Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708290 | RHN43745.1 | 94.262 | 488 | 26 | 2 | 1 | 487 | 72 | 558 | 0.0 | 941 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708290 | sp|Q9C9T2|SARD1_ARATH | 48.832 | 428 | 195 | 11 | 1 | 420 | 1 | 412 | 3.89e-135 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708290 | A0A396GY37 | 94.262 | 488 | 26 | 2 | 1 | 487 | 72 | 558 | 0.0 | 941 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013280 | Msa0708290 | 0.828736 | 7.615014e-55 | -8.615850e-47 |
| Msa0062180 | Msa0708290 | 0.806679 | 7.317928e-50 | -8.615850e-47 |
| Msa0091930 | Msa0708290 | 0.833102 | 6.466780e-56 | -8.615850e-47 |
| Msa0106530 | Msa0708290 | 0.841002 | 6.185706e-58 | -8.615850e-47 |
| Msa0662580 | Msa0708290 | 0.809934 | 1.480036e-50 | -8.615850e-47 |
| Msa0708290 | Msa0708300 | 0.930340 | 1.889980e-93 | -8.615850e-47 |
| Msa0708290 | Msa0745070 | 0.812497 | 4.116002e-51 | -8.615850e-47 |
| Msa0708290 | Msa0780350 | 0.841689 | 4.080710e-58 | -8.615850e-47 |
| Msa0708290 | Msa0780450 | 0.809461 | 1.870951e-50 | -8.615850e-47 |
| Msa0708290 | Msa0834030 | 0.838895 | 2.190639e-57 | -8.615850e-47 |
| Msa0708290 | Msa0936530 | 0.806576 | 7.691134e-50 | -8.615850e-47 |
| Msa0708290 | Msa0936550 | 0.834312 | 3.223263e-56 | -8.615850e-47 |
| Msa0708290 | Msa0973520 | 0.804227 | 2.389916e-49 | -8.615850e-47 |
| Msa0708290 | Msa0982780 | 0.841443 | 4.737504e-58 | -8.615850e-47 |
| Msa0708290 | Msa1017160 | 0.827810 | 1.273273e-54 | -8.615850e-47 |
| Msa0708290 | Msa1236730 | 0.802183 | 6.330481e-49 | -8.615850e-47 |
| Msa0708290 | Msa1269660 | 0.814183 | 1.753743e-51 | -8.615850e-47 |
| Msa0708290 | Msa1317130 | 0.826038 | 3.376663e-54 | -8.615850e-47 |
| Msa0708290 | Msa1344890 | 0.803905 | 2.789393e-49 | -8.615850e-47 |
| Msa0708290 | Msa1353870 | 0.964356 | 3.180169e-123 | -8.615850e-47 |
| Msa0708290 | Msa1353880 | 0.927961 | 5.657654e-92 | -8.615850e-47 |
| Msa0708290 | Msa1405820 | 0.817336 | 3.476809e-52 | -8.615850e-47 |
| Msa0708290 | Msa1408180 | 0.807320 | 5.355657e-50 | -8.615850e-47 |
| Msa0708290 | Msa1448980 | 0.810807 | 9.591901e-51 | -8.615850e-47 |
| Msa0235720 | Msa0708290 | 0.821561 | 3.781024e-53 | -8.615850e-47 |
| Msa0377800 | Msa0708290 | 0.845407 | 4.139988e-59 | -8.615850e-47 |
| Msa0426600 | Msa0708290 | 0.825692 | 4.081031e-54 | -8.615850e-47 |
| Msa0466010 | Msa0708290 | 0.840179 | 1.015839e-57 | -8.615850e-47 |
| Msa0472910 | Msa0708290 | 0.835128 | 2.009204e-56 | -8.615850e-47 |
| Msa0314180 | Msa0708290 | 0.822075 | 2.875240e-53 | -8.615850e-47 |
| Msa0490380 | Msa0708290 | 0.831066 | 2.060853e-55 | -8.615850e-47 |
| Msa0517570 | Msa0708290 | 0.838418 | 2.909263e-57 | -8.615850e-47 |
| Msa0524440 | Msa0708290 | 0.804126 | 2.508509e-49 | -8.615850e-47 |
| Msa0574570 | Msa0708290 | 0.918010 | 2.637109e-86 | -8.615850e-47 |
| Msa0574580 | Msa0708290 | 0.845677 | 3.499373e-59 | -8.615850e-47 |
| Msa0580920 | Msa0708290 | 0.817680 | 2.907844e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708290 | MtrunA17_Chr8g0391211 | 94.262 | 488 | 26 | 2 | 1 | 487 | 72 | 558 | 0.0 | 941 |
| Msa0708290 | MtrunA17_Chr8g0391221 | 87.789 | 475 | 54 | 4 | 1 | 473 | 1 | 473 | 0.0 | 825 |
| Msa0708290 | MtrunA17_Chr6g0484111 | 61.602 | 487 | 174 | 11 | 1 | 478 | 1 | 483 | 0.0 | 577 |
| Msa0708290 | MtrunA17_Chr6g0484131 | 62.190 | 484 | 168 | 12 | 1 | 478 | 1 | 475 | 0.0 | 572 |
| Msa0708290 | MtrunA17_Chr6g0484121 | 61.777 | 484 | 170 | 12 | 1 | 478 | 1 | 475 | 0.0 | 566 |
| Msa0708290 | MtrunA17_Chr2g0281171 | 45.052 | 384 | 199 | 5 | 4 | 384 | 16 | 390 | 7.92e-112 | 344 |
| Msa0708290 | MtrunA17_Chr4g0048161 | 45.573 | 384 | 197 | 5 | 4 | 384 | 15 | 389 | 6.10e-111 | 342 |
| Msa0708290 | MtrunA17_Chr4g0072691 | 47.619 | 357 | 181 | 4 | 31 | 384 | 4 | 357 | 1.13e-108 | 335 |
| Msa0708290 | MtrunA17_Chr2g0304831 | 41.920 | 427 | 226 | 8 | 30 | 440 | 34 | 454 | 7.66e-105 | 325 |
| Msa0708290 | MtrunA17_Chr4g0059411 | 48.418 | 316 | 153 | 5 | 12 | 326 | 8 | 314 | 5.50e-91 | 287 |
| Msa0708290 | MtrunA17_Chr7g0271691 | 35.376 | 359 | 215 | 7 | 50 | 403 | 44 | 390 | 6.64e-56 | 194 |
