AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0008290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0008290 MtrunA17_Chr1g0147221 97.912 431 8 1 1 431 1 430 0.0 865
Msa0008290 MtrunA17_Chr3g0139441 75.765 425 98 2 1 424 1 421 0.0 664
Msa0008290 MtrunA17_Chr6g0485621 65.176 425 131 5 4 423 5 417 0.0 569
Msa0008290 MtrunA17_Chr1g0182991 61.353 414 157 3 19 431 1 412 0.0 521
Msa0008290 MtrunA17_Chr1g0169111 60.051 393 153 2 35 424 94 485 2.65e-178 507
Msa0008290 MtrunA17_Chr1g0148801 61.658 386 142 3 36 420 9 389 4.81e-176 498
Msa0008290 MtrunA17_Chr7g0262591 58.396 399 159 3 34 431 15 407 1.56e-174 494
Msa0008290 MtrunA17_Chr7g0262471 56.832 322 132 3 111 431 213 528 2.31e-128 381
Msa0008290 MtrunA17_Chr7g0268611 45.040 373 198 3 44 414 9 376 3.34e-117 347
Msa0008290 MtrunA17_Chr7g0268621 47.059 374 189 5 44 414 7 374 1.58e-114 340
Msa0008290 MtrunA17_Chr8g0350371 43.467 375 205 3 44 416 7 376 3.71e-114 339
Msa0008290 MtrunA17_Chr5g0412881 42.971 377 208 3 44 418 7 378 1.93e-112 335
Msa0008290 MtrunA17_Chr3g0125711 43.223 391 212 5 44 431 8 391 4.78e-107 322
Msa0008290 MtrunA17_Chr3g0125691 43.316 374 205 3 44 415 8 376 5.16e-107 322
Msa0008290 MtrunA17_Chr3g0125701 43.316 374 205 3 44 415 8 376 8.63e-107 321
Msa0008290 MtrunA17_Chr4g0025641 42.714 199 113 1 44 241 17 215 1.05e-50 171
Msa0008290 MtrunA17_Chr4g0025651 41.209 182 103 3 249 429 4 182 3.17e-42 147
Msa0008290 MtrunA17_Chr3g0129991 36.975 119 74 1 101 218 1 119 4.44e-26 102
Msa0008290 MtrunA17_Chr3g0091441 24.251 367 171 12 45 373 15 312 9.68e-14 72.8
Msa0008290 MtrunA17_Chr8g0352461 24.880 209 129 6 45 227 6 212 1.66e-13 72.0
Msa0008290 MtrunA17_Chr2g0304721 25.403 248 142 11 45 252 7 251 5.90e-12 67.4
Msa0008290 MtrunA17_Chr2g0305211 24.576 236 137 11 45 242 7 239 9.00e-12 67.0
Msa0008290 MtrunA17_Chr2g0305231 24.576 236 137 11 45 242 7 239 9.00e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0008290 AT5G25620.2 66.667 420 125 4 6 423 7 413 0.0 570
Msa0008290 AT5G25620.1 66.667 420 125 4 6 423 7 413 0.0 570
Msa0008290 AT4G13260.1 65.860 413 126 3 4 415 3 401 0.0 557
Msa0008290 AT1G04610.1 60.000 395 153 2 34 424 28 421 1.17e-178 506
Msa0008290 AT4G28720.1 56.867 415 174 3 19 429 1 414 4.21e-177 501
Msa0008290 AT1G04180.1 58.354 413 169 3 19 430 1 411 6.76e-175 496
Msa0008290 AT5G43890.1 58.191 409 167 3 19 424 1 408 1.06e-174 495
Msa0008290 AT2G33230.1 58.753 417 156 3 22 424 1 415 3.26e-173 492
Msa0008290 AT5G11320.1 58.793 381 151 2 38 418 12 386 3.05e-165 471
Msa0008290 AT4G32540.1 56.313 396 167 3 29 423 7 397 2.37e-162 464
Msa0008290 AT4G32540.2 56.281 398 166 4 29 423 7 399 8.34e-161 460
Msa0008290 AT4G13260.2 64.396 323 100 3 4 325 3 311 3.40e-147 421
Msa0008290 AT5G11320.2 58.716 327 130 1 38 364 12 333 1.36e-140 406
Msa0008290 AT4G13260.3 67.010 291 95 1 126 415 8 298 9.12e-138 397
Msa0008290 AT1G21430.1 48.267 375 184 5 44 415 10 377 1.28e-119 354
Msa0008290 AT1G48910.1 44.772 373 199 3 44 414 6 373 4.86e-116 345
Msa0008290 AT5G61290.1 27.679 224 115 7 45 228 18 234 8.82e-14 73.6
Msa0008290 AT5G07800.1 26.818 220 122 7 45 227 18 235 3.55e-13 71.6
Msa0008290 AT1G62560.2 22.511 231 141 5 45 246 15 236 5.97e-13 70.5
Msa0008290 AT1G62560.1 22.511 231 141 5 45 246 15 236 6.33e-13 70.9
Msa0008290 AT5G45180.1 24.148 352 200 14 45 355 15 340 9.72e-13 70.1
Msa0008290 AT1G65860.1 21.834 229 144 4 45 246 15 235 6.91e-12 67.4
Msa0008290 AT1G12200.2 24.900 249 141 9 59 270 30 269 9.75e-12 66.6
Msa0008290 AT1G12200.1 25.523 239 132 9 59 260 30 259 1.20e-11 66.6

Find 150 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAATATTGAGTTCTTTA+TGG 0.107363 1_1:+11941891 None:intergenic
GCAACAATTCATAGAGTATT+TGG 0.149405 1_1:-11941383 Msa0008290:CDS
CTTCAAGTGATAGATGTTTA+TGG 0.160401 1_1:-11941627 Msa0008290:CDS
AGTTTGTGAGCTTCCTTTAA+TGG 0.176443 1_1:-11941440 Msa0008290:CDS
ATTAAATGTTATTACGTAAA+TGG 0.197012 1_1:-11936902 Msa0008290:three_prime_UTR
ATAATTGAATCCACGAATTA+AGG 0.208791 1_1:+11936751 None:intergenic
TTGAAAATATGTAATGAAAA+AGG 0.217260 1_1:+11941745 None:intergenic
ATTGAAGGAGTTGATGAATT+TGG 0.225886 1_1:-11941175 Msa0008290:CDS
TGAGGATTGGTGGCAACTTT+TGG 0.257070 1_1:+11942008 None:intergenic
ATGAATTTGGTGGTAGTATT+AGG 0.259873 1_1:-11941162 Msa0008290:CDS
GATTATTTGTTTAATTATTT+AGG 0.262592 1_1:-11936929 Msa0008290:three_prime_UTR
TATGGTTGGTTGGTTGGTTT+TGG 0.271083 1_1:+11941909 None:intergenic
ATGCTGGGAAAATCAACTTT+TGG 0.272060 1_1:-11939016 Msa0008290:CDS
GGAAGCTCACAAACTTGTTT+TGG 0.287110 1_1:+11941448 None:intergenic
GGTTGAGTTTCAAGAGAAAA+AGG 0.299604 1_1:+11941963 None:intergenic
GGTGAGGAGTGAGGGGAAGG+CGG 0.303591 1_1:-11941272 Msa0008290:CDS
GTGGTTGGATGTGGAAATTC+AGG 0.305649 1_1:-11941088 Msa0008290:CDS
TCTATGAATTGTTGCTTTGT+TGG 0.308851 1_1:+11941391 None:intergenic
CCACTAGGGAATTCCATTAA+AGG 0.311291 1_1:+11941427 None:intergenic
AATTGCATTGTGGGCTGATC+TGG 0.314582 1_1:-11936552 Msa0008290:three_prime_UTR
TTCAGGTATGGAAGTTTGTT+TGG 0.318132 1_1:-11941071 Msa0008290:CDS
ATAACTTACCTTTAACCAAT+AGG 0.321026 1_1:+11937826 None:intergenic
CGGTTTGGTTCGGCCTCGGT+TGG 0.332146 1_1:-11938897 Msa0008290:CDS
TAATGTACCCTATTGGTTAA+AGG 0.336947 1_1:-11937834 Msa0008290:intron
GTTTAGAGGGAAGAAAGTTT+TGG 0.342078 1_1:-11941110 Msa0008290:CDS
GTGAGGAGTGAGGGGAAGGC+GGG 0.346356 1_1:-11941271 Msa0008290:CDS
TTTCACCTTTCCATCCATTA+GGG 0.348305 1_1:+11937084 None:intergenic
AATGGATGGAAAGGTGAAAA+TGG 0.349533 1_1:-11937080 Msa0008290:CDS
ATAGTAGGAGCAGGACCTTC+AGG 0.355072 1_1:-11941589 Msa0008290:CDS
