Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405820 | XP_013466724.1 | 95.093 | 856 | 42 | 0 | 1 | 856 | 16 | 871 | 0.0 | 1588 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405820 | sp|O80462|XLG1_ARATH | 48.924 | 883 | 390 | 16 | 15 | 848 | 11 | 881 | 0.0 | 805 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405820 | A0A072VFF3 | 95.093 | 856 | 42 | 0 | 1 | 856 | 16 | 871 | 0.0 | 1588 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa1405820 | 0.844828 | 5.934756e-59 | -8.615850e-47 |
| Msa0013280 | Msa1405820 | 0.901349 | 2.932768e-78 | -8.615850e-47 |
| Msa0062180 | Msa1405820 | 0.886801 | 2.492874e-72 | -8.615850e-47 |
| Msa0106530 | Msa1405820 | 0.965237 | 2.409825e-124 | -8.615850e-47 |
| Msa1344890 | Msa1405820 | 0.810434 | 1.154733e-50 | -8.615850e-47 |
| Msa1353880 | Msa1405820 | 0.803365 | 3.610001e-49 | -8.615850e-47 |
| Msa1363810 | Msa1405820 | 0.844880 | 5.745670e-59 | -8.615850e-47 |
| Msa1367530 | Msa1405820 | 0.839360 | 1.659955e-57 | -8.615850e-47 |
| Msa1379580 | Msa1405820 | 0.810996 | 8.731090e-51 | -8.615850e-47 |
| Msa1389760 | Msa1405820 | 0.800849 | 1.188301e-48 | -8.615850e-47 |
| Msa1405820 | Msa1408180 | 0.807907 | 4.019264e-50 | -8.615850e-47 |
| Msa1405820 | Msa1424580 | 0.837768 | 4.277522e-57 | -8.615850e-47 |
| Msa1405820 | Msa1448980 | 0.807066 | 6.061675e-50 | -8.615850e-47 |
| Msa0708290 | Msa1405820 | 0.817336 | 3.476809e-52 | -8.615850e-47 |
| Msa0708300 | Msa1405820 | 0.810372 | 1.191306e-50 | -8.615850e-47 |
| Msa0162690 | Msa1405820 | 0.801196 | 1.009001e-48 | -8.615850e-47 |
| Msa1236730 | Msa1405820 | 0.804045 | 2.608138e-49 | -8.615850e-47 |
| Msa1285200 | Msa1405820 | 0.803606 | 3.217409e-49 | -8.615850e-47 |
| Msa1323280 | Msa1405820 | 0.813759 | 2.175587e-51 | -8.615850e-47 |
| Msa0377840 | Msa1405820 | 0.855565 | 5.793258e-62 | -8.615850e-47 |
| Msa0408340 | Msa1405820 | 0.808940 | 2.419491e-50 | -8.615850e-47 |
| Msa0426560 | Msa1405820 | 0.856046 | 4.192159e-62 | -8.615850e-47 |
| Msa0473140 | Msa1405820 | 0.839444 | 1.578788e-57 | -8.615850e-47 |
| Msa1043120 | Msa1405820 | 0.823838 | 1.116558e-53 | -8.615850e-47 |
| Msa0277410 | Msa1405820 | 0.824482 | 7.882406e-54 | -8.615850e-47 |
| Msa0282720 | Msa1405820 | 0.800805 | 1.212872e-48 | -8.615850e-47 |
| Msa1184750 | Msa1405820 | 0.805566 | 1.254673e-49 | -8.615850e-47 |
| Msa0517610 | Msa1405820 | 0.858457 | 8.133405e-63 | -8.615850e-47 |
| Msa0524330 | Msa1405820 | 0.836102 | 1.139304e-56 | -8.615850e-47 |
| Msa0524440 | Msa1405820 | 0.843236 | 1.586286e-58 | -8.615850e-47 |
| Msa0572560 | Msa1405820 | 0.854194 | 1.447811e-61 | -8.615850e-47 |
| Msa0574570 | Msa1405820 | 0.818839 | 1.589651e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405820 | MtrunA17_Chr1g0162561 | 95.093 | 856 | 42 | 0 | 1 | 856 | 16 | 871 | 0.0 | 1588 |
| Msa1405820 | MtrunA17_Chr5g0402991 | 57.941 | 680 | 270 | 6 | 180 | 848 | 226 | 900 | 0.0 | 815 |
| Msa1405820 | MtrunA17_Chr8g0374061 | 57.726 | 686 | 277 | 6 | 163 | 838 | 85 | 767 | 0.0 | 804 |
| Msa1405820 | MtrunA17_Chr6g0479291 | 42.373 | 885 | 426 | 16 | 12 | 832 | 39 | 903 | 0.0 | 654 |
| Msa1405820 | MtrunA17_Chr5g0410081 | 49.543 | 656 | 302 | 10 | 194 | 833 | 171 | 813 | 0.0 | 618 |
| Msa1405820 | MtrunA17_Chr1g0151141 | 29.592 | 392 | 202 | 15 | 443 | 826 | 36 | 361 | 1.36e-39 | 151 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405820 | AT2G23460.1 | 48.924 | 883 | 390 | 16 | 15 | 848 | 11 | 881 | 0.0 | 805 |
| Msa1405820 | AT4G34390.1 | 47.166 | 882 | 394 | 21 | 2 | 856 | 24 | 860 | 0.0 | 715 |
| Msa1405820 | AT4G34390.2 | 44.949 | 881 | 376 | 20 | 2 | 856 | 24 | 821 | 0.0 | 668 |
| Msa1405820 | AT1G31930.5 | 50.077 | 653 | 304 | 7 | 194 | 833 | 176 | 819 | 0.0 | 630 |
| Msa1405820 | AT1G31930.2 | 50.077 | 653 | 304 | 7 | 194 | 833 | 176 | 819 | 0.0 | 630 |
| Msa1405820 | AT1G31930.3 | 50.077 | 653 | 304 | 7 | 194 | 833 | 176 | 819 | 0.0 | 630 |
| Msa1405820 | AT1G31930.6 | 50.077 | 653 | 304 | 7 | 194 | 833 | 176 | 819 | 0.0 | 630 |
| Msa1405820 | AT1G31930.1 | 50.077 | 653 | 304 | 7 | 194 | 833 | 176 | 819 | 0.0 | 630 |
| Msa1405820 | AT1G31930.4 | 50.077 | 653 | 304 | 7 | 194 | 833 | 176 | 819 | 0.0 | 630 |
| Msa1405820 | AT2G26300.2 | 27.481 | 393 | 219 | 13 | 443 | 823 | 35 | 373 | 2.14e-39 | 150 |
| Msa1405820 | AT2G26300.1 | 27.481 | 393 | 219 | 13 | 443 | 823 | 35 | 373 | 2.14e-39 | 150 |
Find 170 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTCTTCTTCTTGAAATT+TGG | 0.098655 | tig0023172:+55547 | None:intergenic |
| TTAATGCAAAATTAAATATT+TGG | 0.104166 | tig0023172:+55007 | None:intergenic |
| ATGACAAAGCTTCTGGATTT+TGG | 0.105208 | tig0023172:-58130 | Msa1405820:CDS |
| ATGATTCTTTATACATTAAT+TGG | 0.131764 | tig0023172:+55143 | None:intergenic |
| TGTAATCTCGCGATCATTTA+TGG | 0.142922 | tig0023172:+57918 | None:intergenic |
| ACATGATGAGATTCTAAATT+TGG | 0.156467 | tig0023172:+58839 | None:intergenic |
| ATCTTGAAAGTAGGAATTTC+TGG | 0.194930 | tig0023172:+58998 | None:intergenic |
| CTATTTGTTTCTTTGGTTAC+TGG | 0.199983 | tig0023172:-55310 | Msa1405820:CDS |
| CCAGCTGCTATGCGCGAATA+TGG | 0.211059 | tig0023172:-56693 | Msa1405820:CDS |
| TAATGCAAAATTAAATATTT+GGG | 0.217522 | tig0023172:+55008 | None:intergenic |
| TCTTGTTATAAGTGTCTTAA+AGG | 0.219647 | tig0023172:-58506 | Msa1405820:CDS |
| CTAATTGCATGTGGCTTTAA+TGG | 0.231178 | tig0023172:+58545 | None:intergenic |
| TGTACCATGTAATTCGATTC+AGG | 0.234770 | tig0023172:+58605 | None:intergenic |
