Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062180 | sp|O80462|XLG1_ARATH | 48.218 | 898 | 378 | 14 | 15 | 852 | 11 | 881 | 0.0 | 797 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062180 | A0A072VFF3 | 94.302 | 860 | 45 | 1 | 1 | 860 | 16 | 871 | 0.0 | 1572 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa0062180 | 0.818991 | 1.467880e-52 | -8.615850e-47 |
| Msa0013280 | Msa0062180 | 0.901389 | 2.816245e-78 | -8.615850e-47 |
| Msa0062180 | Msa0106530 | 0.900832 | 4.937146e-78 | -8.615850e-47 |
| Msa0062180 | Msa0201570 | 0.809939 | 1.476839e-50 | -8.615850e-47 |
| Msa0062180 | Msa0277410 | 0.805504 | 1.293085e-49 | -8.615850e-47 |
| Msa0062180 | Msa0364790 | 0.800812 | 1.209116e-48 | -8.615850e-47 |
| Msa0062180 | Msa0377840 | 0.830886 | 2.280492e-55 | -8.615850e-47 |
| Msa0062180 | Msa0408340 | 0.827326 | 1.663963e-54 | -8.615850e-47 |
| Msa0062180 | Msa0426560 | 0.826149 | 3.177665e-54 | -8.615850e-47 |
| Msa0062180 | Msa0473140 | 0.820815 | 5.620448e-53 | -8.615850e-47 |
| Msa0062180 | Msa0501410 | 0.801629 | 8.229184e-49 | -8.615850e-47 |
| Msa0062180 | Msa0517610 | 0.831047 | 2.082769e-55 | -8.615850e-47 |
| Msa0062180 | Msa0524330 | 0.813104 | 3.030193e-51 | -8.615850e-47 |
| Msa0062180 | Msa0524440 | 0.827172 | 1.811262e-54 | -8.615850e-47 |
| Msa0062180 | Msa0572560 | 0.808978 | 2.374413e-50 | -8.615850e-47 |
| Msa0062180 | Msa0708290 | 0.806679 | 7.317928e-50 | -8.615850e-47 |
| Msa0062180 | Msa1043120 | 0.835557 | 1.565771e-56 | -8.615850e-47 |
| Msa0062180 | Msa1367530 | 0.830660 | 2.591403e-55 | -8.615850e-47 |
| Msa0062180 | Msa1379580 | 0.814099 | 1.830683e-51 | -8.615850e-47 |
| Msa0062180 | Msa1405820 | 0.886801 | 2.492874e-72 | -8.615850e-47 |
| Msa0062180 | Msa1408180 | 0.802880 | 4.548509e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062180 | MtrunA17_Chr1g0162561 | 94.302 | 860 | 45 | 1 | 1 | 860 | 16 | 871 | 0.0 | 1572 |
| Msa0062180 | MtrunA17_Chr5g0402991 | 57.647 | 680 | 272 | 5 | 184 | 852 | 226 | 900 | 0.0 | 814 |
| Msa0062180 | MtrunA17_Chr8g0374061 | 57.434 | 686 | 279 | 6 | 167 | 842 | 85 | 767 | 0.0 | 803 |
| Msa0062180 | MtrunA17_Chr6g0479291 | 42.647 | 884 | 429 | 15 | 12 | 836 | 39 | 903 | 0.0 | 659 |
| Msa0062180 | MtrunA17_Chr5g0410081 | 49.390 | 656 | 303 | 10 | 198 | 837 | 171 | 813 | 0.0 | 619 |
| Msa0062180 | MtrunA17_Chr1g0151141 | 29.592 | 392 | 202 | 15 | 447 | 830 | 36 | 361 | 1.29e-39 | 151 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062180 | AT2G23460.1 | 48.218 | 898 | 378 | 14 | 15 | 852 | 11 | 881 | 0.0 | 797 |
| Msa0062180 | AT4G34390.1 | 47.345 | 885 | 392 | 22 | 2 | 860 | 24 | 860 | 0.0 | 710 |
| Msa0062180 | AT4G34390.2 | 45.136 | 884 | 374 | 21 | 2 | 860 | 24 | 821 | 0.0 | 663 |
| Msa0062180 | AT1G31930.5 | 50.536 | 653 | 301 | 7 | 198 | 837 | 176 | 819 | 0.0 | 632 |
| Msa0062180 | AT1G31930.2 | 50.536 | 653 | 301 | 7 | 198 | 837 | 176 | 819 | 0.0 | 632 |
| Msa0062180 | AT1G31930.3 | 50.536 | 653 | 301 | 7 | 198 | 837 | 176 | 819 | 0.0 | 632 |
| Msa0062180 | AT1G31930.6 | 50.536 | 653 | 301 | 7 | 198 | 837 | 176 | 819 | 0.0 | 632 |
| Msa0062180 | AT1G31930.1 | 50.536 | 653 | 301 | 7 | 198 | 837 | 176 | 819 | 0.0 | 632 |
| Msa0062180 | AT1G31930.4 | 50.536 | 653 | 301 | 7 | 198 | 837 | 176 | 819 | 0.0 | 632 |
| Msa0062180 | AT2G26300.2 | 27.481 | 393 | 219 | 13 | 447 | 827 | 35 | 373 | 2.24e-39 | 150 |
| Msa0062180 | AT2G26300.1 | 27.481 | 393 | 219 | 13 | 447 | 827 | 35 | 373 | 2.24e-39 | 150 |
Find 173 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTCTTCTTCTTGAAATT+TGG | 0.098655 | 1_2:+21386355 | None:intergenic |
| TTAATGCAAAATTAAATATT+TGG | 0.104166 | 1_2:+21385815 | None:intergenic |
| ATGACAAAGCTTCTGGATTT+TGG | 0.105208 | 1_2:-21388953 | Msa0062180:CDS |
| ACGATTCTTTATACATTAAT+TGG | 0.138836 | 1_2:+21385951 | None:intergenic |
| ACATGATGAGATTCTAAATT+TGG | 0.156467 | 1_2:+21389674 | None:intergenic |
| ATCTTGAAAGTAGGAATTTC+TGG | 0.179069 | 1_2:+21389833 | None:intergenic |
| CTATTTGTTTCTTTGGTTAC+TGG | 0.199983 | 1_2:-21386118 | Msa0062180:CDS |
| TGTAATCTCGCGGTCATTTA+TGG | 0.209758 | 1_2:+21388741 | None:intergenic |
| CCAGCTGCTATGCGCGAATA+TGG | 0.211059 | 1_2:-21387512 | Msa0062180:CDS |
| TCTTGTTACAAGTGTCTTAA+AGG | 0.214089 | 1_2:-21389329 | Msa0062180:CDS |
| TAATGCAAAATTAAATATTT+GGG | 0.217522 | 1_2:+21385816 | None:intergenic |
| CTAATTGCATGTGGCTTTAA+TGG | 0.231178 | 1_2:+21389368 | None:intergenic |
| TGTACCATGTAATTCGATTC+AGG | 0.234770 | 1_2:+21389428 | None:intergenic |
| AAGAACTCTATTTGTTTCTT+TGG | 0.238160 | 1_2:-21386125 | Msa0062180:CDS |
| TTCCTCAAGAAGATCGAATT+TGG | 0.241366 | 1_2:+21386318 | None:intergenic |
| AACCAGTCACACCTTGTTAA+TGG | 0.243332 | 1_2:+21386280 | None:intergenic |
| TATTGGTATGACAAAGCTTC+TGG | 0.267593 | 1_2:-21388960 | Msa0062180:CDS |
| GTGAAGGAACTCCTAACTTT+TGG | 0.268980 | 1_2:-21388583 | Msa0062180:CDS |
| GATCCTGGCTTAAGCTCTTT+AGG | 0.275080 | 1_2:+21388984 | None:intergenic |
| GAAGAATCATGTTGATATTC+AGG | 0.278566 | 1_2:+21387000 | None:intergenic |
| GTGGAGAGATGAGGCGATTC+AGG | 0.278751 | 1_2:-21387471 | Msa0062180:CDS |
| CCAACACATTTCCTTCCTTC+TGG | 0.281405 | 1_2:+21389221 | None:intergenic |
| TAACAAGACCCTTTCTTTCC+TGG | 0.282549 | 1_2:+21389344 | None:intergenic |
| CGTTCCTTTGCCCTTCTTCC+CGG | 0.284533 | 1_2:+21388540 | None:intergenic |
| CTTGTTGGTTGTGTAAATTC+TGG | 0.288160 | 1_2:-21388094 | Msa0062180:CDS |