GATAGATGTTTATGGATTCC+AGG 0.359227 1_1:-11941619 Msa0008290:CDS
TAACTTACCTTTAACCAATA+GGG 0.359812 1_1:+11937827 None:intergenic
TTCAATATATTCTCAAAGTA+AGG 0.363434 1_1:+11936725 None:intergenic
GCAGCATATCTAAAACAAAA+AGG 0.363705 1_1:-11941556 Msa0008290:CDS
CCAAACCTTCTTTAGCTAAG+AGG 0.370654 1_1:-11942032 Msa0008290:five_prime_UTR
TGTTGCTTTGTTGGATATGT+TGG 0.373958 1_1:+11941400 None:intergenic
CCTCTTAGCTAAAGAAGGTT+TGG 0.377834 1_1:+11942032 None:intergenic
CCATTAGGGAATGGCTTCCT+AGG 0.378690 1_1:+11937098 None:intergenic
AGTGGAGTTTAAGAATGAAT+TGG 0.382785 1_1:+11941848 None:intergenic
CAATGGAGGAGGGTTACTTA+AGG 0.396397 1_1:+11942117 None:intergenic
GGTTCGGTTTGGTTCGGCCT+CGG 0.399694 1_1:-11938901 Msa0008290:CDS
ACAAAAGTAATGTACCCTAT+TGG 0.401012 1_1:-11937841 Msa0008290:CDS
GACGCCATCGTATTGGCAAC+TGG 0.408426 1_1:-11937866 Msa0008290:CDS
GGATAAGGGTATGTTCTCTA+AGG 0.417839 1_1:-11937132 Msa0008290:CDS
CCTAGGAAGCCATTCCCTAA+TGG 0.421132 1_1:-11937098 Msa0008290:CDS
AATGGAGGAGGGTTACTTAA+GGG 0.422706 1_1:+11942118 None:intergenic
TTCACTAAACGTGGACTACT+TGG 0.424605 1_1:-11937041 Msa0008290:CDS
GAGGGTGAGGAGTGAGGGGA+AGG 0.436723 1_1:-11941275 Msa0008290:CDS
GAATCTCTAACCACAATAGA+AGG 0.439167 1_1:+11941025 None:intergenic
CAATACAGAACGGTTCGGTT+TGG 0.439433 1_1:-11938912 Msa0008290:CDS
TTCCCAGCATATCTCTTGGC+AGG 0.440777 1_1:+11939029 None:intergenic
GTTCTTTATGGTTGGTTGGT+TGG 0.443759 1_1:+11941903 None:intergenic
GTTTGACTTGCTATAGAGAA+AGG 0.444621 1_1:-11936592 Msa0008290:three_prime_UTR
CAAATTGTATAGCTTCACTA+TGG 0.453940 1_1:-11941507 Msa0008290:CDS
CATCCTGCCAAGAGATATGC+TGG 0.456200 1_1:-11939032 Msa0008290:CDS
TTGGTGGTGTCCTTAATTCG+TGG 0.460258 1_1:-11936761 Msa0008290:three_prime_UTR
TGAGAAAATGTTTCCTTTGG+TGG 0.461264 1_1:-11936777 Msa0008290:three_prime_UTR
GAGTGAGGGGAAGGCGGGAA+TGG 0.461670 1_1:-11941266 Msa0008290:CDS
ATATGTGCATAATGTTATCA+AGG 0.461773 1_1:-11936851 Msa0008290:three_prime_UTR
TTGGCCCTCTTAGCTAAAGA+AGG 0.469696 1_1:+11942027 None:intergenic
AATATTGAGTTCTTTATGGT+TGG 0.473285 1_1:+11941895 None:intergenic
CGGTGGTTGATCGTTGCAAC+CGG 0.474729 1_1:-11941226 Msa0008290:CDS
ATGGTATATGTGCAGGATAA+GGG 0.476167 1_1:-11937146 Msa0008290:intron
CAGAACGGTTCGGTTTGGTT+CGG 0.479807 1_1:-11938907 Msa0008290:CDS
TGGTGAGAAAATGTTTCCTT+TGG 0.480626 1_1:-11936780 Msa0008290:three_prime_UTR
GAATGCTGAGGCGGTTGTAC+CGG 0.482930 1_1:-11941200 Msa0008290:CDS
ACAAGAAAATAGAGAGCAAA+GGG 0.483050 1_1:+11941814 None:intergenic
GGTCCTGCTCCTACTATCAA+TGG 0.486209 1_1:+11941595 None:intergenic
AACATTATGCACATATGTAA+TGG 0.486939 1_1:+11936858 None:intergenic
AAAAGTGGTGAAGAGTTTAG+AGG 0.487823 1_1:-11941124 Msa0008290:CDS
AAAATTTCGATATTAGGCCT+TGG 0.488183 1_1:-11941348 Msa0008290:CDS
TTTGACTTGCTATAGAGAAA+GGG 0.488459 1_1:-11936591 Msa0008290:three_prime_UTR
TGTCCATGTGGTTGCTAAAG+TGG 0.490674 1_1:-11938991 Msa0008290:CDS
CTGAAGATATTGAACGGTGT+TGG 0.492435 1_1:-11936992 Msa0008290:CDS
CTTGGCAATACAGAACGGTT+CGG 0.494535 1_1:-11938917 Msa0008290:CDS
GAAAATGGCCTCTTTGCTGT+TGG 0.494708 1_1:-11937065 Msa0008290:CDS
TGGTTACCGAGTTTGTTTGT+CGG 0.495604 1_1:-11941246 Msa0008290:CDS
TGGCAAGGGCACCCACATCT+AGG 0.496006 1_1:+11938834 None:intergenic
TTGAGTTCTTTATGGTTGGT+TGG 0.496063 1_1:+11941899 None:intergenic
AAAGTGGTGAAGAGTTTAGA+GGG 0.496476 1_1:-11941123 Msa0008290:CDS
AAAGTGGTTACCCGTGCAAC+TGG 0.496540 1_1:-11938975 Msa0008290:CDS
CCTTTCCATCCATTAGGGAA+TGG 0.499153 1_1:+11937089 None:intergenic
GATCTTTCTAGTATTAAACT+TGG 0.510703 1_1:+11941529 None:intergenic
GGTTTGGTTCGGCCTCGGTT+GGG 0.511085 1_1:-11938896 Msa0008290:CDS
TCATCAACTCCTTCAATCTC+CGG 0.512367 1_1:+11941181 None:intergenic
TGTTATTACGTAAATGGTGA+TGG 0.519706 1_1:-11936896 Msa0008290:three_prime_UTR
TCTTGTTCGGTATCAGACCT+TGG 0.519938 1_1:-11941797 Msa0008290:five_prime_UTR
CAAACCTTCTTTAGCTAAGA+GGG 0.521997 1_1:-11942031 Msa0008290:five_prime_UTR
AGTTATCTAAGAGAATTAGA+AGG 0.522034 1_1:-11941715 Msa0008290:CDS
GCTGAGTTTGATGCTACACT+TGG 0.526718 1_1:-11941304 Msa0008290:CDS
TTTGGAGGGTGAGGAGTGAG+GGG 0.529144 1_1:-11941279 Msa0008290:CDS
GGTATGTTCTCTAAGGAAGA+TGG 0.529812 1_1:-11937125 Msa0008290:CDS
TGTTTGAAATTGAAAACTGC+AGG 0.531962 1_1:+11941942 None:intergenic
ATTCCAGGTCCATTGATAGT+AGG 0.534394 1_1:-11941604 Msa0008290:CDS
AACCGCCTCAGCATTCTCTC+CGG 0.535999 1_1:+11941207 None:intergenic
ATAGCAAGTCAAACCTACAT+AGG 0.536740 1_1:+11936601 None:intergenic
CATACTAGTTTGTATAAAAG+TGG 0.538558 1_1:-11941139 Msa0008290:CDS
ATGTAATCCACCAGTTGCAC+GGG 0.546866 1_1:+11938965 None:intergenic
TGATGCTGCTCCTTCTATTG+TGG 0.549061 1_1:-11941035 Msa0008290:CDS
TGGACTACTTGGTGCATCCA+TGG 0.549422 1_1:-11937030 Msa0008290:CDS
ACATCCTTCTCACTGTGTCA+TGG 0.550548 1_1:-11938946 Msa0008290:CDS
TCCCTCGTTCAGGTACGTCC+AGG 0.553289 1_1:-11937947 Msa0008290:intron
GGATATGTTGGAAAACCACT+AGG 0.555382 1_1:+11941412 None:intergenic
AACAAGAAAATAGAGAGCAA+AGG 0.559557 1_1:+11941813 None:intergenic
GATTAAAAGAGGAGACATCA+AGG 0.563954 1_1:-11938810 Msa0008290:intron
CCATTCCCTAATGGATGGAA+AGG 0.565023 1_1:-11937089 Msa0008290:CDS
GCCCTTGCCAAGATTAAAAG+AGG 0.565947 1_1:-11938821 Msa0008290:CDS
CCTTTAATGGAATTCCCTAG+TGG 0.567347 1_1:-11941427 Msa0008290:CDS
GCGGTTGTACCGGAGATTGA+AGG 0.568267 1_1:-11941190 Msa0008290:CDS
CAGGCATCAAGAGGTTAAAA+CGG 0.572356 1_1:-11937928 Msa0008290:CDS
GGAAGCCATTCCCTAATGGA+TGG 0.574345 1_1:-11937094 Msa0008290:CDS
GCTGTTGGTTTCACTAAACG+TGG 0.576427 1_1:-11937050 Msa0008290:CDS
GAAGGAGTTGATGAATTTGG+TGG 0.576519 1_1:-11941172 Msa0008290:CDS