| Msa0708290 | MtrunA17_Chr7g0271681 | 37.500 | 296 | 170 | 8 | 92 | 379 | 10 | 298 | 1.49e-44 | 163 |
| Msa0708290 | MtrunA17_Chr7g0271671 | 34.682 | 346 | 201 | 10 | 50 | 383 | 60 | 392 | 5.59e-44 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708290 | AT1G73805.1 | 48.832 | 428 | 195 | 11 | 1 | 420 | 1 | 412 | 3.95e-136 | 400 |
| Msa0708290 | AT5G57580.1 | 47.804 | 387 | 186 | 7 | 3 | 384 | 12 | 387 | 2.80e-111 | 343 |
| Msa0708290 | AT4G25800.1 | 47.340 | 376 | 186 | 5 | 13 | 384 | 9 | 376 | 2.41e-109 | 337 |
| Msa0708290 | AT4G25800.2 | 47.340 | 376 | 186 | 5 | 13 | 384 | 9 | 376 | 2.41e-109 | 337 |
| Msa0708290 | AT2G18750.3 | 44.444 | 387 | 203 | 6 | 1 | 384 | 12 | 389 | 2.28e-106 | 330 |
| Msa0708290 | AT2G18750.2 | 44.444 | 387 | 203 | 6 | 1 | 384 | 12 | 389 | 2.28e-106 | 330 |
| Msa0708290 | AT2G18750.1 | 44.444 | 387 | 203 | 6 | 1 | 384 | 12 | 389 | 2.28e-106 | 330 |
| Msa0708290 | AT2G24300.2 | 42.857 | 385 | 211 | 5 | 4 | 384 | 3 | 382 | 2.90e-96 | 303 |
| Msa0708290 | AT2G24300.3 | 42.857 | 385 | 211 | 5 | 4 | 384 | 7 | 386 | 3.43e-96 | 303 |
| Msa0708290 | AT4G31000.1 | 43.514 | 370 | 195 | 7 | 17 | 382 | 21 | 380 | 1.21e-94 | 298 |
| Msa0708290 | AT5G62570.1 | 39.387 | 424 | 227 | 10 | 19 | 436 | 21 | 420 | 2.44e-90 | 285 |
| Msa0708290 | AT5G62570.4 | 43.642 | 346 | 175 | 7 | 19 | 358 | 21 | 352 | 1.01e-89 | 279 |
| Msa0708290 | AT5G62570.2 | 39.100 | 422 | 233 | 9 | 21 | 436 | 2 | 405 | 1.32e-89 | 282 |
| Msa0708290 | AT2G24300.1 | 42.727 | 330 | 184 | 3 | 58 | 384 | 8 | 335 | 1.08e-84 | 271 |
| Msa0708290 | AT5G62570.3 | 44.027 | 293 | 148 | 6 | 19 | 309 | 21 | 299 | 2.10e-71 | 229 |
| Msa0708290 | AT4G31000.2 | 39.514 | 329 | 172 | 7 | 58 | 382 | 54 | 359 | 1.62e-70 | 234 |
| Msa0708290 | AT5G26920.3 | 35.695 | 367 | 204 | 10 | 29 | 385 | 24 | 368 | 1.41e-67 | 223 |
| Msa0708290 | AT5G26920.1 | 35.967 | 367 | 203 | 11 | 29 | 385 | 24 | 368 | 1.80e-66 | 224 |
| Msa0708290 | AT5G26920.2 | 35.695 | 367 | 196 | 12 | 29 | 385 | 24 | 360 | 1.83e-63 | 216 |
Find 125 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCAAATGGATGATAAAT+TGG | 0.135753 | 4_4:+81788544 | None:intergenic |
| TATGATCAAAACAACTATTT+TGG | 0.186437 | 4_4:-81788051 | Msa0708290:CDS |
| AACATGAATTGAAAACTTAA+TGG | 0.190103 | 4_4:+81790043 | None:intergenic |
| TCCTAAATTCTTTACCAAAA+TGG | 0.190760 | 4_4:-81790731 | Msa0708290:exon |
| TATTTGACGCAACCTTAAAA+TGG | 0.197207 | 4_4:+81787694 | None:intergenic |
| TATGGGCGTTGTTTCTCTTT+TGG | 0.207593 | 4_4:-81787673 | Msa0708290:three_prime_UTR |
| GTAGACTTGTAGGGACTATT+TGG | 0.242899 | 4_4:+81789924 | None:intergenic |
| AACAATAACAATGGACAAAT+AGG | 0.309111 | 4_4:-81787997 | Msa0708290:CDS |
| CCTACTCTCCACACTTGGTT+CGG | 0.317177 | 4_4:-81787618 | Msa0708290:three_prime_UTR |
| CACACTTCGTCCTTTAGATT+TGG | 0.320597 | 4_4:+81788903 | None:intergenic |
| ACTACAATTTCTATCTTGAT+TGG | 0.325646 | 4_4:+81789896 | None:intergenic |
| ATAGAAATTGTAGTTCTTGA+TGG | 0.327443 | 4_4:-81789887 | Msa0708290:CDS |
| TGAGAAAAGCAGAAGGTTCT+TGG | 0.334748 | 4_4:+81790857 | None:intergenic |
| ATTCTACTACCGGTGAATAT+TGG | 0.346627 | 4_4:+81790001 | None:intergenic |
| GTTCTCATGCGTTTGTCGTT+TGG | 0.353704 | 4_4:+81790664 | None:intergenic |
| ATTCAAATGGATGATAAATT+GGG | 0.356032 | 4_4:+81788545 | None:intergenic |
| CATGCAAAGACTTGTGTAAT+GGG | 0.357437 | 4_4:-81788594 | Msa0708290:CDS |
| GGGAAAAGACCATTGCTTAC+AGG | 0.362337 | 4_4:-81789788 | Msa0708290:CDS |
| CTACTCTCCACACTTGGTTC+GGG | 0.365181 | 4_4:-81787617 | Msa0708290:three_prime_UTR |
| TGTGAATCTAAGAAGCTATA+AGG | 0.365716 | 4_4:+81787922 | None:intergenic |
| TTCTCATGTGACAGGGTAAT+AGG | 0.366638 | 4_4:-81790423 | Msa0708290:intron |
| GATCTAACGCCTTCAAGTTC+AGG | 0.368265 | 4_4:-81787886 | Msa0708290:CDS |
| AGGGATGGAATTGCACCAAT+TGG | 0.372898 | 4_4:-81789746 | Msa0708290:CDS |
| GCTTGCTCTGATGTTATTGT+TGG | 0.374740 | 4_4:+81790757 | None:intergenic |
| ATTGGGTGAGGTAGACTTGT+AGG | 0.383658 | 4_4:+81789914 | None:intergenic |
| ACGTATCCAGCTAGAATTAT+CGG | 0.390207 | 4_4:+81789709 | None:intergenic |
| CGGTCATGCCTTCACGAATT+CGG | 0.392944 | 4_4:+81789633 | None:intergenic |
