Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473140 | XP_013461490.1 | 94.719 | 871 | 45 | 1 | 1 | 870 | 1 | 871 | 0.0 | 1685 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473140 | sp|Q9FHK4|EDR4_ARATH | 47.826 | 92 | 43 | 1 | 635 | 721 | 461 | 552 | 3.43e-20 | 99.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473140 | A0A072VBG6 | 94.719 | 871 | 45 | 1 | 1 | 870 | 1 | 871 | 0.0 | 1685 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa0473140 | 0.866084 | 3.692234e-65 | -8.615850e-47 |
| Msa0011050 | Msa0473140 | 0.814141 | 1.791597e-51 | -8.615850e-47 |
| Msa0013280 | Msa0473140 | 0.847185 | 1.357013e-59 | -8.615850e-47 |
| Msa0048390 | Msa0473140 | 0.806182 | 9.312475e-50 | -8.615850e-47 |
| Msa0062180 | Msa0473140 | 0.820815 | 5.620448e-53 | -8.615850e-47 |
| Msa0064140 | Msa0473140 | 0.826947 | 2.050569e-54 | -8.615850e-47 |
| Msa0086560 | Msa0473140 | 0.813394 | 2.616782e-51 | -8.615850e-47 |
| Msa0106530 | Msa0473140 | 0.866881 | 2.061498e-65 | -8.615850e-47 |
| Msa0119440 | Msa0473140 | 0.811417 | 7.074281e-51 | -8.615850e-47 |
| Msa0136630 | Msa0473140 | 0.801889 | 7.276702e-49 | -8.615850e-47 |
| Msa0151220 | Msa0473140 | 0.819774 | 9.731892e-53 | -8.615850e-47 |
| Msa0155210 | Msa0473140 | 0.820247 | 7.588674e-53 | -8.615850e-47 |
| Msa0162690 | Msa0473140 | 0.823760 | 1.164363e-53 | -8.615850e-47 |
| Msa0187310 | Msa0473140 | 0.829399 | 5.260500e-55 | -8.615850e-47 |
| Msa0201570 | Msa0473140 | 0.823504 | 1.336387e-53 | -8.615850e-47 |
| Msa0224130 | Msa0473140 | 0.806603 | 7.590807e-50 | -8.615850e-47 |
| Msa0364790 | Msa0473140 | 0.821680 | 3.549275e-53 | -8.615850e-47 |
| Msa0377840 | Msa0473140 | 0.976601 | 3.876559e-142 | -8.615850e-47 |
| Msa0380600 | Msa0473140 | 0.805753 | 1.146170e-49 | -8.615850e-47 |
| Msa0408340 | Msa0473140 | 0.822245 | 2.626600e-53 | -8.615850e-47 |
| Msa0426560 | Msa0473140 | 0.970636 | 6.409988e-132 | -8.615850e-47 |
| Msa0473140 | Msa0484800 | 0.812191 | 4.800516e-51 | -8.615850e-47 |
| Msa0473140 | Msa0501410 | 0.808512 | 2.986231e-50 | -8.615850e-47 |
| Msa0473140 | Msa0517610 | 0.961704 | 5.186569e-120 | -8.615850e-47 |
| Msa0473140 | Msa0524330 | 0.848743 | 5.044235e-60 | -8.615850e-47 |
| Msa0473140 | Msa0524440 | 0.867436 | 1.370414e-65 | -8.615850e-47 |
| Msa0473140 | Msa0542530 | 0.806149 | 9.466148e-50 | -8.615850e-47 |
| Msa0473140 | Msa0558390 | 0.809925 | 1.486736e-50 | -8.615850e-47 |
| Msa0473140 | Msa0572560 | 0.828387 | 9.247684e-55 | -8.615850e-47 |
| Msa0473140 | Msa0574600 | 0.811099 | 8.293492e-51 | -8.615850e-47 |
| Msa0473140 | Msa0580920 | 0.800756 | 1.241214e-48 | -8.615850e-47 |
| Msa0473140 | Msa0588710 | 0.814256 | 1.690085e-51 | -8.615850e-47 |
| Msa0473140 | Msa0697570 | 0.804065 | 2.583305e-49 | -8.615850e-47 |
| Msa0473140 | Msa0697590 | 0.804326 | 2.279863e-49 | -8.615850e-47 |
| Msa0473140 | Msa0708310 | 0.807515 | 4.867192e-50 | -8.615850e-47 |
| Msa0473140 | Msa0775920 | 0.802643 | 5.090049e-49 | -8.615850e-47 |
| Msa0473140 | Msa0807670 | 0.803284 | 3.752338e-49 | -8.615850e-47 |
| Msa0473140 | Msa0860250 | 0.816835 | 4.505929e-52 | -8.615850e-47 |
| Msa0473140 | Msa0968050 | 0.846814 | 1.714042e-59 | -8.615850e-47 |
| Msa0473140 | Msa1043120 | 0.836451 | 9.286562e-57 | -8.615850e-47 |
| Msa0473140 | Msa1089190 | 0.808990 | 2.360255e-50 | -8.615850e-47 |
| Msa0473140 | Msa1109670 | 0.808598 | 2.862181e-50 | -8.615850e-47 |
| Msa0473140 | Msa1214170 | 0.813227 | 2.847792e-51 | -8.615850e-47 |
| Msa0473140 | Msa1238690 | 0.816441 | 5.522423e-52 | -8.615850e-47 |
| Msa0473140 | Msa1260680 | 0.833306 | 5.751268e-56 | -8.615850e-47 |
| Msa0473140 | Msa1280150 | 0.818027 | 2.428879e-52 | -8.615850e-47 |
| Msa0473140 | Msa1285200 | 0.810316 | 1.224981e-50 | -8.615850e-47 |
| Msa0473140 | Msa1353890 | 0.815082 | 1.108972e-51 | -8.615850e-47 |
| Msa0473140 | Msa1360020 | 0.812424 | 4.269227e-51 | -8.615850e-47 |
| Msa0473140 | Msa1363810 | 0.813775 | 2.158325e-51 | -8.615850e-47 |
| Msa0473140 | Msa1364080 | 0.811897 | 5.563195e-51 | -8.615850e-47 |
| Msa0473140 | Msa1367530 | 0.865724 | 4.799096e-65 | -8.615850e-47 |
| Msa0473140 | Msa1389760 | 0.802573 | 5.261791e-49 | -8.615850e-47 |
| Msa0473140 | Msa1405820 | 0.839444 | 1.578788e-57 | -8.615850e-47 |
| Msa0473140 | Msa1408180 | 0.809344 | 1.982080e-50 | -8.615850e-47 |
| Msa0473140 | Msa1420920 | 0.800731 | 1.255993e-48 | -8.615850e-47 |
| Msa0473140 | Msa1424580 | 0.832969 | 6.978884e-56 | -8.615850e-47 |
| Msa0473140 | Msa1424630 | 0.817705 | 2.871576e-52 | -8.615850e-47 |
| Msa0473140 | Msa1430550 | 0.803703 | 3.071003e-49 | -8.615850e-47 |
| Msa0473140 | Msa1448980 | 0.808262 | 3.375991e-50 | -8.615850e-47 |
| Msa0259440 | Msa0473140 | 0.814106 | 1.823772e-51 | -8.615850e-47 |
| Msa0259580 | Msa0473140 | 0.807985 | 3.868636e-50 | -8.615850e-47 |
| Msa0260530 | Msa0473140 | 0.808087 | 3.679177e-50 | -8.615850e-47 |
| Msa0265270 | Msa0473140 | 0.802222 | 6.214400e-49 | -8.615850e-47 |
| Msa0277410 | Msa0473140 | 0.809144 | 2.188026e-50 | -8.615850e-47 |
| Msa0282720 | Msa0473140 | 0.803481 | 3.414568e-49 | -8.615850e-47 |