AAAGACACCGGTCCTAGATG+TGG 0.578940 1_1:-11938846 Msa0008290:CDS
GGTCCATTGATAGTAGGAGC+AGG 0.584095 1_1:-11941598 Msa0008290:CDS
GATGTAATCCACCAGTTGCA+CGG 0.587259 1_1:+11938964 None:intergenic
GCTGCTACTGCTAGTCCTGA+AGG 0.587967 1_1:+11941574 None:intergenic
GTGGTTACCCGTGCAACTGG+TGG 0.590830 1_1:-11938972 Msa0008290:CDS
AGGGCACCCACATCTAGGAC+CGG 0.591712 1_1:+11938839 None:intergenic
TACAGAGTGGAATTTGCTGA+TGG 0.592027 1_1:-11937905 Msa0008290:CDS
TTTGACGAATCGAAGCGCCA+AGG 0.598943 1_1:+11941780 None:intergenic
CTAAGGAAGATGGATACCCT+AGG 0.600641 1_1:-11937115 Msa0008290:CDS
GAGGAGGGTTACTTAAGGGA+AGG 0.602607 1_1:+11942122 None:intergenic
CATTAGGGAATGGCTTCCTA+GGG 0.603860 1_1:+11937099 None:intergenic
TGAACGGTGTTGGAAAGTTG+AGG 0.604949 1_1:-11936982 Msa0008290:CDS
GCTCCTACTATCAATGGACC+TGG 0.607612 1_1:+11941601 None:intergenic
TATGTGCATAATGTTATCAA+GGG 0.608213 1_1:-11936850 Msa0008290:three_prime_UTR
TATTACGTAAATGGTGATGG+AGG 0.615148 1_1:-11936893 Msa0008290:three_prime_UTR
TGGATGTGGAAATTCAGGTA+TGG 0.622494 1_1:-11941083 Msa0008290:CDS
ACTGTGTCATGGTTAATGCT+TGG 0.622906 1_1:-11938935 Msa0008290:CDS
CGAATTAAGGACACCACCAA+AGG 0.627049 1_1:+11936764 None:intergenic
AGGTACGTCCAGGCATCAAG+AGG 0.629400 1_1:-11937937 Msa0008290:CDS
TAATGCTTGGCAATACAGAA+CGG 0.631117 1_1:-11938922 Msa0008290:CDS
TAGTGAAACCAACAGCAAAG+AGG 0.634282 1_1:+11937057 None:intergenic
AAGACACCGGTCCTAGATGT+GGG 0.638855 1_1:-11938845 Msa0008290:CDS
ATGAAGACGAAGACGATCGT+AGG 0.641325 1_1:+11941474 None:intergenic
GTAACCAGTTGCCAATACGA+TGG 0.642598 1_1:+11937862 None:intergenic
TTACCGAGTTTGTTTGTCGG+TGG 0.653194 1_1:-11941243 Msa0008290:CDS
TTAACCATGACACAGTGAGA+AGG 0.654806 1_1:+11938942 None:intergenic
GAGGTTAAAACGGTACAGAG+TGG 0.654866 1_1:-11937918 Msa0008290:CDS
CAACCACCGACAAACAAACT+CGG 0.654999 1_1:+11941240 None:intergenic
ATATAGCTGAAGATATTGAA+CGG 0.658373 1_1:-11936998 Msa0008290:CDS
GATATGTTGGAAAACCACTA+GGG 0.658620 1_1:+11941413 None:intergenic
AACCGGAGAGAATGCTGAGG+CGG 0.661182 1_1:-11941209 Msa0008290:CDS
GCATAATGTTATCAAGGGTG+TGG 0.661386 1_1:-11936845 Msa0008290:three_prime_UTR
TAACCACTTTAGCAACCACA+TGG 0.668567 1_1:+11938988 None:intergenic
AAAACTGTCTGGAAAGACAC+CGG 0.678715 1_1:-11938858 Msa0008290:CDS
AGTTCTAGAGGACCCAACCG+AGG 0.681521 1_1:+11938884 None:intergenic
ATCCTGCCAAGAGATATGCT+GGG 0.697559 1_1:-11939031 Msa0008290:CDS
ATAACTGTCTCATTGAACCA+AGG 0.702457 1_1:+11941331 None:intergenic
TGCAACCGGAGAGAATGCTG+AGG 0.712718 1_1:-11941212 Msa0008290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAATTATA+CGG - chr1_1:11941093-11941112 Msa0008290:CDS 0.0%
!! AAAAAAAAAAAAAGAGAAAA+AGG + chr1_1:11938496-11938515 None:intergenic 10.0%
!! ACATTATAAAATATTTACAT+TGG - chr1_1:11939080-11939099 Msa0008290:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr1_1:11939474-11939493 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr1_1:11939475-11939494 None:intergenic 10.0%
!!! AGATATTTTTAATAAATTGA+CGG - chr1_1:11940418-11940437 Msa0008290:intron 10.0%
!! GATTATTTGTTTAATTATTT+AGG - chr1_1:11941736-11941755 Msa0008290:exon 10.0%
!!! TTAGTTTATTAATTTTTTTG+TGG - chr1_1:11941994-11942013 Msa0008290:five_prime_UTR 10.0%
!! TTTAAATATTGAGTTCTTTA+TGG + chr1_1:11936777-11936796 None:intergenic 15.0%
!! TTGAAAATATGTAATGAAAA+AGG + chr1_1:11936923-11936942 None:intergenic 15.0%
!!! TTCATTACATATTTTCAAAA+TGG - chr1_1:11936925-11936944 Msa0008290:three_prime_UTR 15.0%
!!! ATCATTTTTTCTATGAATAA+AGG + chr1_1:11936992-11937011 None:intergenic 15.0%
!!! TATAAAGTTGTTTTTGTTTT+TGG - chr1_1:11937882-11937901 Msa0008290:CDS 15.0%
!!! GTAACTAATTTTTTTTAAGA+AGG + chr1_1:11938056-11938075 None:intergenic 15.0%
!! TCTAATATAGCATATAAAAT+AGG - chr1_1:11938151-11938170 Msa0008290:intron 15.0%
!!! ATTCAAAAATACTTTTGAAA+TGG + chr1_1:11938234-11938253 None:intergenic 15.0%
!!! TGCTATTTTTCATATTATTA+AGG + chr1_1:11938635-11938654 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr1_1:11939473-11939492 None:intergenic 15.0%
!! AATCAAATCATACTTTATTA+AGG - chr1_1:11940098-11940117 Msa0008290:intron 15.0%
!! AAAATTCTAAACAATGAAAA+CGG - chr1_1:11940888-11940907 Msa0008290:intron 15.0%
!!! AATGAAAATATGTTTTTACT+TGG - chr1_1:11941127-11941146 Msa0008290:CDS 15.0%
!! AATAATACAAATAACTGAAA+TGG - chr1_1:11941500-11941519 Msa0008290:CDS 15.0%
!! ATTAAATGTTATTACGTAAA+TGG - chr1_1:11941763-11941782 Msa0008290:five_prime_UTR 15.0%
!!! TTTTTTTCTTTCCATTTTTA+TGG + chr1_1:11941859-11941878 None:intergenic 15.0%
!! TGGAAAGAAAAAAAAAAATA+TGG - chr1_1:11941865-11941884 Msa0008290:five_prime_UTR 15.0%
!!! TAATTTTTTTGTGGTTATTT+TGG - chr1_1:11942003-11942022 Msa0008290:five_prime_UTR 15.0%
!!! AATTTTTTTGTGGTTATTTT+GGG - chr1_1:11942004-11942023 Msa0008290:five_prime_UTR 15.0%
!! ATTCCAAAAATTTCGATATT+AGG - chr1_1:11937311-11937330 Msa0008290:intron 20.0%
!! AGAAAGAAAAACAAAGTAAA+AGG + chr1_1:11937689-11937708 None:intergenic 20.0%
!!! GTATGTTTTGAATAAAAACA+GGG + chr1_1:11937927-11937946 None:intergenic 20.0%
!!! AGTATGTTTTGAATAAAAAC+AGG + chr1_1:11937928-11937947 None:intergenic 20.0%
!!! ATATTGAATTTTATGCTACA+AGG + chr1_1:11937986-11938005 None:intergenic 20.0%
!! AATTTCCATGTTTCTTAATT+AGG + chr1_1:11938024-11938043 None:intergenic 20.0%
!!! CATGATATTTCACTTTTTTT+GGG - chr1_1:11938287-11938306 Msa0008290:intron 20.0%
!! GAAAAATAGCACTTAAATTA+TGG - chr1_1:11938644-11938663 Msa0008290:intron 20.0%
!!! TATCTAACACTTAAAGATTT+TGG - chr1_1:11938787-11938806 Msa0008290:intron 20.0%
!!! ATCTAACACTTAAAGATTTT+GGG - chr1_1:11938788-11938807 Msa0008290:intron 20.0%