| TGATGTTAGCTCTAACCATT+TGG | 0.400701 | 4_4:+81788514 | None:intergenic |
| AATATTGTGAAAGAGAGAAA+TGG | 0.401290 | 4_4:-81789809 | Msa0708290:CDS |
| CTACAATTTCTATCTTGATT+GGG | 0.407874 | 4_4:+81789897 | None:intergenic |
| TTTGGCATATTGCATTCAAA+TGG | 0.408571 | 4_4:+81788532 | None:intergenic |
| TTTAAGGTTGCGTCAAATAT+GGG | 0.414284 | 4_4:-81787690 | Msa0708290:three_prime_UTR |
| CCCACATCACTATTCATGAA+TGG | 0.421363 | 4_4:-81787952 | Msa0708290:CDS |
| ATCTTTAACAACAAAAGCTT+CGG | 0.424400 | 4_4:+81789613 | None:intergenic |
| GGGATGGAATTGCACCAATT+GGG | 0.430451 | 4_4:-81789745 | Msa0708290:CDS |
| AAAATATAGCGAGTATATCT+TGG | 0.434635 | 4_4:-81787746 | Msa0708290:three_prime_UTR |
| GTGTGGCGTCTAGAGAAAAT+TGG | 0.434971 | 4_4:-81788885 | Msa0708290:CDS |
| GAGAATTAAATCTTACTATG+AGG | 0.442875 | 4_4:-81789766 | Msa0708290:CDS |
| TTCAGATTATATAATTCAAA+AGG | 0.445511 | 4_4:+81787545 | None:intergenic |
| CCACATCACTATTCATGAAT+GGG | 0.446633 | 4_4:-81787951 | Msa0708290:CDS |
| TGAGAGAAGCATATGCTAGA+TGG | 0.455078 | 4_4:-81788337 | Msa0708290:CDS |
| ATATTGTGAAAGAGAGAAAT+GGG | 0.455511 | 4_4:-81789808 | Msa0708290:CDS |
| ATTTGACGCAACCTTAAAAT+GGG | 0.463283 | 4_4:+81787695 | None:intergenic |
| ACATGCAAAGACTTGTGTAA+TGG | 0.464107 | 4_4:-81788595 | Msa0708290:CDS |
| CTTGAAGCTCTATCAATGAT+TGG | 0.465914 | 4_4:+81787862 | None:intergenic |
| CTAGAGAAAATTGGTAAAGA+TGG | 0.471632 | 4_4:-81788876 | Msa0708290:CDS |
| TTTGAATGCAATATGCCAAA+TGG | 0.472527 | 4_4:-81788529 | Msa0708290:CDS |
| CTTACCACTCTTCTAAGTAA+AGG | 0.474223 | 4_4:+81790351 | None:intergenic |
| ACTTCGTCCTTTAGATTTGG+TGG | 0.475388 | 4_4:+81788906 | None:intergenic |
| AAGGTTCCAAGCCAGAGAAA+AGG | 0.490929 | 4_4:+81790370 | None:intergenic |
| GTTATTGTTGGTGTAAGAAA+AGG | 0.496444 | 4_4:+81790769 | None:intergenic |
| CGAGACATTAACAACACATT+GGG | 0.498962 | 4_4:-81788471 | Msa0708290:CDS |
| TGTCTCGGATGGGAATGGTT+TGG | 0.499358 | 4_4:+81788487 | None:intergenic |
| TGTCCGTAGTTGATCCTCAT+AGG | 0.506873 | 4_4:-81788794 | Msa0708290:CDS |
| GGTAATAGGAGAAATTGTTA+TGG | 0.512172 | 4_4:-81790409 | Msa0708290:CDS |
| ATGATTGGTCCTGAACTTGA+AGG | 0.512823 | 4_4:+81787877 | None:intergenic |
| GTGAACTCAATATCCCCAAT+TGG | 0.516335 | 4_4:+81789731 | None:intergenic |
| ATGAATAGTGATGTGGGAAA+TGG | 0.517878 | 4_4:+81787958 | None:intergenic |
| ATTGCTTGAAGTCTCAATGA+AGG | 0.519319 | 4_4:+81790073 | None:intergenic |
| CGGACACTTTGATTAGTCCC+AGG | 0.523841 | 4_4:+81789653 | None:intergenic |
| ATTTCTATCTTGATTGGGTG+AGG | 0.527373 | 4_4:+81789902 | None:intergenic |
| AACGTTGCTTTGTTAACTCA+AGG | 0.528420 | 4_4:-81788278 | Msa0708290:intron |
| ATGGTTAGAGCTAACATCAA+TGG | 0.535787 | 4_4:-81788510 | Msa0708290:CDS |
| GGACAAATAGGTTGCATCGA+GGG | 0.538004 | 4_4:-81787985 | Msa0708290:CDS |
| TTTCAAAGCAATAATCATCA+AGG | 0.539152 | 4_4:-81788087 | Msa0708290:CDS |
| GTTGCTGTTAGAATTGCTCC+TGG | 0.539447 | 4_4:-81789671 | Msa0708290:CDS |
| TTTGGTGATACTCTCGAGAC+TGG | 0.541346 | 4_4:-81788033 | Msa0708290:CDS |
| TTAAATCTTACTATGAGGGA+TGG | 0.541822 | 4_4:-81789761 | Msa0708290:CDS |
| CATGTCTAGTATTCTACTAC+CGG | 0.542523 | 4_4:+81789991 | None:intergenic |
| AGTTCACCGATAATTCTAGC+TGG | 0.544574 | 4_4:-81789715 | Msa0708290:CDS |
| CTTTCACTTCCAATATTCAC+CGG | 0.544704 | 4_4:-81790010 | Msa0708290:CDS |
| CCAATGTGTTGTTAATGTCT+CGG | 0.546259 | 4_4:+81788472 | None:intergenic |
| TGCTAGATGGAATGAGTTGG+AGG | 0.547803 | 4_4:-81788324 | Msa0708290:CDS |
| CTTCGTCCTTTAGATTTGGT+GGG | 0.547859 | 4_4:+81788907 | None:intergenic |
| TTGGAATGTCAGAGAAAATG+TGG | 0.547888 | 4_4:-81788632 | Msa0708290:CDS |
| TTTAATTCTCCTGTAAGCAA+TGG | 0.551769 | 4_4:+81789779 | None:intergenic |
| CGTCCTTTAGATTTGGTGGG+TGG | 0.553800 | 4_4:+81788910 | None:intergenic |
| GTTAATGTCTCGGATGGGAA+TGG | 0.555065 | 4_4:+81788482 | None:intergenic |
| ACACCACCCACCAAATCTAA+AGG | 0.556569 | 4_4:-81788913 | Msa0708290:CDS |
| TTGGGTGAGGTAGACTTGTA+GGG | 0.558041 | 4_4:+81789915 | None:intergenic |
| AGAATTAAATCTTACTATGA+GGG | 0.564326 | 4_4:-81789765 | Msa0708290:CDS |
| ATTGCTTTGAAATTGATCCA+TGG | 0.565221 | 4_4:+81788098 | None:intergenic |
