343420 MtrunA17_Chr1g0148801 61.658 386 142 3 36 420 9 389 3.39e-176 498
Msa0343420 MtrunA17_Chr7g0262591 58.396 399 159 3 34 431 15 407 1.76e-174 494
Msa0343420 MtrunA17_Chr7g0262471 56.832 322 132 3 111 431 213 528 2.33e-128 381
Msa0343420 MtrunA17_Chr7g0268611 45.040 373 198 3 44 414 9 376 2.84e-117 347
Msa0343420 MtrunA17_Chr7g0268621 47.059 374 189 5 44 414 7 374 1.41e-114 340
Msa0343420 MtrunA17_Chr8g0350371 43.467 375 205 3 44 416 7 376 3.30e-114 340
Msa0343420 MtrunA17_Chr5g0412881 42.971 377 208 3 44 418 7 378 1.46e-112 335
Msa0343420 MtrunA17_Chr3g0125711 43.223 391 212 5 44 431 8 391 4.43e-107 322
Msa0343420 MtrunA17_Chr3g0125691 43.316 374 205 3 44 415 8 376 5.33e-107 322
Msa0343420 MtrunA17_Chr3g0125701 43.316 374 205 3 44 415 8 376 8.54e-107 321
Msa0343420 MtrunA17_Chr4g0025641 42.714 199 113 1 44 241 17 215 1.20e-50 171
Msa0343420 MtrunA17_Chr4g0025651 40.659 182 104 3 249 429 4 182 6.41e-42 147
Msa0343420 MtrunA17_Chr3g0129991 36.975 119 74 1 101 218 1 119 4.44e-26 102
Msa0343420 MtrunA17_Chr3g0091441 24.251 367 171 12 45 373 15 312 1.09e-13 72.8
Msa0343420 MtrunA17_Chr8g0352461 24.880 209 129 6 45 227 6 212 1.63e-13 72.0
Msa0343420 MtrunA17_Chr2g0304721 25.403 248 142 11 45 252 7 251 5.45e-12 67.4
Msa0343420 MtrunA17_Chr2g0305211 24.576 236 137 11 45 242 7 239 8.31e-12 67.0
Msa0343420 MtrunA17_Chr2g0305231 24.576 236 137 11 45 242 7 239 8.31e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0343420 AT5G25620.1 66.667 420 125 4 6 423 7 413 0.0 570
Msa0343420 AT5G25620.2 66.667 420 125 4 6 423 7 413 0.0 570
Msa0343420 AT4G13260.1 65.860 413 126 3 4 415 3 401 0.0 556
Msa0343420 AT1G04610.1 59.747 395 154 2 34 424 28 421 3.32e-178 505
Msa0343420 AT4G28720.1 56.627 415 175 3 19 429 1 414 9.98e-177 501
Msa0343420 AT1G04180.1 58.111 413 170 3 19 430 1 411 1.85e-174 494
Msa0343420 AT5G43890.1 57.946 409 168 3 19 424 1 408 2.07e-174 494
Msa0343420 AT2G33230.1 58.513 417 157 3 22 424 1 415 8.72e-173 491
Msa0343420 AT5G11320.1 58.793 381 151 2 38 418 12 386 2.74e-165 471
Msa0343420 AT4G32540.1 56.313 396 167 3 29 423 7 397 3.04e-162 463
Msa0343420 AT4G32540.2 56.281 398 166 4 29 423 7 399 9.20e-161 459
Msa0343420 AT4G13260.2 64.396 323 100 3 4 325 3 311 4.23e-147 421
Msa0343420 AT5G11320.2 58.716 327 130 1 38 364 12 333 1.41e-140 406
Msa0343420 AT4G13260.3 67.010 291 95 1 126 415 8 298 1.02e-137 397
Msa0343420 AT1G21430.1 48.267 375 184 5 44 415 10 377 1.47e-119 354
Msa0343420 AT1G48910.1 44.504 373 200 3 44 414 6 373 1.17e-115 343
Msa0343420 AT5G61290.1 28.125 224 114 7 45 228 18 234 9.06e-14 73.6
Msa0343420 AT5G07800.1 26.818 220 122 7 45 227 18 235 3.62e-13 71.6
Msa0343420 AT1G62560.2 22.511 231 141 5 45 246 15 236 6.65e-13 70.5
Msa0343420 AT1G62560.1 22.511 231 141 5 45 246 15 236 7.23e-13 70.5
Msa0343420 AT5G45180.1 24.148 352 200 14 45 355 15 340 9.47e-13 70.1
Msa0343420 AT1G65860.1 21.834 229 144 4 45 246 15 235 7.90e-12 67.4
Msa0343420 AT1G12200.2 25.616 203 117 7 59 228 30 231 1.98e-11 65.9
Msa0343420 AT1G12200.1 25.616 203 117 7 59 228 30 231 2.76e-11 65.9

Find 151 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAATATTGAGTTCTTTA+TGG 0.107363 3_1:+1531039 None:intergenic
GCAACAATTCATAGAGTATT+TGG 0.149405 3_1:-1530531 Msa0343420:CDS
CTTCAAGTGATAGATGTTTA+TGG 0.160401 3_1:-1530775 Msa0343420:CDS
AGTTTGTGAGCTTCCTTTAA+TGG 0.176443 3_1:-1530588 Msa0343420:CDS
ATAATTGAATCCACGAATTA+AGG 0.208791 3_1:+1525904 None:intergenic
CAATGGAGGAGGGTTATTTA+AGG 0.210846 3_1:+1531265 None:intergenic
ATTAGATGTTATTACGTAAA+TGG 0.214058 3_1:-1526054 Msa0343420:three_prime_UTR
TTGAAAATATGTAATGAAAA+AGG 0.217260 3_1:+1530893 None:intergenic
ATTGAAGGAGTTGATGAATT+TGG 0.225886 3_1:-1530323 Msa0343420:CDS
TATGGTTCGTTGGTTGGTTT+TGG 0.255596 3_1:+1531057 None:intergenic
TGAGGATTGGTGGCAACTTT+TGG 0.257070 3_1:+1531156 None:intergenic
ATGAATTTGGTGGTAGTATT+AGG 0.259873 3_1:-1530310 Msa0343420:CDS
GATTATTTGTTTAATTATTT+AGG 0.262592 3_1:-1526081 Msa0343420:three_prime_UTR
GGAAGCTCACAAACTTGTTT+TGG 0.287110 3_1:+1530596 None:intergenic
ACAAAACAAACATTCATTCT+TGG 0.293492 3_1:+1525673 None:intergenic
GGTTGAGTTTCAAGAGAAAA+AGG 0.299604 3_1:+1531111 None:intergenic
GGTGAGGAGTGAGGGGAAGG+CGG 0.303591 3_1:-1530420 Msa0343420:CDS
GTGGTTGGATGTGGAAATTC+AGG 0.305649 3_1:-1530236 Msa0343420:CDS
TCTATGAATTGTTGCTTTGT+TGG 0.308851 3_1:+1530539 None:intergenic
CCACTAGGGAATTCCATTAA+AGG 0.311291 3_1:+1530575 None:intergenic
TTCAGGTATGGAAGTTTGTT+TGG 0.318132 3_1:-1530219 Msa0343420:CDS
ATAACTTACCTTTAACCAAT+AGG 0.321026 3_1:+1526976 None:intergenic
CGGTTTGGTTCGGCCTCGGT+TGG 0.332146 3_1:-1528045 Msa0343420:CDS
TAATGTACCCTATTGGTTAA+AGG 0.336947 3_1:-1526984 Msa0343420:intron
ATGCTGGGAAGATCAACTTT+TGG 0.341794 3_1:-1528164 Msa0343420:CDS
GTTTAGAGGGAAGAAAGTTT+TGG 0.342078 3_1:-1530258 Msa0343420:CDS
GTGAGGAGTGAGGGGAAGGC+GGG 0.346356 3_1:-1530419 Msa0343420:CDS
TTTCACCTTTCCATCCATTA+GGG 0.348305 3_1:+1526236 None:intergenic
AATGGATGGAAAGGTGAAAA+TGG 0.349533 3_1:-1526232 Msa0343420:CDS
ATAGTAGGAGCAGGACCTTC+AGG 0.355072 3_1:-1530737 Msa0343420:CDS
GATAGATGTTTATGGATTCC+AGG 0.359227 3_1:-1530767 Msa0343420:CDS
TAACTTACCTTTAACCAATA+GGG 0.359812 3_1:+1526977 None:intergenic
TTCAATATATTCTCAAAGTA+AGG 0.363434 3_1:+1525878 None:intergenic
GCAGCATATCTAAAACAAAA+AGG 0.363705 3_1:-1530704 Msa0343420:CDS
CCAAACCTTCTTTAGCTAAG+AGG 0.370654 3_1:-1531180 Msa0343420:five_prime_UTR