| TTACCAAGTGGTTGAATAAC+AGG | 0.298970 | 1_2:+21389755 | None:intergenic |
| TCAGGTTCAGGTTCGCGTTC+GGG | 0.306891 | 1_2:-21389554 | Msa0062180:CDS |
| AGCTTAAGCCAGGATCTTAT+TGG | 0.308196 | 1_2:-21388977 | Msa0062180:CDS |
| ATCAGGTTCAGGTTCGCGTT+CGG | 0.316465 | 1_2:-21389555 | Msa0062180:CDS |
| AGCGACCGCCAACGTTCAAC+TGG | 0.323370 | 1_2:+21388800 | None:intergenic |
| AGAGCTTCATCGATCGTATC+AGG | 0.331731 | 1_2:+21386088 | None:intergenic |
| GACTGAAGAGTTTCTCAGAT+TGG | 0.349631 | 1_2:-21387577 | Msa0062180:CDS |
| CAGTCTTGGACCAATTGAAT+AGG | 0.351169 | 1_2:+21387595 | None:intergenic |
| GGAATCTTGGAAAATGTTCT+AGG | 0.358970 | 1_2:-21389163 | Msa0062180:CDS |
| AGAAACAAATAGAGTTCTTT+CGG | 0.367235 | 1_2:+21386129 | None:intergenic |
| GAGAATAAGAGAAGGAATCT+TGG | 0.369931 | 1_2:-21389176 | Msa0062180:CDS |
| GGTTCCACCTATTAAAACTA+TGG | 0.371001 | 1_2:+21385838 | None:intergenic |
| AGATTATGAACCATCTGATA+TGG | 0.373775 | 1_2:-21387115 | Msa0062180:CDS |
| AGTACATTATAGACAGTAAA+GGG | 0.376284 | 1_2:-21386435 | Msa0062180:CDS |
| AAGAGTATTTACTAGAGAAT+AGG | 0.381469 | 1_2:-21387835 | Msa0062180:CDS |
| TTGTGATTGTTACTTATAAC+CGG | 0.382473 | 1_2:+21386244 | None:intergenic |
| GACTTATCATTAACAATAGA+AGG | 0.384451 | 1_2:+21386025 | None:intergenic |
| ATCAAAATACTCGTCACTTT+CGG | 0.389342 | 1_2:+21389403 | None:intergenic |
| TGTGTTGGTTGCATTGGTTA+TGG | 0.389856 | 1_2:-21389206 | Msa0062180:CDS |
| ACTTGTGCAGCAGGGAATTC+CGG | 0.393083 | 1_2:-21387638 | Msa0062180:intron |
| ATCGATGAAGCTCTTCGATA+TGG | 0.397848 | 1_2:-21386079 | Msa0062180:CDS |
| ACTTAATAGAGAAGAGCTTA+TGG | 0.402628 | 1_2:-21389030 | Msa0062180:CDS |
| TTTGAAGTGTCTTCTGATGA+AGG | 0.403595 | 1_2:+21388125 | None:intergenic |
| AAAAGAGCTGTTCATACTAA+AGG | 0.405297 | 1_2:-21388716 | Msa0062180:intron |
| TCAGGATTCACCCAAAAGTT+AGG | 0.406978 | 1_2:+21388572 | None:intergenic |
| GATACAACACCCTATTCAAT+TGG | 0.408891 | 1_2:-21387605 | Msa0062180:CDS |
| ATAAGCTCTTCTCTATTAAG+TGG | 0.408964 | 1_2:+21389032 | None:intergenic |
| AGATGGTTCATAATCTATCT+TGG | 0.413177 | 1_2:+21387122 | None:intergenic |
| AGCATGTACTATATTTAAAC+AGG | 0.414927 | 1_2:-21388071 | Msa0062180:intron |
| AGAAAATAGTTAGCACTTCT+CGG | 0.421346 | 1_2:+21387413 | None:intergenic |
| TCTTGAAAGTAGGAATTTCT+GGG | 0.421769 | 1_2:+21389834 | None:intergenic |
| CGATTCAGGCGACGTACAAC+AGG | 0.423531 | 1_2:-21387457 | Msa0062180:CDS |
| CTTGTTACAAGTGTCTTAAA+GGG | 0.425963 | 1_2:-21389328 | Msa0062180:CDS |
| GTATACCAAGGTAGGTAAAC+AGG | 0.427336 | 1_2:+21387885 | None:intergenic |
| AGTCTTGGACCAATTGAATA+GGG | 0.432909 | 1_2:+21387596 | None:intergenic |
| GGAACGATAAAGGATGCATA+TGG | 0.435003 | 1_2:-21388523 | Msa0062180:CDS |
| GTACTCATCGTAGTCGGTTA+AGG | 0.438650 | 1_2:+21386453 | None:intergenic |
| GATACAATAGAATCAGGTTC+AGG | 0.442787 | 1_2:-21389566 | Msa0062180:CDS |
| TCTGATGAGTCCTCGTCATC+TGG | 0.443162 | 1_2:-21387800 | Msa0062180:intron |
| GAAGGGCAAAGGAACGATAA+AGG | 0.444858 | 1_2:-21388533 | Msa0062180:CDS |
| AATTCACATTTCACATATAG+AGG | 0.445261 | 1_2:-21385895 | Msa0062180:three_prime_UTR |
| CAGCTGCTATGCGCGAATAT+GGG | 0.447175 | 1_2:-21387511 | Msa0062180:CDS |
| GCAATTAGACCAGGAAAGAA+AGG | 0.447720 | 1_2:-21389353 | Msa0062180:CDS |
| GGCCAATGGTGGAGGATTTG+TGG | 0.449390 | 1_2:-21387490 | Msa0062180:CDS |
| AACTGTGTGATAAGAGCAAT+GGG | 0.459073 | 1_2:-21389251 | Msa0062180:CDS |
| CCATATTCGCGCATAGCAGC+TGG | 0.459253 | 1_2:+21387512 | None:intergenic |
| AACTCTGATACAATAGAATC+AGG | 0.462946 | 1_2:-21389572 | Msa0062180:CDS |
| GAATGGTTTAACTGAGAAAG+AGG | 0.463198 | 1_2:-21389306 | Msa0062180:CDS |
| TTCCATTAACAAGGTGTGAC+TGG | 0.468855 | 1_2:-21386282 | Msa0062180:CDS |
| TACCTACCTTGGTATACTGC+TGG | 0.469509 | 1_2:-21387879 | Msa0062180:CDS |
| CTTTCTTCAGGCTCAAACAA+AGG | 0.470122 | 1_2:-21388230 | Msa0062180:intron |
| GTACCATGTAATTCGATTCA+GGG | 0.473393 | 1_2:+21389429 | None:intergenic |
| TGAAGTACTTGCATCTCCAT+TGG | 0.478445 | 1_2:+21385985 | None:intergenic |
| AGTGTCTTCTGATGAAGGCT+TGG | 0.478728 | 1_2:+21388130 | None:intergenic |
| TCTATTGTATCAGAGTTTGT+TGG | 0.480161 | 1_2:+21389578 | None:intergenic |
| GAAGAAGCTATGGATGCAAC+AGG | 0.481318 | 1_2:+21389800 | None:intergenic |
| GATGGATTGTACCGGGAAGA+AGG | 0.482095 | 1_2:-21388551 | Msa0062180:CDS |
| AGCAACCTGTTTACCTACCT+TGG | 0.486761 | 1_2:-21387890 | Msa0062180:CDS |
| TACAAGTGTCTTAAAGGGAA+TGG | 0.488301 | 1_2:-21389323 | Msa0062180:CDS |
| TCTGAGAAACTCTTCAGTCT+TGG | 0.490044 | 1_2:+21387581 | None:intergenic |
| TCTTCCCGGTACAATCCATC+AGG | 0.492229 | 1_2:+21388554 | None:intergenic |
| CCACCTAAAGAGCTTAAGCC+AGG | 0.497315 | 1_2:-21388987 | Msa0062180:CDS |
| TGGTAGAGAGGTTATTGAAT+GGG | 0.498729 | 1_2:-21386059 | Msa0062180:CDS |
| ATCAACATGATTCTTCTCTC+AGG | 0.498919 | 1_2:-21386993 | Msa0062180:intron |
| TATTGTTGATCAAGTTATGA+AGG | 0.500834 | 1_2:-21389114 | Msa0062180:CDS |
| ATCAAGTTATGAAGGATGAA+AGG | 0.501841 | 1_2:-21389106 | Msa0062180:CDS |
| TTGTCATACCAATAAGATCC+TGG | 0.503150 | 1_2:+21388969 | None:intergenic |
| AGGAAATGTGTTGGTTGCAT+TGG | 0.505797 | 1_2:-21389212 | Msa0062180:CDS |
| ATCCAACAGCCTCACATCAA+TGG | 0.506050 | 1_2:-21387064 | Msa0062180:CDS |
| CGAATATGGGCCAATGGTGG+AGG | 0.511353 | 1_2:-21387498 | Msa0062180:CDS |
| ATGAGAAAGAGAAGAAGCTA+TGG | 0.511449 | 1_2:+21389790 | None:intergenic |
| CTCCACAAATCCTCCACCAT+TGG | 0.517066 | 1_2:+21387488 | None:intergenic |
| GAACGATAAAGGATGCATAT+GGG | 0.517582 | 1_2:-21388522 | Msa0062180:CDS |