| Msa0305620 | Msa0473140 | 0.806627 | 7.503386e-50 | -8.615850e-47 |
| Msa0314000 | Msa0473140 | 0.805522 | 1.281697e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473140 | MtrunA17_Chr3g0128631 | 94.719 | 871 | 45 | 1 | 1 | 870 | 1 | 871 | 0.0 | 1685 |
| Msa0473140 | MtrunA17_Chr5g0428461 | 36.491 | 855 | 373 | 31 | 72 | 868 | 197 | 939 | 1.10e-126 | 404 |
| Msa0473140 | MtrunA17_Chr7g0268371 | 58.333 | 144 | 51 | 4 | 458 | 593 | 4 | 146 | 3.23e-40 | 145 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473140 | AT5G05190.1 | 47.826 | 92 | 43 | 1 | 635 | 721 | 461 | 552 | 3.49e-21 | 99.4 |
| Msa0473140 | AT3G56410.3 | 45.714 | 70 | 38 | 0 | 645 | 714 | 223 | 292 | 6.83e-13 | 73.6 |
| Msa0473140 | AT3G56410.1 | 45.714 | 70 | 38 | 0 | 645 | 714 | 312 | 381 | 8.16e-13 | 73.2 |
| Msa0473140 | AT3G56410.2 | 45.714 | 70 | 38 | 0 | 645 | 714 | 359 | 428 | 8.73e-13 | 73.2 |
Find 191 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCATATTATGATGATTA+TGG | 0.138733 | 3_3:+75606943 | Msa0473140:CDS |
| GCAGATGCGGTGTTGATTTC+TGG | 0.142527 | 3_3:+75605296 | Msa0473140:CDS |
| GAAATCACTGAAACTAATTT+TGG | 0.164374 | 3_3:+75605254 | Msa0473140:CDS |
| TGTAACTGGCTTCTCTTTAT+TGG | 0.169718 | 3_3:-75605336 | None:intergenic |
| ACATTTAACTATCCGAATTT+TGG | 0.174552 | 3_3:-75604240 | None:intergenic |
| TCACAGTGAGTGATGTTATT+TGG | 0.210386 | 3_3:-75605107 | None:intergenic |
| TCAAAGTTTAATGGTGTTCT+TGG | 0.238441 | 3_3:+75605734 | Msa0473140:CDS |
| GTTTCAGTGATTTCCATTTC+AGG | 0.261394 | 3_3:-75605245 | None:intergenic |
| GATCATAGTTCAAAGTTTAA+TGG | 0.262570 | 3_3:+75605725 | Msa0473140:CDS |
| GGAAGAAGTTGCCGGCATTT+AGG | 0.282712 | 3_3:-75604263 | None:intergenic |
| AATCCTGAAGTGGAAATTAT+TGG | 0.286338 | 3_3:+75605368 | Msa0473140:CDS |
| TCAAGAGAGTGTTATTTAGA+TGG | 0.287618 | 3_3:+75604960 | Msa0473140:CDS |
| GGATTTGCACCTTCTGTAAC+TGG | 0.294631 | 3_3:-75605350 | None:intergenic |
| GAACAAATTAAGTCCTCTTT+TGG | 0.307285 | 3_3:-75605173 | None:intergenic |
| TTCCAGTAATTTCCCCTTCA+AGG | 0.315354 | 3_3:-75605505 | None:intergenic |
| TTTCCAATAATTTCCACTTC+AGG | 0.322328 | 3_3:-75605371 | None:intergenic |
| TGCCTTCTGAGTGACAATTT+AGG | 0.324245 | 3_3:-75605062 | None:intergenic |
| TTTCATATTATGATGATTAT+GGG | 0.327417 | 3_3:+75606944 | Msa0473140:CDS |
| TGGAGCTGATTTATCACTAT+TGG | 0.334684 | 3_3:-75605471 | None:intergenic |
| TACAGCTAAGAAACAAAGTT+TGG | 0.337502 | 3_3:+75604791 | Msa0473140:intron |
| ATTATTGGAAATGATTTAGA+AGG | 0.342099 | 3_3:+75605383 | Msa0473140:CDS |
| ATTGAGGAGATAAGTAATAA+TGG | 0.344048 | 3_3:+75605131 | Msa0473140:CDS |
| ATAGCTGATTGGTCATTGTT+AGG | 0.346593 | 3_3:-75605605 | None:intergenic |
| TGCATTGATTTCTTGCATAC+TGG | 0.352905 | 3_3:-75604829 | None:intergenic |
| TGTTGTGTCCACTTCAGATT+TGG | 0.354447 | 3_3:-75605636 | None:intergenic |
| CTTGTTGCTTCAGCTGAATA+AGG | 0.358091 | 3_3:-75606394 | None:intergenic |
| AGCTCCTCGTATGGGGATCT+TGG | 0.360440 | 3_3:+75605872 | Msa0473140:CDS |
| GTTGAGCTAGGAGAGACATT+TGG | 0.361833 | 3_3:-75607057 | None:intergenic |
| TCATCATGCACTCCATTTGA+TGG | 0.364226 | 3_3:-75606073 | None:intergenic |
| AACCTTGAAGGGGAAATTAC+TGG | 0.369393 | 3_3:+75605503 | Msa0473140:CDS |
| TTGAGCTAGGAGAGACATTT+GGG | 0.377528 | 3_3:-75607056 | None:intergenic |
| TTCATTACAAAGACCAAAAG+AGG | 0.384209 | 3_3:+75605160 | Msa0473140:CDS |
| ATAATCATCATAATATGAAA+TGG | 0.389072 | 3_3:-75606941 | None:intergenic |
| CAGGAAATTGTCAGCAGAAA+AGG | 0.389892 | 3_3:+75607179 | Msa0473140:CDS |
| CCTTCAAGGTTCGTACCAAC+TGG | 0.397424 | 3_3:-75605491 | None:intergenic |
| TTTCCTGGTTTCAGACATAC+TGG | 0.398983 | 3_3:-75607163 | None:intergenic |
| CTGTGGTGAGGAAATACTTA+AGG | 0.400170 | 3_3:+75606599 | Msa0473140:CDS |
| GATAGGGGACAGACCTGAAA+TGG | 0.402925 | 3_3:+75605232 | Msa0473140:CDS |
| TATGACAAATCAGCTCTGAT+AGG | 0.403629 | 3_3:+75605215 | Msa0473140:CDS |
| CTCTCCTAGCTCAACATTCA+AGG | 0.405053 | 3_3:+75607065 | Msa0473140:CDS |
| GCCCCTCTTATCACTTTACT+TGG | 0.409919 | 3_3:-75607255 | None:intergenic |
| CTGTGCTGTCTTTCATGACA+TGG | 0.414712 | 3_3:-75605931 | None:intergenic |
| TCCAACATGAAGATTTATAC+AGG | 0.415572 | 3_3:+75606494 | Msa0473140:CDS |
| AACATATTTACCACCATTCA+AGG | 0.420023 | 3_3:-75607031 | None:intergenic |
| GTTCACAGACGAAGAAGAAC+TGG | 0.424525 | 3_3:+75605022 | Msa0473140:CDS |
| ACAGAATATCCTTGAGGCTC+TGG | 0.425857 | 3_3:-75604284 | None:intergenic |
| ATTTGTTCATCTGATGAAGA+TGG | 0.427120 | 3_3:+75605188 | Msa0473140:CDS |
| GTAAGGTGGTTACCAAAATT+CGG | 0.427969 | 3_3:+75604228 | Msa0473140:CDS |
| TCTTCGTCTGTGAACTTGAA+TGG | 0.431704 | 3_3:-75605014 | None:intergenic |
| CAAGAAATCAATGCAGCTCC+TGG | 0.432286 | 3_3:+75604837 | Msa0473140:CDS |
| CCTTTCTCATCGAATACTAT+AGG | 0.433792 | 3_3:+75606817 | Msa0473140:CDS |
| GAGTGTTATTTAGATGGAAA+TGG | 0.434349 | 3_3:+75604966 | Msa0473140:CDS |
| TCGAGAATGCCTTACAGATC+AGG | 0.435054 | 3_3:+75606034 | Msa0473140:CDS |
| TCCGCGAGTACTTATGCCTT+TGG | 0.441596 | 3_3:-75606369 | None:intergenic |
| GGAGTAGAAGACTTGAATAA+TGG | 0.442556 | 3_3:+75605404 | Msa0473140:CDS |
| CCAGTTGGTACGAACCTTGA+AGG | 0.447258 | 3_3:+75605491 | Msa0473140:CDS |