| AATGTGATTCTTGTTGACAA+AGG | 0.567650 | 4_4:-81789953 | Msa0708290:CDS |
| TTCATTGAGACTTCAAGCAA+TGG | 0.568410 | 4_4:-81790071 | Msa0708290:CDS |
| CAATCATTGATAGAGCTTCA+AGG | 0.569919 | 4_4:-81787861 | Msa0708290:CDS |
| TTCATAACCCGAACCAAGTG+TGG | 0.570016 | 4_4:+81787610 | None:intergenic |
| CCGAACCAAGTGTGGAGAGT+AGG | 0.571536 | 4_4:+81787618 | None:intergenic |
| CGGTAGTAGAATACTAGACA+TGG | 0.574833 | 4_4:-81789990 | Msa0708290:CDS |
| GGATGGAATTGCACCAATTG+GGG | 0.580908 | 4_4:-81789744 | Msa0708290:CDS |
| TGTACCTTTCTGAGCCTATG+AGG | 0.581097 | 4_4:+81788780 | None:intergenic |
| GGATGATAAATTGGGGTCCA+CGG | 0.583121 | 4_4:+81788553 | None:intergenic |
| TATGTATCAAACAATAACAA+TGG | 0.588692 | 4_4:-81788006 | Msa0708290:CDS |
| CCGAGACATTAACAACACAT+TGG | 0.589170 | 4_4:-81788472 | Msa0708290:CDS |
| GACAAATAGGTTGCATCGAG+GGG | 0.589199 | 4_4:-81787984 | Msa0708290:CDS |
| CCATTCATGAATAGTGATGT+GGG | 0.592181 | 4_4:+81787952 | None:intergenic |
| GGAACCTTTACTTAGAAGAG+TGG | 0.595523 | 4_4:-81790355 | Msa0708290:intron |
| TTCTTAGATTCACAATCAGA+CGG | 0.596172 | 4_4:-81787913 | Msa0708290:CDS |
| GGTGACTTTGTTATTGATCG+TGG | 0.600634 | 4_4:+81790094 | None:intergenic |
| CAAATCTAAAGGACGAAGTG+TGG | 0.604899 | 4_4:-81788902 | Msa0708290:CDS |
| TGATCCTCATAGGCTCAGAA+AGG | 0.607583 | 4_4:-81788784 | Msa0708290:intron |
| TGTGTTGTTAATGTCTCGGA+TGG | 0.608686 | 4_4:+81788476 | None:intergenic |
| CCCATTCATGAATAGTGATG+TGG | 0.612706 | 4_4:+81787951 | None:intergenic |
| ATATGCTAGATGGAATGAGT+TGG | 0.618437 | 4_4:-81788327 | Msa0708290:CDS |
| ACAATAACATCAGAGCAAGC+TGG | 0.619100 | 4_4:-81790754 | Msa0708290:five_prime_UTR |
| GACTTTGTTATTGATCGTGG+TGG | 0.621283 | 4_4:+81790097 | None:intergenic |
| AGTAGAATACTAGACATGGA+TGG | 0.625124 | 4_4:-81789986 | Msa0708290:CDS |
| TTCAAATGGATGATAAATTG+GGG | 0.625219 | 4_4:+81788546 | None:intergenic |
| TTGCTGTTAGAATTGCTCCT+GGG | 0.625923 | 4_4:-81789670 | Msa0708290:CDS |
| TGATTAGGTGAATGAAGAGG+TGG | 0.626231 | 4_4:-81790143 | Msa0708290:intron |
| TCACTCTACAGGTGGAACCA+TGG | 0.626249 | 4_4:-81788115 | Msa0708290:intron |
| CAAAGTGTCCGAATTCGTGA+AGG | 0.626320 | 4_4:-81789641 | Msa0708290:CDS |
| AATAGTGATGTGGGAAATGG+TGG | 0.626558 | 4_4:+81787961 | None:intergenic |
| GGAATCATCATGGACTAGTG+AGG | 0.638853 | 4_4:-81789843 | Msa0708290:CDS |
| CATTAACAACACATTGGGCA+AGG | 0.650846 | 4_4:-81788466 | Msa0708290:intron |
| AACAAACGTTATGTCTACCG+TGG | 0.654103 | 4_4:-81788570 | Msa0708290:CDS |
| GAGCCTATGAGGATCAACTA+CGG | 0.659771 | 4_4:+81788791 | None:intergenic |
| ATATGATTAGGTGAATGAAG+AGG | 0.685589 | 4_4:-81790146 | Msa0708290:intron |
| TGTAAGAAAAGGTTGCAGTG+AGG | 0.686980 | 4_4:+81790780 | None:intergenic |
| TGGACAAATAGGTTGCATCG+AGG | 0.690086 | 4_4:-81787986 | Msa0708290:CDS |
| TTAGATTCACAATCAGACGG+TGG | 0.697439 | 4_4:-81787910 | Msa0708290:CDS |
| TGGAATGTCAGAGAAAATGT+GGG | 0.706104 | 4_4:-81788631 | Msa0708290:CDS |
| GTGTTGTTAATGTCTCGGAT+GGG | 0.715548 | 4_4:+81788477 | None:intergenic |
| CTTGAGAAACTCTTGCACTG+TGG | 0.740612 | 4_4:+81788818 | None:intergenic |
| TTTGTTGTTAAAGATCATCG+CGG | 0.765249 | 4_4:-81789605 | Msa0708290:CDS |
| TCATTGATAGAGCTTCAAGG+TGG | 0.769312 | 4_4:-81787858 | Msa0708290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATAATAAAATGAATATT+GGG | + | chr4_4:81787797-81787816 | None:intergenic | 10.0% |
| !! | TTCTATTTATATATATGATT+AGG | - | chr4_4:81788221-81788240 | Msa0708290:intron | 10.0% |
| !!! | TTTTTGTTTAGTTTATTTTA+AGG | - | chr4_4:81789202-81789221 | Msa0708290:intron | 10.0% |
| !! | AAAATAAGTTAATGTTTATA+TGG | - | chr4_4:81789702-81789721 | Msa0708290:CDS | 10.0% |
| !! | GAACATAATAAAATGAATAT+TGG | + | chr4_4:81787798-81787817 | None:intergenic | 15.0% |
| !! | TTAATTTCATTTCGAAATTA+TGG | + | chr4_4:81788070-81788089 | None:intergenic | 15.0% |
| !! | TGATAAATTTAATTAAGGTA+TGG | + | chr4_4:81788099-81788118 | None:intergenic | 15.0% |
| !! | GTTTCTGATAAATTTAATTA+AGG | + | chr4_4:81788104-81788123 | None:intergenic | 15.0% |
| !! | AGATTGATTATAATATGTAT+AGG | - | chr4_4:81788913-81788932 | Msa0708290:CDS | 15.0% |