| AAGAACTCTATTTGTTTCTT+TGG | 0.238160 | tig0023172:-55317 | Msa1405820:CDS |
| TTCCTCAAGAAGATCGAATT+TGG | 0.241366 | tig0023172:+55510 | None:intergenic |
| AACCAGTCACACCTTGTTAA+TGG | 0.243332 | tig0023172:+55472 | None:intergenic |
| GATCCTGGTTTAAGCTCTTT+AGG | 0.246063 | tig0023172:+58161 | None:intergenic |
| TATTGGTATGACAAAGCTTC+TGG | 0.267593 | tig0023172:-58137 | Msa1405820:CDS |
| GTGAAGGAACTCCTAACTTT+TGG | 0.268980 | tig0023172:-57760 | Msa1405820:CDS |
| TTACCAAGTGGTTGAATAAC+AGG | 0.274199 | tig0023172:+58920 | None:intergenic |
| GAAGAATCATGTTGATATTC+AGG | 0.278566 | tig0023172:+56192 | None:intergenic |
| GTGGAGAGATGAGGCGATTC+AGG | 0.278751 | tig0023172:-56652 | Msa1405820:CDS |
| CCAACACATTTCCTTCCTTC+TGG | 0.281405 | tig0023172:+58398 | None:intergenic |
| CTTGTTGGTTGTGTAAATTC+TGG | 0.288160 | tig0023172:-57275 | Msa1405820:CDS |
| TAACAAGACCCTTTCTTTCC+TGG | 0.308070 | tig0023172:+58521 | None:intergenic |
| AGCTTAAACCAGGATCTTAT+TGG | 0.314240 | tig0023172:-58154 | Msa1405820:CDS |
| AGCGACCGCCAACGTTCAAC+TGG | 0.323370 | tig0023172:+57977 | None:intergenic |
| AGAGCTTCATCGATCGTATC+AGG | 0.331731 | tig0023172:+55280 | None:intergenic |
| ATCAGGCTCAGGTTCGCGTT+CGG | 0.345378 | tig0023172:-58732 | Msa1405820:CDS |
| TCAGGCTCAGGTTCGCGTTC+GGG | 0.349206 | tig0023172:-58731 | Msa1405820:CDS |
| GACTGAAGAGTTTCTCAGAT+TGG | 0.349631 | tig0023172:-56758 | Msa1405820:CDS |
| CAGTCTTGGACCAATTGAAT+AGG | 0.351169 | tig0023172:+56776 | None:intergenic |
| GGAATCTTGGAAAATGTTCT+AGG | 0.358970 | tig0023172:-58340 | Msa1405820:CDS |
| AGAAACAAATAGAGTTCTTT+CGG | 0.367235 | tig0023172:+55321 | None:intergenic |
| GAGAATAAGAGAAGGAATCT+TGG | 0.369931 | tig0023172:-58353 | Msa1405820:CDS |
| GGTTCCACCTATTAAAACTA+TGG | 0.371001 | tig0023172:+55030 | None:intergenic |
| AAGAGGGGCAAAAGAAAGAT+AGG | 0.372952 | tig0023172:-57712 | Msa1405820:CDS |
| AGATTATGAACCATCTGATA+TGG | 0.373775 | tig0023172:-56307 | Msa1405820:CDS |
| AAGAGTATTTACTAGAGAAT+AGG | 0.381469 | tig0023172:-57016 | Msa1405820:CDS |
| TTGTGATTGTTACTTATAAC+CGG | 0.382473 | tig0023172:+55436 | None:intergenic |
| GACTTATCATTAACAATAGA+AGG | 0.384451 | tig0023172:+55217 | None:intergenic |
| ATCAAAATACTCGTCACTTT+CGG | 0.389342 | tig0023172:+58580 | None:intergenic |
| TGTGTTGGTTGCATTGGTTA+TGG | 0.389856 | tig0023172:-58383 | Msa1405820:CDS |
| ACTTGTGCAGCAGGGAATTC+CGG | 0.393083 | tig0023172:-56819 | Msa1405820:intron |
| AAAAGAGCTGTTCGTACTAA+AGG | 0.394068 | tig0023172:-57893 | Msa1405820:intron |
| ATCGATGAAGCTCTTCGATA+TGG | 0.397848 | tig0023172:-55271 | Msa1405820:CDS |
| ACTTAATAGAGAAGAGCTTA+TGG | 0.402628 | tig0023172:-58207 | Msa1405820:CDS |
| TTTGAAGTGTCTTCTGATGA+AGG | 0.403595 | tig0023172:+57306 | None:intergenic |
| TCAGGATTCACCCAAAAGTT+AGG | 0.406978 | tig0023172:+57749 | None:intergenic |
| GATACAACACCCTATTCAAT+TGG | 0.408891 | tig0023172:-56786 | Msa1405820:CDS |
| AGATGGTTCATAATCTATCT+TGG | 0.413177 | tig0023172:+56314 | None:intergenic |
| AGCATGTACTATATTTAAAC+AGG | 0.414927 | tig0023172:-57252 | Msa1405820:intron |
| AGAAAATAGTTAGCACTTCT+CGG | 0.421346 | tig0023172:+56594 | None:intergenic |
| GTATACCAAGGTAGGTAAAC+AGG | 0.427336 | tig0023172:+57066 | None:intergenic |
| AGTCTTGGACCAATTGAATA+GGG | 0.432909 | tig0023172:+56777 | None:intergenic |
| GTACTCATCGTAGTCGGTTA+AGG | 0.438650 | tig0023172:+55645 | None:intergenic |
| AGAAAGATAGGGGATGCATA+TGG | 0.441893 | tig0023172:-57700 | Msa1405820:CDS |
| TCTGATGAGTCCTCGTCATC+TGG | 0.443162 | tig0023172:-56981 | Msa1405820:intron |
| AGTTCACATTTCACATATAG+AGG | 0.445261 | tig0023172:-55087 | Msa1405820:three_prime_UTR |
| CTTGTTATAAGTGTCTTAAA+GGG | 0.445597 | tig0023172:-58505 | Msa1405820:CDS |
| CAGCTGCTATGCGCGAATAT+GGG | 0.447175 | tig0023172:-56692 | Msa1405820:CDS |
| GCAATTAGACCAGGAAAGAA+AGG | 0.447720 | tig0023172:-58530 | Msa1405820:CDS |
| GGCCAATGGTGGAGGATTTG+TGG | 0.449390 | tig0023172:-56671 | Msa1405820:CDS |
| CGATTCAGGCGACATACAAC+AGG | 0.455177 | tig0023172:-56638 | Msa1405820:CDS |
| AACTGTGTGATAAGAGCAAT+GGG | 0.459073 | tig0023172:-58428 | Msa1405820:CDS |
| CCATATTCGCGCATAGCAGC+TGG | 0.459253 | tig0023172:+56693 | None:intergenic |
| ATAAGCTCTTCTCTATTAAG+TGG | 0.463043 | tig0023172:+58209 | None:intergenic |
| GAATGGTTTAACTGAGAAAG+AGG | 0.463198 | tig0023172:-58483 | Msa1405820:CDS |
| AACTCGGATACAATAGAATC+AGG | 0.465049 | tig0023172:-58749 | Msa1405820:CDS |
| GAAAGATAGGGGATGCATAT+GGG | 0.466336 | tig0023172:-57699 | Msa1405820:CDS |
| TTCCATTAACAAGGTGTGAC+TGG | 0.468855 | tig0023172:-55474 | Msa1405820:CDS |
| TACCTACCTTGGTATACTGC+TGG | 0.469509 | tig0023172:-57060 | Msa1405820:CDS |
| ATAAACAGTAGAATCTGAAA+TGG | 0.469599 | tig0023172:+58862 | None:intergenic |
| GAAGAAGCTATAGATGCAAC+AGG | 0.472225 | tig0023172:+58965 | None:intergenic |
| GTACCATGTAATTCGATTCA+GGG | 0.473393 | tig0023172:+58606 | None:intergenic |
| TGAAGTACTTGCATCTCCAT+TGG | 0.478445 | tig0023172:+55177 | None:intergenic |
| AGTGTCTTCTGATGAAGGCT+TGG | 0.478728 | tig0023172:+57311 | None:intergenic |
| TATAAGTGTCTTAAAGGGAA+TGG | 0.483807 | tig0023172:-58500 | Msa1405820:CDS |
| AGCAACCTGTTTACCTACCT+TGG | 0.486761 | tig0023172:-57071 | Msa1405820:CDS |
| TTACTCAAATGCATATTGTC+AGG | 0.488666 | tig0023172:-56735 | Msa1405820:CDS |
| TCTGAGAAACTCTTCAGTCT+TGG | 0.490044 | tig0023172:+56762 | None:intergenic |
| TTGTCATACCAATAAGATCC+TGG | 0.493441 | tig0023172:+58146 | None:intergenic |
| TGGTAGAGAGGTTATTGAAT+GGG | 0.498729 | tig0023172:-55251 | Msa1405820:CDS |