| CTTAAGGGACAAACATAACT+TGG | 0.447454 | 3_3:+75606615 | Msa0473140:CDS |
| TCCTCGGAAAGATAGTTTGA+AGG | 0.454231 | 3_3:+75604920 | Msa0473140:CDS |
| GAAGGTCATGGCTATGGTAT+TGG | 0.459591 | 3_3:-75606273 | None:intergenic |
| CACTAACCACCTCGCTTCTA+CGG | 0.460505 | 3_3:-75606861 | None:intergenic |
| CGTAGAAGCGAGGTGGTTAG+TGG | 0.462545 | 3_3:+75606862 | Msa0473140:CDS |
| CAATGACCAATCAGCTATAG+AGG | 0.463430 | 3_3:+75605610 | Msa0473140:CDS |
| TATATTTGAAGGAATATGTC+TGG | 0.464306 | 3_3:+75604206 | None:intergenic |
| GAGGTAAAGCCTCCACAAAA+AGG | 0.465708 | 3_3:+75607201 | Msa0473140:CDS |
| ACGGATACAGATGAATCAAC+TGG | 0.473634 | 3_3:+75607132 | Msa0473140:CDS |
| CAACAAATTCATCCCTTGAA+TGG | 0.475924 | 3_3:+75607018 | Msa0473140:CDS |
| ATATGAGCTTCTTGTGGTTG+AGG | 0.478521 | 3_3:-75605777 | None:intergenic |
| TGGTATCCTCTATAGCTGAT+TGG | 0.481238 | 3_3:-75605616 | None:intergenic |
| ACACCAAGTAAAGTGATAAG+AGG | 0.482329 | 3_3:+75607252 | Msa0473140:CDS |
| TTGCTAATAGCTCCTCGTAT+GGG | 0.484351 | 3_3:+75605864 | Msa0473140:CDS |
| ATGACAAATCAGCTCTGATA+GGG | 0.484835 | 3_3:+75605216 | Msa0473140:CDS |
| CTTTCATAGCCTGATCTGTA+AGG | 0.485476 | 3_3:-75606043 | None:intergenic |
| TAATCATCATAATATGAAAT+GGG | 0.485762 | 3_3:-75606940 | None:intergenic |
| TGTGGTGAGGAAATACTTAA+GGG | 0.486354 | 3_3:+75606600 | Msa0473140:CDS |
| GTTATTTGGACCACCTTTGT+TGG | 0.486422 | 3_3:-75605093 | None:intergenic |
| CATCACTCACTGTGAGATTG+AGG | 0.490880 | 3_3:+75605115 | Msa0473140:CDS |
| TTCTGCTGGTGTATCTTACA+AGG | 0.491674 | 3_3:+75606231 | Msa0473140:CDS |
| GCTGAAGGAATGACCAGAAA+AGG | 0.496200 | 3_3:+75605833 | Msa0473140:CDS |
| AGAAGAACTGGAAAGTGAGT+TGG | 0.497447 | 3_3:+75605034 | Msa0473140:CDS |
| AGGTACTCTTCATAAACTCA+TGG | 0.498632 | 3_3:+75607221 | Msa0473140:CDS |
| TTTGTTGTGTAAGAGAAAGA+AGG | 0.499054 | 3_3:-75607002 | None:intergenic |
| TAAGAGGGGCATCTTGTTGA+AGG | 0.499268 | 3_3:+75607268 | Msa0473140:CDS |
| GAAAGTGGCAGGCCATCAAA+TGG | 0.507500 | 3_3:+75606061 | Msa0473140:CDS |
| GTGTACAAGTGTGGTGGATG+TGG | 0.512363 | 3_3:+75604305 | Msa0473140:CDS |
| GCATATTGATAGAAAACGTC+AGG | 0.513186 | 3_3:+75604893 | Msa0473140:CDS |
| AAGGAATATGTCTGGTAAGG+TGG | 0.515393 | 3_3:+75604214 | None:intergenic |
| CGACATCACAAGCCAGTGGC+AGG | 0.515436 | 3_3:+75606643 | Msa0473140:CDS |
| CTTGATCACTCTAGATGTAT+CGG | 0.516311 | 3_3:+75606319 | Msa0473140:CDS |
| GCCATGACCTTCATGAGGGA+AGG | 0.519968 | 3_3:+75606284 | Msa0473140:CDS |
| TCCTCTCCTTCTCCCTCTTG+TGG | 0.520199 | 3_3:-75605566 | None:intergenic |
| AATCTGCAGGTAGCTGAAGC+AGG | 0.520263 | 3_3:-75606702 | None:intergenic |
| CGAGTACTTATGCCTTTGGC+GGG | 0.521127 | 3_3:-75606365 | None:intergenic |
| GAGGCTCTGGAAGAAGTTGC+CGG | 0.525192 | 3_3:-75604271 | None:intergenic |
| ACCTGTATAAATCTTCATGT+TGG | 0.526192 | 3_3:-75606495 | None:intergenic |
| GTTGATTCATCTGTATCCGT+TGG | 0.526902 | 3_3:-75607129 | None:intergenic |
| TCTGGTCATTCCTTCAGCAA+CGG | 0.529453 | 3_3:-75605828 | None:intergenic |
| ATTACTGGAAACAATATAGC+AGG | 0.531297 | 3_3:+75605518 | Msa0473140:CDS |
| GGATGTGGCACTGACCTTCA+AGG | 0.532393 | 3_3:+75604320 | Msa0473140:CDS |
| AAAGGAGCTCCACCTGCCAC+TGG | 0.533821 | 3_3:-75606655 | None:intergenic |
| CCTCATGAAGGTCATGGCTA+TGG | 0.534051 | 3_3:-75606279 | None:intergenic |
| TTTGCCTTGAATGTTGAGCT+AGG | 0.534758 | 3_3:-75607069 | None:intergenic |
| TAGTTAAATGTCCTAAATGC+CGG | 0.534878 | 3_3:+75604252 | Msa0473140:CDS |
| TAATGCAATCGCGGCTCCAA+CGG | 0.535239 | 3_3:+75607113 | Msa0473140:CDS |
| CCTATAGTATTCGATGAGAA+AGG | 0.535878 | 3_3:-75606817 | None:intergenic |
| TTGAAGGAATATGTCTGGTA+AGG | 0.536667 | 3_3:+75604211 | None:intergenic |
| CATTTATGACAAGTGACAAA+AGG | 0.537261 | 3_3:-75606673 | None:intergenic |
| CCTCCAGTATGTCTGAAACC+AGG | 0.539270 | 3_3:+75607160 | Msa0473140:CDS |
| CAGTTGGTACGAACCTTGAA+GGG | 0.541921 | 3_3:+75605492 | Msa0473140:CDS |
| CACCAAGTAAAGTGATAAGA+GGG | 0.542812 | 3_3:+75607253 | Msa0473140:CDS |
| AAATGCAAGCAATGAGATTG+TGG | 0.546365 | 3_3:+75605676 | Msa0473140:CDS |
| GATCAGGCTATGAAAGTGGC+AGG | 0.549263 | 3_3:+75606050 | Msa0473140:CDS |
| CTCGCGTGAGGACACTGACC+AGG | 0.551465 | 3_3:+75606120 | Msa0473140:CDS |
| GCGAGTACTTATGCCTTTGG+CGG | 0.552548 | 3_3:-75606366 | None:intergenic |
| TGCTAATAGCTCCTCGTATG+GGG | 0.553250 | 3_3:+75605865 | Msa0473140:CDS |
| CTTGCTAATAGCTCCTCGTA+TGG | 0.554567 | 3_3:+75605863 | Msa0473140:CDS |
| TGTATCGGAAGATGTAATCA+TGG | 0.555125 | 3_3:+75606334 | Msa0473140:CDS |
| GAGAAAACCTTCCCTCATGA+AGG | 0.564438 | 3_3:-75606291 | None:intergenic |
| ATCAAATGGAGTGCATGATG+AGG | 0.568884 | 3_3:+75606075 | Msa0473140:CDS |
| ATGGAATTGCGTCCCGCCAA+AGG | 0.570672 | 3_3:+75606353 | Msa0473140:CDS |
| TAATGGCAATTTGCCACTAG+AGG | 0.571741 | 3_3:+75605421 | Msa0473140:CDS |
| CTGCTGGTGTATCTTACAAG+GGG | 0.572567 | 3_3:+75606233 | Msa0473140:CDS |
| TACAGATCAGGCTATGAAAG+TGG | 0.576466 | 3_3:+75606046 | Msa0473140:CDS |
| TGCAGCTCCTGGAAAAGCAT+CGG | 0.577154 | 3_3:+75604848 | Msa0473140:CDS |
| AAAGAGAAGCCAGTTACAGA+AGG | 0.579951 | 3_3:+75605341 | Msa0473140:CDS |
| GCCACAAGAGGGAGAAGGAG+AGG | 0.582814 | 3_3:+75605565 | Msa0473140:CDS |