TGTTGCTTTGTTGGATATGT+TGG 0.373958 3_1:+1530548 None:intergenic
CCTCTTAGCTAAAGAAGGTT+TGG 0.377834 3_1:+1531180 None:intergenic
CCATTAGGGAATGGCTTCCT+AGG 0.378690 3_1:+1526250 None:intergenic
AGTGGAGTTTAAGAATGAAT+TGG 0.382785 3_1:+1530996 None:intergenic
AATGGAGGAGGGTTATTTAA+GGG 0.390482 3_1:+1531266 None:intergenic
AATTGCATTGTGGGCTGATC+TGG 0.390941 3_1:-1525705 Msa0343420:three_prime_UTR
GGTTCGGTTTGGTTCGGCCT+CGG 0.399694 3_1:-1528049 Msa0343420:CDS
ACAAAAGTAATGTACCCTAT+TGG 0.401012 3_1:-1526991 Msa0343420:CDS
GACGCCATCGTATTGGCAAC+TGG 0.408426 3_1:-1527016 Msa0343420:CDS
GGATAAGGGTATGTTCTCTA+AGG 0.417839 3_1:-1526284 Msa0343420:CDS
CCTAGGAAGCCATTCCCTAA+TGG 0.421132 3_1:-1526250 Msa0343420:CDS
TTCACTAAACGTGGACTACT+TGG 0.424605 3_1:-1526193 Msa0343420:CDS
GAGGGTGAGGAGTGAGGGGA+AGG 0.436723 3_1:-1530423 Msa0343420:CDS
GAATCTCTAACCACAATAGA+AGG 0.439167 3_1:+1530173 None:intergenic
CAATACAGAACGGTTCGGTT+TGG 0.439433 3_1:-1528060 Msa0343420:CDS
GTTTGACTTGCTATAGAGAA+AGG 0.444621 3_1:-1525745 Msa0343420:three_prime_UTR
GTTCTTTATGGTTCGTTGGT+TGG 0.450667 3_1:+1531051 None:intergenic
CAAATTGTATAGCTTCACTA+TGG 0.453940 3_1:-1530655 Msa0343420:CDS
CATCCTGCCAAGAGATATGC+TGG 0.456200 3_1:-1528180 Msa0343420:CDS
TTGGTGGCGTCCTTAATTCG+TGG 0.460258 3_1:-1525914 Msa0343420:three_prime_UTR
GAGTGAGGGGAAGGCGGGAA+TGG 0.461670 3_1:-1530414 Msa0343420:CDS
ATATGTGCATAATGTTATCA+AGG 0.461773 3_1:-1526003 Msa0343420:three_prime_UTR
TGAGAAAATGTTTCCTTTGG+TGG 0.466681 3_1:-1525930 Msa0343420:three_prime_UTR
TTGGCCCTCTTAGCTAAAGA+AGG 0.469696 3_1:+1531175 None:intergenic
CGGTGGTTGATCGTTGCAAC+CGG 0.474729 3_1:-1530374 Msa0343420:CDS
ATGGTATATGTGCAGGATAA+GGG 0.476167 3_1:-1526298 Msa0343420:intron
CAGAACGGTTCGGTTTGGTT+CGG 0.479807 3_1:-1528055 Msa0343420:CDS
TGGTGAGAAAATGTTTCCTT+TGG 0.480626 3_1:-1525933 Msa0343420:three_prime_UTR
GAATGCTGAGGCGGTTGTAC+CGG 0.482930 3_1:-1530348 Msa0343420:CDS
ACAAGAAAATAGAGAGCAAA+GGG 0.483050 3_1:+1530962 None:intergenic
GGTCCTGCTCCTACTATCAA+TGG 0.486209 3_1:+1530743 None:intergenic
AACATTATGCACATATGTAA+TGG 0.486939 3_1:+1526010 None:intergenic
AAAAGTGGTGAAGAGTTTAG+AGG 0.487823 3_1:-1530272 Msa0343420:CDS
AAAATTTCGATATTAGGCCT+TGG 0.488183 3_1:-1530496 Msa0343420:CDS
TTTGACTTGCTATAGAGAAA+GGG 0.488459 3_1:-1525744 Msa0343420:three_prime_UTR
TGTCCATGTGGTTGCTAAAG+TGG 0.490674 3_1:-1528139 Msa0343420:CDS
CTGAAGATATTGAACGGTGT+TGG 0.492435 3_1:-1526144 Msa0343420:CDS
CTTGGCAATACAGAACGGTT+CGG 0.494535 3_1:-1528065 Msa0343420:CDS
GAAAATGGCCTCTTTGCTGT+TGG 0.494708 3_1:-1526217 Msa0343420:CDS
TGGTTACCGAGTTTGTTTGT+CGG 0.495604 3_1:-1530394 Msa0343420:CDS
TGGCAAGGGCACCCACATCT+AGG 0.496006 3_1:+1527982 None:intergenic
AAAGTGGTGAAGAGTTTAGA+GGG 0.496476 3_1:-1530271 Msa0343420:CDS
AAAGTGGTTACCCGTGCAAC+TGG 0.496540 3_1:-1528123 Msa0343420:CDS
TTCCCAGCATATCTCTTGGC+AGG 0.498185 3_1:+1528177 None:intergenic
CCTTTCCATCCATTAGGGAA+TGG 0.499153 3_1:+1526241 None:intergenic
TTGAGTTCTTTATGGTTCGT+TGG 0.506551 3_1:+1531047 None:intergenic
GATCTTTCTAGTATTAAACT+TGG 0.510703 3_1:+1530677 None:intergenic
GGTTTGGTTCGGCCTCGGTT+GGG 0.511085 3_1:-1528044 Msa0343420:CDS
TCATCAACTCCTTCAATCTC+CGG 0.512367 3_1:+1530329 None:intergenic
TCTTGTTCGGTATCAGACCT+TGG 0.519938 3_1:-1530945 Msa0343420:five_prime_UTR
CAAACCTTCTTTAGCTAAGA+GGG 0.521997 3_1:-1531179 Msa0343420:five_prime_UTR
AGTTATCTAAGAGAATTAGA+AGG 0.522034 3_1:-1530863 Msa0343420:CDS
GCTGAGTTTGATGCTACACT+TGG 0.526718 3_1:-1530452 Msa0343420:CDS
TTTGGAGGGTGAGGAGTGAG+GGG 0.529144 3_1:-1530427 Msa0343420:CDS
GGTATGTTCTCTAAGGAAGA+TGG 0.529812 3_1:-1526277 Msa0343420:CDS
GATCTTCCCAGCATATCTCT+TGG 0.531092 3_1:+1528173 None:intergenic
TGTTTGAAATTGAAAACTGC+AGG 0.531962 3_1:+1531090 None:intergenic
ATTCCAGGTCCATTGATAGT+AGG 0.534394 3_1:-1530752 Msa0343420:CDS
AACCGCCTCAGCATTCTCTC+CGG 0.535999 3_1:+1530355 None:intergenic
ATAGCAAGTCAAACCTACAT+AGG 0.536740 3_1:+1525754 None:intergenic
CATACTAGTTTGTATAAAAG+TGG 0.538558 3_1:-1530287 Msa0343420:CDS
GAGGAGGGTTATTTAAGGGA+AGG 0.542857 3_1:+1531270 None:intergenic
ATGTAATCCACCAGTTGCAC+GGG 0.546866 3_1:+1528113 None:intergenic
TGATGCTGCTCCTTCTATTG+TGG 0.549061 3_1:-1530183 Msa0343420:CDS
TGGACTACTTGGTGCATCCA+TGG 0.549422 3_1:-1526182 Msa0343420:CDS
ACATCCTTCTCACTGTGTCA+TGG 0.550548 3_1:-1528094 Msa0343420:CDS
TGTTATTACGTAAATGGTGA+TGG 0.551749 3_1:-1526048 Msa0343420:three_prime_UTR
TCCCTCGTTCAGGTACGTCC+AGG 0.553289 3_1:-1527097 Msa0343420:intron
GGATATGTTGGAAAACCACT+AGG 0.555382 3_1:+1530560 None:intergenic
AACAAGAAAATAGAGAGCAA+AGG 0.559557 3_1:+1530961 None:intergenic
GATTAAAAGAGGAGACATCA+AGG 0.563954 3_1:-1527958 Msa0343420:intron
CCATTCCCTAATGGATGGAA+AGG 0.565023 3_1:-1526241 Msa0343420:CDS
GCCCTTGCCAAGATTAAAAG+AGG 0.565947 3_1:-1527969 Msa0343420:CDS
CCTTTAATGGAATTCCCTAG+TGG 0.567347 3_1:-1530575 Msa0343420:CDS
GCGGTTGTACCGGAGATTGA+AGG 0.568267 3_1:-1530338 Msa0343420:CDS
CAGGCATCAAGAGGTTAAAA+CGG 0.572356 3_1:-1527078 Msa0343420:CDS
GGAAGCCATTCCCTAATGGA+TGG 0.574345 3_1:-1526246 Msa0343420:CDS
GCTGTTGGTTTCACTAAACG+TGG 0.576427 3_1:-1526202 Msa0343420:CDS
GAAGGAGTTGATGAATTTGG+TGG 0.576519 3_1:-1530320 Msa0343420:CDS
AAAGACACCGGTCCTAGATG+TGG 0.578940 3_1:-1527994 Msa0343420:CDS
GGTCCATTGATAGTAGGAGC+AGG 0.584095 3_1:-1530746 Msa0343420:CDS
CGAATTAAGGACGCCACCAA+AGG 0.585922 3_1:+1525917 None:intergenic