| ATCAACATGATTCTTCTCTC+AGG | 0.498919 | tig0023172:-56185 | Msa1405820:intron |
| TATTGTTGATCAAGTTATGA+AGG | 0.500834 | tig0023172:-58291 | Msa1405820:CDS |
| ATCAAGTTATGAAGGATGAA+AGG | 0.501841 | tig0023172:-58283 | Msa1405820:CDS |
| AGGAAATGTGTTGGTTGCAT+TGG | 0.505797 | tig0023172:-58389 | Msa1405820:CDS |
| ATCCAACAGCCTCACATCAA+TGG | 0.506050 | tig0023172:-56256 | Msa1405820:CDS |
| CTTTCTTCAGGCTCAAACGA+AGG | 0.510101 | tig0023172:-57411 | Msa1405820:intron |
| CGAATATGGGCCAATGGTGG+AGG | 0.511353 | tig0023172:-56679 | Msa1405820:CDS |
| TCTTCGCGGTATGATCCATC+AGG | 0.512861 | tig0023172:+57731 | None:intergenic |
| TCTATTGTATCCGAGTTTGT+TGG | 0.515503 | tig0023172:+58755 | None:intergenic |
| CTCCACAAATCCTCCACCAT+TGG | 0.517066 | tig0023172:+56669 | None:intergenic |
| AAAGCACTTTGAGCTAATGA+AGG | 0.521537 | tig0023172:+55388 | None:intergenic |
| ACTTGATCAATCTTGAAAGT+AGG | 0.522431 | tig0023172:+58989 | None:intergenic |
| TTGGATGTACTCTAATGAGT+TGG | 0.523296 | tig0023172:+55737 | None:intergenic |
| TTGTGCTATTCTGTCACTGC+CGG | 0.525408 | tig0023172:-57384 | Msa1405820:CDS |
| CACCAAATTCGATCTTCTTG+AGG | 0.526416 | tig0023172:-55512 | Msa1405820:CDS |
| GACTCCTCTCTGCTTGACTT+AGG | 0.527015 | tig0023172:+56222 | None:intergenic |
| ATGGTAGAGAGGTTATTGAA+TGG | 0.529478 | tig0023172:-55252 | Msa1405820:CDS |
| ATGCATATTGTCAGGTAACA+TGG | 0.530914 | tig0023172:-56727 | Msa1405820:CDS |
| TCTATGACTCTTAACGATGA+AGG | 0.535043 | tig0023172:-57350 | Msa1405820:CDS |
| TACCTTGGTATACTGCTGGA+GGG | 0.538217 | tig0023172:-57056 | Msa1405820:CDS |
| CCACCTAAAGAGCTTAAACC+AGG | 0.542032 | tig0023172:-58164 | Msa1405820:CDS |
| TTCCATTGATGTGAGGCTGT+TGG | 0.543616 | tig0023172:+56254 | None:intergenic |
| GATGGATCATACCGCGAAGA+GGG | 0.548358 | tig0023172:-57728 | Msa1405820:CDS |
| CGACCCTGAATCGAATTACA+TGG | 0.550701 | tig0023172:-58609 | Msa1405820:CDS |
| TGGAGAAAACTGCAAGTGGT+TGG | 0.551701 | tig0023172:-55707 | Msa1405820:CDS |
| TTTCCTGGTCTAATTGCATG+TGG | 0.553272 | tig0023172:+58536 | None:intergenic |
| TGAGCTTCAAAATATCAAGT+TGG | 0.558146 | tig0023172:-57102 | Msa1405820:CDS |
| CTACCTTGGTATACTGCTGG+AGG | 0.561329 | tig0023172:-57057 | Msa1405820:CDS |
| GCGACCGCCAACGTTCAACT+GGG | 0.564176 | tig0023172:+57978 | None:intergenic |
| CAATTAGACCAGGAAAGAAA+GGG | 0.566155 | tig0023172:-58529 | Msa1405820:CDS |
| TAGGGGATGCATATGGGGCA+AGG | 0.566437 | tig0023172:-57693 | Msa1405820:intron |
| GAGATTACTTCAACAACCAA+TGG | 0.567210 | tig0023172:-55193 | Msa1405820:CDS |
| TATAATATGTCCATATCAGA+TGG | 0.568576 | tig0023172:+56297 | None:intergenic |
| AAACTGTGTGATAAGAGCAA+TGG | 0.568819 | tig0023172:-58429 | Msa1405820:CDS |
| GTACCTGTTATTCAACCACT+TGG | 0.572932 | tig0023172:-58923 | Msa1405820:CDS |
| GAGGTGAATTAGCTCAATGA+GGG | 0.575379 | tig0023172:-55068 | Msa1405820:three_prime_UTR |
| AATGCAAAATTAAATATTTG+GGG | 0.578045 | tig0023172:+55009 | None:intergenic |
| ATCGTAGTCGGTTAAGGAGA+CGG | 0.579802 | tig0023172:+55651 | None:intergenic |
| AGAGGGGCAAAAGAAAGATA+GGG | 0.580081 | tig0023172:-57711 | Msa1405820:CDS |
| CCTGGTTTAAGCTCTTTAGG+TGG | 0.582235 | tig0023172:+58164 | None:intergenic |
| GACCGCCAACGTTCAACTGG+GGG | 0.587168 | tig0023172:+57980 | None:intergenic |
| AGTTGCTACAAACAAAATGT+TGG | 0.587657 | tig0023172:-55605 | Msa1405820:CDS |
| TCGCGGAATGTAACCGCAGA+CGG | 0.589810 | tig0023172:+58629 | None:intergenic |
| GATACAATAGAATCAGGCTC+AGG | 0.591436 | tig0023172:-58743 | Msa1405820:CDS |
| TGATGATGTTCCAACAAACT+CGG | 0.592211 | tig0023172:-58765 | Msa1405820:CDS |
| TCTGGTATTGAATGATCAAG+AGG | 0.593030 | tig0023172:+59016 | None:intergenic |
| AAAGATAGGGGATGCATATG+GGG | 0.597578 | tig0023172:-57698 | Msa1405820:CDS |
| TATGGACATATTATATGCTG+AGG | 0.599670 | tig0023172:-56289 | Msa1405820:CDS |
| GAGTACATTATAGACAGTAA+AGG | 0.599991 | tig0023172:-55628 | Msa1405820:CDS |
| AGGAGCATTATACAACAGCT+TGG | 0.600716 | tig0023172:+57136 | None:intergenic |
| TTGCAGAGAAACGCAAGCAA+TGG | 0.605462 | tig0023172:-57955 | Msa1405820:CDS |
| TATACTGCTGGAGGGGCGCG+AGG | 0.606831 | tig0023172:-57048 | Msa1405820:CDS |
| ATGGCAAGAGTGCCATGTGA+AGG | 0.609127 | tig0023172:-57776 | Msa1405820:CDS |
| AAGCCACATGCAATTAGACC+AGG | 0.609283 | tig0023172:-58539 | Msa1405820:CDS |
| CTCCAGCAGTATACCAAGGT+AGG | 0.613672 | tig0023172:+57058 | None:intergenic |
| TGGGATCTATGCCAGAAGGA+AGG | 0.614167 | tig0023172:-58409 | Msa1405820:CDS |
| TCCTTGGAGAAAACTGCAAG+TGG | 0.617052 | tig0023172:-55711 | Msa1405820:CDS |
| ATGGACATATTATATGCTGA+GGG | 0.622333 | tig0023172:-56288 | Msa1405820:CDS |
| GCGCGAATATGGGCCAATGG+TGG | 0.623909 | tig0023172:-56682 | Msa1405820:CDS |
| TGTAATTCGATTCAGGGTCG+CGG | 0.626751 | tig0023172:+58612 | None:intergenic |
| AAGTTAGGAGTTCCTTCACA+TGG | 0.628090 | tig0023172:+57764 | None:intergenic |
| TCGAACATGTTCCATTAACA+AGG | 0.629726 | tig0023172:-55483 | Msa1405820:CDS |
| AGAGGTGAATTAGCTCAATG+AGG | 0.630007 | tig0023172:-55069 | Msa1405820:three_prime_UTR |
| ACCTTGGTATACTGCTGGAG+GGG | 0.631322 | tig0023172:-57055 | Msa1405820:CDS |
| TATAATGTACTCATCGTAGT+CGG | 0.631790 | tig0023172:+55639 | None:intergenic |
| GGAGGATTTGTGGAGAGATG+AGG | 0.636236 | tig0023172:-56661 | Msa1405820:CDS |
| ATGGATCATACCGCGAAGAG+GGG | 0.641577 | tig0023172:-57727 | Msa1405820:CDS |
| ATGAAAATTCCATTGATGTG+AGG | 0.646392 | tig0023172:+56247 | None:intergenic |
| GAGGGGCAAAAGAAAGATAG+GGG | 0.650210 | tig0023172:-57710 | Msa1405820:CDS |
| GATGACGAGGACTCATCAGA+AGG | 0.651956 | tig0023172:+56984 | None:intergenic |