| GTGTGCTCTTCTGTCACTGC+CGG | 0.520414 | 1_2:-21388203 | Msa0062180:CDS |
| AAAGCACTTTGAGCTAATGA+AGG | 0.521537 | 1_2:+21386196 | None:intergenic |
| ACTTGATCAATCTTGAAAGT+AGG | 0.522431 | 1_2:+21389824 | None:intergenic |
| TTGGATGTACTCTAATGAGT+TGG | 0.523296 | 1_2:+21386545 | None:intergenic |
| CACCAAATTCGATCTTCTTG+AGG | 0.526416 | 1_2:-21386320 | Msa0062180:CDS |
| GACTCCTCTCTGCTTGACTT+AGG | 0.527015 | 1_2:+21387030 | None:intergenic |
| ATGGTAGAGAGGTTATTGAA+TGG | 0.529478 | 1_2:-21386060 | Msa0062180:CDS |
| TACCTTGGTATACTGCTGGA+GGG | 0.538217 | 1_2:-21387875 | Msa0062180:CDS |
| TTCCATTGATGTGAGGCTGT+TGG | 0.543616 | 1_2:+21387062 | None:intergenic |
| GAGTACATTATAGACAGTAA+AGG | 0.548914 | 1_2:-21386436 | Msa0062180:CDS |
| CGACCCTGAATCGAATTACA+TGG | 0.550701 | 1_2:-21389432 | Msa0062180:CDS |
| TGGAGAAAACTGCAAGTGGT+TGG | 0.551701 | 1_2:-21386515 | Msa0062180:CDS |
| TTTCCTGGTCTAATTGCATG+TGG | 0.553272 | 1_2:+21389359 | None:intergenic |
| TGAGCTTCAAAATATCAAGT+TGG | 0.558146 | 1_2:-21387921 | Msa0062180:CDS |
| CTACCTTGGTATACTGCTGG+AGG | 0.561329 | 1_2:-21387876 | Msa0062180:CDS |
| GCGACCGCCAACGTTCAACT+GGG | 0.564176 | 1_2:+21388801 | None:intergenic |
| CAATTAGACCAGGAAAGAAA+GGG | 0.566155 | 1_2:-21389352 | Msa0062180:CDS |
| GAGATTACTTCAACAACCAA+TGG | 0.567210 | 1_2:-21386001 | Msa0062180:CDS |
| TATAATATGTCCATATCAGA+TGG | 0.568576 | 1_2:+21387105 | None:intergenic |
| AAACTGTGTGATAAGAGCAA+TGG | 0.568819 | 1_2:-21389252 | Msa0062180:CDS |
| GTACCTGTTATTCAACCACT+TGG | 0.572932 | 1_2:-21389758 | Msa0062180:CDS |
| GAGGTGAATTAGCTCAATGA+GGG | 0.575379 | 1_2:-21385876 | Msa0062180:three_prime_UTR |
| ATGGATTGTACCGGGAAGAA+GGG | 0.575465 | 1_2:-21388550 | Msa0062180:CDS |
| AATGCAAAATTAAATATTTG+GGG | 0.578045 | 1_2:+21385817 | None:intergenic |
| ATCGTAGTCGGTTAAGGAGA+CGG | 0.579802 | 1_2:+21386459 | None:intergenic |
| TCGCGGAATGTTACCGCAGA+CGG | 0.585486 | 1_2:+21389452 | None:intergenic |
| GACCGCCAACGTTCAACTGG+GGG | 0.587168 | 1_2:+21388803 | None:intergenic |
| GGTTGCTACAAACAAAATGT+TGG | 0.587657 | 1_2:-21386413 | Msa0062180:CDS |
| TCTGGGATTGAATGATCAAG+AGG | 0.587882 | 1_2:+21389851 | None:intergenic |
| AACGATAAAGGATGCATATG+GGG | 0.594303 | 1_2:-21388521 | Msa0062180:CDS |
| CCTGGCTTAAGCTCTTTAGG+TGG | 0.598011 | 1_2:+21388987 | None:intergenic |
| TATGGACATATTATATGCTG+AGG | 0.599670 | 1_2:-21387097 | Msa0062180:CDS |
| AGGAGCATTATACAACAGCT+TGG | 0.600716 | 1_2:+21387955 | None:intergenic |
| TGAATCCTGATGGATTGTAC+CGG | 0.604818 | 1_2:-21388559 | Msa0062180:CDS |
| TTGCAGAGAAACGCAAGCAA+TGG | 0.605462 | 1_2:-21388778 | Msa0062180:CDS |
| TATACTGCTGGAGGGGCGCG+AGG | 0.606831 | 1_2:-21387867 | Msa0062180:CDS |
| TTAACTTGAACAAGATGAGG+TGG | 0.608566 | 1_2:+21389062 | None:intergenic |
| TAAAGGATGCATATGGGGCA+AGG | 0.608874 | 1_2:-21388516 | Msa0062180:intron |
| ATGGCAAGAGTGCCATGTGA+AGG | 0.609127 | 1_2:-21388599 | Msa0062180:CDS |
| AAGCCACATGCAATTAGACC+AGG | 0.609283 | 1_2:-21389362 | Msa0062180:CDS |
| CTCCAGCAGTATACCAAGGT+AGG | 0.613672 | 1_2:+21387877 | None:intergenic |
| TGGGATCTATGCCAGAAGGA+AGG | 0.614167 | 1_2:-21389232 | Msa0062180:CDS |
| GAATCCTGATGGATTGTACC+GGG | 0.614653 | 1_2:-21388558 | Msa0062180:CDS |
| AAGTTAACTTGAACAAGATG+AGG | 0.615484 | 1_2:+21389059 | None:intergenic |
| TCCTTGGAGAAAACTGCAAG+TGG | 0.617052 | 1_2:-21386519 | Msa0062180:CDS |
| ATGGACATATTATATGCTGA+GGG | 0.622333 | 1_2:-21387096 | Msa0062180:CDS |
| GCGCGAATATGGGCCAATGG+TGG | 0.623909 | 1_2:-21387501 | Msa0062180:CDS |
| ATAAACAGTAGAATCTGAAG+TGG | 0.625172 | 1_2:+21389697 | None:intergenic |
| TGTAATTCGATTCAGGGTCG+CGG | 0.626751 | 1_2:+21389435 | None:intergenic |
| AAGTTAGGAGTTCCTTCACA+TGG | 0.628090 | 1_2:+21388587 | None:intergenic |
| TATTGAACATATCTCACAAG+AGG | 0.628942 | 1_2:+21389520 | None:intergenic |
| TCGAACATGTTCCATTAACA+AGG | 0.629726 | 1_2:-21386291 | Msa0062180:CDS |
| AGAGGTGAATTAGCTCAATG+AGG | 0.630007 | 1_2:-21385877 | Msa0062180:three_prime_UTR |
| ACCTTGGTATACTGCTGGAG+GGG | 0.631322 | 1_2:-21387874 | Msa0062180:CDS |
| TATAATGTACTCATCGTAGT+CGG | 0.631790 | 1_2:+21386447 | None:intergenic |
| GGAGGATTTGTGGAGAGATG+AGG | 0.636236 | 1_2:-21387480 | Msa0062180:CDS |
| ATGAAAATTCCATTGATGTG+AGG | 0.646392 | 1_2:+21387055 | None:intergenic |
| GATGACGAGGACTCATCAGA+AGG | 0.651956 | 1_2:+21387803 | None:intergenic |
| GCAATGGGATCTATGCCAGA+AGG | 0.652030 | 1_2:-21389236 | Msa0062180:CDS |
| GAATTGATGAGAATAAGAGA+AGG | 0.652584 | 1_2:-21389184 | Msa0062180:CDS |
| TATGCGCGAATATGGGCCAA+TGG | 0.657600 | 1_2:-21387504 | Msa0062180:CDS |
| ATTGAACATATCTCACAAGA+GGG | 0.658457 | 1_2:+21389521 | None:intergenic |
| CGACCGCCAACGTTCAACTG+GGG | 0.660405 | 1_2:+21388802 | None:intergenic |
| GGGATTGAATGATCAAGAGG+AGG | 0.660953 | 1_2:+21389854 | None:intergenic |
| ATTTCCTAAGTCAAGCAGAG+AGG | 0.661953 | 1_2:-21387034 | Msa0062180:CDS |
| GGGCTGATAATTTCACAAGG+TGG | 0.676747 | 1_2:+21388823 | None:intergenic |
| TGTACCGGGAAGAAGGGCAA+AGG | 0.677096 | 1_2:-21388544 | Msa0062180:CDS |
| CCAGAAGGAAGGAAATGTGT+TGG | 0.680127 | 1_2:-21389221 | Msa0062180:CDS |
| GACGGAGAACAAAATAACAT+CGG | 0.680660 | 1_2:+21386477 | None:intergenic |
| AGCTCTTCGATATGGTAGAG+AGG | 0.683781 | 1_2:-21386071 | Msa0062180:CDS |
| ACATGTTAAGAATCCGTCTG+CGG | 0.688376 | 1_2:-21389465 | Msa0062180:CDS |
| TTGTGATGAACTTTACCAAG+TGG | 0.709458 | 1_2:+21389743 | None:intergenic |
| GTACATTATAGACAGTAAAG+GGG | 0.714081 | 1_2:-21386434 | Msa0062180:CDS |