| !!! | TATTTTTATGTTTTCTTTCT+TGG | - | chr4_4:81788953-81788972 | Msa0708290:intron | 15.0% |
| !!! | TTCAATTAGAAATTTACTTT+TGG | + | chr4_4:81790187-81790206 | None:intergenic | 15.0% |
| !! | TTCAGATTATATAATTCAAA+AGG | + | chr4_4:81790837-81790856 | None:intergenic | 15.0% |
| !!! | TGTAAACATTTTCATATTGA+AGG | + | chr4_4:81788196-81788215 | None:intergenic | 20.0% |
| !! | AACATGAATTGAAAACTTAA+TGG | + | chr4_4:81788339-81788358 | None:intergenic | 20.0% |
| !! | AGAATTAAATCTTACTATGA+GGG | - | chr4_4:81788614-81788633 | Msa0708290:CDS | 20.0% |
| !! | TTGGTCAAATTAATATGAAT+AGG | - | chr4_4:81788972-81788991 | Msa0708290:intron | 20.0% |
| !! | ACACATCAATGTTTAATTAA+AGG | + | chr4_4:81789133-81789152 | None:intergenic | 20.0% |
| !! | GGTTGTTAAGATATAAATAA+AGG | - | chr4_4:81789223-81789242 | Msa0708290:intron | 20.0% |
| !! | ATATAAATAAAGGATTAGAG+AGG | - | chr4_4:81789233-81789252 | Msa0708290:intron | 20.0% |
| !! | TATAAATAAAGGATTAGAGA+GGG | - | chr4_4:81789234-81789253 | Msa0708290:intron | 20.0% |
| !! | ATTCAAATGGATGATAAATT+GGG | + | chr4_4:81789837-81789856 | None:intergenic | 20.0% |
| !! | AAAAATCAATGCATAGAAAA+AGG | + | chr4_4:81789976-81789995 | None:intergenic | 20.0% |
| !! | GCAAATTAAATGAACTATAT+AGG | + | chr4_4:81790001-81790020 | None:intergenic | 20.0% |
| !!! | TATGATCAAAACAACTATTT+TGG | - | chr4_4:81790328-81790347 | Msa0708290:intron | 20.0% |
| !! | TATGTATCAAACAATAACAA+TGG | - | chr4_4:81790373-81790392 | Msa0708290:CDS | 20.0% |
| !! | AAATCGAAAAGAAAAAATGT+AGG | - | chr4_4:81790790-81790809 | Msa0708290:five_prime_UTR | 20.0% |
| !! | AATCGAAAAGAAAAAATGTA+GGG | - | chr4_4:81790791-81790810 | Msa0708290:five_prime_UTR | 20.0% |
| !! | TTTTATATGAGAAAAGCAGA+AGG | + | chr4_4:81787532-81787551 | None:intergenic | 25.0% |
| ! | TCCTAAATTCTTTACCAAAA+TGG | - | chr4_4:81787648-81787667 | Msa0708290:three_prime_UTR | 25.0% |
| !!! | ACCATTTTGGTAAAGAATTT+AGG | + | chr4_4:81787652-81787671 | None:intergenic | 25.0% |
| ! | GAAATTATGGTAAAGTTGAA+TGG | + | chr4_4:81788057-81788076 | None:intergenic | 25.0% |
| ! | CTACAATTTCTATCTTGATT+GGG | + | chr4_4:81788485-81788504 | None:intergenic | 25.0% |
| ! | ACTACAATTTCTATCTTGAT+TGG | + | chr4_4:81788486-81788505 | None:intergenic | 25.0% |
| ! | ATAGAAATTGTAGTTCTTGA+TGG | - | chr4_4:81788492-81788511 | Msa0708290:CDS | 25.0% |
| !! | AGATTTTCCTCATAGTAAAA+AGG | - | chr4_4:81788515-81788534 | Msa0708290:CDS | 25.0% |
| ! | ATAGTAAAAAGGAATCATCA+TGG | - | chr4_4:81788526-81788545 | Msa0708290:CDS | 25.0% |
| ! | AATATTGTGAAAGAGAGAAA+TGG | - | chr4_4:81788570-81788589 | Msa0708290:CDS | 25.0% |
| ! | ATATTGTGAAAGAGAGAAAT+GGG | - | chr4_4:81788571-81788590 | Msa0708290:CDS | 25.0% |
| ! | GAGAATTAAATCTTACTATG+AGG | - | chr4_4:81788613-81788632 | Msa0708290:CDS | 25.0% |
| ! | ATCTTTAACAACAAAAGCTT+CGG | + | chr4_4:81788769-81788788 | None:intergenic | 25.0% |
| !!! | TTTATTTCTGTGTTCTTTCT+TGG | - | chr4_4:81789011-81789030 | Msa0708290:intron | 25.0% |
| ! | GCTGTTAATTAACAATTAGT+TGG | - | chr4_4:81789164-81789183 | Msa0708290:intron | 25.0% |
| ! | ACACAATTATAGGACTAAAA+AGG | + | chr4_4:81789295-81789314 | None:intergenic | 25.0% |
| ! | ATTCTTTCTGACACAATTAT+AGG | + | chr4_4:81789305-81789324 | None:intergenic | 25.0% |
| !!! | GAATTATGTTATTTCCACAT+TGG | - | chr4_4:81789321-81789340 | Msa0708290:intron | 25.0% |
| ! | AAGATATAACAAACCAACTA+TGG | + | chr4_4:81789375-81789394 | None:intergenic | 25.0% |
| !!! | ATAGTTGGTTTGTTATATCT+TGG | - | chr4_4:81789374-81789393 | Msa0708290:intron | 25.0% |
| ! | ACAAAAAATTGACCTCAAAA+GGG | - | chr4_4:81789534-81789553 | Msa0708290:intron | 25.0% |
| ! | GTTATGAATGTGTCAATAAA+TGG | - | chr4_4:81789665-81789684 | Msa0708290:CDS | 25.0% |
| ! | TTCAAATGGATGATAAATTG+GGG | + | chr4_4:81789836-81789855 | None:intergenic | 25.0% |
| ! | CATTCAAATGGATGATAAAT+TGG | + | chr4_4:81789838-81789857 | None:intergenic | 25.0% |
| ! | TTTCAAAGCAATAATCATCA+AGG | - | chr4_4:81790292-81790311 | Msa0708290:intron | 25.0% |
| ! | AACAATAACAATGGACAAAT+AGG | - | chr4_4:81790382-81790401 | Msa0708290:CDS | 25.0% |
| ! | AAAATATAGCGAGTATATCT+TGG | - | chr4_4:81790633-81790652 | Msa0708290:intron | 25.0% |