| GCAATGGGATCTATGCCAGA+AGG | 0.652030 | tig0023172:-58413 | Msa1405820:CDS |
| GAATTGATGAGAATAAGAGA+AGG | 0.652584 | tig0023172:-58361 | Msa1405820:CDS |
| TATGCGCGAATATGGGCCAA+TGG | 0.657600 | tig0023172:-56685 | Msa1405820:CDS |
| CGACCGCCAACGTTCAACTG+GGG | 0.660405 | tig0023172:+57979 | None:intergenic |
| ATTTCCTAAGTCAAGCAGAG+AGG | 0.661953 | tig0023172:-56226 | Msa1405820:CDS |
| TGATGGATCATACCGCGAAG+AGG | 0.665695 | tig0023172:-57729 | Msa1405820:CDS |
| GGTATTGAATGATCAAGAGG+AGG | 0.670723 | tig0023172:+59019 | None:intergenic |
| GGGCTGATAATTTCACAAGG+TGG | 0.676747 | tig0023172:+58000 | None:intergenic |
| CCAGAAGGAAGGAAATGTGT+TGG | 0.680127 | tig0023172:-58398 | Msa1405820:CDS |
| GACGGAGAACAAAATAACAT+CGG | 0.680660 | tig0023172:+55669 | None:intergenic |
| AGCTCTTCGATATGGTAGAG+AGG | 0.683781 | tig0023172:-55263 | Msa1405820:CDS |
| ACATGTTAAGAATCCGTCTG+CGG | 0.688376 | tig0023172:-58642 | Msa1405820:CDS |
| AAGTTAACTTGAACAAGACG+AGG | 0.700700 | tig0023172:+58236 | None:intergenic |
| GCCCCTCCAGCAGTATACCA+AGG | 0.716032 | tig0023172:+57054 | None:intergenic |
| TTGTGATGAAGTTTACCAAG+TGG | 0.718761 | tig0023172:+58908 | None:intergenic |
| TTAACTTGAACAAGACGAGG+CGG | 0.723838 | tig0023172:+58239 | None:intergenic |
| TGGACATATTATATGCTGAG+GGG | 0.726727 | tig0023172:-56287 | Msa1405820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGCAAAATTAAATATTT+GGG | + | tig0023172:58951-58970 | None:intergenic | 10.0% |
| !! | TTAATGCAAAATTAAATATT+TGG | + | tig0023172:58952-58971 | None:intergenic | 10.0% |
| !! | TAAGTAGAATGAAAAATAAA+AGG | + | tig0023172:56108-56127 | None:intergenic | 15.0% |
| !! | ATGATTCTTTATACATTAAT+TGG | + | tig0023172:58816-58835 | None:intergenic | 15.0% |
| !! | AATGCAAAATTAAATATTTG+GGG | + | tig0023172:58950-58969 | None:intergenic | 15.0% |
| !! | ATTTATGCTTATCTAATCTA+AGG | - | tig0023172:57490-57509 | Msa1405820:intron | 20.0% |
| !!! | ACTGAAATTTTATTTCTACT+TGG | + | tig0023172:57839-57858 | None:intergenic | 20.0% |
| !!! | TTGCTAATAATGGAATAATT+TGG | - | tig0023172:57903-57922 | Msa1405820:CDS | 20.0% |
| !!! | TTTATCTATTGTTTTAGAGT+CGG | - | tig0023172:58139-58158 | Msa1405820:CDS | 20.0% |
| !! | AATTTCTTCTTCTTGAAATT+TGG | + | tig0023172:58412-58431 | None:intergenic | 20.0% |
| !!! | ATTTTGACCATAGTTTTAAT+AGG | - | tig0023172:58919-58938 | Msa1405820:CDS | 20.0% |
| ! | ATAAACAGTAGAATCTGAAA+TGG | + | tig0023172:55097-55116 | None:intergenic | 25.0% |
| ! | ACATGATGAGATTCTAAATT+TGG | + | tig0023172:55120-55139 | None:intergenic | 25.0% |
| !! | TCTTGTTATAAGTGTCTTAA+AGG | - | tig0023172:55450-55469 | Msa1405820:CDS | 25.0% |
| !! | CTTGTTATAAGTGTCTTAAA+GGG | - | tig0023172:55451-55470 | Msa1405820:CDS | 25.0% |
| ! | TATTGTTGATCAAGTTATGA+AGG | - | tig0023172:55665-55684 | Msa1405820:CDS | 25.0% |
| ! | GTTGTAATACTTGATTATAC+AGG | - | tig0023172:55925-55944 | Msa1405820:intron | 25.0% |
| ! | TAATACTTGATTATACAGGA+AGG | - | tig0023172:55929-55948 | Msa1405820:intron | 25.0% |
| !!! | CAATGTTACATTAGCTTTAT+TGG | + | tig0023172:56149-56168 | None:intergenic | 25.0% |
| ! | CAATAAAGCTAATGTAACAT+TGG | - | tig0023172:56147-56166 | Msa1405820:intron | 25.0% |
| ! | CAACTTGTATTCAAATACTA+CGG | + | tig0023172:56359-56378 | None:intergenic | 25.0% |
| ! | TCTAAGCTTGATTTATACAA+AGG | - | tig0023172:56391-56410 | Msa1405820:intron | 25.0% |
| ! | TCTAACAAATTTCTTTCTTC+AGG | - | tig0023172:56533-56552 | Msa1405820:intron | 25.0% |
| !! | TTAAGAGTCATAGATTTTGA+AGG | + | tig0023172:56600-56619 | None:intergenic | 25.0% |
| ! | CTTCAAAAATTTCTACTTGT+TGG | - | tig0023172:56666-56685 | Msa1405820:CDS | 25.0% |
| ! | AGCATGTACTATATTTAAAC+AGG | - | tig0023172:56704-56723 | Msa1405820:CDS | 25.0% |
| ! | TGTACTATATTTAAACAGGT+TGG | - | tig0023172:56708-56727 | Msa1405820:CDS | 25.0% |
| !!! | TATATTTAAACAGGTTGGTT+TGG | - | tig0023172:56713-56732 | Msa1405820:CDS | 25.0% |
| ! | TCTTTAATAACCCAAAATGA+AGG | + | tig0023172:56781-56800 | None:intergenic | 25.0% |
| !! | AAGATTGAATCTTTTGTCTT+AGG | - | tig0023172:56797-56816 | Msa1405820:CDS | 25.0% |
| !!! | AAGAGTATTTACTAGAGAAT+AGG | - | tig0023172:56940-56959 | Msa1405820:intron | 25.0% |
| ! | TCTATCAGCTAAATCAATAA+GGG | + | tig0023172:57068-57087 | None:intergenic | 25.0% |
| ! | TTCTATCAGCTAAATCAATA+AGG | + | tig0023172:57069-57088 | None:intergenic | 25.0% |
| ! | TTATTGTTATGTCATGAATG+TGG | - | tig0023172:57556-57575 | Msa1405820:intron | 25.0% |
| ! | CTAAATATCTATGTGAATGT+AGG | - | tig0023172:57607-57626 | Msa1405820:intron | 25.0% |
| ! | TATAATATGTCCATATCAGA+TGG | + | tig0023172:57662-57681 | None:intergenic | 25.0% |
| ! | CTTTCACTTTGAACAAAAAT+AGG | + | tig0023172:57882-57901 | None:intergenic | 25.0% |
| !!! | AAGTGAAAGTTTGCTAATAA+TGG | - | tig0023172:57893-57912 | Msa1405820:intron | 25.0% |
| ! | AAACGATTAATCATGAAGTA+CGG | + | tig0023172:58099-58118 | None:intergenic | 25.0% |
| !!! | TTATCTATTGTTTTAGAGTC+GGG | - | tig0023172:58140-58159 | Msa1405820:CDS | 25.0% |
| !! | TTGTGATTGTTACTTATAAC+CGG | + | tig0023172:58523-58542 | None:intergenic | 25.0% |
| ! | AGTAACAATCACAAAAAATG+TGG | - | tig0023172:58529-58548 | Msa1405820:CDS | 25.0% |
| ! | AGAAACAAATAGAGTTCTTT+CGG | + | tig0023172:58638-58657 | None:intergenic | 25.0% |
| !! | AAGAACTCTATTTGTTTCTT+TGG | - | tig0023172:58639-58658 | Msa1405820:CDS | 25.0% |
| ! | GACTTATCATTAACAATAGA+AGG | + | tig0023172:58742-58761 | None:intergenic | 25.0% |
| !!! | TCTTTTGCTGTTGTATACAA+TGG | - | tig0023172:54913-54932 | Msa1405820:three_prime_UTR | 30.0% |