GATGTAATCCACCAGTTGCA+CGG 0.587259 3_1:+1528112 None:intergenic
GCTGCTACTGCTAGTCCTGA+AGG 0.587967 3_1:+1530722 None:intergenic
GTGGTTACCCGTGCAACTGG+TGG 0.590830 3_1:-1528120 Msa0343420:CDS
AGGGCACCCACATCTAGGAC+CGG 0.591712 3_1:+1527987 None:intergenic
TACAGAGTGGAATTTGCTGA+TGG 0.592027 3_1:-1527055 Msa0343420:CDS
TTTGAAGAATCGAAGCGCCA+AGG 0.599953 3_1:+1530928 None:intergenic
CTAAGGAAGATGGATACCCT+AGG 0.600641 3_1:-1526267 Msa0343420:CDS
CATTAGGGAATGGCTTCCTA+GGG 0.603860 3_1:+1526251 None:intergenic
TGAACGGTGTTGGAAAGTTG+AGG 0.604949 3_1:-1526134 Msa0343420:CDS
GCTCCTACTATCAATGGACC+TGG 0.607612 3_1:+1530749 None:intergenic
TATGTGCATAATGTTATCAA+GGG 0.608213 3_1:-1526002 Msa0343420:three_prime_UTR
TATTACGTAAATGGTGATGG+AGG 0.615148 3_1:-1526045 Msa0343420:three_prime_UTR
TGGATGTGGAAATTCAGGTA+TGG 0.622494 3_1:-1530231 Msa0343420:CDS
ACTGTGTCATGGTTAATGCT+TGG 0.622906 3_1:-1528083 Msa0343420:CDS
AGGTACGTCCAGGCATCAAG+AGG 0.629400 3_1:-1527087 Msa0343420:CDS
TAATGCTTGGCAATACAGAA+CGG 0.631117 3_1:-1528070 Msa0343420:CDS
TAGTGAAACCAACAGCAAAG+AGG 0.634282 3_1:+1526209 None:intergenic
AAGACACCGGTCCTAGATGT+GGG 0.638855 3_1:-1527993 Msa0343420:CDS
ATGAAGACGAAGACGATCGT+AGG 0.641325 3_1:+1530622 None:intergenic
GTAACCAGTTGCCAATACGA+TGG 0.642598 3_1:+1527012 None:intergenic
TTACCGAGTTTGTTTGTCGG+TGG 0.653194 3_1:-1530391 Msa0343420:CDS
TTAACCATGACACAGTGAGA+AGG 0.654806 3_1:+1528090 None:intergenic
GAGGTTAAAACGGTACAGAG+TGG 0.654866 3_1:-1527068 Msa0343420:CDS
CAACCACCGACAAACAAACT+CGG 0.654999 3_1:+1530388 None:intergenic
ATATAGCTGAAGATATTGAA+CGG 0.658373 3_1:-1526150 Msa0343420:CDS
GATATGTTGGAAAACCACTA+GGG 0.658620 3_1:+1530561 None:intergenic
AACCGGAGAGAATGCTGAGG+CGG 0.661182 3_1:-1530357 Msa0343420:CDS
GCATAATGTTATCAAGGGTG+TGG 0.661386 3_1:-1525997 Msa0343420:three_prime_UTR
TAACCACTTTAGCAACCACA+TGG 0.668567 3_1:+1528136 None:intergenic
AAAACTGTCTGGAAAGACAC+CGG 0.678715 3_1:-1528006 Msa0343420:CDS
AGTTCTAGAGGACCCAACCG+AGG 0.681521 3_1:+1528032 None:intergenic
ATCCTGCCAAGAGATATGCT+GGG 0.697559 3_1:-1528179 Msa0343420:CDS
ATAACTGTCTCATTGAACCA+AGG 0.702457 3_1:+1530479 None:intergenic
TGCAACCGGAGAGAATGCTG+AGG 0.712718 3_1:-1530360 Msa0343420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAAAGTTGTTTTTATTTT+TGG - chr3_1:1527022-1527041 Msa0343420:CDS 10.0%
!! ACATTATAAAATATTTACAT+TGG - chr3_1:1528222-1528241 Msa0343420:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr3_1:1528615-1528634 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr3_1:1528616-1528635 None:intergenic 10.0%
!!! AGATATTTTTAATAAATTGA+CGG - chr3_1:1529557-1529576 Msa0343420:intron 10.0%
!! GCAAAAAAAAAAAAATTATA+CGG - chr3_1:1530230-1530249 Msa0343420:CDS 10.0%
!! GATTATTTGTTTAATTATTT+AGG - chr3_1:1530873-1530892 Msa0343420:exon 10.0%
!!! TTAGTTTATTAATTTTTTTG+TGG - chr3_1:1531130-1531149 Msa0343420:five_prime_UTR 10.0%
!! TTTAAATATTGAGTTCTTTA+TGG + chr3_1:1525918-1525937 None:intergenic 15.0%
!! TTGAAAATATGTAATGAAAA+AGG + chr3_1:1526064-1526083 None:intergenic 15.0%
!!! TTCATTACATATTTTCAAAA+TGG - chr3_1:1526066-1526085 Msa0343420:three_prime_UTR 15.0%
!!! ATCATTTTTTCTATGAATAA+AGG + chr3_1:1526133-1526152 None:intergenic 15.0%
!!! GTAACTAATTTTTTTTAAGA+AGG + chr3_1:1527196-1527215 None:intergenic 15.0%
!! TCTAATATAGCATATAAAAT+AGG - chr3_1:1527291-1527310 Msa0343420:intron 15.0%
!!! ATTCAAAAATACTTTTGAAA+TGG + chr3_1:1527374-1527393 None:intergenic 15.0%
!! ACAAAAAAAAAAAGAGAAAA+AGG + chr3_1:1527636-1527655 None:intergenic 15.0%
!!! TGCTATTTTTCATATTATTA+AGG + chr3_1:1527777-1527796 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr3_1:1528614-1528633 None:intergenic 15.0%
!! AATCAAATCATACTTTATTA+AGG - chr3_1:1529239-1529258 Msa0343420:intron 15.0%
!! AAAATTCTAAACAATGAAAA+CGG - chr3_1:1530027-1530046 Msa0343420:intron 15.0%
!!! AATGAAAATATGTTTTTACT+TGG - chr3_1:1530264-1530283 Msa0343420:CDS 15.0%
!! AATAATACAAATAACTGAAA+TGG - chr3_1:1530637-1530656 Msa0343420:CDS 15.0%
!!! TTTTTTTCTTTCCATTTTTA+TGG + chr3_1:1530996-1531015 None:intergenic 15.0%
!! ATGGAAAGAAAAAAAAAATA+TGG - chr3_1:1531001-1531020 Msa0343420:five_prime_UTR 15.0%
!!! TAATTTTTTTGTGGTTATTT+TGG - chr3_1:1531139-1531158 Msa0343420:five_prime_UTR 15.0%
!!! AATTTTTTTGTGGTTATTTT+GGG - chr3_1:1531140-1531159 Msa0343420:five_prime_UTR 15.0%
!! ATTCCAAAAATTTCGATATT+AGG - chr3_1:1526452-1526471 Msa0343420:intron 20.0%
!! AGAAAGAAAAACAAAGTAAA+AGG + chr3_1:1526830-1526849 None:intergenic 20.0%
!!! GTATGTTTTGAATAAAAACA+GGG + chr3_1:1527067-1527086 None:intergenic 20.0%
!!! AGTATGTTTTGAATAAAAAC+AGG + chr3_1:1527068-1527087 None:intergenic 20.0%
!!! ATATTGAATTTTATGCTACA+AGG + chr3_1:1527126-1527145 None:intergenic 20.0%
!! AATTTCCATGTTTCTTAATT+AGG + chr3_1:1527164-1527183 None:intergenic 20.0%
!!! CATGATATTTCACTTTTTTT+GGG - chr3_1:1527427-1527446 Msa0343420:intron 20.0%
!! GAAAAATAGCACTTAAATTA+TGG - chr3_1:1527786-1527805 Msa0343420:intron 20.0%
!!! TATCTAACACTTAAAGATTT+TGG - chr3_1:1527929-1527948 Msa0343420:intron 20.0%
!!! ATCTAACACTTAAAGATTTT+GGG - chr3_1:1527930-1527949 Msa0343420:intron 20.0%
!! GTTGAAAATCTTTATGATAA+AGG - chr3_1:1528084-1528103 Msa0343420:CDS 20.0%
!! TTGGATAAAAAAATGAATGT+CGG - chr3_1:1528241-1528260 Msa0343420:intron 20.0%
!! ATCAAAAATCTTAAGATCTT+AGG + chr3_1:1528295-1528314 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG + chr3_1:1528591-1528610 None:intergenic 20.0%