!! GTTGAAAATCTTTATGATAA+AGG - chr1_1:11938942-11938961 Msa0008290:CDS 20.0%
!! ATCAAAAATCTTAAGATCTT+AGG + chr1_1:11939153-11939172 None:intergenic 20.0%
!!! TATTTTGAGACACTTTTTTT+TGG + chr1_1:11939348-11939367 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG + chr1_1:11939450-11939469 None:intergenic 20.0%
!!! GAGTACTTTTTTATAGAAAA+AGG - chr1_1:11939540-11939559 Msa0008290:intron 20.0%
!!! TTCGACATTAGTTTTAAATA+AGG - chr1_1:11940315-11940334 Msa0008290:intron 20.0%
!! CACAATCAAACAATTATTAT+AGG - chr1_1:11940357-11940376 Msa0008290:intron 20.0%
!! ATAGTAGTTAAATCTTTAGT+AGG - chr1_1:11940489-11940508 Msa0008290:intron 20.0%
!!! ATTTTTAAAGAGTGCATAAT+GGG + chr1_1:11940868-11940887 None:intergenic 20.0%
!!! TATTTTTAAAGAGTGCATAA+TGG + chr1_1:11940869-11940888 None:intergenic 20.0%
!!! AAGCTTTTTTATTTCGAATA+AGG - chr1_1:11941381-11941400 Msa0008290:CDS 20.0%
!! TATTTCGAATAAGGAAAATA+CGG - chr1_1:11941390-11941409 Msa0008290:CDS 20.0%
!!! ATTTTCAAAATTCAGATAGA+TGG + chr1_1:11941456-11941475 None:intergenic 20.0%
!! TTCAATATATTCTCAAAGTA+AGG + chr1_1:11941943-11941962 None:intergenic 20.0%
! AATATTGAGTTCTTTATGGT+TGG + chr1_1:11936773-11936792 None:intergenic 25.0%
! AGTTATCTAAGAGAATTAGA+AGG - chr1_1:11936950-11936969 Msa0008290:CDS 25.0%
!! GATCTTTCTAGTATTAAACT+TGG + chr1_1:11937139-11937158 None:intergenic 25.0%
!! CATACTAGTTTGTATAAAAG+TGG - chr1_1:11937526-11937545 Msa0008290:intron 25.0%
!!! CTTTTTTAACTTTTCCGTTT+CGG - chr1_1:11937711-11937730 Msa0008290:intron 25.0%
!!! ATGCTGATTTTCATAATCAT+AGG + chr1_1:11937849-11937868 None:intergenic 25.0%
! TATCTCCTAATTAAGAAACA+TGG - chr1_1:11938016-11938035 Msa0008290:intron 25.0%
! TAAGAAACATGGAAATTTGT+CGG - chr1_1:11938027-11938046 Msa0008290:intron 25.0%
! AAAACAAAACACAACTTTGA+AGG + chr1_1:11938130-11938149 None:intergenic 25.0%
! GTATTCATAATTTCATGTAG+TGG - chr1_1:11938178-11938197 Msa0008290:intron 25.0%
!!! GCATGATATTTCACTTTTTT+TGG - chr1_1:11938286-11938305 Msa0008290:intron 25.0%
!!! GTTTTTTCCTTTCACTTTTT+TGG - chr1_1:11938518-11938537 Msa0008290:intron 25.0%
! AAATAGCACTTAAATTATGG+CGG - chr1_1:11938647-11938666 Msa0008290:intron 25.0%
!! TCATAAAGATTTTCAACACA+AGG + chr1_1:11938939-11938958 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG + chr1_1:11939451-11939470 None:intergenic 25.0%
! AAAGTGACACTAAAATCTTA+AGG + chr1_1:11939916-11939935 None:intergenic 25.0%
!!! TCCAAATAAACTTATTTCTG+GGG + chr1_1:11939965-11939984 None:intergenic 25.0%
!! GTCCAAATAAACTTATTTCT+GGG + chr1_1:11939966-11939985 None:intergenic 25.0%
! ATCTTTCAAACAAGAAAGAA+AGG + chr1_1:11940054-11940073 None:intergenic 25.0%
!! AAAGATTTTCCATGATCATT+AGG - chr1_1:11940068-11940087 Msa0008290:intron 25.0%
!!! TTTCCCTATTAGTCTTAATA+TGG - chr1_1:11940235-11940254 Msa0008290:intron 25.0%
! TGAATTTACTTCAATATGTG+TGG + chr1_1:11940261-11940280 None:intergenic 25.0%
!!! CGACATAAAATGTTTTAACA+AGG - chr1_1:11940291-11940310 Msa0008290:intron 25.0%
! TAACTTACCTTTAACCAATA+GGG + chr1_1:11940841-11940860 None:intergenic 25.0%
! ATAACTTACCTTTAACCAAT+AGG + chr1_1:11940842-11940861 None:intergenic 25.0%
!! CGAAAACTTTGAAAAAAGAT+TGG - chr1_1:11941288-11941307 Msa0008290:CDS 25.0%
! ATATAGCTGAAGATATTGAA+CGG - chr1_1:11941667-11941686 Msa0008290:CDS 25.0%
! AACATTATGCACATATGTAA+TGG + chr1_1:11941810-11941829 None:intergenic 25.0%
! ATATGTGCATAATGTTATCA+AGG - chr1_1:11941814-11941833 Msa0008290:five_prime_UTR 25.0%
! TATGTGCATAATGTTATCAA+GGG - chr1_1:11941815-11941834 Msa0008290:five_prime_UTR 25.0%
! ATAATTGAATCCACGAATTA+AGG + chr1_1:11941917-11941936 None:intergenic 25.0%
!! GTTATGAATGAAGTGTTTTG+AGG + chr1_1:11936678-11936697 None:intergenic 30.0%
! TGTTTGAAATTGAAAACTGC+AGG + chr1_1:11936726-11936745 None:intergenic 30.0%
AGTGGAGTTTAAGAATGAAT+TGG + chr1_1:11936820-11936839 None:intergenic 30.0%
ACAAGAAAATAGAGAGCAAA+GGG + chr1_1:11936854-11936873 None:intergenic 30.0%
AACAAGAAAATAGAGAGCAA+AGG + chr1_1:11936855-11936874 None:intergenic 30.0%
! TTGCTCTCTATTTTCTTGTT+CGG - chr1_1:11936855-11936874 Msa0008290:three_prime_UTR 30.0%
CTTCAAGTGATAGATGTTTA+TGG - chr1_1:11937038-11937057 Msa0008290:CDS 30.0%
! GCAGCATATCTAAAACAAAA+AGG - chr1_1:11937109-11937128 Msa0008290:CDS 30.0%
CAAATTGTATAGCTTCACTA+TGG - chr1_1:11937158-11937177 Msa0008290:intron 30.0%
!! TCTATGAATTGTTGCTTTGT+TGG + chr1_1:11937277-11937296 None:intergenic 30.0%
! GCAACAATTCATAGAGTATT+TGG - chr1_1:11937282-11937301 Msa0008290:intron 30.0%
! AGGCCTAATATCGAAATTTT+TGG + chr1_1:11937317-11937336 None:intergenic 30.0%
AAAATTTCGATATTAGGCCT+TGG - chr1_1:11937317-11937336 Msa0008290:intron 30.0%
!! ATTGAAGGAGTTGATGAATT+TGG - chr1_1:11937490-11937509 Msa0008290:intron 30.0%
! ATGAATTTGGTGGTAGTATT+AGG - chr1_1:11937503-11937522 Msa0008290:intron 30.0%
!! TGTTTTGAATAAAAACAGGG+AGG + chr1_1:11937924-11937943 None:intergenic 30.0%
AAGAAACATGGAAATTTGTC+GGG - chr1_1:11938028-11938047 Msa0008290:intron 30.0%
! CTTTTGCAAAGAAACATCAT+GGG + chr1_1:11938379-11938398 None:intergenic 30.0%
! TCTTTTGCAAAGAAACATCA+TGG + chr1_1:11938380-11938399 None:intergenic 30.0%
CTCTACTTGCAATAATACAA+GGG + chr1_1:11938413-11938432 None:intergenic 30.0%
AAAAAGGTAAGAGCTTATGT+GGG + chr1_1:11938480-11938499 None:intergenic 30.0%
CTAGACTTAAAACTTAGTTG+TGG + chr1_1:11938589-11938608 None:intergenic 30.0%
!! AAAGATTTTGGGTGAAGATA+TGG - chr1_1:11938799-11938818 Msa0008290:intron 30.0%
AATAGTAGTATCAGAGCATA+TGG - chr1_1:11938890-11938909 Msa0008290:CDS 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr1_1:11939466-11939485 None:intergenic 30.0%