| ACAAATGGAAGAGTTTCTGC+TGG | 0.583470 | 3_3:+75606217 | Msa0473140:CDS |
| AGAGGATACCAAATCTGAAG+TGG | 0.584314 | 3_3:+75605628 | Msa0473140:CDS |
| CATCACAAGCCAGTGGCAGG+TGG | 0.586203 | 3_3:+75606646 | Msa0473140:CDS |
| ACATATTTACCACCATTCAA+GGG | 0.586967 | 3_3:-75607030 | None:intergenic |
| ACCTTCCCTCATGAAGGTCA+TGG | 0.587046 | 3_3:-75606285 | None:intergenic |
| GGTATTGGTATGCAGAACTA+CGG | 0.587389 | 3_3:-75606258 | None:intergenic |
| ACTATGATCTCTTAATTCTG+TGG | 0.588099 | 3_3:-75605711 | None:intergenic |
| GGTACTCTTCATAAACTCAT+GGG | 0.590389 | 3_3:+75607222 | Msa0473140:CDS |
| TTATAAAGGAGAAAATCTGC+AGG | 0.591353 | 3_3:-75606715 | None:intergenic |
| GCCTTCAAACTATCTTTCCG+AGG | 0.593288 | 3_3:-75604921 | None:intergenic |
| AATGCTTACACCGTTGCTGA+AGG | 0.598914 | 3_3:+75605818 | Msa0473140:CDS |
| TAATGGAAAATGGCCACAAG+AGG | 0.599730 | 3_3:+75605553 | Msa0473140:CDS |
| TACCTAAATTGTCACTCAGA+AGG | 0.601587 | 3_3:+75605060 | Msa0473140:CDS |
| GGAATGACCAGAAAAGGTAA+AGG | 0.602415 | 3_3:+75605839 | Msa0473140:CDS |
| AGAAGGTGCAAATCCTGAAG+TGG | 0.603285 | 3_3:+75605358 | Msa0473140:CDS |
| TCTGCTGGTGTATCTTACAA+GGG | 0.604895 | 3_3:+75606232 | Msa0473140:CDS |
| CTACGGTGAAGCTCACGAGA+TGG | 0.605302 | 3_3:-75606844 | None:intergenic |
| TCAAATGGAGTGCATGATGA+GGG | 0.605561 | 3_3:+75606076 | Msa0473140:CDS |
| TATATGAGTGAGGAAACAAA+TGG | 0.606561 | 3_3:+75606202 | Msa0473140:CDS |
| CAAATTCATCCCTTGAATGG+TGG | 0.607888 | 3_3:+75607021 | Msa0473140:CDS |
| GATCTGTAAGGCATTCTCGA+TGG | 0.608638 | 3_3:-75606031 | None:intergenic |
| GAAAACGTCAGGTTCTTCCT+CGG | 0.608765 | 3_3:+75604904 | Msa0473140:CDS |
| GTCGCTAGAGGAAGCAGATG+CGG | 0.611992 | 3_3:+75605283 | Msa0473140:CDS |
| CTAAGACACGGGAACAACAA+TGG | 0.613621 | 3_3:-75606447 | None:intergenic |
| CACAACATGGTAATTCACGT+TGG | 0.615905 | 3_3:+75605981 | Msa0473140:CDS |
| ACAAGAAGCTCATATATCAC+AGG | 0.619189 | 3_3:+75605785 | Msa0473140:CDS |
| TCTTTCACACGACTCGCGTG+AGG | 0.622099 | 3_3:+75606108 | Msa0473140:CDS |
| GAAATTGTCAGCAGAAAAGG+AGG | 0.624190 | 3_3:+75607182 | Msa0473140:CDS |
| TGTGATATATGAGCTTCTTG+TGG | 0.626127 | 3_3:-75605783 | None:intergenic |
| AAATGGCCACAAGAGGGAGA+AGG | 0.626477 | 3_3:+75605560 | Msa0473140:CDS |
| CCAGAATTAAAATCCTCTAG+TGG | 0.627898 | 3_3:-75605434 | None:intergenic |
| GGCATAGGGCTACTGTGGTG+AGG | 0.627962 | 3_3:+75606587 | Msa0473140:CDS |
| AGAAGAATCTGCTAAGACAC+GGG | 0.628845 | 3_3:-75606458 | None:intergenic |
| AATGGAAAATGGCCACAAGA+GGG | 0.631353 | 3_3:+75605554 | Msa0473140:CDS |
| GTATGTCACAAGCTGAAATG+TGG | 0.632938 | 3_3:+75606742 | Msa0473140:CDS |
| CATAGAGTGTCCAACAAAGG+TGG | 0.635172 | 3_3:+75605083 | Msa0473140:CDS |
| TCTGTTTCACTGAAGCATTG+TGG | 0.635814 | 3_3:-75606550 | None:intergenic |
| GAGAAGAATCTGCTAAGACA+CGG | 0.636353 | 3_3:-75606459 | None:intergenic |
| TCAGAGGCATAGGGCTACTG+TGG | 0.638205 | 3_3:+75606582 | Msa0473140:CDS |
| TGACAAATCAGCTCTGATAG+GGG | 0.640991 | 3_3:+75605217 | Msa0473140:CDS |
| GAAATGTGGTAAATGTTCAG+AGG | 0.642119 | 3_3:+75606756 | Msa0473140:CDS |
| TCTGAAGTGGACACAACAGA+AGG | 0.642126 | 3_3:+75605641 | Msa0473140:CDS |
| GATGGAAATGGTGAGTACAA+TGG | 0.642186 | 3_3:+75604978 | Msa0473140:CDS |
| CAACTTCTTCCAGAGCCTCA+AGG | 0.642945 | 3_3:+75604275 | Msa0473140:CDS |
| CCTGGTTTCAGACATACTGG+AGG | 0.645462 | 3_3:-75607160 | None:intergenic |
| CCATAGCCATGACCTTCATG+AGG | 0.648193 | 3_3:+75606279 | Msa0473140:CDS |
| AGTGATAAATCAGCTCCAGT+TGG | 0.651091 | 3_3:+75605476 | Msa0473140:CDS |
| AGGCATAGAGTGTCCAACAA+AGG | 0.653537 | 3_3:+75605080 | Msa0473140:CDS |
| CAAGACTCGCTATATGAGTG+AGG | 0.657867 | 3_3:+75606192 | Msa0473140:CDS |
| CATAGCCATGACCTTCATGA+GGG | 0.658552 | 3_3:+75606280 | Msa0473140:CDS |
| TATTCTGTGTACAAGTGTGG+TGG | 0.659670 | 3_3:+75604299 | Msa0473140:CDS |
| GGTAACAAGAATGATCTACA+TGG | 0.670834 | 3_3:-75606426 | None:intergenic |
| TGAGCTTCACCGTAGAAGCG+AGG | 0.674280 | 3_3:+75606852 | Msa0473140:CDS |
| AGTTGGTACGAACCTTGAAG+GGG | 0.674859 | 3_3:+75605493 | Msa0473140:CDS |
| GCCAAAGGCATAAGTACTCG+CGG | 0.688085 | 3_3:+75606368 | Msa0473140:CDS |
| TGTTCCAAGATCCCCATACG+AGG | 0.688484 | 3_3:-75605876 | None:intergenic |
| CATACGAGGAGCTATTAGCA+AGG | 0.689093 | 3_3:-75605862 | None:intergenic |
| ACCAAGTAAAGTGATAAGAG+GGG | 0.689921 | 3_3:+75607254 | Msa0473140:CDS |
| GGATATTCTGTGTACAAGTG+TGG | 0.693148 | 3_3:+75604296 | Msa0473140:CDS |
| TAGTTGACATGAGATACTGA+TGG | 0.696878 | 3_3:-75606895 | None:intergenic |
| GGAAATGGTGAGTACAATGG+CGG | 0.699790 | 3_3:+75604981 | Msa0473140:CDS |
| GTGTTGGACAATACACAACA+TGG | 0.710351 | 3_3:+75605968 | Msa0473140:CDS |
| TAAGCGACATCACAAGCCAG+TGG | 0.712041 | 3_3:+75606639 | Msa0473140:CDS |
| TTGTACACAGAATATCCTTG+AGG | 0.719345 | 3_3:-75604290 | None:intergenic |
| TCATGTTGGAAATGAACACG+TGG | 0.723896 | 3_3:-75606481 | None:intergenic |
| GCTTCACCGTAGAAGCGAGG+TGG | 0.726929 | 3_3:+75606855 | Msa0473140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATTAAATAATGGAAAA+TGG | + | chr3_3:75605543-75605562 | Msa0473140:CDS | 10.0% |
| !! | GAAATTTATATCAATCAAAT+AGG | - | chr3_3:75604571-75604590 | None:intergenic | 15.0% |