!!! GAGTACTTTTTTATAGAAAA+AGG - chr3_1:1528681-1528700 Msa0343420:intron 20.0%
!!! TTCGACATTAGTTTTAAATA+AGG - chr3_1:1529454-1529473 Msa0343420:intron 20.0%
!! CACAATCAAACAATTATTAT+AGG - chr3_1:1529496-1529515 Msa0343420:intron 20.0%
!! ATAGTAGTTAAATCTTTAGT+AGG - chr3_1:1529628-1529647 Msa0343420:intron 20.0%
!!! ATTTTTAAAGAGTGCATAAT+GGG + chr3_1:1530007-1530026 None:intergenic 20.0%
!!! TATTTTTAAAGAGTGCATAA+TGG + chr3_1:1530008-1530027 None:intergenic 20.0%
!!! AAGCTTTTTTATTTCGAATA+AGG - chr3_1:1530518-1530537 Msa0343420:CDS 20.0%
!! TATTTCGAATAAGGAAAATA+CGG - chr3_1:1530527-1530546 Msa0343420:CDS 20.0%
!!! ATTTTCAAAATTCAGATAGA+TGG + chr3_1:1530593-1530612 None:intergenic 20.0%
!! ATTAGATGTTATTACGTAAA+TGG - chr3_1:1530900-1530919 Msa0343420:five_prime_UTR 20.0%
!! TTCAATATATTCTCAAAGTA+AGG + chr3_1:1531079-1531098 None:intergenic 20.0%
! AGTTATCTAAGAGAATTAGA+AGG - chr3_1:1526091-1526110 Msa0343420:exon 25.0%
!! GATCTTTCTAGTATTAAACT+TGG + chr3_1:1526280-1526299 None:intergenic 25.0%
!! CATACTAGTTTGTATAAAAG+TGG - chr3_1:1526667-1526686 Msa0343420:intron 25.0%
!!! CTTTTTTAACTTTTCCGTTT+CGG - chr3_1:1526852-1526871 Msa0343420:intron 25.0%
!!! ATGCTGATTTTCATAATCAT+AGG + chr3_1:1526989-1527008 None:intergenic 25.0%
! TATCTCCTAATTAAGAAACA+TGG - chr3_1:1527156-1527175 Msa0343420:intron 25.0%
! TAAGAAACATGGAAATTTGT+CGG - chr3_1:1527167-1527186 Msa0343420:intron 25.0%
! AAAACAAAACACAACTTTGA+AGG + chr3_1:1527270-1527289 None:intergenic 25.0%
! GTATTCATAATTTCATGTAG+TGG - chr3_1:1527318-1527337 Msa0343420:intron 25.0%
!!! GCATGATATTTCACTTTTTT+TGG - chr3_1:1527426-1527445 Msa0343420:intron 25.0%
! CTCTACTTGTAATAATACAA+GGG + chr3_1:1527553-1527572 None:intergenic 25.0%
!!! GTTTTTTCCTTTCACTTTTT+TGG - chr3_1:1527660-1527679 Msa0343420:intron 25.0%
! AAATAGCACTTAAATTATGG+CGG - chr3_1:1527789-1527808 Msa0343420:intron 25.0%
!! TCATAAAGATTTTCAACACA+AGG + chr3_1:1528081-1528100 None:intergenic 25.0%
! TGGATAAAAAAATGAATGTC+GGG - chr3_1:1528242-1528261 Msa0343420:intron 25.0%
! GAAAGTGGAATATATTGTAT+TGG + chr3_1:1528592-1528611 None:intergenic 25.0%
! AAAGTGACACTAAAATCTTA+AGG + chr3_1:1529057-1529076 None:intergenic 25.0%
!!! TCCAAATAAACTTATTTCTG+GGG + chr3_1:1529106-1529125 None:intergenic 25.0%
!! GTCCAAATAAACTTATTTCT+GGG + chr3_1:1529107-1529126 None:intergenic 25.0%
! ATCTTTCAAACAAGAAAGAA+AGG + chr3_1:1529195-1529214 None:intergenic 25.0%
!! AAAGATTTTCCATGATCATT+AGG - chr3_1:1529209-1529228 Msa0343420:intron 25.0%
!!! TATTTCCCTATTAGTCTTAA+TGG - chr3_1:1529374-1529393 Msa0343420:intron 25.0%
! TGAATTTACTTCAATATGTG+TGG + chr3_1:1529400-1529419 None:intergenic 25.0%
!!! CGACATAAAATGTTTTAACA+AGG - chr3_1:1529430-1529449 Msa0343420:intron 25.0%
! TAACTTACCTTTAACCAATA+GGG + chr3_1:1529980-1529999 None:intergenic 25.0%
! ATAACTTACCTTTAACCAAT+AGG + chr3_1:1529981-1530000 None:intergenic 25.0%
!! CGAAAACTTTGAAAAAAGAT+TGG - chr3_1:1530425-1530444 Msa0343420:CDS 25.0%
! ATATAGCTGAAGATATTGAA+CGG - chr3_1:1530804-1530823 Msa0343420:CDS 25.0%
! AACATTATGCACATATGTAA+TGG + chr3_1:1530947-1530966 None:intergenic 25.0%
! ATATGTGCATAATGTTATCA+AGG - chr3_1:1530951-1530970 Msa0343420:five_prime_UTR 25.0%
! TATGTGCATAATGTTATCAA+GGG - chr3_1:1530952-1530971 Msa0343420:five_prime_UTR 25.0%
! ATAATTGAATCCACGAATTA+AGG + chr3_1:1531053-1531072 None:intergenic 25.0%
! TGTTTGAAATTGAAAACTGC+AGG + chr3_1:1525867-1525886 None:intergenic 30.0%
AGTGGAGTTTAAGAATGAAT+TGG + chr3_1:1525961-1525980 None:intergenic 30.0%
ACAAGAAAATAGAGAGCAAA+GGG + chr3_1:1525995-1526014 None:intergenic 30.0%
AACAAGAAAATAGAGAGCAA+AGG + chr3_1:1525996-1526015 None:intergenic 30.0%
! TTGCTCTCTATTTTCTTGTT+CGG - chr3_1:1525996-1526015 Msa0343420:three_prime_UTR 30.0%
CTTCAAGTGATAGATGTTTA+TGG - chr3_1:1526179-1526198 Msa0343420:CDS 30.0%
! GCAGCATATCTAAAACAAAA+AGG - chr3_1:1526250-1526269 Msa0343420:CDS 30.0%
CAAATTGTATAGCTTCACTA+TGG - chr3_1:1526299-1526318 Msa0343420:intron 30.0%
!! TCTATGAATTGTTGCTTTGT+TGG + chr3_1:1526418-1526437 None:intergenic 30.0%
! GCAACAATTCATAGAGTATT+TGG - chr3_1:1526423-1526442 Msa0343420:intron 30.0%
! AGGCCTAATATCGAAATTTT+TGG + chr3_1:1526458-1526477 None:intergenic 30.0%
AAAATTTCGATATTAGGCCT+TGG - chr3_1:1526458-1526477 Msa0343420:intron 30.0%
!! ATTGAAGGAGTTGATGAATT+TGG - chr3_1:1526631-1526650 Msa0343420:intron 30.0%
! ATGAATTTGGTGGTAGTATT+AGG - chr3_1:1526644-1526663 Msa0343420:intron 30.0%
!! TGTTTTGAATAAAAACAGGG+AGG + chr3_1:1527064-1527083 None:intergenic 30.0%
AAGAAACATGGAAATTTGTC+GGG - chr3_1:1527168-1527187 Msa0343420:intron 30.0%
! CTTTTGCAAAGAAACATCAT+GGG + chr3_1:1527519-1527538 None:intergenic 30.0%
! TCTTTTGCAAAGAAACATCA+TGG + chr3_1:1527520-1527539 None:intergenic 30.0%
GCTCTACTTGTAATAATACA+AGG + chr3_1:1527554-1527573 None:intergenic 30.0%
GTATTATTACAAGTAGAGCA+TGG - chr3_1:1527555-1527574 Msa0343420:intron 30.0%
AAAAAGGTAAGAGCTTATGT+GGG + chr3_1:1527620-1527639 None:intergenic 30.0%
CTAGACTTAAAACTTAGTTG+TGG + chr3_1:1527731-1527750 None:intergenic 30.0%
!!! CTAAGTTTTAAGTCTAGTCA+TGG - chr3_1:1527734-1527753 Msa0343420:intron 30.0%
!! AAAGATTTTGGGTGAAGATA+TGG - chr3_1:1527941-1527960 Msa0343420:intron 30.0%
AATAGTAGTATCAGAGCATA+TGG - chr3_1:1528032-1528051 Msa0343420:CDS 30.0%
TGTAAATGAGTCAGATATTC+CGG + chr3_1:1528469-1528488 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr3_1:1528607-1528626 None:intergenic 30.0%