| ATCTTGAAAGTAGGAATTTC+TGG | + | tig0023172:54961-54980 | None:intergenic | 30.0% | |
| ACTTGATCAATCTTGAAAGT+AGG | + | tig0023172:54970-54989 | None:intergenic | 30.0% | |
| ! | ATCAAAATACTCGTCACTTT+CGG | + | tig0023172:55379-55398 | None:intergenic | 30.0% |
| TATAAGTGTCTTAAAGGGAA+TGG | - | tig0023172:55456-55475 | Msa1405820:CDS | 30.0% | |
| GAATTGATGAGAATAAGAGA+AGG | - | tig0023172:55595-55614 | Msa1405820:CDS | 30.0% | |
| ATCAAGTTATGAAGGATGAA+AGG | - | tig0023172:55673-55692 | Msa1405820:CDS | 30.0% | |
| ATAAGCTCTTCTCTATTAAG+TGG | + | tig0023172:55750-55769 | None:intergenic | 30.0% | |
| ACTTAATAGAGAAGAGCTTA+TGG | - | tig0023172:55749-55768 | Msa1405820:intron | 30.0% | |
| TTAAGCTCTTATTCAACTAG+AGG | + | tig0023172:55883-55902 | None:intergenic | 30.0% | |
| TCAAGTATTACAACAGCATT+AGG | + | tig0023172:55919-55938 | None:intergenic | 30.0% | |
| ! | TTGTGATGCAACTTTTTGTT+TGG | - | tig0023172:56296-56315 | Msa1405820:CDS | 30.0% |
| ! | GTATCTGTTTTCTTTTGAAC+CGG | - | tig0023172:56501-56520 | Msa1405820:intron | 30.0% |
| ! | TATCTGTTTTCTTTTGAACC+GGG | - | tig0023172:56502-56521 | Msa1405820:intron | 30.0% |
| ! | AATGAAGGAGCATATATGAA+TGG | + | tig0023172:56766-56785 | None:intergenic | 30.0% |
| ! | TCATATATGCTCCTTCATTT+TGG | - | tig0023172:56767-56786 | Msa1405820:CDS | 30.0% |
| ! | CATATATGCTCCTTCATTTT+GGG | - | tig0023172:56768-56787 | Msa1405820:CDS | 30.0% |
| TGAGCTTCAAAATATCAAGT+TGG | - | tig0023172:56854-56873 | Msa1405820:intron | 30.0% | |
| !!! | CTGTCTTATTTGAACTTTTC+TGG | + | tig0023172:57041-57060 | None:intergenic | 30.0% |
| ! | TGTTGTATCAACATTTTCAC+CGG | + | tig0023172:57159-57178 | None:intergenic | 30.0% |
| TTACTCAAATGCATATTGTC+AGG | - | tig0023172:57221-57240 | Msa1405820:intron | 30.0% | |
| AGAAAATAGTTAGCACTTCT+CGG | + | tig0023172:57365-57384 | None:intergenic | 30.0% | |
| ! | TGCTAACTATTTTCTAGACA+GGG | - | tig0023172:57370-57389 | Msa1405820:CDS | 30.0% |
| TTGATATTCTTGAGCCAAAA+GGG | + | tig0023172:57426-57445 | None:intergenic | 30.0% | |
| TTTGATATTCTTGAGCCAAA+AGG | + | tig0023172:57427-57446 | None:intergenic | 30.0% | |
| AGATGGTTCATAATCTATCT+TGG | + | tig0023172:57645-57664 | None:intergenic | 30.0% | |
| AGATTATGAACCATCTGATA+TGG | - | tig0023172:57649-57668 | Msa1405820:intron | 30.0% | |
| TATGGACATATTATATGCTG+AGG | - | tig0023172:57667-57686 | Msa1405820:intron | 30.0% | |
| ATGGACATATTATATGCTGA+GGG | - | tig0023172:57668-57687 | Msa1405820:intron | 30.0% | |
| ATGAAAATTCCATTGATGTG+AGG | + | tig0023172:57712-57731 | None:intergenic | 30.0% | |
| GAAGAATCATGTTGATATTC+AGG | + | tig0023172:57767-57786 | None:intergenic | 30.0% | |
| CTAGTATCATCGAAAGTTTA+AGG | - | tig0023172:57959-57978 | Msa1405820:CDS | 30.0% | |
| TTATAGTAGCATAGTGCATA+GGG | + | tig0023172:58059-58078 | None:intergenic | 30.0% | |
| !! | TAATGAGTTGGTATCTGTTA+GGG | + | tig0023172:58210-58229 | None:intergenic | 30.0% |
| TATAATGTACTCATCGTAGT+CGG | + | tig0023172:58320-58339 | None:intergenic | 30.0% | |
| GAGTACATTATAGACAGTAA+AGG | - | tig0023172:58328-58347 | Msa1405820:CDS | 30.0% | |
| AGTTGCTACAAACAAAATGT+TGG | - | tig0023172:58351-58370 | Msa1405820:CDS | 30.0% | |
| ! | GAGCAATGATGTTTTCAAAT+AGG | + | tig0023172:58387-58406 | None:intergenic | 30.0% |
| CACAAAAAATGTGGTAACAA+TGG | - | tig0023172:58538-58557 | Msa1405820:CDS | 30.0% | |
| ! | CTATTTGTTTCTTTGGTTAC+TGG | - | tig0023172:58646-58665 | Msa1405820:CDS | 30.0% |
| AGGTTATTGAATGGGAAAAA+TGG | - | tig0023172:58713-58732 | Msa1405820:CDS | 30.0% | |
| GGTTATTGAATGGGAAAAAT+GGG | - | tig0023172:58714-58733 | Msa1405820:CDS | 30.0% | |
| AGTTCACATTTCACATATAG+AGG | - | tig0023172:58869-58888 | Msa1405820:CDS | 30.0% | |
| !!! | TTGACCATAGTTTTAATAGG+TGG | - | tig0023172:58922-58941 | Msa1405820:CDS | 30.0% |
| ! | TCTGGTATTGAATGATCAAG+AGG | + | tig0023172:54943-54962 | None:intergenic | 35.0% |
| TTACCAAGTGGTTGAATAAC+AGG | + | tig0023172:55039-55058 | None:intergenic | 35.0% | |
| TTGTGATGAAGTTTACCAAG+TGG | + | tig0023172:55051-55070 | None:intergenic | 35.0% | |
| ! | TGATGATGTTCCAACAAACT+CGG | - | tig0023172:55191-55210 | Msa1405820:CDS | 35.0% |
| TCTATTGTATCCGAGTTTGT+TGG | + | tig0023172:55204-55223 | None:intergenic | 35.0% | |
| AACTCGGATACAATAGAATC+AGG | - | tig0023172:55207-55226 | Msa1405820:CDS | 35.0% | |
| GTACCATGTAATTCGATTCA+GGG | + | tig0023172:55353-55372 | None:intergenic | 35.0% | |
| TGTACCATGTAATTCGATTC+AGG | + | tig0023172:55354-55373 | None:intergenic | 35.0% | |
| !!! | AGTGACGAGTATTTTGATAG+TGG | - | tig0023172:55381-55400 | Msa1405820:CDS | 35.0% |
| !! | CTAATTGCATGTGGCTTTAA+TGG | + | tig0023172:55414-55433 | None:intergenic | 35.0% |
| CAATTAGACCAGGAAAGAAA+GGG | - | tig0023172:55427-55446 | Msa1405820:CDS | 35.0% | |
| GAATGGTTTAACTGAGAAAG+AGG | - | tig0023172:55473-55492 | Msa1405820:CDS | 35.0% | |
| AAACTGTGTGATAAGAGCAA+TGG | - | tig0023172:55527-55546 | Msa1405820:CDS | 35.0% | |
| AACTGTGTGATAAGAGCAAT+GGG | - | tig0023172:55528-55547 | Msa1405820:CDS | 35.0% | |
| GAGAATAAGAGAAGGAATCT+TGG | - | tig0023172:55603-55622 | Msa1405820:CDS | 35.0% | |
| GGAATCTTGGAAAATGTTCT+AGG | - | tig0023172:55616-55635 | Msa1405820:CDS | 35.0% | |
| ! | AAGTTAACTTGAACAAGACG+AGG | + | tig0023172:55723-55742 | None:intergenic | 35.0% |
| AGCTTAAACCAGGATCTTAT+TGG | - | tig0023172:55802-55821 | Msa1405820:intron | 35.0% | |
| TTGTCATACCAATAAGATCC+TGG | + | tig0023172:55813-55832 | None:intergenic | 35.0% | |
| TATTGGTATGACAAAGCTTC+TGG | - | tig0023172:55819-55838 | Msa1405820:intron | 35.0% | |