| !!! | TTAATATCATTATTTGAAAC+CGG | - | chr3_3:75604705-75604724 | None:intergenic | 15.0% |
| !! | TAATCATCATAATATGAAAT+GGG | - | chr3_3:75606943-75606962 | None:intergenic | 15.0% |
| !! | ATAATCATCATAATATGAAA+TGG | - | chr3_3:75606944-75606963 | None:intergenic | 15.0% |
| !! | ATTTCATATTATGATGATTA+TGG | + | chr3_3:75606943-75606962 | Msa0473140:CDS | 15.0% |
| !! | TTTCATATTATGATGATTAT+GGG | + | chr3_3:75606944-75606963 | Msa0473140:CDS | 15.0% |
| !! | ATTATTGGAAATGATTTAGA+AGG | + | chr3_3:75605383-75605402 | Msa0473140:CDS | 20.0% |
| !! | ACATTTAACTATCCGAATTT+TGG | - | chr3_3:75604243-75604262 | None:intergenic | 25.0% |
| !! | AATTAGATTTTTCACCTTGA+AGG | - | chr3_3:75604337-75604356 | None:intergenic | 25.0% |
| !! | AGTAAAATTGAAGAGTACAA+TGG | - | chr3_3:75604373-75604392 | None:intergenic | 25.0% |
| ! | TATAACAGAATACATGACAT+TGG | - | chr3_3:75604533-75604552 | None:intergenic | 25.0% |
| ! | AATTCTCATGTAAATGTTGT+TGG | - | chr3_3:75604643-75604662 | None:intergenic | 25.0% |
| ! | TGAGAATTTCTATGAATATC+CGG | + | chr3_3:75604683-75604702 | Msa0473140:intron | 25.0% |
| ! | ATTGAGGAGATAAGTAATAA+TGG | + | chr3_3:75605131-75605150 | Msa0473140:CDS | 25.0% |
| !! | GAAATCACTGAAACTAATTT+TGG | + | chr3_3:75605254-75605273 | Msa0473140:CDS | 25.0% |
| ! | GCAGGAGAAAAATTAAATAA+TGG | + | chr3_3:75605536-75605555 | Msa0473140:CDS | 25.0% |
| ! | GATCATAGTTCAAAGTTTAA+TGG | + | chr3_3:75605725-75605744 | Msa0473140:CDS | 25.0% |
| ! | AGTGAATAAAAACAAAGTGT+TGG | + | chr3_3:75605952-75605971 | Msa0473140:CDS | 25.0% |
| ! | AAAAATGAAACTGATGAGAA+TGG | + | chr3_3:75606144-75606163 | Msa0473140:CDS | 25.0% |
| !! | TGTGACATACTCTTTTATAA+AGG | - | chr3_3:75606732-75606751 | None:intergenic | 25.0% |
| !!! | AAGATATTTTAATGCAATCG+CGG | + | chr3_3:75607104-75607123 | Msa0473140:CDS | 25.0% |
| TAGTTAAATGTCCTAAATGC+CGG | + | chr3_3:75604252-75604271 | Msa0473140:CDS | 30.0% | |
| CTCTTGTAATAGTTTGACAT+TGG | + | chr3_3:75604466-75604485 | Msa0473140:intron | 30.0% | |
| TACAGCTAAGAAACAAAGTT+TGG | + | chr3_3:75604791-75604810 | Msa0473140:intron | 30.0% | |
| !! | TCAAGAGAGTGTTATTTAGA+TGG | + | chr3_3:75604960-75604979 | Msa0473140:CDS | 30.0% |
| !! | GAGTGTTATTTAGATGGAAA+TGG | + | chr3_3:75604966-75604985 | Msa0473140:CDS | 30.0% |
| TTCATTACAAAGACCAAAAG+AGG | + | chr3_3:75605160-75605179 | Msa0473140:CDS | 30.0% | |
| ! | GAACAAATTAAGTCCTCTTT+TGG | - | chr3_3:75605176-75605195 | None:intergenic | 30.0% |
| ATTTGTTCATCTGATGAAGA+TGG | + | chr3_3:75605188-75605207 | Msa0473140:CDS | 30.0% | |
| AATCCTGAAGTGGAAATTAT+TGG | + | chr3_3:75605368-75605387 | Msa0473140:CDS | 30.0% | |
| TTTCCAATAATTTCCACTTC+AGG | - | chr3_3:75605374-75605393 | None:intergenic | 30.0% | |
| ATTACTGGAAACAATATAGC+AGG | + | chr3_3:75605518-75605537 | Msa0473140:CDS | 30.0% | |
| ACTATGATCTCTTAATTCTG+TGG | - | chr3_3:75605714-75605733 | None:intergenic | 30.0% | |
| TCAAAGTTTAATGGTGTTCT+TGG | + | chr3_3:75605734-75605753 | Msa0473140:CDS | 30.0% | |
| !!! | ATGACATGGTTTTTTTCATG+TGG | - | chr3_3:75605920-75605939 | None:intergenic | 30.0% |
| !!! | TCATCAGTTTCATTTTTTCC+TGG | - | chr3_3:75606141-75606160 | None:intergenic | 30.0% |
| TATATGAGTGAGGAAACAAA+TGG | + | chr3_3:75606202-75606221 | Msa0473140:CDS | 30.0% | |
| TCCAACATGAAGATTTATAC+AGG | + | chr3_3:75606494-75606513 | Msa0473140:CDS | 30.0% | |
| ACCTGTATAAATCTTCATGT+TGG | - | chr3_3:75606498-75606517 | None:intergenic | 30.0% | |
| ! | AAACAGATTCTGATTTTCAG+AGG | + | chr3_3:75606566-75606585 | Msa0473140:CDS | 30.0% |
| CATTTATGACAAGTGACAAA+AGG | - | chr3_3:75606676-75606695 | None:intergenic | 30.0% | |
| TTATAAAGGAGAAAATCTGC+AGG | - | chr3_3:75606718-75606737 | None:intergenic | 30.0% | |
| ! | CTCAAGTTTTCATTGAAGAA+TGG | + | chr3_3:75606781-75606800 | Msa0473140:CDS | 30.0% |
| !! | TAATATGAAATGGGTTTTGC+AGG | - | chr3_3:75606934-75606953 | None:intergenic | 30.0% |
| ! | TTTGTTGTGTAAGAGAAAGA+AGG | - | chr3_3:75607005-75607024 | None:intergenic | 30.0% |
| ACATATTTACCACCATTCAA+GGG | - | chr3_3:75607033-75607052 | None:intergenic | 30.0% | |
| AACATATTTACCACCATTCA+AGG | - | chr3_3:75607034-75607053 | None:intergenic | 30.0% | |
| !!! | TTATGAAGAGTACCTTTTTG+TGG | - | chr3_3:75607216-75607235 | None:intergenic | 30.0% |
| GTAAGGTGGTTACCAAAATT+CGG | + | chr3_3:75604228-75604247 | Msa0473140:CDS | 35.0% | |
| TTGTACACAGAATATCCTTG+AGG | - | chr3_3:75604293-75604312 | None:intergenic | 35.0% | |
| ACAGAATACATGACATTGGT+TGG | - | chr3_3:75604529-75604548 | None:intergenic | 35.0% | |
| GTAAATGTTGTTGGACAACA+TGG | - | chr3_3:75604634-75604653 | None:intergenic | 35.0% | |
| !! | TGCATTGATTTCTTGCATAC+TGG | - | chr3_3:75604832-75604851 | None:intergenic | 35.0% |
| GCATATTGATAGAAAACGTC+AGG | + | chr3_3:75604893-75604912 | Msa0473140:CDS | 35.0% | |
| TACCTAAATTGTCACTCAGA+AGG | + | chr3_3:75605060-75605079 | Msa0473140:CDS | 35.0% | |
| TCACAGTGAGTGATGTTATT+TGG | - | chr3_3:75605110-75605129 | None:intergenic | 35.0% | |
| ! | TATGACAAATCAGCTCTGAT+AGG | + | chr3_3:75605215-75605234 | Msa0473140:CDS | 35.0% |
| ! | ATGACAAATCAGCTCTGATA+GGG | + | chr3_3:75605216-75605235 | Msa0473140:CDS | 35.0% |