AATCCGTGTGAAAAATCAAA+TGG - chr3_1:1528635-1528654 Msa0343420:intron 30.0%
ATCCGTGTGAAAAATCAAAT+GGG - chr3_1:1528636-1528655 Msa0343420:intron 30.0%
!!! TGATGGTACTTTTTCTCTAT+TGG - chr3_1:1528735-1528754 Msa0343420:intron 30.0%
!! TTCTCTATTGGTTTGATTGA+AGG - chr3_1:1528747-1528766 Msa0343420:intron 30.0%
ACCCCAGAAATAAGTTTATT+TGG - chr3_1:1529102-1529121 Msa0343420:intron 30.0%
CGTCCAAATAAACTTATTTC+TGG + chr3_1:1529108-1529127 None:intergenic 30.0%
ACAAAAGTAATGTACCCTAT+TGG - chr3_1:1529963-1529982 Msa0343420:intron 30.0%
! TAATGTACCCTATTGGTTAA+AGG - chr3_1:1529970-1529989 Msa0343420:intron 30.0%
CAAAATTCAGATAGATGGAT+AGG + chr3_1:1530588-1530607 None:intergenic 30.0%
!!! AGCTATATTTTTTGCATCCA+TGG + chr3_1:1530792-1530811 None:intergenic 30.0%
TGTTATTACGTAAATGGTGA+TGG - chr3_1:1530906-1530925 Msa0343420:five_prime_UTR 30.0%
!! TCTTTCCATTTTTATGGACA+AGG + chr3_1:1530990-1531009 None:intergenic 30.0%
!! TTTGACTTGCTATAGAGAAA+GGG - chr3_1:1531210-1531229 Msa0343420:five_prime_UTR 30.0%
AGTGACAAAAAATTGCATTG+TGG - chr3_1:1531239-1531258 Msa0343420:five_prime_UTR 30.0%
GTGACAAAAAATTGCATTGT+GGG - chr3_1:1531240-1531259 Msa0343420:five_prime_UTR 30.0%
AATGGAGGAGGGTTATTTAA+GGG + chr3_1:1525691-1525710 None:intergenic 35.0%
!!! TGTGTGTGTGTTGTTTTCAA+TGG + chr3_1:1525709-1525728 None:intergenic 35.0%
CAAACCTTCTTTAGCTAAGA+GGG - chr3_1:1525775-1525794 Msa0343420:three_prime_UTR 35.0%
!!! GAATGAAGTGTTTTGAGGAT+TGG + chr3_1:1525814-1525833 None:intergenic 35.0%
!! GGTATGAATGAAGTGTTTTG+AGG + chr3_1:1525819-1525838 None:intergenic 35.0%
GGTTGAGTTTCAAGAGAAAA+AGG + chr3_1:1525846-1525865 None:intergenic 35.0%
TTGAGTTCTTTATGGTTCGT+TGG + chr3_1:1525910-1525929 None:intergenic 35.0%
!!! CAAAGGGAAATTTTAGCTAG+TGG + chr3_1:1525979-1525998 None:intergenic 35.0%
GATAGATGTTTATGGATTCC+AGG - chr3_1:1526187-1526206 Msa0343420:CDS 35.0%
AGTTTGTGAGCTTCCTTTAA+TGG - chr3_1:1526366-1526385 Msa0343420:intron 35.0%
GATATGTTGGAAAACCACTA+GGG + chr3_1:1526396-1526415 None:intergenic 35.0%
!! TGTTGCTTTGTTGGATATGT+TGG + chr3_1:1526409-1526428 None:intergenic 35.0%
ATAACTGTCTCATTGAACCA+AGG + chr3_1:1526478-1526497 None:intergenic 35.0%
!! TTGATGCTACACTTGGTTTT+TGG - chr3_1:1526509-1526528 Msa0343420:intron 35.0%
AAAAGTGGTGAAGAGTTTAG+AGG - chr3_1:1526682-1526701 Msa0343420:intron 35.0%
AAAGTGGTGAAGAGTTTAGA+GGG - chr3_1:1526683-1526702 Msa0343420:intron 35.0%
! GTTTAGAGGGAAGAAAGTTT+TGG - chr3_1:1526696-1526715 Msa0343420:intron 35.0%
! TTCAGGTATGGAAGTTTGTT+TGG - chr3_1:1526735-1526754 Msa0343420:intron 35.0%
GAATCTCTAACCACAATAGA+AGG + chr3_1:1526784-1526803 None:intergenic 35.0%
! TAACTTTTCCGTTTCGGAAA+TGG - chr3_1:1526858-1526877 Msa0343420:intron 35.0%
TAATTTCATGTAGTGGCTAC+AGG - chr3_1:1527325-1527344 Msa0343420:intron 35.0%
AAACATCATGGGAAGGAAAA+AGG + chr3_1:1527508-1527527 None:intergenic 35.0%
TTGATAGGCCTTAATTGTGT+TGG + chr3_1:1527584-1527603 None:intergenic 35.0%
AACACAATTAAGGCCTATCA+AGG - chr3_1:1527583-1527602 Msa0343420:intron 35.0%
ACACAATTAAGGCCTATCAA+GGG - chr3_1:1527584-1527603 Msa0343420:intron 35.0%
GAAAAAGGTAAGAGCTTATG+TGG + chr3_1:1527621-1527640 None:intergenic 35.0%
CCAAACACCAAAAAAGTGAA+AGG + chr3_1:1527670-1527689 None:intergenic 35.0%
!!! CCTTTCACTTTTTTGGTGTT+TGG - chr3_1:1527667-1527686 Msa0343420:intron 35.0%
GAATGAAGCTGTTATGTGAT+GGG - chr3_1:1527689-1527708 Msa0343420:intron 35.0%
TTTAAGTCTAGTCATGGTTG+AGG - chr3_1:1527740-1527759 Msa0343420:intron 35.0%
TCATGATGCGATTGTGATTA+AGG + chr3_1:1527821-1527840 None:intergenic 35.0%
TACTACTATTGAGTCATGAG+AGG + chr3_1:1528022-1528041 None:intergenic 35.0%
TAGTATCAGAGCATATGGTT+TGG - chr3_1:1528037-1528056 Msa0343420:CDS 35.0%
! GATTTTCAACACAAGGAGAA+GGG + chr3_1:1528074-1528093 None:intergenic 35.0%
! AGATTTTCAACACAAGGAGA+AGG + chr3_1:1528075-1528094 None:intergenic 35.0%
ATTGTGCAAATTCATGTGTG+TGG - chr3_1:1528321-1528340 Msa0343420:intron 35.0%
! ATGTTACTACAACTGACTCA+AGG + chr3_1:1528397-1528416 None:intergenic 35.0%
GTAAATGAGTCAGATATTCC+GGG + chr3_1:1528468-1528487 None:intergenic 35.0%
TCCGTGTGAAAAATCAAATG+GGG - chr3_1:1528637-1528656 Msa0343420:intron 35.0%
!! ACCCCATTTGATTTTTCACA+CGG + chr3_1:1528641-1528660 None:intergenic 35.0%
GCAAGAAAACAATCTCATGA+TGG - chr3_1:1528718-1528737 Msa0343420:intron 35.0%
TAATGCTTGGCAATACAGAA+CGG - chr3_1:1528884-1528903 Msa0343420:intron 35.0%
!!! GACAGTTTTTTGAGTTCTAG+AGG + chr3_1:1528937-1528956 None:intergenic 35.0%
CTAGAACTCAAAAAACTGTC+TGG - chr3_1:1528937-1528956 Msa0343420:intron 35.0%
! TCCTCTTTTAATCTTGGCAA+GGG + chr3_1:1528989-1529008 None:intergenic 35.0%
! GATGTCTCCTCTTTTAATCT+TGG + chr3_1:1528995-1529014 None:intergenic 35.0%
GATTAAAAGAGGAGACATCA+AGG - chr3_1:1528996-1529015 Msa0343420:intron 35.0%
!! TTGAAAGCACCTAATGATCA+TGG + chr3_1:1529221-1529240 None:intergenic 35.0%
TGTGGCCATTAAGACTAATA+GGG + chr3_1:1529382-1529401 None:intergenic 35.0%
TATTATAGGCCGTAACAATG+AGG - chr3_1:1529510-1529529 Msa0343420:intron 35.0%
ATCCTATGTCCTCATTGTTA+CGG + chr3_1:1529522-1529541 None:intergenic 35.0%
GGTATACACTTGAGTTCAAT+CGG - chr3_1:1530111-1530130 Msa0343420:intron 35.0%
AACTGAAATGGTATATGTGC+AGG - chr3_1:1530649-1530668 Msa0343420:CDS 35.0%
AATGGTATATGTGCAGGATA+AGG - chr3_1:1530655-1530674 Msa0343420:CDS 35.0%
TTTCACCTTTCCATCCATTA+GGG + chr3_1:1530721-1530740 None:intergenic 35.0%
! TTTTCACCTTTCCATCCATT+AGG + chr3_1:1530722-1530741 None:intergenic 35.0%