| ! | ATGACAAAGCTTCTGGATTT+TGG | - | tig0023172:55826-55845 | Msa1405820:intron | 35.0% |
| ! | TGACAAAGCTTCTGGATTTT+GGG | - | tig0023172:55827-55846 | Msa1405820:intron | 35.0% |
| TGTAATCTCGCGATCATTTA+TGG | + | tig0023172:56041-56060 | None:intergenic | 35.0% | |
| AAAAGAGCTGTTCGTACTAA+AGG | - | tig0023172:56063-56082 | Msa1405820:intron | 35.0% | |
| ! | TAACATTGGTTGTTTGCAGA+TGG | - | tig0023172:56161-56180 | Msa1405820:intron | 35.0% |
| ! | TGAAGGAACTCCTAACTTTT+GGG | - | tig0023172:56197-56216 | Msa1405820:CDS | 35.0% |
| GAAGACACGATATTTCATCA+CGG | + | tig0023172:56465-56484 | None:intergenic | 35.0% | |
| ! | ATCTGTTTTCTTTTGAACCG+GGG | - | tig0023172:56503-56522 | Msa1405820:intron | 35.0% |
| !! | GTCATAGATTTTGAAGGAAC+CGG | + | tig0023172:56594-56613 | None:intergenic | 35.0% |
| TCTATGACTCTTAACGATGA+AGG | - | tig0023172:56606-56625 | Msa1405820:CDS | 35.0% | |
| ! | TTTGAAGTGTCTTCTGATGA+AGG | + | tig0023172:56653-56672 | None:intergenic | 35.0% |
| ! | CTTGTTGGTTGTGTAAATTC+TGG | - | tig0023172:56681-56700 | Msa1405820:CDS | 35.0% |
| ! | TGAAGCTCATTTTCAGAGAA+AGG | + | tig0023172:56843-56862 | None:intergenic | 35.0% |
| GATACAACACCCTATTCAAT+TGG | - | tig0023172:57170-57189 | Msa1405820:intron | 35.0% | |
| AGTCTTGGACCAATTGAATA+GGG | + | tig0023172:57182-57201 | None:intergenic | 35.0% | |
| ATGCATATTGTCAGGTAACA+TGG | - | tig0023172:57229-57248 | Msa1405820:intron | 35.0% | |
| ! | GTGCTAACTATTTTCTAGAC+AGG | - | tig0023172:57369-57388 | Msa1405820:CDS | 35.0% |
| ! | TCAGATCATTGATACCCTTT+TGG | - | tig0023172:57409-57428 | Msa1405820:intron | 35.0% |
| TGGACATATTATATGCTGAG+GGG | - | tig0023172:57669-57688 | Msa1405820:intron | 35.0% | |
| ATCAACATGATTCTTCTCTC+AGG | - | tig0023172:57771-57790 | Msa1405820:CDS | 35.0% | |
| AACTTTCGATGATACTAGCA+AGG | + | tig0023172:57957-57976 | None:intergenic | 35.0% | |
| CAACTCGAGTTTAAGTACTA+TGG | - | tig0023172:57993-58012 | Msa1405820:CDS | 35.0% | |
| !! | AGGGGTACTACTATATAAAC+TGG | + | tig0023172:58020-58039 | None:intergenic | 35.0% |
| CTTATAGTAGCATAGTGCAT+AGG | + | tig0023172:58060-58079 | None:intergenic | 35.0% | |
| GCACTATGCTACTATAAGTT+AGG | - | tig0023172:58062-58081 | Msa1405820:intron | 35.0% | |
| !!! | GGTAAGAAAGCTTTTAGAAC+AGG | + | tig0023172:58169-58188 | None:intergenic | 35.0% |
| CTGTTAGGGAACATAAAGTA+GGG | + | tig0023172:58196-58215 | None:intergenic | 35.0% | |
| TCTGTTAGGGAACATAAAGT+AGG | + | tig0023172:58197-58216 | None:intergenic | 35.0% | |
| !! | CTAATGAGTTGGTATCTGTT+AGG | + | tig0023172:58211-58230 | None:intergenic | 35.0% |
| TTGGATGTACTCTAATGAGT+TGG | + | tig0023172:58222-58241 | None:intergenic | 35.0% | |
| AGAGTACATCCAAAAATCCT+TGG | - | tig0023172:58229-58248 | Msa1405820:CDS | 35.0% | |
| ! | CAGTTTTCTCCAAGGATTTT+TGG | + | tig0023172:58241-58260 | None:intergenic | 35.0% |
| GACGGAGAACAAAATAACAT+CGG | + | tig0023172:58290-58309 | None:intergenic | 35.0% | |
| TTCCTCAAGAAGATCGAATT+TGG | + | tig0023172:58449-58468 | None:intergenic | 35.0% | |
| TCGAACATGTTCCATTAACA+AGG | - | tig0023172:58473-58492 | Msa1405820:CDS | 35.0% | |
| !!! | CTGGTTTTGTGAATTCAATC+CGG | - | tig0023172:58501-58520 | Msa1405820:CDS | 35.0% |
| ! | AAAGCACTTTGAGCTAATGA+AGG | + | tig0023172:58571-58590 | None:intergenic | 35.0% |
| ATGGTAGAGAGGTTATTGAA+TGG | - | tig0023172:58704-58723 | Msa1405820:CDS | 35.0% | |
| TGGTAGAGAGGTTATTGAAT+GGG | - | tig0023172:58705-58724 | Msa1405820:CDS | 35.0% | |
| GAGATTACTTCAACAACCAA+TGG | - | tig0023172:58763-58782 | Msa1405820:CDS | 35.0% | |
| GGTTCCACCTATTAAAACTA+TGG | + | tig0023172:58929-58948 | None:intergenic | 35.0% | |
| ! | GGTATTGAATGATCAAGAGG+AGG | + | tig0023172:54940-54959 | None:intergenic | 40.0% |
| GAAGAAGCTATAGATGCAAC+AGG | + | tig0023172:54994-55013 | None:intergenic | 40.0% | |
| GTACCTGTTATTCAACCACT+TGG | - | tig0023172:55033-55052 | Msa1405820:three_prime_UTR | 40.0% | |
| GATACAATAGAATCAGGCTC+AGG | - | tig0023172:55213-55232 | Msa1405820:CDS | 40.0% | |
| ACATGTTAAGAATCCGTCTG+CGG | - | tig0023172:55314-55333 | Msa1405820:CDS | 40.0% | |
| TTTCCTGGTCTAATTGCATG+TGG | + | tig0023172:55423-55442 | None:intergenic | 40.0% | |
| GCAATTAGACCAGGAAAGAA+AGG | - | tig0023172:55426-55445 | Msa1405820:CDS | 40.0% | |
| TAACAAGACCCTTTCTTTCC+TGG | + | tig0023172:55438-55457 | None:intergenic | 40.0% | |
| !! | AGGAAATGTGTTGGTTGCAT+TGG | - | tig0023172:55567-55586 | Msa1405820:CDS | 40.0% |
| !! | TGTGTTGGTTGCATTGGTTA+TGG | - | tig0023172:55573-55592 | Msa1405820:CDS | 40.0% |
| ! | TTAACTTGAACAAGACGAGG+CGG | + | tig0023172:55720-55739 | None:intergenic | 40.0% |
| GATCCTGGTTTAAGCTCTTT+AGG | + | tig0023172:55798-55817 | None:intergenic | 40.0% | |
| ! | GACAAAGCTTCTGGATTTTG+GGG | - | tig0023172:55828-55847 | Msa1405820:intron | 40.0% |
| AAGTTAGGAGTTCCTTCACA+TGG | + | tig0023172:56195-56214 | None:intergenic | 40.0% | |
| ! | GTGAAGGAACTCCTAACTTT+TGG | - | tig0023172:56196-56215 | Msa1405820:CDS | 40.0% |
| TCAGGATTCACCCAAAAGTT+AGG | + | tig0023172:56210-56229 | None:intergenic | 40.0% | |
| !! | AACTTTTGGGTGAATCCTGA+TGG | - | tig0023172:56210-56229 | Msa1405820:CDS | 40.0% |
| AAGAGGGGCAAAAGAAAGAT+AGG | - | tig0023172:56244-56263 | Msa1405820:CDS | 40.0% | |
| AGAGGGGCAAAAGAAAGATA+GGG | - | tig0023172:56245-56264 | Msa1405820:CDS | 40.0% | |
| AGAAAGATAGGGGATGCATA+TGG | - | tig0023172:56256-56275 | Msa1405820:CDS | 40.0% | |
| GAAAGATAGGGGATGCATAT+GGG | - | tig0023172:56257-56276 | Msa1405820:CDS | 40.0% | |