| GTTTCAGTGATTTCCATTTC+AGG | - | chr3_3:75605248-75605267 | None:intergenic | 35.0% | |
| ! | TGTAACTGGCTTCTCTTTAT+TGG | - | chr3_3:75605339-75605358 | None:intergenic | 35.0% |
| GGAGTAGAAGACTTGAATAA+TGG | + | chr3_3:75605404-75605423 | Msa0473140:CDS | 35.0% | |
| CCAGAATTAAAATCCTCTAG+TGG | - | chr3_3:75605437-75605456 | None:intergenic | 35.0% | |
| !!! | CCACTAGAGGATTTTAATTC+TGG | + | chr3_3:75605434-75605453 | Msa0473140:CDS | 35.0% |
| ! | TGGAGCTGATTTATCACTAT+TGG | - | chr3_3:75605474-75605493 | None:intergenic | 35.0% |
| ! | ATAGCTGATTGGTCATTGTT+AGG | - | chr3_3:75605608-75605627 | None:intergenic | 35.0% |
| AAATGCAAGCAATGAGATTG+TGG | + | chr3_3:75605676-75605695 | Msa0473140:CDS | 35.0% | |
| TGTGATATATGAGCTTCTTG+TGG | - | chr3_3:75605786-75605805 | None:intergenic | 35.0% | |
| ACAAGAAGCTCATATATCAC+AGG | + | chr3_3:75605785-75605804 | Msa0473140:CDS | 35.0% | |
| CTTGATCACTCTAGATGTAT+CGG | + | chr3_3:75606319-75606338 | Msa0473140:CDS | 35.0% | |
| TGTATCGGAAGATGTAATCA+TGG | + | chr3_3:75606334-75606353 | Msa0473140:CDS | 35.0% | |
| GGTAACAAGAATGATCTACA+TGG | - | chr3_3:75606429-75606448 | None:intergenic | 35.0% | |
| !! | ATTCTGATTTTCAGAGGCAT+AGG | + | chr3_3:75606572-75606591 | Msa0473140:CDS | 35.0% |
| !! | TTCTGATTTTCAGAGGCATA+GGG | + | chr3_3:75606573-75606592 | Msa0473140:CDS | 35.0% |
| TGTGGTGAGGAAATACTTAA+GGG | + | chr3_3:75606600-75606619 | Msa0473140:CDS | 35.0% | |
| CTTAAGGGACAAACATAACT+TGG | + | chr3_3:75606615-75606634 | Msa0473140:CDS | 35.0% | |
| GAAATGTGGTAAATGTTCAG+AGG | + | chr3_3:75606756-75606775 | Msa0473140:CDS | 35.0% | |
| CCTATAGTATTCGATGAGAA+AGG | - | chr3_3:75606820-75606839 | None:intergenic | 35.0% | |
| CCTTTCTCATCGAATACTAT+AGG | + | chr3_3:75606817-75606836 | Msa0473140:CDS | 35.0% | |
| TAGTTGACATGAGATACTGA+TGG | - | chr3_3:75606898-75606917 | None:intergenic | 35.0% | |
| CAACAAATTCATCCCTTGAA+TGG | + | chr3_3:75607018-75607037 | Msa0473140:CDS | 35.0% | |
| AGGTACTCTTCATAAACTCA+TGG | + | chr3_3:75607221-75607240 | Msa0473140:CDS | 35.0% | |
| GGTACTCTTCATAAACTCAT+GGG | + | chr3_3:75607222-75607241 | Msa0473140:CDS | 35.0% | |
| ACACCAAGTAAAGTGATAAG+AGG | + | chr3_3:75607252-75607271 | Msa0473140:CDS | 35.0% | |
| CACCAAGTAAAGTGATAAGA+GGG | + | chr3_3:75607253-75607272 | Msa0473140:CDS | 35.0% | |
| ACCAAGTAAAGTGATAAGAG+GGG | + | chr3_3:75607254-75607273 | Msa0473140:CDS | 35.0% | |
| GGATATTCTGTGTACAAGTG+TGG | + | chr3_3:75604296-75604315 | Msa0473140:CDS | 40.0% | |
| TATTCTGTGTACAAGTGTGG+TGG | + | chr3_3:75604299-75604318 | Msa0473140:CDS | 40.0% | |
| CAGTGATTCAGAACAGAAAG+AGG | - | chr3_3:75604746-75604765 | None:intergenic | 40.0% | |
| TCCTCGGAAAGATAGTTTGA+AGG | + | chr3_3:75604920-75604939 | Msa0473140:CDS | 40.0% | |
| GATGGAAATGGTGAGTACAA+TGG | + | chr3_3:75604978-75604997 | Msa0473140:CDS | 40.0% | |
| TCTTCGTCTGTGAACTTGAA+TGG | - | chr3_3:75605017-75605036 | None:intergenic | 40.0% | |
| AGAAGAACTGGAAAGTGAGT+TGG | + | chr3_3:75605034-75605053 | Msa0473140:CDS | 40.0% | |
| TGCCTTCTGAGTGACAATTT+AGG | - | chr3_3:75605065-75605084 | None:intergenic | 40.0% | |
| GTTATTTGGACCACCTTTGT+TGG | - | chr3_3:75605096-75605115 | None:intergenic | 40.0% | |
| ! | TGACAAATCAGCTCTGATAG+GGG | + | chr3_3:75605217-75605236 | Msa0473140:CDS | 40.0% |
| !! | TTTTGGAAACTTGTCGCTAG+AGG | + | chr3_3:75605271-75605290 | Msa0473140:CDS | 40.0% |
| AAAGAGAAGCCAGTTACAGA+AGG | + | chr3_3:75605341-75605360 | Msa0473140:CDS | 40.0% | |
| TAATGGCAATTTGCCACTAG+AGG | + | chr3_3:75605421-75605440 | Msa0473140:CDS | 40.0% | |
| AGTGATAAATCAGCTCCAGT+TGG | + | chr3_3:75605476-75605495 | Msa0473140:CDS | 40.0% | |
| AACCTTGAAGGGGAAATTAC+TGG | + | chr3_3:75605503-75605522 | Msa0473140:CDS | 40.0% | |
| TTCCAGTAATTTCCCCTTCA+AGG | - | chr3_3:75605508-75605527 | None:intergenic | 40.0% | |
| TAATGGAAAATGGCCACAAG+AGG | + | chr3_3:75605553-75605572 | Msa0473140:CDS | 40.0% | |
| AATGGAAAATGGCCACAAGA+GGG | + | chr3_3:75605554-75605573 | Msa0473140:CDS | 40.0% | |
| CAATGACCAATCAGCTATAG+AGG | + | chr3_3:75605610-75605629 | Msa0473140:CDS | 40.0% | |
| TGGTATCCTCTATAGCTGAT+TGG | - | chr3_3:75605619-75605638 | None:intergenic | 40.0% | |
| AGAGGATACCAAATCTGAAG+TGG | + | chr3_3:75605628-75605647 | Msa0473140:CDS | 40.0% | |
| TGTTGTGTCCACTTCAGATT+TGG | - | chr3_3:75605639-75605658 | None:intergenic | 40.0% | |
| ATATGAGCTTCTTGTGGTTG+AGG | - | chr3_3:75605780-75605799 | None:intergenic | 40.0% | |
| GGAATGACCAGAAAAGGTAA+AGG | + | chr3_3:75605839-75605858 | Msa0473140:CDS | 40.0% | |
| TTGCTAATAGCTCCTCGTAT+GGG | + | chr3_3:75605864-75605883 | Msa0473140:CDS | 40.0% | |
| GTGTTGGACAATACACAACA+TGG | + | chr3_3:75605968-75605987 | Msa0473140:CDS | 40.0% | |
| CACAACATGGTAATTCACGT+TGG | + | chr3_3:75605981-75606000 | Msa0473140:CDS | 40.0% | |
| CTTTCATAGCCTGATCTGTA+AGG | - | chr3_3:75606046-75606065 | None:intergenic | 40.0% | |
| TACAGATCAGGCTATGAAAG+TGG | + | chr3_3:75606046-75606065 | Msa0473140:CDS | 40.0% | |
| TCATCATGCACTCCATTTGA+TGG | - | chr3_3:75606076-75606095 | None:intergenic | 40.0% | |