| !!! | TTTTAGTTAAGCCCATTTTA+AGG | - | chr4_4:81790673-81790692 | Msa0708290:CDS | 25.0% |
| GTTATTGTTGGTGTAAGAAA+AGG | + | chr4_4:81787613-81787632 | None:intergenic | 30.0% | |
| ! | AAAACGTTTTGCAACCATTT+TGG | + | chr4_4:81787665-81787684 | None:intergenic | 30.0% |
| ! | TGAATATTGGGTTGTTTGAT+TGG | + | chr4_4:81787785-81787804 | None:intergenic | 30.0% |
| GAGTAATTAATGTACAGTAG+AGG | + | chr4_4:81787932-81787951 | None:intergenic | 30.0% | |
| GGTAATAGGAGAAATTGTTA+TGG | - | chr4_4:81787970-81787989 | Msa0708290:CDS | 30.0% | |
| ATATGATTAGGTGAATGAAG+AGG | - | chr4_4:81788233-81788252 | Msa0708290:intron | 30.0% | |
| AATGTGATTCTTGTTGACAA+AGG | - | chr4_4:81788426-81788445 | Msa0708290:intron | 30.0% | |
| ! | GATGATTCCTTTTTACTATG+AGG | + | chr4_4:81788525-81788544 | None:intergenic | 30.0% |
| TTTAATTCTCCTGTAAGCAA+TGG | + | chr4_4:81788603-81788622 | None:intergenic | 30.0% | |
| TTAAATCTTACTATGAGGGA+TGG | - | chr4_4:81788618-81788637 | Msa0708290:CDS | 30.0% | |
| !! | TTTGTTGTTAAAGATCATCG+CGG | - | chr4_4:81788774-81788793 | Msa0708290:intron | 30.0% |
| CATGCTTGCATATAAATTCA+AGG | + | chr4_4:81788886-81788905 | None:intergenic | 30.0% | |
| GTGATGCATACATATGAAAA+GGG | + | chr4_4:81789060-81789079 | None:intergenic | 30.0% | |
| TGTGATGCATACATATGAAA+AGG | + | chr4_4:81789061-81789080 | None:intergenic | 30.0% | |
| AGTTAACTAATCTAGTTACC+TGG | - | chr4_4:81789085-81789104 | Msa0708290:intron | 30.0% | |
| TAACAAACCAACTATGGAAA+GGG | + | chr4_4:81789369-81789388 | None:intergenic | 30.0% | |
| ATAACAAACCAACTATGGAA+AGG | + | chr4_4:81789370-81789389 | None:intergenic | 30.0% | |
| !! | GGTTTGTTATATCTTGGTTA+AGG | - | chr4_4:81789380-81789399 | Msa0708290:intron | 30.0% |
| CTAGAGAAAATTGGTAAAGA+TGG | - | chr4_4:81789503-81789522 | Msa0708290:intron | 30.0% | |
| !!! | CTTTTGAGGTCAATTTTTTG+TGG | + | chr4_4:81789535-81789554 | None:intergenic | 30.0% |
| CACAAAAAATTGACCTCAAA+AGG | - | chr4_4:81789533-81789552 | Msa0708290:intron | 30.0% | |
| ! | TGGTATTGCAATCAGATTTT+AGG | - | chr4_4:81789722-81789741 | Msa0708290:CDS | 30.0% |
| TTTGGCATATTGCATTCAAA+TGG | + | chr4_4:81789850-81789869 | None:intergenic | 30.0% | |
| TTTGAATGCAATATGCCAAA+TGG | - | chr4_4:81789850-81789869 | Msa0708290:CDS | 30.0% | |
| TAGAAAAAGGTAGAAGTAGA+AGG | + | chr4_4:81789963-81789982 | None:intergenic | 30.0% | |
| ! | TTTTATGAATCTCACTCTAC+AGG | - | chr4_4:81790253-81790272 | Msa0708290:intron | 30.0% |
| !! | ATTGCTTTGAAATTGATCCA+TGG | + | chr4_4:81790284-81790303 | None:intergenic | 30.0% |
| TGTGAATCTAAGAAGCTATA+AGG | + | chr4_4:81790460-81790479 | None:intergenic | 30.0% | |
| TTCTTAGATTCACAATCAGA+CGG | - | chr4_4:81790466-81790485 | Msa0708290:intron | 30.0% | |
| CAAAACACATGAAAAAGTAG+CGG | - | chr4_4:81790581-81790600 | Msa0708290:intron | 30.0% | |
| ATTTGACGCAACCTTAAAAT+GGG | + | chr4_4:81790687-81790706 | None:intergenic | 30.0% | |
| TATTTGACGCAACCTTAAAA+TGG | + | chr4_4:81790688-81790707 | None:intergenic | 30.0% | |
| !!! | TTTTAAGGTTGCGTCAAATA+TGG | - | chr4_4:81790688-81790707 | Msa0708290:CDS | 30.0% |
| ! | TTTAAGGTTGCGTCAAATAT+GGG | - | chr4_4:81790689-81790708 | Msa0708290:CDS | 30.0% |
| ! | AAAAAATGTAGGGTGTTTGA+GGG | - | chr4_4:81790801-81790820 | Msa0708290:five_prime_UTR | 30.0% |
| !! | GGGTTGTTTGATTGGTTTAA+GGG | + | chr4_4:81787777-81787796 | None:intergenic | 35.0% |
| !! | TGGGTTGTTTGATTGGTTTA+AGG | + | chr4_4:81787778-81787797 | None:intergenic | 35.0% |
| ! | AACATGCAAAACCTTTTCTC+TGG | - | chr4_4:81787998-81788017 | Msa0708290:CDS | 35.0% |
| CTTACCACTCTTCTAAGTAA+AGG | + | chr4_4:81788031-81788050 | None:intergenic | 35.0% | |
| ATTGCTTGAAGTCTCAATGA+AGG | + | chr4_4:81788309-81788328 | None:intergenic | 35.0% | |
| TTCATTGAGACTTCAAGCAA+TGG | - | chr4_4:81788308-81788327 | Msa0708290:CDS | 35.0% | |
| CTTTCACTTCCAATATTCAC+CGG | - | chr4_4:81788369-81788388 | Msa0708290:intron | 35.0% | |
| ATTCTACTACCGGTGAATAT+TGG | + | chr4_4:81788381-81788400 | None:intergenic | 35.0% | |
| CATGTCTAGTATTCTACTAC+CGG | + | chr4_4:81788391-81788410 | None:intergenic | 35.0% | |