| AAAGATAGGGGATGCATATG+GGG | - | tig0023172:56258-56277 | Msa1405820:CDS | 40.0% | |
| CGATATTTCATCACGGAGTT+TGG | + | tig0023172:56458-56477 | None:intergenic | 40.0% | |
| ! | TCTGTTTTCTTTTGAACCGG+GGG | - | tig0023172:56504-56523 | Msa1405820:intron | 40.0% |
| !! | AGGAGCATTATACAACAGCT+TGG | + | tig0023172:56823-56842 | None:intergenic | 40.0% |
| GTATACCAAGGTAGGTAAAC+AGG | + | tig0023172:56893-56912 | None:intergenic | 40.0% | |
| AAAAAGCTTACCAGATGACG+AGG | + | tig0023172:56988-57007 | None:intergenic | 40.0% | |
| AAGCACTTGTGAGTTCGTAT+AGG | + | tig0023172:57015-57034 | None:intergenic | 40.0% | |
| CAGTCTTGGACCAATTGAAT+AGG | + | tig0023172:57183-57202 | None:intergenic | 40.0% | |
| TCTGAGAAACTCTTCAGTCT+TGG | + | tig0023172:57197-57216 | None:intergenic | 40.0% | |
| GACTGAAGAGTTTCTCAGAT+TGG | - | tig0023172:57198-57217 | Msa1405820:intron | 40.0% | |
| CAAGTTTACTGTGTCAACAG+TGG | - | tig0023172:57515-57534 | Msa1405820:intron | 40.0% | |
| TGTTATGTCATGAATGTGGC+AGG | - | tig0023172:57560-57579 | Msa1405820:intron | 40.0% | |
| GTGGCAGGTGTATAAAATCA+AGG | - | tig0023172:57575-57594 | Msa1405820:intron | 40.0% | |
| ATTTCCTAAGTCAAGCAGAG+AGG | - | tig0023172:57730-57749 | Msa1405820:CDS | 40.0% | |
| ! | TGGCAAAAGTTGTTTCAGAG+AGG | - | tig0023172:57923-57942 | Msa1405820:CDS | 40.0% |
| GGGAACATAAAGTAGGGTTA+GGG | + | tig0023172:58190-58209 | None:intergenic | 40.0% | |
| AGGGAACATAAAGTAGGGTT+AGG | + | tig0023172:58191-58210 | None:intergenic | 40.0% | |
| CACCAAATTCGATCTTCTTG+AGG | - | tig0023172:58444-58463 | Msa1405820:CDS | 40.0% | |
| TTCCATTAACAAGGTGTGAC+TGG | - | tig0023172:58482-58501 | Msa1405820:CDS | 40.0% | |
| AACCAGTCACACCTTGTTAA+TGG | + | tig0023172:58487-58506 | None:intergenic | 40.0% | |
| ATCGATGAAGCTCTTCGATA+TGG | - | tig0023172:58685-58704 | Msa1405820:CDS | 40.0% | |
| ! | TGAAGTACTTGCATCTCCAT+TGG | + | tig0023172:58782-58801 | None:intergenic | 40.0% |
| AGAGGTGAATTAGCTCAATG+AGG | - | tig0023172:58887-58906 | Msa1405820:CDS | 40.0% | |
| GAGGTGAATTAGCTCAATGA+GGG | - | tig0023172:58888-58907 | Msa1405820:CDS | 40.0% | |
| TGTAATTCGATTCAGGGTCG+CGG | + | tig0023172:55347-55366 | None:intergenic | 45.0% | |
| CGACCCTGAATCGAATTACA+TGG | - | tig0023172:55347-55366 | Msa1405820:CDS | 45.0% | |
| AAGCCACATGCAATTAGACC+AGG | - | tig0023172:55417-55436 | Msa1405820:CDS | 45.0% | |
| CCAACACATTTCCTTCCTTC+TGG | + | tig0023172:55561-55580 | None:intergenic | 45.0% | |
| CCAGAAGGAAGGAAATGTGT+TGG | - | tig0023172:55558-55577 | Msa1405820:CDS | 45.0% | |
| CCTGGTTTAAGCTCTTTAGG+TGG | + | tig0023172:55795-55814 | None:intergenic | 45.0% | |
| CCACCTAAAGAGCTTAAACC+AGG | - | tig0023172:55792-55811 | Msa1405820:intron | 45.0% | |
| !! | AGCTTCTGGATTTTGGGGAA+AGG | - | tig0023172:55833-55852 | Msa1405820:intron | 45.0% |
| GGGCTGATAATTTCACAAGG+TGG | + | tig0023172:55959-55978 | None:intergenic | 45.0% | |
| TGGGGGCTGATAATTTCACA+AGG | + | tig0023172:55962-55981 | None:intergenic | 45.0% | |
| TTGCAGAGAAACGCAAGCAA+TGG | - | tig0023172:56001-56020 | Msa1405820:intron | 45.0% | |
| GAGGGGCAAAAGAAAGATAG+GGG | - | tig0023172:56246-56265 | Msa1405820:CDS | 45.0% | |
| ! | ATTTGTTAGAACAGCACCCC+CGG | + | tig0023172:56523-56542 | None:intergenic | 45.0% |
| CTTTCTTCAGGCTCAAACGA+AGG | - | tig0023172:56545-56564 | Msa1405820:intron | 45.0% | |
| ! | TTGTGCTATTCTGTCACTGC+CGG | - | tig0023172:56572-56591 | Msa1405820:intron | 45.0% |
| AGTGTCTTCTGATGAAGGCT+TGG | + | tig0023172:56648-56667 | None:intergenic | 45.0% | |
| GGAGCATATATGAATGGACG+AGG | + | tig0023172:56760-56779 | None:intergenic | 45.0% | |
| AGCAACCTGTTTACCTACCT+TGG | - | tig0023172:56885-56904 | Msa1405820:intron | 45.0% | |
| TACCTACCTTGGTATACTGC+TGG | - | tig0023172:56896-56915 | Msa1405820:intron | 45.0% | |
| TACCTTGGTATACTGCTGGA+GGG | - | tig0023172:56900-56919 | Msa1405820:intron | 45.0% | |
| ! | TAGTGTATGACTTGTGCAGC+AGG | - | tig0023172:57128-57147 | Msa1405820:CDS | 45.0% |
| ! | AGTGTATGACTTGTGCAGCA+GGG | - | tig0023172:57129-57148 | Msa1405820:CDS | 45.0% |
| ATCCAACAGCCTCACATCAA+TGG | - | tig0023172:57700-57719 | Msa1405820:CDS | 45.0% | |
| TTCCATTGATGTGAGGCTGT+TGG | + | tig0023172:57705-57724 | None:intergenic | 45.0% | |
| AGTAGCATAGTGCATAGGGA+AGG | + | tig0023172:58055-58074 | None:intergenic | 45.0% | |
| TCCTTGGAGAAAACTGCAAG+TGG | - | tig0023172:58245-58264 | Msa1405820:CDS | 45.0% | |
| ! | ACCACTTGCAGTTTTCTCCA+AGG | + | tig0023172:58249-58268 | None:intergenic | 45.0% |
| TGGAGAAAACTGCAAGTGGT+TGG | - | tig0023172:58249-58268 | Msa1405820:CDS | 45.0% | |
| ATCGTAGTCGGTTAAGGAGA+CGG | + | tig0023172:58308-58327 | None:intergenic | 45.0% | |
| GTACTCATCGTAGTCGGTTA+AGG | + | tig0023172:58314-58333 | None:intergenic | 45.0% | |
| AGAGCTTCATCGATCGTATC+AGG | + | tig0023172:58679-58698 | None:intergenic | 45.0% | |
| AGCTCTTCGATATGGTAGAG+AGG | - | tig0023172:58693-58712 | Msa1405820:CDS | 45.0% | |
| !!! | TCGCGTTCGGGTTTTAGTTC+TGG | - | tig0023172:55237-55256 | Msa1405820:CDS | 50.0% |
| GCAATGGGATCTATGCCAGA+AGG | - | tig0023172:55543-55562 | Msa1405820:CDS | 50.0% | |
| TGGGATCTATGCCAGAAGGA+AGG | - | tig0023172:55547-55566 | Msa1405820:CDS | 50.0% | |
| !! | ATGGCAAGAGTGCCATGTGA+AGG | - | tig0023172:56180-56199 | Msa1405820:intron | 50.0% |
| TCTTCGCGGTATGATCCATC+AGG | + | tig0023172:56228-56247 | None:intergenic | 50.0% | |
| ! | TGATGGATCATACCGCGAAG+AGG | - | tig0023172:56227-56246 | Msa1405820:CDS | 50.0% |
| GATGGATCATACCGCGAAGA+GGG | - | tig0023172:56228-56247 | Msa1405820:CDS | 50.0% | |