| ATCAAATGGAGTGCATGATG+AGG | + | chr3_3:75606075-75606094 | Msa0473140:CDS | 40.0% | |
| TCAAATGGAGTGCATGATGA+GGG | + | chr3_3:75606076-75606095 | Msa0473140:CDS | 40.0% | |
| !!! | GAGAATGGTTTTGAAGTTGC+AGG | + | chr3_3:75606159-75606178 | Msa0473140:CDS | 40.0% |
| ACAAATGGAAGAGTTTCTGC+TGG | + | chr3_3:75606217-75606236 | Msa0473140:CDS | 40.0% | |
| TTCTGCTGGTGTATCTTACA+AGG | + | chr3_3:75606231-75606250 | Msa0473140:CDS | 40.0% | |
| TCTGCTGGTGTATCTTACAA+GGG | + | chr3_3:75606232-75606251 | Msa0473140:CDS | 40.0% | |
| !! | GGTATTGGTATGCAGAACTA+CGG | - | chr3_3:75606261-75606280 | None:intergenic | 40.0% |
| ! | CTTGTTGCTTCAGCTGAATA+AGG | - | chr3_3:75606397-75606416 | None:intergenic | 40.0% |
| AGAAGAATCTGCTAAGACAC+GGG | - | chr3_3:75606461-75606480 | None:intergenic | 40.0% | |
| GAGAAGAATCTGCTAAGACA+CGG | - | chr3_3:75606462-75606481 | None:intergenic | 40.0% | |
| TCATGTTGGAAATGAACACG+TGG | - | chr3_3:75606484-75606503 | None:intergenic | 40.0% | |
| ! | GCAACAATTTTGCACTGGAT+AGG | - | chr3_3:75606521-75606540 | None:intergenic | 40.0% |
| ! | GAAGAGCAACAATTTTGCAC+TGG | - | chr3_3:75606526-75606545 | None:intergenic | 40.0% |
| !! | TCTGTTTCACTGAAGCATTG+TGG | - | chr3_3:75606553-75606572 | None:intergenic | 40.0% |
| CTGTGGTGAGGAAATACTTA+AGG | + | chr3_3:75606599-75606618 | Msa0473140:CDS | 40.0% | |
| GTATGTCACAAGCTGAAATG+TGG | + | chr3_3:75606742-75606761 | Msa0473140:CDS | 40.0% | |
| CAAATTCATCCCTTGAATGG+TGG | + | chr3_3:75607021-75607040 | Msa0473140:CDS | 40.0% | |
| TTGAGCTAGGAGAGACATTT+GGG | - | chr3_3:75607059-75607078 | None:intergenic | 40.0% | |
| TTTGCCTTGAATGTTGAGCT+AGG | - | chr3_3:75607072-75607091 | None:intergenic | 40.0% | |
| ! | GTTGATTCATCTGTATCCGT+TGG | - | chr3_3:75607132-75607151 | None:intergenic | 40.0% |
| ACGGATACAGATGAATCAAC+TGG | + | chr3_3:75607132-75607151 | Msa0473140:CDS | 40.0% | |
| TTTCCTGGTTTCAGACATAC+TGG | - | chr3_3:75607166-75607185 | None:intergenic | 40.0% | |
| ! | CTTTTCTGCTGACAATTTCC+TGG | - | chr3_3:75607181-75607200 | None:intergenic | 40.0% |
| CAGGAAATTGTCAGCAGAAA+AGG | + | chr3_3:75607179-75607198 | Msa0473140:CDS | 40.0% | |
| GAAATTGTCAGCAGAAAAGG+AGG | + | chr3_3:75607182-75607201 | Msa0473140:CDS | 40.0% | |
| !!! | TGAAGAGTACCTTTTTGTGG+AGG | - | chr3_3:75607213-75607232 | None:intergenic | 40.0% |
| ACAGAATATCCTTGAGGCTC+TGG | - | chr3_3:75604287-75604306 | None:intergenic | 45.0% | |
| CAAGAAATCAATGCAGCTCC+TGG | + | chr3_3:75604837-75604856 | Msa0473140:CDS | 45.0% | |
| ! | ACAAGATCCGATGCTTTTCC+AGG | - | chr3_3:75604858-75604877 | None:intergenic | 45.0% |
| !!! | GCATCGGATCTTGTTTTTGC+AGG | + | chr3_3:75604864-75604883 | Msa0473140:CDS | 45.0% |
| GAAAACGTCAGGTTCTTCCT+CGG | + | chr3_3:75604904-75604923 | Msa0473140:CDS | 45.0% | |
| GCCTTCAAACTATCTTTCCG+AGG | - | chr3_3:75604924-75604943 | None:intergenic | 45.0% | |
| GGAAATGGTGAGTACAATGG+CGG | + | chr3_3:75604981-75605000 | Msa0473140:CDS | 45.0% | |
| GTTCACAGACGAAGAAGAAC+TGG | + | chr3_3:75605022-75605041 | Msa0473140:CDS | 45.0% | |
| ! | AGGCATAGAGTGTCCAACAA+AGG | + | chr3_3:75605080-75605099 | Msa0473140:CDS | 45.0% |
| ! | CATAGAGTGTCCAACAAAGG+TGG | + | chr3_3:75605083-75605102 | Msa0473140:CDS | 45.0% |
| CATCACTCACTGTGAGATTG+AGG | + | chr3_3:75605115-75605134 | Msa0473140:CDS | 45.0% | |
| GGATTTGCACCTTCTGTAAC+TGG | - | chr3_3:75605353-75605372 | None:intergenic | 45.0% | |
| ! | AGAAGGTGCAAATCCTGAAG+TGG | + | chr3_3:75605358-75605377 | Msa0473140:CDS | 45.0% |
| ! | CAGTTGGTACGAACCTTGAA+GGG | + | chr3_3:75605492-75605511 | Msa0473140:CDS | 45.0% |
| ! | AGTTGGTACGAACCTTGAAG+GGG | + | chr3_3:75605493-75605512 | Msa0473140:CDS | 45.0% |
| ! | TCTGAAGTGGACACAACAGA+AGG | + | chr3_3:75605641-75605660 | Msa0473140:CDS | 45.0% |
| AATGCTTACACCGTTGCTGA+AGG | + | chr3_3:75605818-75605837 | Msa0473140:CDS | 45.0% | |
| TCTGGTCATTCCTTCAGCAA+CGG | - | chr3_3:75605831-75605850 | None:intergenic | 45.0% | |
| GCTGAAGGAATGACCAGAAA+AGG | + | chr3_3:75605833-75605852 | Msa0473140:CDS | 45.0% | |
| ! | AGCAAGGCCTTTACCTTTTC+TGG | - | chr3_3:75605849-75605868 | None:intergenic | 45.0% |
| CATACGAGGAGCTATTAGCA+AGG | - | chr3_3:75605865-75605884 | None:intergenic | 45.0% | |
| CTTGCTAATAGCTCCTCGTA+TGG | + | chr3_3:75605863-75605882 | Msa0473140:CDS | 45.0% | |
| TGCTAATAGCTCCTCGTATG+GGG | + | chr3_3:75605865-75605884 | Msa0473140:CDS | 45.0% | |
| CTGTGCTGTCTTTCATGACA+TGG | - | chr3_3:75605934-75605953 | None:intergenic | 45.0% | |
| ! | GATCTGTAAGGCATTCTCGA+TGG | - | chr3_3:75606034-75606053 | None:intergenic | 45.0% |
| TCGAGAATGCCTTACAGATC+AGG | + | chr3_3:75606034-75606053 | Msa0473140:CDS | 45.0% | |
| CAAGACTCGCTATATGAGTG+AGG | + | chr3_3:75606192-75606211 | Msa0473140:CDS | 45.0% | |
| CTGCTGGTGTATCTTACAAG+GGG | + | chr3_3:75606233-75606252 | Msa0473140:CDS | 45.0% | |
| GAAGGTCATGGCTATGGTAT+TGG | - | chr3_3:75606276-75606295 | None:intergenic | 45.0% | |
| CATAGCCATGACCTTCATGA+GGG | + | chr3_3:75606280-75606299 | Msa0473140:CDS | 45.0% | |
| GAGAAAACCTTCCCTCATGA+AGG | - | chr3_3:75606294-75606313 | None:intergenic | 45.0% | |
| CTAAGACACGGGAACAACAA+TGG | - | chr3_3:75606450-75606469 | None:intergenic | 45.0% | |