| AGTAGAATACTAGACATGGA+TGG | - | chr4_4:81788393-81788412 | Msa0708290:intron | 35.0% | |
| ATTTCTATCTTGATTGGGTG+AGG | + | chr4_4:81788480-81788499 | None:intergenic | 35.0% | |
| ACGTATCCAGCTAGAATTAT+CGG | + | chr4_4:81788673-81788692 | None:intergenic | 35.0% | |
| TATTTCCACATTGGTACCAT+AGG | - | chr4_4:81789330-81789349 | Msa0708290:intron | 35.0% | |
| GGGTGAAAATAAAATGCCTA+TGG | + | chr4_4:81789349-81789368 | None:intergenic | 35.0% | |
| ! | ATTTTCACCCTTTCCATAGT+TGG | - | chr4_4:81789359-81789378 | Msa0708290:intron | 35.0% |
| ! | TGCAATCAGATTTTAGGCAT+TGG | - | chr4_4:81789728-81789747 | Msa0708290:CDS | 35.0% |
| TTGGAATGTCAGAGAAAATG+TGG | - | chr4_4:81789747-81789766 | Msa0708290:CDS | 35.0% | |
| TGGAATGTCAGAGAAAATGT+GGG | - | chr4_4:81789748-81789767 | Msa0708290:CDS | 35.0% | |
| ACATGCAAAGACTTGTGTAA+TGG | - | chr4_4:81789784-81789803 | Msa0708290:CDS | 35.0% | |
| CATGCAAAGACTTGTGTAAT+GGG | - | chr4_4:81789785-81789804 | Msa0708290:CDS | 35.0% | |
| !! | TGATGTTAGCTCTAACCATT+TGG | + | chr4_4:81789868-81789887 | None:intergenic | 35.0% |
| ATGGTTAGAGCTAACATCAA+TGG | - | chr4_4:81789869-81789888 | Msa0708290:CDS | 35.0% | |
| ! | CCAATGTGTTGTTAATGTCT+CGG | + | chr4_4:81789910-81789929 | None:intergenic | 35.0% |
| CGAGACATTAACAACACATT+GGG | - | chr4_4:81789908-81789927 | Msa0708290:CDS | 35.0% | |
| ATATGCTAGATGGAATGAGT+TGG | - | chr4_4:81790052-81790071 | Msa0708290:CDS | 35.0% | |
| ! | AACGTTGCTTTGTTAACTCA+AGG | - | chr4_4:81790101-81790120 | Msa0708290:CDS | 35.0% |
| ATGAATAGTGATGTGGGAAA+TGG | + | chr4_4:81790424-81790443 | None:intergenic | 35.0% | |
| CCATTCATGAATAGTGATGT+GGG | + | chr4_4:81790430-81790449 | None:intergenic | 35.0% | |
| CCACATCACTATTCATGAAT+GGG | - | chr4_4:81790428-81790447 | Msa0708290:intron | 35.0% | |
| CTTGAAGCTCTATCAATGAT+TGG | + | chr4_4:81790520-81790539 | None:intergenic | 35.0% | |
| CAATCATTGATAGAGCTTCA+AGG | - | chr4_4:81790518-81790537 | Msa0708290:intron | 35.0% | |
| ! | GAAAAAATGTAGGGTGTTTG+AGG | - | chr4_4:81790800-81790819 | Msa0708290:five_prime_UTR | 35.0% |
| TGAGAAAAGCAGAAGGTTCT+TGG | + | chr4_4:81787525-81787544 | None:intergenic | 40.0% | |
| TGTAAGAAAAGGTTGCAGTG+AGG | + | chr4_4:81787602-81787621 | None:intergenic | 40.0% | |
| GCTTGCTCTGATGTTATTGT+TGG | + | chr4_4:81787625-81787644 | None:intergenic | 40.0% | |
| ACAATAACATCAGAGCAAGC+TGG | - | chr4_4:81787625-81787644 | Msa0708290:three_prime_UTR | 40.0% | |
| ACTCTCAATTCTCATGTGAC+AGG | - | chr4_4:81787948-81787967 | Msa0708290:CDS | 40.0% | |
| CTCTCAATTCTCATGTGACA+GGG | - | chr4_4:81787949-81787968 | Msa0708290:CDS | 40.0% | |
| TTCTCATGTGACAGGGTAAT+AGG | - | chr4_4:81787956-81787975 | Msa0708290:CDS | 40.0% | |
| GGAACCTTTACTTAGAAGAG+TGG | - | chr4_4:81788024-81788043 | Msa0708290:CDS | 40.0% | |
| TGATTAGGTGAATGAAGAGG+TGG | - | chr4_4:81788236-81788255 | Msa0708290:intron | 40.0% | |
| !! | GACTTTGTTATTGATCGTGG+TGG | + | chr4_4:81788285-81788304 | None:intergenic | 40.0% |
| !! | GGTGACTTTGTTATTGATCG+TGG | + | chr4_4:81788288-81788307 | None:intergenic | 40.0% |
| CGGTAGTAGAATACTAGACA+TGG | - | chr4_4:81788389-81788408 | Msa0708290:intron | 40.0% | |
| GTAGACTTGTAGGGACTATT+TGG | + | chr4_4:81788458-81788477 | None:intergenic | 40.0% | |
| GTGAACTCAATATCCCCAAT+TGG | + | chr4_4:81788651-81788670 | None:intergenic | 40.0% | |
| AGTTCACCGATAATTCTAGC+TGG | - | chr4_4:81788664-81788683 | Msa0708290:intron | 40.0% | |
| ! | TTGCTGTTAGAATTGCTCCT+GGG | - | chr4_4:81788709-81788728 | Msa0708290:intron | 40.0% |
| ! | TTAAAGGTGCAATTACCACC+AGG | + | chr4_4:81789117-81789136 | None:intergenic | 40.0% |
| !! | AAAGAAAAGCATCCAGTTCC+AGG | - | chr4_4:81789264-81789283 | Msa0708290:intron | 40.0% |
| !! | AAGAAAAGCATCCAGTTCCA+GGG | - | chr4_4:81789265-81789284 | Msa0708290:intron | 40.0% |
| AAATGCCTATGGTACCAATG+TGG | + | chr4_4:81789338-81789357 | None:intergenic | 40.0% | |
| ! | CTTCGTCCTTTAGATTTGGT+GGG | + | chr4_4:81789475-81789494 | None:intergenic | 40.0% |
| ACTTCGTCCTTTAGATTTGG+TGG | + | chr4_4:81789476-81789495 | None:intergenic | 40.0% | |
| CACACTTCGTCCTTTAGATT+TGG | + | chr4_4:81789479-81789498 | None:intergenic | 40.0% | |
