AlfalfaGEDB | Msa0708290

M. sativa cultivar zhongmu-4 / Msa0708290

KEGG: -
GO: GO:0002229 GO:0002237 GO:0002239 GO:0002682 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009889 GO:0009987 GO:0010033 GO:0010112 GO:0010224 GO:0010337 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032350 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0043902 GO:0044424 GO:0044464 GO:0045088 GO:0046885 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071216 GO:0071219 GO:0080090 GO:0080134 GO:0080142 GO:0097159 GO:0098542 GO:0140110 GO:1900424 GO:1900426 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF07887.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0708290	RHN43745.1	94.262	488	26	2	1	487	72	558	0.0	941

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0708290	sp\|Q9C9T2\|SARD1_ARATH	48.832	428	195	11	1	420	1	412	3.89e-135	400

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0708290	A0A396GY37	94.262	488	26	2	1	487	72	558	0.0	941

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0013280	Msa0708290	0.828736	7.615014e-55	-8.615850e-47
Msa0062180	Msa0708290	0.806679	7.317928e-50	-8.615850e-47
Msa0091930	Msa0708290	0.833102	6.466780e-56	-8.615850e-47
Msa0106530	Msa0708290	0.841002	6.185706e-58	-8.615850e-47
Msa0235720	Msa0708290	0.821561	3.781024e-53	-8.615850e-47
Msa0314180	Msa0708290	0.822075	2.875240e-53	-8.615850e-47
Msa0377800	Msa0708290	0.845407	4.139988e-59	-8.615850e-47
Msa0426600	Msa0708290	0.825692	4.081031e-54	-8.615850e-47
Msa0466010	Msa0708290	0.840179	1.015839e-57	-8.615850e-47
Msa0472910	Msa0708290	0.835128	2.009204e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0708290	MtrunA17_Chr8g0391211	94.262	488	26	2	1	487	72	558	0.0	941
Msa0708290	MtrunA17_Chr8g0391221	87.789	475	54	4	1	473	1	473	0.0	825
Msa0708290	MtrunA17_Chr6g0484111	61.602	487	174	11	1	478	1	483	0.0	577
Msa0708290	MtrunA17_Chr6g0484131	62.190	484	168	12	1	478	1	475	0.0	572
Msa0708290	MtrunA17_Chr6g0484121	61.777	484	170	12	1	478	1	475	0.0	566
Msa0708290	MtrunA17_Chr2g0281171	45.052	384	199	5	4	384	16	390	7.92e-112	344
Msa0708290	MtrunA17_Chr4g0048161	45.573	384	197	5	4	384	15	389	6.10e-111	342
Msa0708290	MtrunA17_Chr4g0072691	47.619	357	181	4	31	384	4	357	1.13e-108	335
Msa0708290	MtrunA17_Chr2g0304831	41.920	427	226	8	30	440	34	454	7.66e-105	325
Msa0708290	MtrunA17_Chr4g0059411	48.418	316	153	5	12	326	8	314	5.50e-91	287

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0708290	AT1G73805.1	48.832	428	195	11	1	420	1	412	3.95e-136	400
Msa0708290	AT5G57580.1	47.804	387	186	7	3	384	12	387	2.80e-111	343
Msa0708290	AT4G25800.1	47.340	376	186	5	13	384	9	376	2.41e-109	337
Msa0708290	AT4G25800.2	47.340	376	186	5	13	384	9	376	2.41e-109	337
Msa0708290	AT2G18750.3	44.444	387	203	6	1	384	12	389	2.28e-106	330
Msa0708290	AT2G18750.2	44.444	387	203	6	1	384	12	389	2.28e-106	330
Msa0708290	AT2G18750.1	44.444	387	203	6	1	384	12	389	2.28e-106	330
Msa0708290	AT2G24300.2	42.857	385	211	5	4	384	3	382	2.90e-96	303
Msa0708290	AT2G24300.3	42.857	385	211	5	4	384	7	386	3.43e-96	303
Msa0708290	AT4G31000.1	43.514	370	195	7	17	382	21	380	1.21e-94	298