ATCCGTGTGAAAAATCAAAT+TGG - chr1_1:11939495-11939514 Msa0008290:intron 30.0%
TCCGTGTGAAAAATCAAATT+GGG - chr1_1:11939496-11939515 Msa0008290:intron 30.0%
!! ACCCAATTTGATTTTTCACA+CGG + chr1_1:11939500-11939519 None:intergenic 30.0%
!!! TGATGGTACTTTTTCTCTAT+TGG - chr1_1:11939594-11939613 Msa0008290:intron 30.0%
!! TTCTCTATTGGTTTGATTGA+AGG - chr1_1:11939606-11939625 Msa0008290:intron 30.0%
ACCCCAGAAATAAGTTTATT+TGG - chr1_1:11939961-11939980 Msa0008290:intron 30.0%
CGTCCAAATAAACTTATTTC+TGG + chr1_1:11939967-11939986 None:intergenic 30.0%
TGGCCATATTAAGACTAATA+GGG + chr1_1:11940241-11940260 None:intergenic 30.0%
ACAAAAGTAATGTACCCTAT+TGG - chr1_1:11940824-11940843 Msa0008290:intron 30.0%
! TAATGTACCCTATTGGTTAA+AGG - chr1_1:11940831-11940850 Msa0008290:intron 30.0%
CAAAATTCAGATAGATGGAT+AGG + chr1_1:11941451-11941470 None:intergenic 30.0%
!!! AGCTATATTTTTTGCATCCA+TGG + chr1_1:11941655-11941674 None:intergenic 30.0%
TGTTATTACGTAAATGGTGA+TGG - chr1_1:11941769-11941788 Msa0008290:five_prime_UTR 30.0%
!! TCTTTCCATTTTTATGGACA+AGG + chr1_1:11941853-11941872 None:intergenic 30.0%
!! TTTGACTTGCTATAGAGAAA+GGG - chr1_1:11942074-11942093 Msa0008290:five_prime_UTR 30.0%
AGTGACAAAAAATTGCATTG+TGG - chr1_1:11942103-11942122 Msa0008290:five_prime_UTR 30.0%
GTGACAAAAAATTGCATTGT+GGG - chr1_1:11942104-11942123 Msa0008290:five_prime_UTR 30.0%
!!! TGTGTGTGTGTTGTTTTCAA+TGG + chr1_1:11936568-11936587 None:intergenic 35.0%
CAAACCTTCTTTAGCTAAGA+GGG - chr1_1:11936634-11936653 Msa0008290:three_prime_UTR 35.0%
!!! GAATGAAGTGTTTTGAGGAT+TGG + chr1_1:11936673-11936692 None:intergenic 35.0%
GGTTGAGTTTCAAGAGAAAA+AGG + chr1_1:11936705-11936724 None:intergenic 35.0%
TTGAGTTCTTTATGGTTGGT+TGG + chr1_1:11936769-11936788 None:intergenic 35.0%
!!! CAAAGGGAAATTTTAGCTAG+TGG + chr1_1:11936838-11936857 None:intergenic 35.0%
GATAGATGTTTATGGATTCC+AGG - chr1_1:11937046-11937065 Msa0008290:CDS 35.0%
AGTTTGTGAGCTTCCTTTAA+TGG - chr1_1:11937225-11937244 Msa0008290:intron 35.0%
GATATGTTGGAAAACCACTA+GGG + chr1_1:11937255-11937274 None:intergenic 35.0%
!! TGTTGCTTTGTTGGATATGT+TGG + chr1_1:11937268-11937287 None:intergenic 35.0%
ATAACTGTCTCATTGAACCA+AGG + chr1_1:11937337-11937356 None:intergenic 35.0%
!! TTGATGCTACACTTGGTTTT+TGG - chr1_1:11937368-11937387 Msa0008290:intron 35.0%
AAAAGTGGTGAAGAGTTTAG+AGG - chr1_1:11937541-11937560 Msa0008290:intron 35.0%
AAAGTGGTGAAGAGTTTAGA+GGG - chr1_1:11937542-11937561 Msa0008290:intron 35.0%
! GTTTAGAGGGAAGAAAGTTT+TGG - chr1_1:11937555-11937574 Msa0008290:intron 35.0%
! TTCAGGTATGGAAGTTTGTT+TGG - chr1_1:11937594-11937613 Msa0008290:intron 35.0%
GAATCTCTAACCACAATAGA+AGG + chr1_1:11937643-11937662 None:intergenic 35.0%
! TAACTTTTCCGTTTCGGAAA+TGG - chr1_1:11937717-11937736 Msa0008290:intron 35.0%
TAATTTCATGTAGTGGCTAC+AGG - chr1_1:11938185-11938204 Msa0008290:intron 35.0%
AAACATCATGGGAAGGAAAA+AGG + chr1_1:11938368-11938387 None:intergenic 35.0%
GCTCTACTTGCAATAATACA+AGG + chr1_1:11938414-11938433 None:intergenic 35.0%
GTATTATTGCAAGTAGAGCA+TGG - chr1_1:11938415-11938434 Msa0008290:intron 35.0%
TTGATAGGCCTTAATTGTGT+TGG + chr1_1:11938444-11938463 None:intergenic 35.0%
AACACAATTAAGGCCTATCA+AGG - chr1_1:11938443-11938462 Msa0008290:intron 35.0%
ACACAATTAAGGCCTATCAA+GGG - chr1_1:11938444-11938463 Msa0008290:intron 35.0%
GAAAAAGGTAAGAGCTTATG+TGG + chr1_1:11938481-11938500 None:intergenic 35.0%
CCAAACACCAAAAAAGTGAA+AGG + chr1_1:11938528-11938547 None:intergenic 35.0%
!!! CCTTTCACTTTTTTGGTGTT+TGG - chr1_1:11938525-11938544 Msa0008290:intron 35.0%
GAATGAAGCTGTTATGTGAT+GGG - chr1_1:11938547-11938566 Msa0008290:intron 35.0%
!!! CTAAGTTTTAAGTCTAGTCG+TGG - chr1_1:11938592-11938611 Msa0008290:intron 35.0%
TCATGATGCGATTGTGATTA+AGG + chr1_1:11938679-11938698 None:intergenic 35.0%
TACTACTATTGAGTCATGAG+AGG + chr1_1:11938880-11938899 None:intergenic 35.0%
TAGTATCAGAGCATATGGTT+TGG - chr1_1:11938895-11938914 Msa0008290:CDS 35.0%
! GATTTTCAACACAAGGAGAA+GGG + chr1_1:11938932-11938951 None:intergenic 35.0%
! AGATTTTCAACACAAGGAGA+AGG + chr1_1:11938933-11938952 None:intergenic 35.0%
ATTGTGCAAATTCATGTGTG+TGG - chr1_1:11939179-11939198 Msa0008290:intron 35.0%
! ATGTTACTACAACTGACTCA+AGG + chr1_1:11939255-11939274 None:intergenic 35.0%
GTAAATGAGTCAGATATTCC+GGG + chr1_1:11939326-11939345 None:intergenic 35.0%
GGTAAATGAGTCAGATATTC+CGG + chr1_1:11939327-11939346 None:intergenic 35.0%
TCAAATTGGGTCAGATATTC+TGG - chr1_1:11939509-11939528 Msa0008290:intron 35.0%
CAAATTGGGTCAGATATTCT+GGG - chr1_1:11939510-11939529 Msa0008290:intron 35.0%
GCAAGAAAACAATCTCATGA+TGG - chr1_1:11939577-11939596 Msa0008290:intron 35.0%
! ATGCTGGGAAAATCAACTTT+TGG - chr1_1:11939649-11939668 Msa0008290:intron 35.0%
! TGCTGGGAAAATCAACTTTT+GGG - chr1_1:11939650-11939669 Msa0008290:intron 35.0%
TAATGCTTGGCAATACAGAA+CGG - chr1_1:11939743-11939762 Msa0008290:intron 35.0%
!!! GACAGTTTTTTGAGTTCTAG+AGG + chr1_1:11939796-11939815 None:intergenic 35.0%
CTAGAACTCAAAAAACTGTC+TGG - chr1_1:11939796-11939815 Msa0008290:intron 35.0%
! TCCTCTTTTAATCTTGGCAA+GGG + chr1_1:11939848-11939867 None:intergenic 35.0%
! GATGTCTCCTCTTTTAATCT+TGG + chr1_1:11939854-11939873 None:intergenic 35.0%
GATTAAAAGAGGAGACATCA+AGG - chr1_1:11939855-11939874 Msa0008290:intron 35.0%
!! TTGAAAGCACCTAATGATCA+TGG + chr1_1:11940080-11940099 None:intergenic 35.0%
GTGGCCATATTAAGACTAAT+AGG + chr1_1:11940242-11940261 None:intergenic 35.0%
TATTATAGGCCGTAACAATG+AGG - chr1_1:11940371-11940390 Msa0008290:intron 35.0%
ATCCTATGTCCTCATTGTTA+CGG + chr1_1:11940383-11940402 None:intergenic 35.0%