AATGGATGGAAAGGTGAAAA+TGG - chr3_1:1530722-1530741 Msa0343420:CDS 35.0%
!! TATTACGTAAATGGTGATGG+AGG - chr3_1:1530909-1530928 Msa0343420:five_prime_UTR 35.0%
!! TTCCATTTTTATGGACAAGG+AGG + chr3_1:1530987-1531006 None:intergenic 35.0%
TGGTGAGAAAATGTTTCCTT+TGG - chr3_1:1531021-1531040 Msa0343420:five_prime_UTR 35.0%
TGAGAAAATGTTTCCTTTGG+TGG - chr3_1:1531024-1531043 Msa0343420:five_prime_UTR 35.0%
!!! TTTTGTGGTTATTTTGGGAG+AGG - chr3_1:1531145-1531164 Msa0343420:five_prime_UTR 35.0%
!!! TTTGTGGTTATTTTGGGAGA+GGG - chr3_1:1531146-1531165 Msa0343420:five_prime_UTR 35.0%
! AGTGCAATTTTTGCCTATGT+AGG - chr3_1:1531187-1531206 Msa0343420:five_prime_UTR 35.0%
ATAGCAAGTCAAACCTACAT+AGG + chr3_1:1531203-1531222 None:intergenic 35.0%
!! GTTTGACTTGCTATAGAGAA+AGG - chr3_1:1531209-1531228 Msa0343420:five_prime_UTR 35.0%
CAATGGAGGAGGGTTATTTA+AGG + chr3_1:1525692-1525711 None:intergenic 40.0%
!!! GTGTTGTTTTCAATGGAGGA+GGG + chr3_1:1525702-1525721 None:intergenic 40.0%
!!! TGTGTTGTTTTCAATGGAGG+AGG + chr3_1:1525703-1525722 None:intergenic 40.0%
!!! GTGTGTGTTGTTTTCAATGG+AGG + chr3_1:1525706-1525725 None:intergenic 40.0%
CCTCTTAGCTAAAGAAGGTT+TGG + chr3_1:1525777-1525796 None:intergenic 40.0%
CCAAACCTTCTTTAGCTAAG+AGG - chr3_1:1525774-1525793 Msa0343420:three_prime_UTR 40.0%
!!! TGAAGTGTTTTGAGGATTGG+TGG + chr3_1:1525811-1525830 None:intergenic 40.0%
GTTTCAAGAGAAAAAGGCTC+TGG + chr3_1:1525840-1525859 None:intergenic 40.0%
!!! TATGGTTCGTTGGTTGGTTT+TGG + chr3_1:1525900-1525919 None:intergenic 40.0%
GTTCTTTATGGTTCGTTGGT+TGG + chr3_1:1525906-1525925 None:intergenic 40.0%
! ATTCCAGGTCCATTGATAGT+AGG - chr3_1:1526202-1526221 Msa0343420:CDS 40.0%
!! GGAAGCTCACAAACTTGTTT+TGG + chr3_1:1526361-1526380 None:intergenic 40.0%
CCACTAGGGAATTCCATTAA+AGG + chr3_1:1526382-1526401 None:intergenic 40.0%
CCTTTAATGGAATTCCCTAG+TGG - chr3_1:1526379-1526398 Msa0343420:intron 40.0%
GGATATGTTGGAAAACCACT+AGG + chr3_1:1526397-1526416 None:intergenic 40.0%
!! ATGCTACACTTGGTTTTTGG+AGG - chr3_1:1526512-1526531 Msa0343420:intron 40.0%
!! TGCTACACTTGGTTTTTGGA+GGG - chr3_1:1526513-1526532 Msa0343420:intron 40.0%
! TGGTTACCGAGTTTGTTTGT+CGG - chr3_1:1526560-1526579 Msa0343420:intron 40.0%
TCATCAACTCCTTCAATCTC+CGG + chr3_1:1526628-1526647 None:intergenic 40.0%
!! GAAGGAGTTGATGAATTTGG+TGG - chr3_1:1526634-1526653 Msa0343420:intron 40.0%
!! TAGAGGGAAGAAAGTTTTGG+TGG - chr3_1:1526699-1526718 Msa0343420:intron 40.0%
!! AAAGTTTTGGTGGTTGGATG+TGG - chr3_1:1526709-1526728 Msa0343420:intron 40.0%
TGGATGTGGAAATTCAGGTA+TGG - chr3_1:1526723-1526742 Msa0343420:intron 40.0%
GTTGCGAGAATCGTTAGATT+TGG - chr3_1:1526901-1526920 Msa0343420:intron 40.0%
ATCATGGGAAGGAAAAAGGA+GGG + chr3_1:1527504-1527523 None:intergenic 40.0%
TGCAAAGAAACATCATGGGA+AGG + chr3_1:1527515-1527534 None:intergenic 40.0%
ATAGGCCTTAATTGTGTTGG+TGG + chr3_1:1527581-1527600 None:intergenic 40.0%
GGAATGAAGCTGTTATGTGA+TGG - chr3_1:1527688-1527707 Msa0343420:intron 40.0%
! AGAGCATATGGTTTGGCTAA+AGG - chr3_1:1528044-1528063 Msa0343420:CDS 40.0%
TGTTGACATTGTGTCAACAG+TGG - chr3_1:1528124-1528143 Msa0343420:CDS 40.0%
TCAAATGGGGTCAGATATTC+TGG - chr3_1:1528650-1528669 Msa0343420:intron 40.0%
CAAATGGGGTCAGATATTCT+GGG - chr3_1:1528651-1528670 Msa0343420:intron 40.0%
! ATGCTGGGAAGATCAACTTT+TGG - chr3_1:1528790-1528809 Msa0343420:intron 40.0%
! TGCTGGGAAGATCAACTTTT+GGG - chr3_1:1528791-1528810 Msa0343420:intron 40.0%
TAACCACTTTAGCAACCACA+TGG + chr3_1:1528821-1528840 None:intergenic 40.0%
TTAACCATGACACAGTGAGA+AGG + chr3_1:1528867-1528886 None:intergenic 40.0%
ACTGTGTCATGGTTAATGCT+TGG - chr3_1:1528871-1528890 Msa0343420:intron 40.0%
AAAACTGTCTGGAAAGACAC+CGG - chr3_1:1528948-1528967 Msa0343420:intron 40.0%
! CTCCTCTTTTAATCTTGGCA+AGG + chr3_1:1528990-1529009 None:intergenic 40.0%
GTGTGGCCATTAAGACTAAT+AGG + chr3_1:1529383-1529402 None:intergenic 40.0%
CAGGCATCAAGAGGTTAAAA+CGG - chr3_1:1529876-1529895 Msa0343420:intron 40.0%
!! TACAGAGTGGAATTTGCTGA+TGG - chr3_1:1529899-1529918 Msa0343420:intron 40.0%
!! GAATTTTGACGCCATCGTAT+TGG - chr3_1:1529931-1529950 Msa0343420:intron 40.0%
GCACTAACGACATGTGAAAA+AGG - chr3_1:1530090-1530109 Msa0343420:intron 40.0%
TGGATAGGCTCATAGAAGAT+AGG + chr3_1:1530573-1530592 None:intergenic 40.0%
TAGTGAAACCAACAGCAAAG+AGG + chr3_1:1530748-1530767 None:intergenic 40.0%
! TTCACTAAACGTGGACTACT+TGG - chr3_1:1530761-1530780 Msa0343420:CDS 40.0%
CTGAAGATATTGAACGGTGT+TGG - chr3_1:1530810-1530829 Msa0343420:CDS 40.0%
GCATAATGTTATCAAGGGTG+TGG - chr3_1:1530957-1530976 Msa0343420:five_prime_UTR 40.0%
CTCCTCCTTGTCCATAAAAA+TGG - chr3_1:1530982-1531001 Msa0343420:five_prime_UTR 40.0%
GAGGAGGGTTATTTAAGGGA+AGG + chr3_1:1525687-1525706 None:intergenic 45.0%
TTGGCCCTCTTAGCTAAAGA+AGG + chr3_1:1525782-1525801 None:intergenic 45.0%
!! TGAGGATTGGTGGCAACTTT+TGG + chr3_1:1525801-1525820 None:intergenic 45.0%
TCTTGTTCGGTATCAGACCT+TGG - chr3_1:1526009-1526028 Msa0343420:three_prime_UTR 45.0%
! TTTGAAGAATCGAAGCGCCA+AGG + chr3_1:1526029-1526048 None:intergenic 45.0%
ATGAAGACGAAGACGATCGT+AGG + chr3_1:1526335-1526354 None:intergenic 45.0%
GCTGAGTTTGATGCTACACT+TGG - chr3_1:1526502-1526521 Msa0343420:intron 45.0%
! TTACCGAGTTTGTTTGTCGG+TGG - chr3_1:1526563-1526582 Msa0343420:intron 45.0%
CAACCACCGACAAACAAACT+CGG + chr3_1:1526569-1526588 None:intergenic 45.0%
!! GGGAAGAAAGTTTTGGTGGT+TGG - chr3_1:1526703-1526722 Msa0343420:intron 45.0%