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Find 125 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATAGCGAGTATATCT+TGG	0.434635	4_4:-81787746	Msa0708290:three_prime_UTR
AACAAACGTTATGTCTACCG+TGG	0.654103	4_4:-81788570	Msa0708290:CDS
AACAATAACAATGGACAAAT+AGG	0.309111	4_4:-81787997	Msa0708290:CDS
AACATGAATTGAAAACTTAA+TGG	0.190103	4_4:+81790043	None:intergenic
AACGTTGCTTTGTTAACTCA+AGG	0.528420	4_4:-81788278	Msa0708290:intron
AAGGTTCCAAGCCAGAGAAA+AGG	0.490929	4_4:+81790370	None:intergenic
AATAGTGATGTGGGAAATGG+TGG	0.626558	4_4:+81787961	None:intergenic
AATATTGTGAAAGAGAGAAA+TGG	0.401290	4_4:-81789809	Msa0708290:CDS
AATGTGATTCTTGTTGACAA+AGG	0.567650	4_4:-81789953	Msa0708290:CDS
ACAATAACATCAGAGCAAGC+TGG	0.619100	4_4:-81790754	Msa0708290:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTATTGTTGGTGTAAGAAA+AGG	+	chr4_4:81787613-81787632	None:intergenic	30.0%
GAGTAATTAATGTACAGTAG+AGG	+	chr4_4:81787932-81787951	None:intergenic	30.0%
GGTAATAGGAGAAATTGTTA+TGG	-	chr4_4:81787970-81787989	Msa0708290:CDS	30.0%
ATATGATTAGGTGAATGAAG+AGG	-	chr4_4:81788233-81788252	Msa0708290:intron	30.0%
AATGTGATTCTTGTTGACAA+AGG	-	chr4_4:81788426-81788445	Msa0708290:intron	30.0%
TTTAATTCTCCTGTAAGCAA+TGG	+	chr4_4:81788603-81788622	None:intergenic	30.0%
TTAAATCTTACTATGAGGGA+TGG	-	chr4_4:81788618-81788637	Msa0708290:CDS	30.0%
CATGCTTGCATATAAATTCA+AGG	+	chr4_4:81788886-81788905	None:intergenic	30.0%
GTGATGCATACATATGAAAA+GGG	+	chr4_4:81789060-81789079	None:intergenic	30.0%
TGTGATGCATACATATGAAA+AGG	+	chr4_4:81789061-81789080	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	81787521	81790880	81787521	ID=Msa0708290;Name=Msa0708290
chr4_4	mRNA	81787521	81790880	81787521	ID=Msa0708290-mRNA-1;Parent=Msa0708290;Name=Msa0708290-mRNA-1;_AED=0.09;_eAED=0.09;_QI=146\|1\|1\|1\|1\|1\|7\|331\|487
chr4_4	exon	81787521	81788126	81787521	ID=Msa0708290-mRNA-1:exon:26913;Parent=Msa0708290-mRNA-1
chr4_4	exon	81788279	81788378	81788279	ID=Msa0708290-mRNA-1:exon:26912;Parent=Msa0708290-mRNA-1
chr4_4	exon	81788467	81788664	81788467	ID=Msa0708290-mRNA-1:exon:26911;Parent=Msa0708290-mRNA-1
chr4_4	exon	81788785	81788945	81788785	ID=Msa0708290-mRNA-1:exon:26910;Parent=Msa0708290-mRNA-1
chr4_4	exon	81789600	81790158	81789600	ID=Msa0708290-mRNA-1:exon:26909;Parent=Msa0708290-mRNA-1
chr4_4	exon	81790356	81790431	81790356	ID=Msa0708290-mRNA-1:exon:26908;Parent=Msa0708290-mRNA-1
chr4_4	exon	81790640	81790880	81790640	ID=Msa0708290-mRNA-1:exon:26907;Parent=Msa0708290-mRNA-1
chr4_4	five_prime_UTR	81790735	81790880	81790735	ID=Msa0708290-mRNA-1:five_prime_utr;Parent=Msa0708290-mRNA-1
chr4_4	CDS	81790640	81790734	81790640	ID=Msa0708290-mRNA-1:cds;Parent=Msa0708290-mRNA-1
chr4_4	CDS	81790356	81790431	81790356	ID=Msa0708290-mRNA-1:cds;Parent=Msa0708290-mRNA-1
chr4_4	CDS	81789600	81790158	81789600	ID=Msa0708290-mRNA-1:cds;Parent=Msa0708290-mRNA-1
chr4_4	CDS	81788785	81788945	81788785	ID=Msa0708290-mRNA-1:cds;Parent=Msa0708290-mRNA-1
chr4_4	CDS	81788467	81788664	81788467	ID=Msa0708290-mRNA-1:cds;Parent=Msa0708290-mRNA-1
chr4_4	CDS	81788279	81788378	81788279	ID=Msa0708290-mRNA-1:cds;Parent=Msa0708290-mRNA-1
chr4_4	CDS	81787852	81788126	81787852	ID=Msa0708290-mRNA-1:cds;Parent=Msa0708290-mRNA-1
chr4_4	three_prime_UTR	81787521	81787851	81787521	ID=Msa0708290-mRNA-1:three_prime_utr;Parent=Msa0708290-mRNA-1