| ! | TGGGTTTTGCAGGTGAATAC+TGG | - | chr3_3:75606924-75606943 | None:intergenic | 45.0% |
| GTTGAGCTAGGAGAGACATT+TGG | - | chr3_3:75607060-75607079 | None:intergenic | 45.0% | |
| CTCTCCTAGCTCAACATTCA+AGG | + | chr3_3:75607065-75607084 | Msa0473140:CDS | 45.0% | |
| GAGGTAAAGCCTCCACAAAA+AGG | + | chr3_3:75607201-75607220 | Msa0473140:CDS | 45.0% | |
| GCCCCTCTTATCACTTTACT+TGG | - | chr3_3:75607258-75607277 | None:intergenic | 45.0% | |
| GGAAGAAGTTGCCGGCATTT+AGG | - | chr3_3:75604266-75604285 | None:intergenic | 50.0% | |
| CAACTTCTTCCAGAGCCTCA+AGG | + | chr3_3:75604275-75604294 | Msa0473140:CDS | 50.0% | |
| !! | GTGTACAAGTGTGGTGGATG+TGG | + | chr3_3:75604305-75604324 | Msa0473140:CDS | 50.0% |
| ! | TGCAGCTCCTGGAAAAGCAT+CGG | + | chr3_3:75604848-75604867 | Msa0473140:CDS | 50.0% |
| GATAGGGGACAGACCTGAAA+TGG | + | chr3_3:75605232-75605251 | Msa0473140:CDS | 50.0% | |
| !! | GCAGATGCGGTGTTGATTTC+TGG | + | chr3_3:75605296-75605315 | Msa0473140:CDS | 50.0% |
| CCTTCAAGGTTCGTACCAAC+TGG | - | chr3_3:75605494-75605513 | None:intergenic | 50.0% | |
| ! | CCAGTTGGTACGAACCTTGA+AGG | + | chr3_3:75605491-75605510 | Msa0473140:CDS | 50.0% |
| AAATGGCCACAAGAGGGAGA+AGG | + | chr3_3:75605560-75605579 | Msa0473140:CDS | 50.0% | |
| TGTTCCAAGATCCCCATACG+AGG | - | chr3_3:75605879-75605898 | None:intergenic | 50.0% | |
| GATCAGGCTATGAAAGTGGC+AGG | + | chr3_3:75606050-75606069 | Msa0473140:CDS | 50.0% | |
| GAAAGTGGCAGGCCATCAAA+TGG | + | chr3_3:75606061-75606080 | Msa0473140:CDS | 50.0% | |
| CCTCATGAAGGTCATGGCTA+TGG | - | chr3_3:75606282-75606301 | None:intergenic | 50.0% | |
| CCATAGCCATGACCTTCATG+AGG | + | chr3_3:75606279-75606298 | Msa0473140:CDS | 50.0% | |
| ACCTTCCCTCATGAAGGTCA+TGG | - | chr3_3:75606288-75606307 | None:intergenic | 50.0% | |
| CGAGTACTTATGCCTTTGGC+GGG | - | chr3_3:75606368-75606387 | None:intergenic | 50.0% | |
| GCGAGTACTTATGCCTTTGG+CGG | - | chr3_3:75606369-75606388 | None:intergenic | 50.0% | |
| ! | GCCAAAGGCATAAGTACTCG+CGG | + | chr3_3:75606368-75606387 | Msa0473140:CDS | 50.0% |
| TCCGCGAGTACTTATGCCTT+TGG | - | chr3_3:75606372-75606391 | None:intergenic | 50.0% | |
| TAAGCGACATCACAAGCCAG+TGG | + | chr3_3:75606639-75606658 | Msa0473140:CDS | 50.0% | |
| AATCTGCAGGTAGCTGAAGC+AGG | - | chr3_3:75606705-75606724 | None:intergenic | 50.0% | |
| CACTAACCACCTCGCTTCTA+CGG | - | chr3_3:75606864-75606883 | None:intergenic | 50.0% | |
| TAATGCAATCGCGGCTCCAA+CGG | + | chr3_3:75607113-75607132 | Msa0473140:CDS | 50.0% | |
| CCTGGTTTCAGACATACTGG+AGG | - | chr3_3:75607163-75607182 | None:intergenic | 50.0% | |
| ! | CCTCCAGTATGTCTGAAACC+AGG | + | chr3_3:75607160-75607179 | Msa0473140:CDS | 50.0% |
| !! | GAGGCTCTGGAAGAAGTTGC+CGG | - | chr3_3:75604274-75604293 | None:intergenic | 55.0% |
| !! | GGATGTGGCACTGACCTTCA+AGG | + | chr3_3:75604320-75604339 | Msa0473140:CDS | 55.0% |
| GTCGCTAGAGGAAGCAGATG+CGG | + | chr3_3:75605283-75605302 | Msa0473140:CDS | 55.0% | |
| TCCTCTCCTTCTCCCTCTTG+TGG | - | chr3_3:75605569-75605588 | None:intergenic | 55.0% | |
| AGCTCCTCGTATGGGGATCT+TGG | + | chr3_3:75605872-75605891 | Msa0473140:CDS | 55.0% | |
| TCTTTCACACGACTCGCGTG+AGG | + | chr3_3:75606108-75606127 | Msa0473140:CDS | 55.0% | |
| GCCATGACCTTCATGAGGGA+AGG | + | chr3_3:75606284-75606303 | Msa0473140:CDS | 55.0% | |
| ATGGAATTGCGTCCCGCCAA+AGG | + | chr3_3:75606353-75606372 | Msa0473140:CDS | 55.0% | |
| ! | TCAGAGGCATAGGGCTACTG+TGG | + | chr3_3:75606582-75606601 | Msa0473140:CDS | 55.0% |
| CTACGGTGAAGCTCACGAGA+TGG | - | chr3_3:75606847-75606866 | None:intergenic | 55.0% | |
| TGAGCTTCACCGTAGAAGCG+AGG | + | chr3_3:75606852-75606871 | Msa0473140:CDS | 55.0% | |
| CGTAGAAGCGAGGTGGTTAG+TGG | + | chr3_3:75606862-75606881 | Msa0473140:CDS | 55.0% | |
| GCCACAAGAGGGAGAAGGAG+AGG | + | chr3_3:75605565-75605584 | Msa0473140:CDS | 60.0% | |
| GGCATAGGGCTACTGTGGTG+AGG | + | chr3_3:75606587-75606606 | Msa0473140:CDS | 60.0% | |
| CGACATCACAAGCCAGTGGC+AGG | + | chr3_3:75606643-75606662 | Msa0473140:CDS | 60.0% | |
| CATCACAAGCCAGTGGCAGG+TGG | + | chr3_3:75606646-75606665 | Msa0473140:CDS | 60.0% | |
| AAAGGAGCTCCACCTGCCAC+TGG | - | chr3_3:75606658-75606677 | None:intergenic | 60.0% | |
| GCTTCACCGTAGAAGCGAGG+TGG | + | chr3_3:75606855-75606874 | Msa0473140:CDS | 60.0% | |
| CTCGCGTGAGGACACTGACC+AGG | + | chr3_3:75606120-75606139 | Msa0473140:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 75604221 | 75607287 | 75604221 | ID=Msa0473140;Name=Msa0473140 |
| chr3_3 | mRNA | 75604221 | 75607287 | 75604221 | ID=Msa0473140-mRNA-1;Parent=Msa0473140;Name=Msa0473140-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|2|0|870 |
| chr3_3 | exon | 75604221 | 75604341 | 75604221 | ID=Msa0473140-mRNA-1:exon:19667;Parent=Msa0473140-mRNA-1 |
| chr3_3 | exon | 75604796 | 75607287 | 75604796 | ID=Msa0473140-mRNA-1:exon:19668;Parent=Msa0473140-mRNA-1 |
| chr3_3 | CDS | 75604221 | 75604341 | 75604221 | ID=Msa0473140-mRNA-1:cds;Parent=Msa0473140-mRNA-1 |
| chr3_3 | CDS | 75604796 | 75607287 | 75604796 | ID=Msa0473140-mRNA-1:cds;Parent=Msa0473140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