GTGGTTGGATGTGGAAATTC+AGG - chr3_1:1526718-1526737 Msa0343420:intron 45.0%
TGATGCTGCTCCTTCTATTG+TGG - chr3_1:1526771-1526790 Msa0343420:intron 45.0%
!! CATCGGTTCCATTTCCGAAA+CGG + chr3_1:1526869-1526888 None:intergenic 45.0%
ATTCTCAAGCATGCCTAGCA+TGG - chr3_1:1527450-1527469 Msa0343420:intron 45.0%
TTCTCAAGCATGCCTAGCAT+GGG - chr3_1:1527451-1527470 Msa0343420:intron 45.0%
GTCATCTTCTATCCCATGCT+AGG + chr3_1:1527466-1527485 None:intergenic 45.0%
AGGAGGGGAAAAAAGCAACT+GGG + chr3_1:1527488-1527507 None:intergenic 45.0%
AAGGAGGGGAAAAAAGCAAC+TGG + chr3_1:1527489-1527508 None:intergenic 45.0%
TCATGGGAAGGAAAAAGGAG+GGG + chr3_1:1527503-1527522 None:intergenic 45.0%
CATCATGGGAAGGAAAAAGG+AGG + chr3_1:1527505-1527524 None:intergenic 45.0%
CATGGCCACCAACACAATTA+AGG - chr3_1:1527573-1527592 Msa0343420:intron 45.0%
AAGGTAAGAGCTTATGTGGG+AGG + chr3_1:1527617-1527636 None:intergenic 45.0%
ACTTAGTTGTGGAGATGCTG+TGG + chr3_1:1527720-1527739 None:intergenic 45.0%
! GCATATGGTTTGGCTAAAGG+TGG - chr3_1:1528047-1528066 Msa0343420:CDS 45.0%
! AACAGTGGTGCTAACGACAT+AGG - chr3_1:1528139-1528158 Msa0343420:CDS 45.0%
! GAGGGAGTATATAGTAGAGG+AGG + chr3_1:1528442-1528461 None:intergenic 45.0%
! ACGGAGGGAGTATATAGTAG+AGG + chr3_1:1528445-1528464 None:intergenic 45.0%
ATGAGTCAGATATTCCGGGA+CGG + chr3_1:1528464-1528483 None:intergenic 45.0%
ATCCTGCCAAGAGATATGCT+GGG - chr3_1:1528775-1528794 Msa0343420:intron 45.0%
GATCTTCCCAGCATATCTCT+TGG + chr3_1:1528784-1528803 None:intergenic 45.0%
!!! CAACTTTTGGGTTGTCCATG+TGG - chr3_1:1528803-1528822 Msa0343420:intron 45.0%
TGTCCATGTGGTTGCTAAAG+TGG - chr3_1:1528815-1528834 Msa0343420:intron 45.0%
ATGTAATCCACCAGTTGCAC+GGG + chr3_1:1528844-1528863 None:intergenic 45.0%
GATGTAATCCACCAGTTGCA+CGG + chr3_1:1528845-1528864 None:intergenic 45.0%
ACATCCTTCTCACTGTGTCA+TGG - chr3_1:1528860-1528879 Msa0343420:intron 45.0%
CTTGGCAATACAGAACGGTT+CGG - chr3_1:1528889-1528908 Msa0343420:intron 45.0%
!! CAATACAGAACGGTTCGGTT+TGG - chr3_1:1528894-1528913 Msa0343420:intron 45.0%
GCCCTTGCCAAGATTAAAAG+AGG - chr3_1:1528985-1529004 Msa0343420:intron 45.0%
!! CGTTTTAACCTCTTGATGCC+TGG + chr3_1:1529878-1529897 None:intergenic 45.0%
GAGGTTAAAACGGTACAGAG+TGG - chr3_1:1529886-1529905 Msa0343420:intron 45.0%
GTAACCAGTTGCCAATACGA+TGG + chr3_1:1529945-1529964 None:intergenic 45.0%
CTAAGGAAGATGGATACCCT+AGG - chr3_1:1530687-1530706 Msa0343420:CDS 45.0%
CATTAGGGAATGGCTTCCTA+GGG + chr3_1:1530706-1530725 None:intergenic 45.0%
CCTTTCCATCCATTAGGGAA+TGG + chr3_1:1530716-1530735 None:intergenic 45.0%
! CCATTCCCTAATGGATGGAA+AGG - chr3_1:1530713-1530732 Msa0343420:CDS 45.0%
! GAAAATGGCCTCTTTGCTGT+TGG - chr3_1:1530737-1530756 Msa0343420:CDS 45.0%
!! GCTGTTGGTTTCACTAAACG+TGG - chr3_1:1530752-1530771 Msa0343420:CDS 45.0%
! TGAACGGTGTTGGAAAGTTG+AGG - chr3_1:1530820-1530839 Msa0343420:CDS 45.0%
! AATTGCATTGTGGGCTGATC+TGG - chr3_1:1531249-1531268 Msa0343420:five_prime_UTR 45.0%
GCTCCTACTATCAATGGACC+TGG + chr3_1:1526208-1526227 None:intergenic 50.0%
! GGTCCATTGATAGTAGGAGC+AGG - chr3_1:1526208-1526227 Msa0343420:CDS 50.0%
GGTCCTGCTCCTACTATCAA+TGG + chr3_1:1526214-1526233 None:intergenic 50.0%
ATAGTAGGAGCAGGACCTTC+AGG - chr3_1:1526217-1526236 Msa0343420:CDS 50.0%
!! CACTTGGTTTTTGGAGGGTG+AGG - chr3_1:1526518-1526537 Msa0343420:intron 50.0%
!! TTTTTGGAGGGTGAGGAGTG+AGG - chr3_1:1526525-1526544 Msa0343420:intron 50.0%
!! TTTTGGAGGGTGAGGAGTGA+GGG - chr3_1:1526526-1526545 Msa0343420:intron 50.0%
GCAACTGCTGCATTGTGCAT+CGG + chr3_1:1526886-1526905 None:intergenic 50.0%
! GAGCTTATGTGGGAGGCTTT+TGG + chr3_1:1527610-1527629 None:intergenic 50.0%
CGCATCATGATCGTCGTTGT+TGG - chr3_1:1527831-1527850 Msa0343420:intron 50.0%
! AGTGGTGCTAACGACATAGG+TGG - chr3_1:1528142-1528161 Msa0343420:CDS 50.0%
! GTGGTGCTAACGACATAGGT+GGG - chr3_1:1528143-1528162 Msa0343420:CDS 50.0%
! TGGTGCTAACGACATAGGTG+GGG - chr3_1:1528144-1528163 Msa0343420:CDS 50.0%
ACTATATACTCCCTCCGTCC+CGG - chr3_1:1528447-1528466 Msa0343420:intron 50.0%
! TGGGGTCAGATATTCTGGGA+CGG - chr3_1:1528655-1528674 Msa0343420:intron 50.0%
!! GTCAGATATTCTGGGACGGA+GGG - chr3_1:1528659-1528678 Msa0343420:intron 50.0%
CATCCTGCCAAGAGATATGC+TGG - chr3_1:1528774-1528793 Msa0343420:intron 50.0%
TTCCCAGCATATCTCTTGGC+AGG + chr3_1:1528780-1528799 None:intergenic 50.0%
AAAGTGGTTACCCGTGCAAC+TGG - chr3_1:1528831-1528850 Msa0343420:intron 50.0%
!! CAGAACGGTTCGGTTTGGTT+CGG - chr3_1:1528899-1528918 Msa0343420:intron 50.0%
AAAGACACCGGTCCTAGATG+TGG - chr3_1:1528960-1528979 Msa0343420:intron 50.0%
AAGACACCGGTCCTAGATGT+GGG - chr3_1:1528961-1528980 Msa0343420:intron 50.0%
GGCCGTAACAATGAGGACAT+AGG - chr3_1:1529517-1529536 Msa0343420:intron 50.0%
CCATTAGGGAATGGCTTCCT+AGG + chr3_1:1530707-1530726 None:intergenic 50.0%
CCTAGGAAGCCATTCCCTAA+TGG - chr3_1:1530704-1530723 Msa0343420:CDS 50.0%
GGAAGCCATTCCCTAATGGA+TGG - chr3_1:1530708-1530727 Msa0343420:CDS 50.0%
!! TGGACTACTTGGTGCATCCA+TGG - chr3_1:1530772-1530791 Msa0343420:CDS 50.0%
CGAATTAAGGACGCCACCAA+AGG + chr3_1:1531040-1531059 None:intergenic 50.0%
!! TTGGTGGCGTCCTTAATTCG+TGG - chr3_1:1531040-1531059 Msa0343420:five_prime_UTR 50.0%
GCTGCTACTGCTAGTCCTGA+AGG + chr3_1:1526235-1526254 None:intergenic 55.0%
TTTGGAGGGTGAGGAGTGAG+GGG - chr3_1:1526527-1526546 Msa0343420:intron 55.0%
CGGTGGTTGATCGTTGCAAC+CGG - chr3_1:1526580-1526599 Msa0343420:intron 55.0%
TGCAACCGGAGAGAATGCTG+AGG - chr3_1:1526594-1526613 Msa0343420:intron 55.0%