| GCCCCTCCAGCAGTATACCA+AGG | 0.716032 | 1_2:+21387873 | None:intergenic |
| TGGACATATTATATGCTGAG+GGG | 0.726727 | 1_2:-21387095 | Msa0062180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGCAAAATTAAATATTT+GGG | + | chr1_2:21389786-21389805 | None:intergenic | 10.0% |
| !! | TTAATGCAAAATTAAATATT+TGG | + | chr1_2:21389787-21389806 | None:intergenic | 10.0% |
| !! | TAAGTAGAATGAAAAATAAA+AGG | + | chr1_2:21386928-21386947 | None:intergenic | 15.0% |
| !! | AATGCAAAATTAAATATTTG+GGG | + | chr1_2:21389785-21389804 | None:intergenic | 15.0% |
| !!! | ACTGAAATTTTATTTCTACT+TGG | + | chr1_2:21388674-21388693 | None:intergenic | 20.0% |
| !!! | TTGCTAATAATGGAATAATT+TGG | - | chr1_2:21388738-21388757 | Msa0062180:CDS | 20.0% |
| !!! | TTTATCTATTGTTTTAGAGT+CGG | - | chr1_2:21388974-21388993 | Msa0062180:CDS | 20.0% |
| !! | AATTTCTTCTTCTTGAAATT+TGG | + | chr1_2:21389247-21389266 | None:intergenic | 20.0% |
| !! | ACGATTCTTTATACATTAAT+TGG | + | chr1_2:21389651-21389670 | None:intergenic | 20.0% |
| !!! | ATTTTGACCATAGTTTTAAT+AGG | - | chr1_2:21389754-21389773 | Msa0062180:CDS | 20.0% |
| ! | ACATGATGAGATTCTAAATT+TGG | + | chr1_2:21385928-21385947 | None:intergenic | 25.0% |
| ! | TATTGTTGATCAAGTTATGA+AGG | - | chr1_2:21386485-21386504 | Msa0062180:CDS | 25.0% |
| ! | GTTGTAATACTTGATTATAC+AGG | - | chr1_2:21386745-21386764 | Msa0062180:intron | 25.0% |
| ! | TAATACTTGATTATACAGGA+AGG | - | chr1_2:21386749-21386768 | Msa0062180:intron | 25.0% |
| !!! | CAATGTTACATTAGCTTTAT+TGG | + | chr1_2:21386969-21386988 | None:intergenic | 25.0% |
| ! | CAACTTGTATTCAAATACTA+CGG | + | chr1_2:21387183-21387202 | None:intergenic | 25.0% |
| ! | TCTAAGCTTGATTTATACAA+AGG | - | chr1_2:21387215-21387234 | Msa0062180:intron | 25.0% |
| !! | TATCTGTTTTCTTTTGAACT+GGG | - | chr1_2:21387326-21387345 | Msa0062180:intron | 25.0% |
| ! | TCTAACAAATTTCTTTCTTC+AGG | - | chr1_2:21387357-21387376 | Msa0062180:intron | 25.0% |
| !! | TTAAGAGTCATAGATTTTGA+AGG | + | chr1_2:21387424-21387443 | None:intergenic | 25.0% |
| ! | CTTCAAAAATTTCTACTTGT+TGG | - | chr1_2:21387490-21387509 | Msa0062180:CDS | 25.0% |
| ! | AGCATGTACTATATTTAAAC+AGG | - | chr1_2:21387528-21387547 | Msa0062180:CDS | 25.0% |
| ! | TGTACTATATTTAAACAGGT+TGG | - | chr1_2:21387532-21387551 | Msa0062180:CDS | 25.0% |
| !!! | TATATTTAAACAGGTTGGTT+TGG | - | chr1_2:21387537-21387556 | Msa0062180:CDS | 25.0% |
| ! | TCTTTAATAACCCAAAATGA+AGG | + | chr1_2:21387605-21387624 | None:intergenic | 25.0% |
| !! | AAGATTGAATCTTTTGTCTT+AGG | - | chr1_2:21387621-21387640 | Msa0062180:CDS | 25.0% |
| !!! | AAGAGTATTTACTAGAGAAT+AGG | - | chr1_2:21387764-21387783 | Msa0062180:intron | 25.0% |
| ! | TCTATCAGCTAAATCAATAA+GGG | + | chr1_2:21387892-21387911 | None:intergenic | 25.0% |
| ! | TTCTATCAGCTAAATCAATA+AGG | + | chr1_2:21387893-21387912 | None:intergenic | 25.0% |
| !! | TTACTTAAATGCATTTTGTC+AGG | - | chr1_2:21388045-21388064 | Msa0062180:intron | 25.0% |
| ! | CTAAATATCTATGTGAATGT+AGG | - | chr1_2:21388442-21388461 | Msa0062180:intron | 25.0% |
| ! | TATAATATGTCCATATCAGA+TGG | + | chr1_2:21388497-21388516 | None:intergenic | 25.0% |
| ! | CTTTCACTTTGAACAAAAAT+AGG | + | chr1_2:21388717-21388736 | None:intergenic | 25.0% |
| !!! | AAGTGAAAGTTTGCTAATAA+TGG | - | chr1_2:21388728-21388747 | Msa0062180:CDS | 25.0% |
| ! | AAACGATTAATCATGAAGTA+CGG | + | chr1_2:21388934-21388953 | None:intergenic | 25.0% |
| !!! | TTATCTATTGTTTTAGAGTC+GGG | - | chr1_2:21388975-21388994 | Msa0062180:CDS | 25.0% |
| ! | AGTACATTATAGACAGTAAA+GGG | - | chr1_2:21389164-21389183 | Msa0062180:CDS | 25.0% |
| !! | TTGTGATTGTTACTTATAAC+CGG | + | chr1_2:21389358-21389377 | None:intergenic | 25.0% |
| ! | AGTAACAATCACAAAAAATG+TGG | - | chr1_2:21389364-21389383 | Msa0062180:CDS | 25.0% |
| ! | AGAAACAAATAGAGTTCTTT+CGG | + | chr1_2:21389473-21389492 | None:intergenic | 25.0% |
| !! | AAGAACTCTATTTGTTTCTT+TGG | - | chr1_2:21389474-21389493 | Msa0062180:CDS | 25.0% |
| ! | GACTTATCATTAACAATAGA+AGG | + | chr1_2:21389577-21389596 | None:intergenic | 25.0% |
| ! | AATTCACATTTCACATATAG+AGG | - | chr1_2:21389704-21389723 | Msa0062180:CDS | 25.0% |
| !!! | TCTTTTGCTGTTGTATACAA+TGG | - | chr1_2:21385721-21385740 | Msa0062180:three_prime_UTR | 30.0% |
| TCTTGAAAGTAGGAATTTCT+GGG | + | chr1_2:21385768-21385787 | None:intergenic | 30.0% | |
| ATCTTGAAAGTAGGAATTTC+TGG | + | chr1_2:21385769-21385788 | None:intergenic | 30.0% | |
| ACTTGATCAATCTTGAAAGT+AGG | + | chr1_2:21385778-21385797 | None:intergenic | 30.0% | |
| ATAAACAGTAGAATCTGAAG+TGG | + | chr1_2:21385905-21385924 | None:intergenic | 30.0% | |
| TCTATTGTATCAGAGTTTGT+TGG | + | chr1_2:21386024-21386043 | None:intergenic | 30.0% | |
| AACTCTGATACAATAGAATC+AGG | - | chr1_2:21386027-21386046 | Msa0062180:CDS | 30.0% | |
| ATTGAACATATCTCACAAGA+GGG | + | chr1_2:21386081-21386100 | None:intergenic | 30.0% | |
| TATTGAACATATCTCACAAG+AGG | + | chr1_2:21386082-21386101 | None:intergenic | 30.0% | |
| ! | ATCAAAATACTCGTCACTTT+CGG | + | chr1_2:21386199-21386218 | None:intergenic | 30.0% |
| TCTTGTTACAAGTGTCTTAA+AGG | - | chr1_2:21386270-21386289 | Msa0062180:CDS | 30.0% | |
| CTTGTTACAAGTGTCTTAAA+GGG | - | chr1_2:21386271-21386290 | Msa0062180:CDS | 30.0% | |
| GAATTGATGAGAATAAGAGA+AGG | - | chr1_2:21386415-21386434 | Msa0062180:CDS | 30.0% | |
| ATCAAGTTATGAAGGATGAA+AGG | - | chr1_2:21386493-21386512 | Msa0062180:CDS | 30.0% | |