| ATGGATCATACCGCGAAGAG+GGG | - | tig0023172:56229-56248 | Msa1405820:CDS | 50.0% | |
| ! | CTTTCTTTTGCCCCTCTTCG+CGG | + | tig0023172:56242-56261 | None:intergenic | 50.0% |
| GTAGGAGACGTAGGCACAAT+TGG | - | tig0023172:56432-56451 | Msa1405820:intron | 50.0% | |
| CTCCAGCAGTATACCAAGGT+AGG | + | tig0023172:56901-56920 | None:intergenic | 50.0% | |
| CTACCTTGGTATACTGCTGG+AGG | - | tig0023172:56899-56918 | Msa1405820:intron | 50.0% | |
| ACCTTGGTATACTGCTGGAG+GGG | - | tig0023172:56901-56920 | Msa1405820:intron | 50.0% | |
| GATGACGAGGACTCATCAGA+AGG | + | tig0023172:56975-56994 | None:intergenic | 50.0% | |
| TCTGATGAGTCCTCGTCATC+TGG | - | tig0023172:56975-56994 | Msa1405820:intron | 50.0% | |
| ACTTGTGCAGCAGGGAATTC+CGG | - | tig0023172:57137-57156 | Msa1405820:CDS | 50.0% | |
| CAGCTGCTATGCGCGAATAT+GGG | - | tig0023172:57264-57283 | Msa1405820:CDS | 50.0% | |
| TATGCGCGAATATGGGCCAA+TGG | - | tig0023172:57271-57290 | Msa1405820:CDS | 50.0% | |
| CTCCACAAATCCTCCACCAT+TGG | + | tig0023172:57290-57309 | None:intergenic | 50.0% | |
| GGAGGATTTGTGGAGAGATG+AGG | - | tig0023172:57295-57314 | Msa1405820:CDS | 50.0% | |
| CGATTCAGGCGACATACAAC+AGG | - | tig0023172:57318-57337 | Msa1405820:CDS | 50.0% | |
| GACTCCTCTCTGCTTGACTT+AGG | + | tig0023172:57737-57756 | None:intergenic | 50.0% | |
| ATCAGGCTCAGGTTCGCGTT+CGG | - | tig0023172:55224-55243 | Msa1405820:CDS | 55.0% | |
| TCGCGGAATGTAACCGCAGA+CGG | + | tig0023172:55330-55349 | None:intergenic | 55.0% | |
| ATCAGCCCCCAGTTGAACGT+TGG | - | tig0023172:55971-55990 | Msa1405820:intron | 55.0% | |
| TAGGGGATGCATATGGGGCA+AGG | - | tig0023172:56263-56282 | Msa1405820:CDS | 55.0% | |
| CTACGTCTCCTACTGCAGAG+CGG | + | tig0023172:56425-56444 | None:intergenic | 55.0% | |
| CCATATTCGCGCATAGCAGC+TGG | + | tig0023172:57266-57285 | None:intergenic | 55.0% | |
| CCAGCTGCTATGCGCGAATA+TGG | - | tig0023172:57263-57282 | Msa1405820:CDS | 55.0% | |
| CGAATATGGGCCAATGGTGG+AGG | - | tig0023172:57277-57296 | Msa1405820:CDS | 55.0% | |
| ! | GGCCAATGGTGGAGGATTTG+TGG | - | tig0023172:57285-57304 | Msa1405820:CDS | 55.0% |
| GTGGAGAGATGAGGCGATTC+AGG | - | tig0023172:57304-57323 | Msa1405820:CDS | 55.0% | |
| TCAGGCTCAGGTTCGCGTTC+GGG | - | tig0023172:55225-55244 | Msa1405820:CDS | 60.0% | |
| AGCCCCCAGTTGAACGTTGG+CGG | - | tig0023172:55974-55993 | Msa1405820:intron | 60.0% | |
| GACCGCCAACGTTCAACTGG+GGG | + | tig0023172:55979-55998 | None:intergenic | 60.0% | |
| CGACCGCCAACGTTCAACTG+GGG | + | tig0023172:55980-55999 | None:intergenic | 60.0% | |
| GCGACCGCCAACGTTCAACT+GGG | + | tig0023172:55981-56000 | None:intergenic | 60.0% | |
| AGCGACCGCCAACGTTCAAC+TGG | + | tig0023172:55982-56001 | None:intergenic | 60.0% | |
| CACTGTAGCCGCTCTGCAGT+AGG | - | tig0023172:56414-56433 | Msa1405820:intron | 60.0% | |
| CGCTCTGCAGTAGGAGACGT+AGG | - | tig0023172:56423-56442 | Msa1405820:intron | 60.0% | |
| GCCCCTCCAGCAGTATACCA+AGG | + | tig0023172:56905-56924 | None:intergenic | 60.0% | |
| GCGCGAATATGGGCCAATGG+TGG | - | tig0023172:57274-57293 | Msa1405820:CDS | 60.0% | |
| GGAAGGTCGCTCGAGTACAG+GGG | + | tig0023172:58038-58057 | None:intergenic | 60.0% | |
| GGGAAGGTCGCTCGAGTACA+GGG | + | tig0023172:58039-58058 | None:intergenic | 60.0% | |
| AGGGAAGGTCGCTCGAGTAC+AGG | + | tig0023172:58040-58059 | None:intergenic | 60.0% | |
| ! | TATACTGCTGGAGGGGCGCG+AGG | - | tig0023172:56908-56927 | Msa1405820:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023172 | gene | 54874 | 59104 | 54874 | ID=Msa1405820;Name=Msa1405820 |
| tig0023172 | mRNA | 54874 | 59104 | 54874 | ID=Msa1405820-mRNA-1;Parent=Msa1405820;Name=Msa1405820-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.87|1|1|1|8|300|856 |
| tig0023172 | exon | 54874 | 55762 | 54874 | ID=Msa1405820-mRNA-1:exon:24273;Parent=Msa1405820-mRNA-1 |
| tig0023172 | exon | 56186 | 56349 | 56186 | ID=Msa1405820-mRNA-1:exon:24272;Parent=Msa1405820-mRNA-1 |
| tig0023172 | exon | 56587 | 56831 | 56587 | ID=Msa1405820-mRNA-1:exon:24271;Parent=Msa1405820-mRNA-1 |
| tig0023172 | exon | 56982 | 57159 | 56982 | ID=Msa1405820-mRNA-1:exon:24270;Parent=Msa1405820-mRNA-1 |
| tig0023172 | exon | 57253 | 57423 | 57253 | ID=Msa1405820-mRNA-1:exon:24269;Parent=Msa1405820-mRNA-1 |
| tig0023172 | exon | 57694 | 57798 | 57694 | ID=Msa1405820-mRNA-1:exon:24268;Parent=Msa1405820-mRNA-1 |
| tig0023172 | exon | 57894 | 58031 | 57894 | ID=Msa1405820-mRNA-1:exon:24267;Parent=Msa1405820-mRNA-1 |
| tig0023172 | exon | 58124 | 59104 | 58124 | ID=Msa1405820-mRNA-1:exon:24266;Parent=Msa1405820-mRNA-1 |
| tig0023172 | CDS | 58124 | 59104 | 58124 | ID=Msa1405820-mRNA-1:cds;Parent=Msa1405820-mRNA-1 |
| tig0023172 | CDS | 57894 | 58031 | 57894 | ID=Msa1405820-mRNA-1:cds;Parent=Msa1405820-mRNA-1 |
| tig0023172 | CDS | 57694 | 57798 | 57694 | ID=Msa1405820-mRNA-1:cds;Parent=Msa1405820-mRNA-1 |
| tig0023172 | CDS | 57253 | 57423 | 57253 | ID=Msa1405820-mRNA-1:cds;Parent=Msa1405820-mRNA-1 |
| tig0023172 | CDS | 56982 | 57159 | 56982 | ID=Msa1405820-mRNA-1:cds;Parent=Msa1405820-mRNA-1 |
| tig0023172 | CDS | 56587 | 56831 | 56587 | ID=Msa1405820-mRNA-1:cds;Parent=Msa1405820-mRNA-1 |
| tig0023172 | CDS | 56186 | 56349 | 56186 | ID=Msa1405820-mRNA-1:cds;Parent=Msa1405820-mRNA-1 |
| tig0023172 | CDS | 55174 | 55762 | 55174 | ID=Msa1405820-mRNA-1:cds;Parent=Msa1405820-mRNA-1 |
| tig0023172 | three_prime_UTR | 54874 | 55173 | 54874 | ID=Msa1405820-mRNA-1:three_prime_utr;Parent=Msa1405820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