Gene Sequence

>Msa0708290

ATGGTTGCAAAACGTTTTCTTGATGATTTTAATGAAGACAAAGTCAAACCAAACGACAAACGCATGAGAACTACGACAACATCTTCTTTTGCTTCGGTAATAGGAGAAATTGTTATGGTGAAAAACATGCAAAACCTTTTCTCTGGCTTGGAACCTTTACTTAGAAGAGTGGTGAATGAAGAGGTGGAAAGAGCAATGAGACAATGTTATCCACCACGATCAATAACAAAGTCACCTTCATTGAGACTTCAAGCAATGGAAGAACCATTAAGTTTTCAATTCATGTTCAAAAATAAACTTTCACTTCCAATATTCACCGGTAGTAGAATACTAGACATGGATGGAAACTCAATCAATGTGATTCTTGTTGACAAAGGCAATGACCAAATAGTCCCTACAAGTCTACCTCACCCAATCAAGATAGAAATTGTAGTTCTTGATGGAGATTTTCCTCATAGTAAAAAGGAATCATCATGGACTAGTGAGGAATTCAATAGCAATATTGTGAAAGAGAGAAATGGGAAAAGACCATTGCTTACAGGAGAATTAAATCTTACTATGAGGGATGGAATTGCACCAATTGGGGATATTGAGTTCACCGATAATTCTAGCTGGATACGTAGTAGAAAGTTTAGAGTTGCTGTTAGAATTGCTCCTGGGACTAATCAAAGTGTCCGAATTCGTGAAGGCATGACCGAAGCTTTTGTTGTTAAAGATCATCGCGGAGAATTGTACAAGAAACACCACCCACCAAATCTAAAGGACGAAGTGTGGCGTCTAGAGAAAATTGGTAAAGATGGAGCTTTCCACAAAAAATTGACCTCAAAAGGGATTACCACAGTGCAAGAGTTTCTCAAGTTGTCCGTAGTTGATCCTCATAGGCTCAGAAAGATTTTAGGCATTGGAATGTCAGAGAAAATGTGGGATGTGACAATTAAACATGCAAAGACTTGTGTAATGGGAAACAAACGTTATGTCTACCGTGGACCCCAATTTATCATCCATTTGAATGCAATATGCCAAATGGTTAGAGCTAACATCAATGGCCAAACCATTCCCATCCGAGACATTAACAACACATTGGGCAAGAGCTACATACAAAACTATGTGAGAGAAGCATATGCTAGATGGAATGAGTTGGAGGAAATTGATGAAGTTTTGAATGACAACGTTGCTTTGTTAACTCAAGGTGGAACCATGGATCAATTTCAAAGCAATAATCATCAAGGATCACTTATAACATATGATCAAAACAACTATTTTGGTGATACTCTCGAGACTGGCAACTATGTATCAAACAATAACAATGGACAAATAGGTTGCATCGAGGGGCCACCATTTCCCACATCACTATTCATGAATGGGATCATACCTTATAGCTTCTTAGATTCACAATCAGACGGTGGTGATCTAACGCCTTCAAGTTCAGGACCAATCATTGATAGAGCTTCAAGGTGGCATTAG

Protein sequence

>Msa0708290

MVAKRFLDDFNEDKVKPNDKRMRTTTTSSFASVIGEIVMVKNMQNLFSGLEPLLRRVVNEEVERAMRQCYPPRSITKSPSLRLQAMEEPLSFQFMFKNKLSLPIFTGSRILDMDGNSINVILVDKGNDQIVPTSLPHPIKIEIVVLDGDFPHSKKESSWTSEEFNSNIVKERNGKRPLLTGELNLTMRDGIAPIGDIEFTDNSSWIRSRKFRVAVRIAPGTNQSVRIREGMTEAFVVKDHRGELYKKHHPPNLKDEVWRLEKIGKDGAFHKKLTSKGITTVQEFLKLSVVDPHRLRKILGIGMSEKMWDVTIKHAKTCVMGNKRYVYRGPQFIIHLNAICQMVRANINGQTIPIRDINNTLGKSYIQNYVREAYARWNELEEIDEVLNDNVALLTQGGTMDQFQSNNHQGSLITYDQNNYFGDTLETGNYVSNNNNGQIGCIEGPPFPTSLFMNGIIPYSFLDSQSDGGDLTPSSSGPIIDRASRWH*