| ! | AAGTTAACTTGAACAAGATG+AGG | + | chr1_2:21386543-21386562 | None:intergenic | 30.0% |
| ATAAGCTCTTCTCTATTAAG+TGG | + | chr1_2:21386570-21386589 | None:intergenic | 30.0% | |
| ACTTAATAGAGAAGAGCTTA+TGG | - | chr1_2:21386569-21386588 | Msa0062180:intron | 30.0% | |
| TTAAGCTCTTATTCAACTAG+AGG | + | chr1_2:21386703-21386722 | None:intergenic | 30.0% | |
| TCAAGTATTACAACAGCATT+AGG | + | chr1_2:21386739-21386758 | None:intergenic | 30.0% | |
| AAAAGAGCTGTTCATACTAA+AGG | - | chr1_2:21386883-21386902 | Msa0062180:intron | 30.0% | |
| !!! | ATGCATGTTTGCTTTTTGTT+TGG | - | chr1_2:21387121-21387140 | Msa0062180:CDS | 30.0% |
| ! | GTATCTGTTTTCTTTTGAAC+TGG | - | chr1_2:21387325-21387344 | Msa0062180:intron | 30.0% |
| ! | ATCTGTTTTCTTTTGAACTG+GGG | - | chr1_2:21387327-21387346 | Msa0062180:intron | 30.0% |
| ! | AATGAAGGAGCATATATGAA+TGG | + | chr1_2:21387590-21387609 | None:intergenic | 30.0% |
| ! | TCATATATGCTCCTTCATTT+TGG | - | chr1_2:21387591-21387610 | Msa0062180:CDS | 30.0% |
| ! | CATATATGCTCCTTCATTTT+GGG | - | chr1_2:21387592-21387611 | Msa0062180:CDS | 30.0% |
| TGAGCTTCAAAATATCAAGT+TGG | - | chr1_2:21387678-21387697 | Msa0062180:intron | 30.0% | |
| !!! | CTGTCTTATTTGAACTTTTC+TGG | + | chr1_2:21387865-21387884 | None:intergenic | 30.0% |
| ! | TGTTGTATCAACATTTTCAC+CGG | + | chr1_2:21387983-21388002 | None:intergenic | 30.0% |
| AGAAAATAGTTAGCACTTCT+CGG | + | chr1_2:21388189-21388208 | None:intergenic | 30.0% | |
| ! | TGCTAACTATTTTCTAGACA+GGG | - | chr1_2:21388194-21388213 | Msa0062180:CDS | 30.0% |
| TTGATATTCTTGAGCCAAAA+GGG | + | chr1_2:21388250-21388269 | None:intergenic | 30.0% | |
| TTTGATATTCTTGAGCCAAA+AGG | + | chr1_2:21388251-21388270 | None:intergenic | 30.0% | |
| GTATTATTCTGTCATGAATG+TGG | - | chr1_2:21388391-21388410 | Msa0062180:intron | 30.0% | |
| AGATGGTTCATAATCTATCT+TGG | + | chr1_2:21388480-21388499 | None:intergenic | 30.0% | |
| AGATTATGAACCATCTGATA+TGG | - | chr1_2:21388484-21388503 | Msa0062180:intron | 30.0% | |
| TATGGACATATTATATGCTG+AGG | - | chr1_2:21388502-21388521 | Msa0062180:intron | 30.0% | |
| ATGGACATATTATATGCTGA+GGG | - | chr1_2:21388503-21388522 | Msa0062180:intron | 30.0% | |
| ATGAAAATTCCATTGATGTG+AGG | + | chr1_2:21388547-21388566 | None:intergenic | 30.0% | |
| GAAGAATCATGTTGATATTC+AGG | + | chr1_2:21388602-21388621 | None:intergenic | 30.0% | |
| CTAGTATCATCGAAAGTTTA+AGG | - | chr1_2:21388794-21388813 | Msa0062180:CDS | 30.0% | |
| TTATAGTAGCATAGTGCATA+GGG | + | chr1_2:21388894-21388913 | None:intergenic | 30.0% | |
| !! | TAATGAGTTGGTATCTGTTA+GGG | + | chr1_2:21389045-21389064 | None:intergenic | 30.0% |
| TATAATGTACTCATCGTAGT+CGG | + | chr1_2:21389155-21389174 | None:intergenic | 30.0% | |
| GAGTACATTATAGACAGTAA+AGG | - | chr1_2:21389163-21389182 | Msa0062180:CDS | 30.0% | |
| GTACATTATAGACAGTAAAG+GGG | - | chr1_2:21389165-21389184 | Msa0062180:CDS | 30.0% | |
| ! | GAGCAATGATGTTTTCAAAT+AGG | + | chr1_2:21389222-21389241 | None:intergenic | 30.0% |
| CACAAAAAATGTGGTAACAA+TGG | - | chr1_2:21389373-21389392 | Msa0062180:CDS | 30.0% | |
| ! | CTATTTGTTTCTTTGGTTAC+TGG | - | chr1_2:21389481-21389500 | Msa0062180:CDS | 30.0% |
| AGGTTATTGAATGGGAAAAA+TGG | - | chr1_2:21389548-21389567 | Msa0062180:CDS | 30.0% | |
| GGTTATTGAATGGGAAAAAT+GGG | - | chr1_2:21389549-21389568 | Msa0062180:CDS | 30.0% | |
| !!! | TTGACCATAGTTTTAATAGG+TGG | - | chr1_2:21389757-21389776 | Msa0062180:CDS | 30.0% |
| ATGAGAAAGAGAAGAAGCTA+TGG | + | chr1_2:21385812-21385831 | None:intergenic | 35.0% | |
| TTACCAAGTGGTTGAATAAC+AGG | + | chr1_2:21385847-21385866 | None:intergenic | 35.0% | |
| TTGTGATGAACTTTACCAAG+TGG | + | chr1_2:21385859-21385878 | None:intergenic | 35.0% | |
| GATACAATAGAATCAGGTTC+AGG | - | chr1_2:21386033-21386052 | Msa0062180:CDS | 35.0% | |
| GTACCATGTAATTCGATTCA+GGG | + | chr1_2:21386173-21386192 | None:intergenic | 35.0% | |
| TGTACCATGTAATTCGATTC+AGG | + | chr1_2:21386174-21386193 | None:intergenic | 35.0% | |
| !!! | AGTGACGAGTATTTTGATAG+TGG | - | chr1_2:21386201-21386220 | Msa0062180:CDS | 35.0% |
| !! | CTAATTGCATGTGGCTTTAA+TGG | + | chr1_2:21386234-21386253 | None:intergenic | 35.0% |
| CAATTAGACCAGGAAAGAAA+GGG | - | chr1_2:21386247-21386266 | Msa0062180:CDS | 35.0% | |
| TACAAGTGTCTTAAAGGGAA+TGG | - | chr1_2:21386276-21386295 | Msa0062180:CDS | 35.0% | |
| GAATGGTTTAACTGAGAAAG+AGG | - | chr1_2:21386293-21386312 | Msa0062180:CDS | 35.0% | |
| AAACTGTGTGATAAGAGCAA+TGG | - | chr1_2:21386347-21386366 | Msa0062180:CDS | 35.0% | |
| AACTGTGTGATAAGAGCAAT+GGG | - | chr1_2:21386348-21386367 | Msa0062180:CDS | 35.0% | |
| GAGAATAAGAGAAGGAATCT+TGG | - | chr1_2:21386423-21386442 | Msa0062180:CDS | 35.0% | |
| GGAATCTTGGAAAATGTTCT+AGG | - | chr1_2:21386436-21386455 | Msa0062180:CDS | 35.0% | |
| ! | TTAACTTGAACAAGATGAGG+TGG | + | chr1_2:21386540-21386559 | None:intergenic | 35.0% |
| TTGTCATACCAATAAGATCC+TGG | + | chr1_2:21386633-21386652 | None:intergenic | 35.0% | |
| TATTGGTATGACAAAGCTTC+TGG | - | chr1_2:21386639-21386658 | Msa0062180:intron | 35.0% | |
| ! | ATGACAAAGCTTCTGGATTT+TGG | - | chr1_2:21386646-21386665 | Msa0062180:intron | 35.0% |
| ! | TGACAAAGCTTCTGGATTTT+GGG | - | chr1_2:21386647-21386666 | Msa0062180:intron | 35.0% |
| !!! | GCTCTTTTTTTGTAATCTCG+CGG | + | chr1_2:21386871-21386890 | None:intergenic | 35.0% |
| TAACATTGCTTGTTTGCAGA+TGG | - | chr1_2:21386981-21387000 | Msa0062180:intron | 35.0% | |
| ! | TGAAGGAACTCCTAACTTTT+GGG | - | chr1_2:21387017-21387036 | Msa0062180:CDS | 35.0% |