GGTATACACTTGAGTTCAAT+CGG - chr1_1:11940972-11940991 Msa0008290:intron 35.0%
AACTGAAATGGTATATGTGC+AGG - chr1_1:11941512-11941531 Msa0008290:CDS 35.0%
TTTCACCTTTCCATCCATTA+GGG + chr1_1:11941584-11941603 None:intergenic 35.0%
! TTTTCACCTTTCCATCCATT+AGG + chr1_1:11941585-11941604 None:intergenic 35.0%
AATGGATGGAAAGGTGAAAA+TGG - chr1_1:11941585-11941604 Msa0008290:CDS 35.0%
!! TATTACGTAAATGGTGATGG+AGG - chr1_1:11941772-11941791 Msa0008290:five_prime_UTR 35.0%
!! TTCCATTTTTATGGACAAGG+AGG + chr1_1:11941850-11941869 None:intergenic 35.0%
TGGTGAGAAAATGTTTCCTT+TGG - chr1_1:11941885-11941904 Msa0008290:five_prime_UTR 35.0%
TGAGAAAATGTTTCCTTTGG+TGG - chr1_1:11941888-11941907 Msa0008290:five_prime_UTR 35.0%
!!! TTTTGTGGTTATTTTGGGAG+AGG - chr1_1:11942009-11942028 Msa0008290:five_prime_UTR 35.0%
!!! TTTGTGGTTATTTTGGGAGA+GGG - chr1_1:11942010-11942029 Msa0008290:five_prime_UTR 35.0%
! AGTGCAATTTTTGCCTATGT+AGG - chr1_1:11942051-11942070 Msa0008290:five_prime_UTR 35.0%
ATAGCAAGTCAAACCTACAT+AGG + chr1_1:11942067-11942086 None:intergenic 35.0%
!! GTTTGACTTGCTATAGAGAA+AGG - chr1_1:11942073-11942092 Msa0008290:five_prime_UTR 35.0%
AATGGAGGAGGGTTACTTAA+GGG + chr1_1:11936550-11936569 None:intergenic 40.0%
!!! GTGTTGTTTTCAATGGAGGA+GGG + chr1_1:11936561-11936580 None:intergenic 40.0%
!!! TGTGTTGTTTTCAATGGAGG+AGG + chr1_1:11936562-11936581 None:intergenic 40.0%
!!! GTGTGTGTTGTTTTCAATGG+AGG + chr1_1:11936565-11936584 None:intergenic 40.0%
CCTCTTAGCTAAAGAAGGTT+TGG + chr1_1:11936636-11936655 None:intergenic 40.0%
CCAAACCTTCTTTAGCTAAG+AGG - chr1_1:11936633-11936652 Msa0008290:three_prime_UTR 40.0%
!!! TGAAGTGTTTTGAGGATTGG+TGG + chr1_1:11936670-11936689 None:intergenic 40.0%
!!! TATGGTTGGTTGGTTGGTTT+TGG + chr1_1:11936759-11936778 None:intergenic 40.0%
! GTTCTTTATGGTTGGTTGGT+TGG + chr1_1:11936765-11936784 None:intergenic 40.0%
! ATTCCAGGTCCATTGATAGT+AGG - chr1_1:11937061-11937080 Msa0008290:CDS 40.0%
!! GGAAGCTCACAAACTTGTTT+TGG + chr1_1:11937220-11937239 None:intergenic 40.0%
CCACTAGGGAATTCCATTAA+AGG + chr1_1:11937241-11937260 None:intergenic 40.0%
CCTTTAATGGAATTCCCTAG+TGG - chr1_1:11937238-11937257 Msa0008290:intron 40.0%
GGATATGTTGGAAAACCACT+AGG + chr1_1:11937256-11937275 None:intergenic 40.0%
!! ATGCTACACTTGGTTTTTGG+AGG - chr1_1:11937371-11937390 Msa0008290:intron 40.0%
!! TGCTACACTTGGTTTTTGGA+GGG - chr1_1:11937372-11937391 Msa0008290:intron 40.0%
! TGGTTACCGAGTTTGTTTGT+CGG - chr1_1:11937419-11937438 Msa0008290:intron 40.0%
TCATCAACTCCTTCAATCTC+CGG + chr1_1:11937487-11937506 None:intergenic 40.0%
!! GAAGGAGTTGATGAATTTGG+TGG - chr1_1:11937493-11937512 Msa0008290:intron 40.0%
!! TAGAGGGAAGAAAGTTTTGG+TGG - chr1_1:11937558-11937577 Msa0008290:intron 40.0%
!! AAAGTTTTGGTGGTTGGATG+TGG - chr1_1:11937568-11937587 Msa0008290:intron 40.0%
TGGATGTGGAAATTCAGGTA+TGG - chr1_1:11937582-11937601 Msa0008290:intron 40.0%
GTTGCGAGAATCGTTAGATT+TGG - chr1_1:11937760-11937779 Msa0008290:intron 40.0%
ATCATGGGAAGGAAAAAGGA+GGG + chr1_1:11938364-11938383 None:intergenic 40.0%
TGCAAAGAAACATCATGGGA+AGG + chr1_1:11938375-11938394 None:intergenic 40.0%
ATAGGCCTTAATTGTGTTGG+TGG + chr1_1:11938441-11938460 None:intergenic 40.0%
GGAATGAAGCTGTTATGTGA+TGG - chr1_1:11938546-11938565 Msa0008290:intron 40.0%
TTTAAGTCTAGTCGTGGTTG+AGG - chr1_1:11938598-11938617 Msa0008290:intron 40.0%
! AGAGCATATGGTTTGGCTAA+AGG - chr1_1:11938902-11938921 Msa0008290:CDS 40.0%
TGTTGACATTGTGTCAACAG+TGG - chr1_1:11938982-11939001 Msa0008290:CDS 40.0%
! GATTTTCCCAGCATATCTCT+TGG + chr1_1:11939643-11939662 None:intergenic 40.0%
TAACCACTTTAGCAACCACA+TGG + chr1_1:11939680-11939699 None:intergenic 40.0%
TTAACCATGACACAGTGAGA+AGG + chr1_1:11939726-11939745 None:intergenic 40.0%
ACTGTGTCATGGTTAATGCT+TGG - chr1_1:11939730-11939749 Msa0008290:intron 40.0%
AAAACTGTCTGGAAAGACAC+CGG - chr1_1:11939807-11939826 Msa0008290:intron 40.0%
! CTCCTCTTTTAATCTTGGCA+AGG + chr1_1:11939849-11939868 None:intergenic 40.0%
CAGGCATCAAGAGGTTAAAA+CGG - chr1_1:11940737-11940756 Msa0008290:intron 40.0%
!! TACAGAGTGGAATTTGCTGA+TGG - chr1_1:11940760-11940779 Msa0008290:intron 40.0%
!! GAATTTTGACGCCATCGTAT+TGG - chr1_1:11940792-11940811 Msa0008290:intron 40.0%
GCACTAACGACATGTGAAAA+AGG - chr1_1:11940951-11940970 Msa0008290:intron 40.0%
TGGATAGGCTCATAGAAGAT+AGG + chr1_1:11941436-11941455 None:intergenic 40.0%
! GGTATGTTCTCTAAGGAAGA+TGG - chr1_1:11941540-11941559 Msa0008290:CDS 40.0%
TAGTGAAACCAACAGCAAAG+AGG + chr1_1:11941611-11941630 None:intergenic 40.0%
! TTCACTAAACGTGGACTACT+TGG - chr1_1:11941624-11941643 Msa0008290:CDS 40.0%
CTGAAGATATTGAACGGTGT+TGG - chr1_1:11941673-11941692 Msa0008290:CDS 40.0%
GCATAATGTTATCAAGGGTG+TGG - chr1_1:11941820-11941839 Msa0008290:five_prime_UTR 40.0%
CTCCTCCTTGTCCATAAAAA+TGG - chr1_1:11941845-11941864 Msa0008290:five_prime_UTR 40.0%
CAATGGAGGAGGGTTACTTA+AGG + chr1_1:11936551-11936570 None:intergenic 45.0%
TTGGCCCTCTTAGCTAAAGA+AGG + chr1_1:11936641-11936660 None:intergenic 45.0%
!! TGAGGATTGGTGGCAACTTT+TGG + chr1_1:11936660-11936679 None:intergenic 45.0%
TCTTGTTCGGTATCAGACCT+TGG - chr1_1:11936868-11936887 Msa0008290:three_prime_UTR 45.0%
ATGAAGACGAAGACGATCGT+AGG + chr1_1:11937194-11937213 None:intergenic 45.0%
GCTGAGTTTGATGCTACACT+TGG - chr1_1:11937361-11937380 Msa0008290:intron 45.0%
! TTACCGAGTTTGTTTGTCGG+TGG - chr1_1:11937422-11937441 Msa0008290:intron 45.0%
CAACCACCGACAAACAAACT+CGG + chr1_1:11937428-11937447 None:intergenic 45.0%
!! GGGAAGAAAGTTTTGGTGGT+TGG - chr1_1:11937562-11937581 Msa0008290:intron 45.0%