AACCGGAGAGAATGCTGAGG+CGG - chr3_1:1526597-1526616 Msa0343420:intron 55.0%
AACCGCCTCAGCATTCTCTC+CGG + chr3_1:1526602-1526621 None:intergenic 55.0%
GAATGCTGAGGCGGTTGTAC+CGG - chr3_1:1526606-1526625 Msa0343420:intron 55.0%
GCGGTTGTACCGGAGATTGA+AGG - chr3_1:1526616-1526635 Msa0343420:intron 55.0%
! ATCGTTTTCCCAGCTGCTGC+AGG - chr3_1:1526952-1526971 Msa0343420:intron 55.0%
! TCGTTTTCCCAGCTGCTGCA+GGG - chr3_1:1526953-1526972 Msa0343420:intron 55.0%
! GGAGGCTTTTGGCCCTTGAT+AGG + chr3_1:1527599-1527618 None:intergenic 55.0%
GGTGCTAACGACATAGGTGG+GGG - chr3_1:1528145-1528164 Msa0343420:CDS 55.0%
GTCAGATATTCCGGGACGGA+GGG + chr3_1:1528460-1528479 None:intergenic 55.0%
AGTCAGATATTCCGGGACGG+AGG + chr3_1:1528461-1528480 None:intergenic 55.0%
!! GGTCAGATATTCTGGGACGG+AGG - chr3_1:1528658-1528677 Msa0343420:intron 55.0%
!! AGTTCTAGAGGACCCAACCG+AGG + chr3_1:1528925-1528944 None:intergenic 55.0%
TCTCCATAGCTCCCTCGTTC+AGG - chr3_1:1529847-1529866 Msa0343420:intron 55.0%
GTACCTGAACGAGGGAGCTA+TGG + chr3_1:1529853-1529872 None:intergenic 55.0%
AGGTACGTCCAGGCATCAAG+AGG - chr3_1:1529867-1529886 Msa0343420:intron 55.0%
! GACGCCATCGTATTGGCAAC+TGG - chr3_1:1529938-1529957 Msa0343420:intron 55.0%
ACTACAGCCCTGCAGCAGCT+GGG + chr3_1:1526963-1526982 None:intergenic 60.0%
GTGGTTACCCGTGCAACTGG+TGG - chr3_1:1528834-1528853 Msa0343420:intron 60.0%
!! GGTTCGGTTTGGTTCGGCCT+CGG - chr3_1:1528905-1528924 Msa0343420:intron 60.0%
!! GGTTTGGTTCGGCCTCGGTT+GGG - chr3_1:1528910-1528929 Msa0343420:intron 60.0%
! AGGGCACCCACATCTAGGAC+CGG + chr3_1:1528970-1528989 None:intergenic 60.0%
!! TGGCAAGGGCACCCACATCT+AGG + chr3_1:1528975-1528994 None:intergenic 60.0%
TCCCTCGTTCAGGTACGTCC+AGG - chr3_1:1529857-1529876 Msa0343420:intron 60.0%
GCCTGGACGTACCTGAACGA+GGG + chr3_1:1529861-1529880 None:intergenic 60.0%
TGCCTGGACGTACCTGAACG+AGG + chr3_1:1529862-1529881 None:intergenic 60.0%
GAGGGTGAGGAGTGAGGGGA+AGG - chr3_1:1526531-1526550 Msa0343420:intron 65.0%
GGTGAGGAGTGAGGGGAAGG+CGG - chr3_1:1526534-1526553 Msa0343420:intron 65.0%
GTGAGGAGTGAGGGGAAGGC+GGG - chr3_1:1526535-1526554 Msa0343420:intron 65.0%
GAGTGAGGGGAAGGCGGGAA+TGG - chr3_1:1526540-1526559 Msa0343420:intron 65.0%
CACTACAGCCCTGCAGCAGC+TGG + chr3_1:1526964-1526983 None:intergenic 65.0%
!! CGGTTTGGTTCGGCCTCGGT+TGG - chr3_1:1528909-1528928 Msa0343420:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 1525679 1531297 1525679 ID=Msa0343420;Name=Msa0343420
chr3_1 mRNA 1525679 1531297 1525679 ID=Msa0343420-mRNA-1;Parent=Msa0343420;Name=Msa0343420-mRNA-1;_AED=0.02;_eAED=0.02;_QI=406|1|1|1|1|1|4|423|431
chr3_1 exon 1525679 1526305 1525679 ID=Msa0343420-mRNA-1:exon:505;Parent=Msa0343420-mRNA-1
chr3_1 exon 1526985 1527107 1526985 ID=Msa0343420-mRNA-1:exon:504;Parent=Msa0343420-mRNA-1
chr3_1 exon 1527959 1528207 1527959 ID=Msa0343420-mRNA-1:exon:503;Parent=Msa0343420-mRNA-1
chr3_1 exon 1530172 1531297 1530172 ID=Msa0343420-mRNA-1:exon:502;Parent=Msa0343420-mRNA-1
chr3_1 five_prime_UTR 1530892 1531297 1530892 ID=Msa0343420-mRNA-1:five_prime_utr;Parent=Msa0343420-mRNA-1
chr3_1 CDS 1530172 1530891 1530172 ID=Msa0343420-mRNA-1:cds;Parent=Msa0343420-mRNA-1
chr3_1 CDS 1527959 1528207 1527959 ID=Msa0343420-mRNA-1:cds;Parent=Msa0343420-mRNA-1
chr3_1 CDS 1526985 1527107 1526985 ID=Msa0343420-mRNA-1:cds;Parent=Msa0343420-mRNA-1
chr3_1 CDS 1526102 1526305 1526102 ID=Msa0343420-mRNA-1:cds;Parent=Msa0343420-mRNA-1
chr3_1 three_prime_UTR 1525679 1526101 1525679 ID=Msa0343420-mRNA-1:three_prime_utr;Parent=Msa0343420-mRNA-1
Gene Sequence

>Msa0343420

ATGGACAGTTATCTAAGAGAATTAGAAGGAAAACAAGCACATGATCCTTTATTCATAGAAAAAATGATCAACAACAAGAACAAGAATTCAACTTCTTCAAGTGATAGATGTTTATGGATTCCAGGTCCATTGATAGTAGGAGCAGGACCTTCAGGACTAGCAGTAGCAGCATATCTAAAACAAAAAGGTGTTCCAAGTTTAATACTAGAAAGATCAAATTGTATAGCTTCACTATGGAAGCTAAAAACCTACGATCGTCTTCGTCTTCATTTACCAAAACAAGTTTGTGAGCTTCCTTTAATGGAATTCCCTAGTGGTTTTCCAACATATCCAACAAAGCAACAATTCATAGAGTATTTGGAAAGTTATTCCAAAAATTTCGATATTAGGCCTTGGTTCAATGAGACAGTTATGCATGCTGAGTTTGATGCTACACTTGGTTTTTGGAGGGTGAGGAGTGAGGGGAAGGCGGGAATGGTTACCGAGTTTGTTTGTCGGTGGTTGATCGTTGCAACCGGAGAGAATGCTGAGGCGGTTGTACCGGAGATTGAAGGAGTTGATGAATTTGGTGGTAGTATTAGGCATACTAGTTTGTATAAAAGTGGTGAAGAGTTTAGAGGGAAGAAAGTTTTGGTGGTTGGATGTGGAAATTCAGGTATGGAAGTTTGTTTGGATCTTTGTAATCATGATGCTGCTCCTTCTATTGTGGTTAGAGATTCAGTACACATCCTGCCAAGAGATATGCTGGGAAGATCAACTTTTGGGTTGTCCATGTGGTTGCTAAAGTGGTTACCCGTGCAACTGGTGGATTACATCCTTCTCACTGTGTCATGGTTAATGCTTGGCAATACAGAACGGTTCGGTTTGGTTCGGCCTCGGTTGGGTCCTCTAGAACTCAAAAAACTGTCTGGAAAGACACCGGTCCTAGATGTGGGTGCCCTTGCCAAGATTAAAAGAGGAGACATCAAGGTACGTCCAGGCATCAAGAGGTTAAAACGGTACAGAGTGGAATTTGCTGATGGAAGTACAGAGAATTTTGACGCCATCGTATTGGCAACTGGTTACAAAAGTAATGTACCCTATTGGTTAAAGGATAAGGGTATGTTCTCTAAGGAAGATGGATACCCTAGGAAGCCATTCCCTAATGGATGGAAAGGTGAAAATGGCCTCTTTGCTGTTGGTTTCACTAAACGTGGACTACTTGGTGCATCCATGGATGCAAAAAATATAGCTGAAGATATTGAACGGTGTTGGAAAGTTGAGGCAAAGCATATATTTCAACAATCAAATTCATGA
Protein sequence

>Msa0343420

MDSYLRELEGKQAHDPLFIEKMINNKNKNSTSSSDRCLWIPGPLIVGAGPSGLAVAAYLKQKGVPSLILERSNCIASLWKLKTYDRLRLHLPKQVCELPLMEFPSGFPTYPTKQQFIEYLESYSKNFDIRPWFNETVMHAEFDATLGFWRVRSEGKAGMVTEFVCRWLIVATGENAEAVVPEIEGVDEFGGSIRHTSLYKSGEEFRGKKVLVVGCGNSGMEVCLDLCNHDAAPSIVVRDSVHILPRDMLGRSTFGLSMWLLKWLPVQLVDYILLTVSWLMLGNTERFGLVRPRLGPLELKKLSGKTPVLDVGALAKIKRGDIKVRPGIKRLKRYRVEFADGSTENFDAIVLATGYKSNVPYWLKDKGMFSKEDGYPRKPFPNGWKGENGLFAVGFTKRGLLGASMDAKNIAEDIERCWKVEAKHIFQQSNS*