| GAACGATAAAGGATGCATAT+GGG | - | chr1_2:21387077-21387096 | Msa0062180:CDS | 35.0% | |
| AACGATAAAGGATGCATATG+GGG | - | chr1_2:21387078-21387097 | Msa0062180:CDS | 35.0% | |
| GAAGACACGATATTTCATCA+CGG | + | chr1_2:21387289-21387308 | None:intergenic | 35.0% | |
| ! | TCTGTTTTCTTTTGAACTGG+GGG | - | chr1_2:21387328-21387347 | Msa0062180:intron | 35.0% |
| !! | GTCATAGATTTTGAAGGAAC+CGG | + | chr1_2:21387418-21387437 | None:intergenic | 35.0% |
| ! | TTTGAAGTGTCTTCTGATGA+AGG | + | chr1_2:21387477-21387496 | None:intergenic | 35.0% |
| ! | CTTGTTGGTTGTGTAAATTC+TGG | - | chr1_2:21387505-21387524 | Msa0062180:CDS | 35.0% |
| ! | TGAAGCTCATTTTCAGAGAA+AGG | + | chr1_2:21387667-21387686 | None:intergenic | 35.0% |
| GATACAACACCCTATTCAAT+TGG | - | chr1_2:21387994-21388013 | Msa0062180:intron | 35.0% | |
| AGTCTTGGACCAATTGAATA+GGG | + | chr1_2:21388006-21388025 | None:intergenic | 35.0% | |
| ! | ATGCATTTTGTCAGGTAACA+TGG | - | chr1_2:21388053-21388072 | Msa0062180:intron | 35.0% |
| ! | GTGCTAACTATTTTCTAGAC+AGG | - | chr1_2:21388193-21388212 | Msa0062180:CDS | 35.0% |
| ! | TCAGATCATTGATACCCTTT+TGG | - | chr1_2:21388233-21388252 | Msa0062180:intron | 35.0% |
| TGGACATATTATATGCTGAG+GGG | - | chr1_2:21388504-21388523 | Msa0062180:intron | 35.0% | |
| ATCAACATGATTCTTCTCTC+AGG | - | chr1_2:21388606-21388625 | Msa0062180:intron | 35.0% | |
| ! | TGGCAAAAGTTGTTTCAGAA+CGG | - | chr1_2:21388758-21388777 | Msa0062180:CDS | 35.0% |
| AACTTTCGATGATACTAGCA+AGG | + | chr1_2:21388792-21388811 | None:intergenic | 35.0% | |
| CAACTCGAGTTTAAGTACTA+TGG | - | chr1_2:21388828-21388847 | Msa0062180:CDS | 35.0% | |
| !! | AGGGGTACTACTATATAAAC+TGG | + | chr1_2:21388855-21388874 | None:intergenic | 35.0% |
| CTTATAGTAGCATAGTGCAT+AGG | + | chr1_2:21388895-21388914 | None:intergenic | 35.0% | |
| GCACTATGCTACTATAAGTT+AGG | - | chr1_2:21388897-21388916 | Msa0062180:intron | 35.0% | |
| !!! | GGTAAGAAAGCTTTTAGAAC+AGG | + | chr1_2:21389004-21389023 | None:intergenic | 35.0% |
| CTGTTAGGGAACATAAAGTA+GGG | + | chr1_2:21389031-21389050 | None:intergenic | 35.0% | |
| TCTGTTAGGGAACATAAAGT+AGG | + | chr1_2:21389032-21389051 | None:intergenic | 35.0% | |
| !! | CTAATGAGTTGGTATCTGTT+AGG | + | chr1_2:21389046-21389065 | None:intergenic | 35.0% |
| TTGGATGTACTCTAATGAGT+TGG | + | chr1_2:21389057-21389076 | None:intergenic | 35.0% | |
| AGAGTACATCCAAAAATCCT+TGG | - | chr1_2:21389064-21389083 | Msa0062180:CDS | 35.0% | |
| ! | CAGTTTTCTCCAAGGATTTT+TGG | + | chr1_2:21389076-21389095 | None:intergenic | 35.0% |
| GACGGAGAACAAAATAACAT+CGG | + | chr1_2:21389125-21389144 | None:intergenic | 35.0% | |
| GGTTGCTACAAACAAAATGT+TGG | - | chr1_2:21389186-21389205 | Msa0062180:CDS | 35.0% | |
| TTCCTCAAGAAGATCGAATT+TGG | + | chr1_2:21389284-21389303 | None:intergenic | 35.0% | |
| TCGAACATGTTCCATTAACA+AGG | - | chr1_2:21389308-21389327 | Msa0062180:CDS | 35.0% | |
| !!! | CTGGTTTTGTGAATTCAATC+CGG | - | chr1_2:21389336-21389355 | Msa0062180:CDS | 35.0% |
| ! | AAAGCACTTTGAGCTAATGA+AGG | + | chr1_2:21389406-21389425 | None:intergenic | 35.0% |
| ATGGTAGAGAGGTTATTGAA+TGG | - | chr1_2:21389539-21389558 | Msa0062180:CDS | 35.0% | |
| TGGTAGAGAGGTTATTGAAT+GGG | - | chr1_2:21389540-21389559 | Msa0062180:CDS | 35.0% | |
| GAGATTACTTCAACAACCAA+TGG | - | chr1_2:21389598-21389617 | Msa0062180:CDS | 35.0% | |
| GGTTCCACCTATTAAAACTA+TGG | + | chr1_2:21389764-21389783 | None:intergenic | 35.0% | |
| ! | TCTGGGATTGAATGATCAAG+AGG | + | chr1_2:21385751-21385770 | None:intergenic | 40.0% |
| GTACCTGTTATTCAACCACT+TGG | - | chr1_2:21385841-21385860 | Msa0062180:three_prime_UTR | 40.0% | |
| ACATGTTAAGAATCCGTCTG+CGG | - | chr1_2:21386134-21386153 | Msa0062180:CDS | 40.0% | |
| TTTCCTGGTCTAATTGCATG+TGG | + | chr1_2:21386243-21386262 | None:intergenic | 40.0% | |
| GCAATTAGACCAGGAAAGAA+AGG | - | chr1_2:21386246-21386265 | Msa0062180:CDS | 40.0% | |
| TAACAAGACCCTTTCTTTCC+TGG | + | chr1_2:21386258-21386277 | None:intergenic | 40.0% | |
| !! | AGGAAATGTGTTGGTTGCAT+TGG | - | chr1_2:21386387-21386406 | Msa0062180:CDS | 40.0% |
| !! | TGTGTTGGTTGCATTGGTTA+TGG | - | chr1_2:21386393-21386412 | Msa0062180:CDS | 40.0% |
| AGCTTAAGCCAGGATCTTAT+TGG | - | chr1_2:21386622-21386641 | Msa0062180:intron | 40.0% | |
| ! | GACAAAGCTTCTGGATTTTG+GGG | - | chr1_2:21386648-21386667 | Msa0062180:intron | 40.0% |
| TGTAATCTCGCGGTCATTTA+TGG | + | chr1_2:21386861-21386880 | None:intergenic | 40.0% | |
| AAGTTAGGAGTTCCTTCACA+TGG | + | chr1_2:21387015-21387034 | None:intergenic | 40.0% | |
| ! | GTGAAGGAACTCCTAACTTT+TGG | - | chr1_2:21387016-21387035 | Msa0062180:CDS | 40.0% |
| TCAGGATTCACCCAAAAGTT+AGG | + | chr1_2:21387030-21387049 | None:intergenic | 40.0% | |
| !! | AACTTTTGGGTGAATCCTGA+TGG | - | chr1_2:21387030-21387049 | Msa0062180:CDS | 40.0% |
| !! | TGAATCCTGATGGATTGTAC+CGG | - | chr1_2:21387040-21387059 | Msa0062180:CDS | 40.0% |
| GGAACGATAAAGGATGCATA+TGG | - | chr1_2:21387076-21387095 | Msa0062180:CDS | 40.0% | |
| CTTTCTTCAGGCTCAAACAA+AGG | - | chr1_2:21387369-21387388 | Msa0062180:intron | 40.0% | |
| !! | AGGAGCATTATACAACAGCT+TGG | + | chr1_2:21387647-21387666 | None:intergenic | 40.0% |
| GTATACCAAGGTAGGTAAAC+AGG | + | chr1_2:21387717-21387736 | None:intergenic | 40.0% | |
| AAAAAGCTTACCAGATGACG+AGG | + | chr1_2:21387812-21387831 | None:intergenic | 40.0% | |
| AAGCACTTGTGAGTTCGTAT+AGG | + | chr1_2:21387839-21387858 | None:intergenic | 40.0% | |