GTGGTTGGATGTGGAAATTC+AGG - chr1_1:11937577-11937596 Msa0008290:intron 45.0%
TGATGCTGCTCCTTCTATTG+TGG - chr1_1:11937630-11937649 Msa0008290:intron 45.0%
!! CATCGGTTCCATTTCCGAAA+CGG + chr1_1:11937728-11937747 None:intergenic 45.0%
ATTCTCAAGCATGCCTAGCA+TGG - chr1_1:11938310-11938329 Msa0008290:intron 45.0%
TTCTCAAGCATGCCTAGCAT+GGG - chr1_1:11938311-11938330 Msa0008290:intron 45.0%
GTCATCTTCTATCCCATGCT+AGG + chr1_1:11938326-11938345 None:intergenic 45.0%
AGGAGGGGAAAAAAGCAACT+GGG + chr1_1:11938348-11938367 None:intergenic 45.0%
AAGGAGGGGAAAAAAGCAAC+TGG + chr1_1:11938349-11938368 None:intergenic 45.0%
TCATGGGAAGGAAAAAGGAG+GGG + chr1_1:11938363-11938382 None:intergenic 45.0%
CATCATGGGAAGGAAAAAGG+AGG + chr1_1:11938365-11938384 None:intergenic 45.0%
CATGGCCACCAACACAATTA+AGG - chr1_1:11938433-11938452 Msa0008290:intron 45.0%
AAGGTAAGAGCTTATGTGGG+AGG + chr1_1:11938477-11938496 None:intergenic 45.0%
ACTTAGTTGTGGAGATGCTG+TGG + chr1_1:11938578-11938597 None:intergenic 45.0%
! GCATATGGTTTGGCTAAAGG+TGG - chr1_1:11938905-11938924 Msa0008290:CDS 45.0%
! AACAGTGGTGCTAACGACAT+AGG - chr1_1:11938997-11939016 Msa0008290:CDS 45.0%
! GAGGGAGTATATAGTAGAGG+AGG + chr1_1:11939300-11939319 None:intergenic 45.0%
! ACGGAGGGAGTATATAGTAG+AGG + chr1_1:11939303-11939322 None:intergenic 45.0%
ATGAGTCAGATATTCCGGGA+CGG + chr1_1:11939322-11939341 None:intergenic 45.0%
! TTGGGTCAGATATTCTGGGA+CGG - chr1_1:11939514-11939533 Msa0008290:intron 45.0%
ATCCTGCCAAGAGATATGCT+GGG - chr1_1:11939634-11939653 Msa0008290:intron 45.0%
!!! CAACTTTTGGGTTGTCCATG+TGG - chr1_1:11939662-11939681 Msa0008290:intron 45.0%
TGTCCATGTGGTTGCTAAAG+TGG - chr1_1:11939674-11939693 Msa0008290:intron 45.0%
ATGTAATCCACCAGTTGCAC+GGG + chr1_1:11939703-11939722 None:intergenic 45.0%
GATGTAATCCACCAGTTGCA+CGG + chr1_1:11939704-11939723 None:intergenic 45.0%
ACATCCTTCTCACTGTGTCA+TGG - chr1_1:11939719-11939738 Msa0008290:intron 45.0%
CTTGGCAATACAGAACGGTT+CGG - chr1_1:11939748-11939767 Msa0008290:intron 45.0%
!! CAATACAGAACGGTTCGGTT+TGG - chr1_1:11939753-11939772 Msa0008290:intron 45.0%
GCCCTTGCCAAGATTAAAAG+AGG - chr1_1:11939844-11939863 Msa0008290:intron 45.0%
!! CGTTTTAACCTCTTGATGCC+TGG + chr1_1:11940739-11940758 None:intergenic 45.0%
GAGGTTAAAACGGTACAGAG+TGG - chr1_1:11940747-11940766 Msa0008290:intron 45.0%
GTAACCAGTTGCCAATACGA+TGG + chr1_1:11940806-11940825 None:intergenic 45.0%
CTAAGGAAGATGGATACCCT+AGG - chr1_1:11941550-11941569 Msa0008290:CDS 45.0%
CATTAGGGAATGGCTTCCTA+GGG + chr1_1:11941569-11941588 None:intergenic 45.0%
CCTTTCCATCCATTAGGGAA+TGG + chr1_1:11941579-11941598 None:intergenic 45.0%
! CCATTCCCTAATGGATGGAA+AGG - chr1_1:11941576-11941595 Msa0008290:CDS 45.0%
! GAAAATGGCCTCTTTGCTGT+TGG - chr1_1:11941600-11941619 Msa0008290:CDS 45.0%
!! GCTGTTGGTTTCACTAAACG+TGG - chr1_1:11941615-11941634 Msa0008290:CDS 45.0%
! TGAACGGTGTTGGAAAGTTG+AGG - chr1_1:11941683-11941702 Msa0008290:CDS 45.0%
CGAATTAAGGACACCACCAA+AGG + chr1_1:11941904-11941923 None:intergenic 45.0%
!! TTGGTGGTGTCCTTAATTCG+TGG - chr1_1:11941904-11941923 Msa0008290:five_prime_UTR 45.0%
! AATTGCATTGTGGGCTGATC+TGG - chr1_1:11942113-11942132 Msa0008290:five_prime_UTR 45.0%
GAGGAGGGTTACTTAAGGGA+AGG + chr1_1:11936546-11936565 None:intergenic 50.0%
! TTTGACGAATCGAAGCGCCA+AGG + chr1_1:11936888-11936907 None:intergenic 50.0%
GCTCCTACTATCAATGGACC+TGG + chr1_1:11937067-11937086 None:intergenic 50.0%
! GGTCCATTGATAGTAGGAGC+AGG - chr1_1:11937067-11937086 Msa0008290:CDS 50.0%
GGTCCTGCTCCTACTATCAA+TGG + chr1_1:11937073-11937092 None:intergenic 50.0%
ATAGTAGGAGCAGGACCTTC+AGG - chr1_1:11937076-11937095 Msa0008290:CDS 50.0%
!! CACTTGGTTTTTGGAGGGTG+AGG - chr1_1:11937377-11937396 Msa0008290:intron 50.0%
!! TTTTTGGAGGGTGAGGAGTG+AGG - chr1_1:11937384-11937403 Msa0008290:intron 50.0%
!! TTTTGGAGGGTGAGGAGTGA+GGG - chr1_1:11937385-11937404 Msa0008290:intron 50.0%
GCAACTGCTGCATTGTGCAT+CGG + chr1_1:11937745-11937764 None:intergenic 50.0%
! GAGCTTATGTGGGAGGCTTT+TGG + chr1_1:11938470-11938489 None:intergenic 50.0%
CGCATCATGATCGTCGTTGT+TGG - chr1_1:11938689-11938708 Msa0008290:intron 50.0%
! AGTGGTGCTAACGACATAGG+TGG - chr1_1:11939000-11939019 Msa0008290:CDS 50.0%
! GTGGTGCTAACGACATAGGT+GGG - chr1_1:11939001-11939020 Msa0008290:CDS 50.0%
! TGGTGCTAACGACATAGGTG+GGG - chr1_1:11939002-11939021 Msa0008290:CDS 50.0%
ACTATATACTCCCTCCGTCC+CGG - chr1_1:11939305-11939324 Msa0008290:intron 50.0%
!! GTCAGATATTCTGGGACGGA+GGG - chr1_1:11939518-11939537 Msa0008290:intron 50.0%
CATCCTGCCAAGAGATATGC+TGG - chr1_1:11939633-11939652 Msa0008290:intron 50.0%
TTCCCAGCATATCTCTTGGC+AGG + chr1_1:11939639-11939658 None:intergenic 50.0%
AAAGTGGTTACCCGTGCAAC+TGG - chr1_1:11939690-11939709 Msa0008290:intron 50.0%
!! CAGAACGGTTCGGTTTGGTT+CGG - chr1_1:11939758-11939777 Msa0008290:intron 50.0%
AAAGACACCGGTCCTAGATG+TGG - chr1_1:11939819-11939838 Msa0008290:intron 50.0%
AAGACACCGGTCCTAGATGT+GGG - chr1_1:11939820-11939839 Msa0008290:intron 50.0%
GGCCGTAACAATGAGGACAT+AGG - chr1_1:11940378-11940397 Msa0008290:intron 50.0%
CCATTAGGGAATGGCTTCCT+AGG + chr1_1:11941570-11941589 None:intergenic 50.0%
CCTAGGAAGCCATTCCCTAA+TGG - chr1_1:11941567-11941586 Msa0008290:CDS 50.0%
GGAAGCCATTCCCTAATGGA+TGG - chr1_1:11941571-11941590 Msa0008290:CDS 50.0%
!! TGGACTACTTGGTGCATCCA+TGG - chr1_1:11941635-11941654 Msa0008290:CDS 50.0%
GCTGCTACTGCTAGTCCTGA+AGG + chr1_1:11937094-11937113 None:intergenic 55.0%
TTTGGAGGGTGAGGAGTGAG+GGG - chr1_1:11937386-11937405 Msa0008290:intron 55.0%