| CAGTCTTGGACCAATTGAAT+AGG | + | chr1_2:21388007-21388026 | None:intergenic | 40.0% | |
| TCTGAGAAACTCTTCAGTCT+TGG | + | chr1_2:21388021-21388040 | None:intergenic | 40.0% | |
| GACTGAAGAGTTTCTCAGAT+TGG | - | chr1_2:21388022-21388041 | Msa0062180:intron | 40.0% | |
| CAAGTTTACTGTGTCAACAG+TGG | - | chr1_2:21388339-21388358 | Msa0062180:intron | 40.0% | |
| TATTCTGTCATGAATGTGGC+AGG | - | chr1_2:21388395-21388414 | Msa0062180:intron | 40.0% | |
| GTGGCAGGTGTATAAAATCA+AGG | - | chr1_2:21388410-21388429 | Msa0062180:intron | 40.0% | |
| ATTTCCTAAGTCAAGCAGAG+AGG | - | chr1_2:21388565-21388584 | Msa0062180:CDS | 40.0% | |
| GGGAACATAAAGTAGGGTTA+GGG | + | chr1_2:21389025-21389044 | None:intergenic | 40.0% | |
| AGGGAACATAAAGTAGGGTT+AGG | + | chr1_2:21389026-21389045 | None:intergenic | 40.0% | |
| CACCAAATTCGATCTTCTTG+AGG | - | chr1_2:21389279-21389298 | Msa0062180:CDS | 40.0% | |
| TTCCATTAACAAGGTGTGAC+TGG | - | chr1_2:21389317-21389336 | Msa0062180:CDS | 40.0% | |
| AACCAGTCACACCTTGTTAA+TGG | + | chr1_2:21389322-21389341 | None:intergenic | 40.0% | |
| ATCGATGAAGCTCTTCGATA+TGG | - | chr1_2:21389520-21389539 | Msa0062180:CDS | 40.0% | |
| ! | TGAAGTACTTGCATCTCCAT+TGG | + | chr1_2:21389617-21389636 | None:intergenic | 40.0% |
| AGAGGTGAATTAGCTCAATG+AGG | - | chr1_2:21389722-21389741 | Msa0062180:CDS | 40.0% | |
| GAGGTGAATTAGCTCAATGA+GGG | - | chr1_2:21389723-21389742 | Msa0062180:CDS | 40.0% | |
| GGGATTGAATGATCAAGAGG+AGG | + | chr1_2:21385748-21385767 | None:intergenic | 45.0% | |
| GAAGAAGCTATGGATGCAAC+AGG | + | chr1_2:21385802-21385821 | None:intergenic | 45.0% | |
| TGTAATTCGATTCAGGGTCG+CGG | + | chr1_2:21386167-21386186 | None:intergenic | 45.0% | |
| CGACCCTGAATCGAATTACA+TGG | - | chr1_2:21386167-21386186 | Msa0062180:CDS | 45.0% | |
| AAGCCACATGCAATTAGACC+AGG | - | chr1_2:21386237-21386256 | Msa0062180:CDS | 45.0% | |
| CCAACACATTTCCTTCCTTC+TGG | + | chr1_2:21386381-21386400 | None:intergenic | 45.0% | |
| CCAGAAGGAAGGAAATGTGT+TGG | - | chr1_2:21386378-21386397 | Msa0062180:CDS | 45.0% | |
| GATCCTGGCTTAAGCTCTTT+AGG | + | chr1_2:21386618-21386637 | None:intergenic | 45.0% | |
| !! | AGCTTCTGGATTTTGGGGAA+AGG | - | chr1_2:21386653-21386672 | Msa0062180:intron | 45.0% |
| GGGCTGATAATTTCACAAGG+TGG | + | chr1_2:21386779-21386798 | None:intergenic | 45.0% | |
| TGGGGGCTGATAATTTCACA+AGG | + | chr1_2:21386782-21386801 | None:intergenic | 45.0% | |
| TTGCAGAGAAACGCAAGCAA+TGG | - | chr1_2:21386821-21386840 | Msa0062180:intron | 45.0% | |
| !! | GAATCCTGATGGATTGTACC+GGG | - | chr1_2:21387041-21387060 | Msa0062180:CDS | 45.0% |
| ! | ATGGATTGTACCGGGAAGAA+GGG | - | chr1_2:21387049-21387068 | Msa0062180:CDS | 45.0% |
| GAAGGGCAAAGGAACGATAA+AGG | - | chr1_2:21387066-21387085 | Msa0062180:CDS | 45.0% | |
| TAAAGGATGCATATGGGGCA+AGG | - | chr1_2:21387083-21387102 | Msa0062180:CDS | 45.0% | |
| CGATATTTCATCACGGCGTT+TGG | + | chr1_2:21387282-21387301 | None:intergenic | 45.0% | |
| AGTGTCTTCTGATGAAGGCT+TGG | + | chr1_2:21387472-21387491 | None:intergenic | 45.0% | |
| GGAGCATATATGAATGGACG+AGG | + | chr1_2:21387584-21387603 | None:intergenic | 45.0% | |
| AGCAACCTGTTTACCTACCT+TGG | - | chr1_2:21387709-21387728 | Msa0062180:intron | 45.0% | |
| TACCTACCTTGGTATACTGC+TGG | - | chr1_2:21387720-21387739 | Msa0062180:intron | 45.0% | |
| TACCTTGGTATACTGCTGGA+GGG | - | chr1_2:21387724-21387743 | Msa0062180:intron | 45.0% | |
| ! | TAGTGTATGACTTGTGCAGC+AGG | - | chr1_2:21387952-21387971 | Msa0062180:CDS | 45.0% |
| ! | AGTGTATGACTTGTGCAGCA+GGG | - | chr1_2:21387953-21387972 | Msa0062180:CDS | 45.0% |
| ATCCAACAGCCTCACATCAA+TGG | - | chr1_2:21388535-21388554 | Msa0062180:CDS | 45.0% | |
| TTCCATTGATGTGAGGCTGT+TGG | + | chr1_2:21388540-21388559 | None:intergenic | 45.0% | |
| AGTAGCATAGTGCATAGGGA+AGG | + | chr1_2:21388890-21388909 | None:intergenic | 45.0% | |
| TCCTTGGAGAAAACTGCAAG+TGG | - | chr1_2:21389080-21389099 | Msa0062180:CDS | 45.0% | |
| ! | ACCACTTGCAGTTTTCTCCA+AGG | + | chr1_2:21389084-21389103 | None:intergenic | 45.0% |
| TGGAGAAAACTGCAAGTGGT+TGG | - | chr1_2:21389084-21389103 | Msa0062180:CDS | 45.0% | |
| ATCGTAGTCGGTTAAGGAGA+CGG | + | chr1_2:21389143-21389162 | None:intergenic | 45.0% | |
| GTACTCATCGTAGTCGGTTA+AGG | + | chr1_2:21389149-21389168 | None:intergenic | 45.0% | |
| AGAGCTTCATCGATCGTATC+AGG | + | chr1_2:21389514-21389533 | None:intergenic | 45.0% | |
| AGCTCTTCGATATGGTAGAG+AGG | - | chr1_2:21389528-21389547 | Msa0062180:CDS | 45.0% | |
| ! | ATCAGGTTCAGGTTCGCGTT+CGG | - | chr1_2:21386044-21386063 | Msa0062180:CDS | 50.0% |
| GCAATGGGATCTATGCCAGA+AGG | - | chr1_2:21386363-21386382 | Msa0062180:CDS | 50.0% | |
| TGGGATCTATGCCAGAAGGA+AGG | - | chr1_2:21386367-21386386 | Msa0062180:CDS | 50.0% | |
| CCTGGCTTAAGCTCTTTAGG+TGG | + | chr1_2:21386615-21386634 | None:intergenic | 50.0% | |
| CCACCTAAAGAGCTTAAGCC+AGG | - | chr1_2:21386612-21386631 | Msa0062180:intron | 50.0% | |
| !! | ATGGCAAGAGTGCCATGTGA+AGG | - | chr1_2:21387000-21387019 | Msa0062180:CDS | 50.0% |
| TCTTCCCGGTACAATCCATC+AGG | + | chr1_2:21387048-21387067 | None:intergenic | 50.0% | |
| !! | GATGGATTGTACCGGGAAGA+AGG | - | chr1_2:21387048-21387067 | Msa0062180:CDS | 50.0% |
| GTAGGAGACGTGGGCATTAT+TGG | - | chr1_2:21387256-21387275 | Msa0062180:intron | 50.0% | |
| CTCCAGCAGTATACCAAGGT+AGG | + | chr1_2:21387725-21387744 | None:intergenic | 50.0% | |
| CTACCTTGGTATACTGCTGG+AGG | - | chr1_2:21387723-21387742 | Msa0062180:intron | 50.0% | |