CGGTGGTTGATCGTTGCAAC+CGG - chr1_1:11937439-11937458 Msa0008290:intron 55.0%
TGCAACCGGAGAGAATGCTG+AGG - chr1_1:11937453-11937472 Msa0008290:intron 55.0%
AACCGGAGAGAATGCTGAGG+CGG - chr1_1:11937456-11937475 Msa0008290:intron 55.0%
AACCGCCTCAGCATTCTCTC+CGG + chr1_1:11937461-11937480 None:intergenic 55.0%
GAATGCTGAGGCGGTTGTAC+CGG - chr1_1:11937465-11937484 Msa0008290:intron 55.0%
GCGGTTGTACCGGAGATTGA+AGG - chr1_1:11937475-11937494 Msa0008290:intron 55.0%
! GGAGGCTTTTGGCCCTTGAT+AGG + chr1_1:11938459-11938478 None:intergenic 55.0%
GGTGCTAACGACATAGGTGG+GGG - chr1_1:11939003-11939022 Msa0008290:CDS 55.0%
GTCAGATATTCCGGGACGGA+GGG + chr1_1:11939318-11939337 None:intergenic 55.0%
AGTCAGATATTCCGGGACGG+AGG + chr1_1:11939319-11939338 None:intergenic 55.0%
!! GGTCAGATATTCTGGGACGG+AGG - chr1_1:11939517-11939536 Msa0008290:intron 55.0%
!! AGTTCTAGAGGACCCAACCG+AGG + chr1_1:11939784-11939803 None:intergenic 55.0%
TCTCCATAGCTCCCTCGTTC+AGG - chr1_1:11940708-11940727 Msa0008290:intron 55.0%
GTACCTGAACGAGGGAGCTA+TGG + chr1_1:11940714-11940733 None:intergenic 55.0%
AGGTACGTCCAGGCATCAAG+AGG - chr1_1:11940728-11940747 Msa0008290:intron 55.0%
! GACGCCATCGTATTGGCAAC+TGG - chr1_1:11940799-11940818 Msa0008290:intron 55.0%
! TCGTTTTCCGCAGCTGCTGC+AGG - chr1_1:11937812-11937831 Msa0008290:intron 60.0%
! CGTTTTCCGCAGCTGCTGCA+GGG - chr1_1:11937813-11937832 Msa0008290:intron 60.0%
GTGGTTACCCGTGCAACTGG+TGG - chr1_1:11939693-11939712 Msa0008290:intron 60.0%
!! GGTTCGGTTTGGTTCGGCCT+CGG - chr1_1:11939764-11939783 Msa0008290:intron 60.0%
!! GGTTTGGTTCGGCCTCGGTT+GGG - chr1_1:11939769-11939788 Msa0008290:intron 60.0%
! AGGGCACCCACATCTAGGAC+CGG + chr1_1:11939829-11939848 None:intergenic 60.0%
!! TGGCAAGGGCACCCACATCT+AGG + chr1_1:11939834-11939853 None:intergenic 60.0%
TCCCTCGTTCAGGTACGTCC+AGG - chr1_1:11940718-11940737 Msa0008290:intron 60.0%
GCCTGGACGTACCTGAACGA+GGG + chr1_1:11940722-11940741 None:intergenic 60.0%
TGCCTGGACGTACCTGAACG+AGG + chr1_1:11940723-11940742 None:intergenic 60.0%
GAGGGTGAGGAGTGAGGGGA+AGG - chr1_1:11937390-11937409 Msa0008290:intron 65.0%
GGTGAGGAGTGAGGGGAAGG+CGG - chr1_1:11937393-11937412 Msa0008290:intron 65.0%
GTGAGGAGTGAGGGGAAGGC+GGG - chr1_1:11937394-11937413 Msa0008290:intron 65.0%
GAGTGAGGGGAAGGCGGGAA+TGG - chr1_1:11937399-11937418 Msa0008290:intron 65.0%
CTACAGCCCTGCAGCAGCTG+CGG + chr1_1:11937822-11937841 None:intergenic 65.0%
!! CGGTTTGGTTCGGCCTCGGT+TGG - chr1_1:11939768-11939787 Msa0008290:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 11936538 11942149 11936538 ID=Msa0008290;Name=Msa0008290
chr1_1 mRNA 11936538 11942149 11936538 ID=Msa0008290-mRNA-1;Parent=Msa0008290;Name=Msa0008290-mRNA-1;_AED=0.02;_eAED=0.02;_QI=406|1|1|1|1|1|4|412|431
chr1_1 exon 11936538 11937153 11936538 ID=Msa0008290-mRNA-1:exon:4506;Parent=Msa0008290-mRNA-1
chr1_1 exon 11937835 11937957 11937835 ID=Msa0008290-mRNA-1:exon:4505;Parent=Msa0008290-mRNA-1
chr1_1 exon 11938811 11939059 11938811 ID=Msa0008290-mRNA-1:exon:4504;Parent=Msa0008290-mRNA-1
chr1_1 exon 11941024 11942149 11941024 ID=Msa0008290-mRNA-1:exon:4503;Parent=Msa0008290-mRNA-1
chr1_1 five_prime_UTR 11941744 11942149 11941744 ID=Msa0008290-mRNA-1:five_prime_utr;Parent=Msa0008290-mRNA-1
chr1_1 CDS 11941024 11941743 11941024 ID=Msa0008290-mRNA-1:cds;Parent=Msa0008290-mRNA-1
chr1_1 CDS 11938811 11939059 11938811 ID=Msa0008290-mRNA-1:cds;Parent=Msa0008290-mRNA-1
chr1_1 CDS 11937835 11937957 11937835 ID=Msa0008290-mRNA-1:cds;Parent=Msa0008290-mRNA-1
chr1_1 CDS 11936950 11937153 11936950 ID=Msa0008290-mRNA-1:cds;Parent=Msa0008290-mRNA-1
chr1_1 three_prime_UTR 11936538 11936949 11936538 ID=Msa0008290-mRNA-1:three_prime_utr;Parent=Msa0008290-mRNA-1
Gene Sequence

>Msa0008290

ATGGACAGTTATCTAAGAGAATTAGAAGGAAAACAAGCACATGATCCTTTATTCATAGAAAAAATGATCAACAACAAGAACAAGAATTCAACTTCTTCAAGTGATAGATGTTTATGGATTCCAGGTCCATTGATAGTAGGAGCAGGACCTTCAGGACTAGCAGTAGCAGCATATCTAAAACAAAAAGGTGTTCCAAGTTTAATACTAGAAAGATCAAATTGTATAGCTTCACTATGGAAGCTAAAAACCTACGATCGTCTTCGTCTTCATTTACCAAAACAAGTTTGTGAGCTTCCTTTAATGGAATTCCCTAGTGGTTTTCCAACATATCCAACAAAGCAACAATTCATAGAGTATTTGGAAAGTTATTCCAAAAATTTCGATATTAGGCCTTGGTTCAATGAGACAGTTATGCATGCTGAGTTTGATGCTACACTTGGTTTTTGGAGGGTGAGGAGTGAGGGGAAGGCGGGAATGGTTACCGAGTTTGTTTGTCGGTGGTTGATCGTTGCAACCGGAGAGAATGCTGAGGCGGTTGTACCGGAGATTGAAGGAGTTGATGAATTTGGTGGTAGTATTAGGCATACTAGTTTGTATAAAAGTGGTGAAGAGTTTAGAGGGAAGAAAGTTTTGGTGGTTGGATGTGGAAATTCAGGTATGGAAGTTTGTTTGGATCTTTGTAATCATGATGCTGCTCCTTCTATTGTGGTTAGAGATTCAGTACACATCCTGCCAAGAGATATGCTGGGAAAATCAACTTTTGGGTTGTCCATGTGGTTGCTAAAGTGGTTACCCGTGCAACTGGTGGATTACATCCTTCTCACTGTGTCATGGTTAATGCTTGGCAATACAGAACGGTTCGGTTTGGTTCGGCCTCGGTTGGGTCCTCTAGAACTCAAAAAACTGTCTGGAAAGACACCGGTCCTAGATGTGGGTGCCCTTGCCAAGATTAAAAGAGGAGACATCAAGGTACGTCCAGGCATCAAGAGGTTAAAACGGTACAGAGTGGAATTTGCTGATGGAAGTACAGAGAATTTTGACGCCATCGTATTGGCAACTGGTTACAAAAGTAATGTACCCTATTGGTTAAAGGATAAGGGTATGTTCTCTAAGGAAGATGGATACCCTAGGAAGCCATTCCCTAATGGATGGAAAGGTGAAAATGGCCTCTTTGCTGTTGGTTTCACTAAACGTGGACTACTTGGTGCATCCATGGATGCAAAAAATATAGCTGAAGATATTGAACGGTGTTGGAAAGTTGAGGCAAAGCATATATTTCAACAATCAAATTCATGA
Protein sequence

>Msa0008290

MDSYLRELEGKQAHDPLFIEKMINNKNKNSTSSSDRCLWIPGPLIVGAGPSGLAVAAYLKQKGVPSLILERSNCIASLWKLKTYDRLRLHLPKQVCELPLMEFPSGFPTYPTKQQFIEYLESYSKNFDIRPWFNETVMHAEFDATLGFWRVRSEGKAGMVTEFVCRWLIVATGENAEAVVPEIEGVDEFGGSIRHTSLYKSGEEFRGKKVLVVGCGNSGMEVCLDLCNHDAAPSIVVRDSVHILPRDMLGKSTFGLSMWLLKWLPVQLVDYILLTVSWLMLGNTERFGLVRPRLGPLELKKLSGKTPVLDVGALAKIKRGDIKVRPGIKRLKRYRVEFADGSTENFDAIVLATGYKSNVPYWLKDKGMFSKEDGYPRKPFPNGWKGENGLFAVGFTKRGLLGASMDAKNIAEDIERCWKVEAKHIFQQSNS*