| ACCTTGGTATACTGCTGGAG+GGG | - | chr1_2:21387725-21387744 | Msa0062180:intron | 50.0% | |
| GATGACGAGGACTCATCAGA+AGG | + | chr1_2:21387799-21387818 | None:intergenic | 50.0% | |
| TCTGATGAGTCCTCGTCATC+TGG | - | chr1_2:21387799-21387818 | Msa0062180:intron | 50.0% | |
| ACTTGTGCAGCAGGGAATTC+CGG | - | chr1_2:21387961-21387980 | Msa0062180:intron | 50.0% | |
| CAGCTGCTATGCGCGAATAT+GGG | - | chr1_2:21388088-21388107 | Msa0062180:CDS | 50.0% | |
| TATGCGCGAATATGGGCCAA+TGG | - | chr1_2:21388095-21388114 | Msa0062180:CDS | 50.0% | |
| CTCCACAAATCCTCCACCAT+TGG | + | chr1_2:21388114-21388133 | None:intergenic | 50.0% | |
| GGAGGATTTGTGGAGAGATG+AGG | - | chr1_2:21388119-21388138 | Msa0062180:CDS | 50.0% | |
| GACTCCTCTCTGCTTGACTT+AGG | + | chr1_2:21388572-21388591 | None:intergenic | 50.0% | |
| ! | TCAGGTTCAGGTTCGCGTTC+GGG | - | chr1_2:21386045-21386064 | Msa0062180:CDS | 55.0% |
| TCGCGGAATGTTACCGCAGA+CGG | + | chr1_2:21386150-21386169 | None:intergenic | 55.0% | |
| ATCAGCCCCCAGTTGAACGT+TGG | - | chr1_2:21386791-21386810 | Msa0062180:intron | 55.0% | |
| TGTACCGGGAAGAAGGGCAA+AGG | - | chr1_2:21387055-21387074 | Msa0062180:CDS | 55.0% | |
| CGTTCCTTTGCCCTTCTTCC+CGG | + | chr1_2:21387062-21387081 | None:intergenic | 55.0% | |
| CCACGTCTCCTACTACAGAG+CGG | + | chr1_2:21387249-21387268 | None:intergenic | 55.0% | |
| CGCTCTGTAGTAGGAGACGT+GGG | - | chr1_2:21387247-21387266 | Msa0062180:intron | 55.0% | |
| GTGTGCTCTTCTGTCACTGC+CGG | - | chr1_2:21387396-21387415 | Msa0062180:intron | 55.0% | |
| CCATATTCGCGCATAGCAGC+TGG | + | chr1_2:21388090-21388109 | None:intergenic | 55.0% | |
| CCAGCTGCTATGCGCGAATA+TGG | - | chr1_2:21388087-21388106 | Msa0062180:CDS | 55.0% | |
| CGAATATGGGCCAATGGTGG+AGG | - | chr1_2:21388101-21388120 | Msa0062180:CDS | 55.0% | |
| ! | GGCCAATGGTGGAGGATTTG+TGG | - | chr1_2:21388109-21388128 | Msa0062180:CDS | 55.0% |
| GTGGAGAGATGAGGCGATTC+AGG | - | chr1_2:21388128-21388147 | Msa0062180:CDS | 55.0% | |
| CGATTCAGGCGACGTACAAC+AGG | - | chr1_2:21388142-21388161 | Msa0062180:CDS | 55.0% | |
| AGCCCCCAGTTGAACGTTGG+CGG | - | chr1_2:21386794-21386813 | Msa0062180:intron | 60.0% | |
| GACCGCCAACGTTCAACTGG+GGG | + | chr1_2:21386799-21386818 | None:intergenic | 60.0% | |
| CGACCGCCAACGTTCAACTG+GGG | + | chr1_2:21386800-21386819 | None:intergenic | 60.0% | |
| GCGACCGCCAACGTTCAACT+GGG | + | chr1_2:21386801-21386820 | None:intergenic | 60.0% | |
| AGCGACCGCCAACGTTCAAC+TGG | + | chr1_2:21386802-21386821 | None:intergenic | 60.0% | |
| CACTGCAGCCGCTCTGTAGT+AGG | - | chr1_2:21387238-21387257 | Msa0062180:intron | 60.0% | |
| CCGCTCTGTAGTAGGAGACG+TGG | - | chr1_2:21387246-21387265 | Msa0062180:intron | 60.0% | |
| GCCCCTCCAGCAGTATACCA+AGG | + | chr1_2:21387729-21387748 | None:intergenic | 60.0% | |
| GCGCGAATATGGGCCAATGG+TGG | - | chr1_2:21388098-21388117 | Msa0062180:CDS | 60.0% | |
| GGAAGGTCGCTCGAGTACAG+GGG | + | chr1_2:21388873-21388892 | None:intergenic | 60.0% | |
| GGGAAGGTCGCTCGAGTACA+GGG | + | chr1_2:21388874-21388893 | None:intergenic | 60.0% | |
| AGGGAAGGTCGCTCGAGTAC+AGG | + | chr1_2:21388875-21388894 | None:intergenic | 60.0% | |
| ! | TATACTGCTGGAGGGGCGCG+AGG | - | chr1_2:21387732-21387751 | Msa0062180:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 21385682 | 21389939 | 21385682 | ID=Msa0062180;Name=Msa0062180 |
| chr1_2 | mRNA | 21385682 | 21389939 | 21385682 | ID=Msa0062180-mRNA-1;Parent=Msa0062180;Name=Msa0062180-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.87|1|1|1|8|300|860 |
| chr1_2 | exon | 21385682 | 21386570 | 21385682 | ID=Msa0062180-mRNA-1:exon:7966;Parent=Msa0062180-mRNA-1 |
| chr1_2 | exon | 21386994 | 21387157 | 21386994 | ID=Msa0062180-mRNA-1:exon:7965;Parent=Msa0062180-mRNA-1 |
| chr1_2 | exon | 21387406 | 21387650 | 21387406 | ID=Msa0062180-mRNA-1:exon:7964;Parent=Msa0062180-mRNA-1 |
| chr1_2 | exon | 21387801 | 21387978 | 21387801 | ID=Msa0062180-mRNA-1:exon:7963;Parent=Msa0062180-mRNA-1 |
| chr1_2 | exon | 21388072 | 21388242 | 21388072 | ID=Msa0062180-mRNA-1:exon:7962;Parent=Msa0062180-mRNA-1 |
| chr1_2 | exon | 21388517 | 21388621 | 21388517 | ID=Msa0062180-mRNA-1:exon:7961;Parent=Msa0062180-mRNA-1 |
| chr1_2 | exon | 21388717 | 21388854 | 21388717 | ID=Msa0062180-mRNA-1:exon:7960;Parent=Msa0062180-mRNA-1 |
| chr1_2 | exon | 21388947 | 21389939 | 21388947 | ID=Msa0062180-mRNA-1:exon:7959;Parent=Msa0062180-mRNA-1 |
| chr1_2 | CDS | 21388947 | 21389939 | 21388947 | ID=Msa0062180-mRNA-1:cds;Parent=Msa0062180-mRNA-1 |
| chr1_2 | CDS | 21388717 | 21388854 | 21388717 | ID=Msa0062180-mRNA-1:cds;Parent=Msa0062180-mRNA-1 |
| chr1_2 | CDS | 21388517 | 21388621 | 21388517 | ID=Msa0062180-mRNA-1:cds;Parent=Msa0062180-mRNA-1 |
| chr1_2 | CDS | 21388072 | 21388242 | 21388072 | ID=Msa0062180-mRNA-1:cds;Parent=Msa0062180-mRNA-1 |
| chr1_2 | CDS | 21387801 | 21387978 | 21387801 | ID=Msa0062180-mRNA-1:cds;Parent=Msa0062180-mRNA-1 |
| chr1_2 | CDS | 21387406 | 21387650 | 21387406 | ID=Msa0062180-mRNA-1:cds;Parent=Msa0062180-mRNA-1 |
| chr1_2 | CDS | 21386994 | 21387157 | 21386994 | ID=Msa0062180-mRNA-1:cds;Parent=Msa0062180-mRNA-1 |
| chr1_2 | CDS | 21385982 | 21386570 | 21385982 | ID=Msa0062180-mRNA-1:cds;Parent=Msa0062180-mRNA-1 |
| chr1_2 | three_prime_UTR | 21385682 | 21385981 | 21385682 | ID=Msa0062180-mRNA-1:three_prime_utr;Parent=Msa0062180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