| CAAATCTAAAGGACGAAGTG+TGG | - | chr4_4:81789477-81789496 | Msa0708290:intron | 40.0% | |
| AACAAACGTTATGTCTACCG+TGG | - | chr4_4:81789809-81789828 | Msa0708290:CDS | 40.0% | |
| ! | GTGTTGTTAATGTCTCGGAT+GGG | + | chr4_4:81789905-81789924 | None:intergenic | 40.0% |
| ! | TGTGTTGTTAATGTCTCGGA+TGG | + | chr4_4:81789906-81789925 | None:intergenic | 40.0% |
| CCGAGACATTAACAACACAT+TGG | - | chr4_4:81789907-81789926 | Msa0708290:CDS | 40.0% | |
| CATTAACAACACATTGGGCA+AGG | - | chr4_4:81789913-81789932 | Msa0708290:CDS | 40.0% | |
| ! | TGAGAGAAGCATATGCTAGA+TGG | - | chr4_4:81790042-81790061 | Msa0708290:CDS | 40.0% |
| TATGAATCTCACTCTACAGG+TGG | - | chr4_4:81790256-81790275 | Msa0708290:intron | 40.0% | |
| AATAGTGATGTGGGAAATGG+TGG | + | chr4_4:81790421-81790440 | None:intergenic | 40.0% | |
| CCCACATCACTATTCATGAA+TGG | - | chr4_4:81790427-81790446 | Msa0708290:intron | 40.0% | |
| CCCATTCATGAATAGTGATG+TGG | + | chr4_4:81790431-81790450 | None:intergenic | 40.0% | |
| TTAGATTCACAATCAGACGG+TGG | - | chr4_4:81790469-81790488 | Msa0708290:intron | 40.0% | |
| ! | ATGATTGGTCCTGAACTTGA+AGG | + | chr4_4:81790505-81790524 | None:intergenic | 40.0% |
| TCATTGATAGAGCTTCAAGG+TGG | - | chr4_4:81790521-81790540 | Msa0708290:intron | 40.0% | |
| ACACATGAAAAAGTAGCGGT+TGG | - | chr4_4:81790585-81790604 | Msa0708290:intron | 40.0% | |
| !!! | TATGGGCGTTGTTTCTCTTT+TGG | - | chr4_4:81790706-81790725 | Msa0708290:CDS | 40.0% |
| GTTCTCATGCGTTTGTCGTT+TGG | + | chr4_4:81787718-81787737 | None:intergenic | 45.0% | |
| ! | GCAAAACCTTTTCTCTGGCT+TGG | - | chr4_4:81788003-81788022 | Msa0708290:CDS | 45.0% |
| AAGGTTCCAAGCCAGAGAAA+AGG | + | chr4_4:81788012-81788031 | None:intergenic | 45.0% | |
| TTGGGTGAGGTAGACTTGTA+GGG | + | chr4_4:81788467-81788486 | None:intergenic | 45.0% | |
| ATTGGGTGAGGTAGACTTGT+AGG | + | chr4_4:81788468-81788487 | None:intergenic | 45.0% | |
| !! | GGAATCATCATGGACTAGTG+AGG | - | chr4_4:81788536-81788555 | Msa0708290:CDS | 45.0% |
| GGGAAAAGACCATTGCTTAC+AGG | - | chr4_4:81788591-81788610 | Msa0708290:CDS | 45.0% | |
| AGGGATGGAATTGCACCAAT+TGG | - | chr4_4:81788633-81788652 | Msa0708290:CDS | 45.0% | |
| GGGATGGAATTGCACCAATT+GGG | - | chr4_4:81788634-81788653 | Msa0708290:CDS | 45.0% | |
| GGATGGAATTGCACCAATTG+GGG | - | chr4_4:81788635-81788654 | Msa0708290:CDS | 45.0% | |
| ! | GTTGCTGTTAGAATTGCTCC+TGG | - | chr4_4:81788708-81788727 | Msa0708290:intron | 45.0% |
| ! | CAAAGTGTCCGAATTCGTGA+AGG | - | chr4_4:81788738-81788757 | Msa0708290:intron | 45.0% |
| CTAGTTACCTGGTATGTACC+TGG | - | chr4_4:81789096-81789115 | Msa0708290:intron | 45.0% | |
| ATTACCACCAGGTACATACC+AGG | + | chr4_4:81789106-81789125 | None:intergenic | 45.0% | |
| AAAAAGGTTGACCCTGGAAC+TGG | + | chr4_4:81789279-81789298 | None:intergenic | 45.0% | |
| AGGACTAAAAAGGTTGACCC+TGG | + | chr4_4:81789285-81789304 | None:intergenic | 45.0% | |
| ACACCACCCACCAAATCTAA+AGG | - | chr4_4:81789466-81789485 | Msa0708290:intron | 45.0% | |
| GTGTGGCGTCTAGAGAAAAT+TGG | - | chr4_4:81789494-81789513 | Msa0708290:intron | 45.0% | |
| ! | CACTGTGGTAATCCCTTTTG+AGG | + | chr4_4:81789549-81789568 | None:intergenic | 45.0% |
| CTTGAGAAACTCTTGCACTG+TGG | + | chr4_4:81789564-81789583 | None:intergenic | 45.0% | |
| TGTCCGTAGTTGATCCTCAT+AGG | - | chr4_4:81789585-81789604 | Msa0708290:intron | 45.0% | |
| GAGCCTATGAGGATCAACTA+CGG | + | chr4_4:81789591-81789610 | None:intergenic | 45.0% | |
| TGATCCTCATAGGCTCAGAA+AGG | - | chr4_4:81789595-81789614 | Msa0708290:intron | 45.0% | |
| TGTACCTTTCTGAGCCTATG+AGG | + | chr4_4:81789602-81789621 | None:intergenic | 45.0% | |
| GGATGATAAATTGGGGTCCA+CGG | + | chr4_4:81789829-81789848 | None:intergenic | 45.0% | |
| GTTAATGTCTCGGATGGGAA+TGG | + | chr4_4:81789900-81789919 | None:intergenic | 45.0% | |
| ! | TGCTAGATGGAATGAGTTGG+AGG | - | chr4_4:81790055-81790074 | Msa0708290:CDS | 45.0% |
| ! | TTTGGTGATACTCTCGAGAC+TGG | - | chr4_4:81790346-81790365 | Msa0708290:intron | 45.0% |
| TGGACAAATAGGTTGCATCG+AGG | - | chr4_4:81790393-81790412 | Msa0708290:CDS | 45.0% | |
| GGACAAATAGGTTGCATCGA+GGG | - | chr4_4:81790394-81790413 | Msa0708290:CDS | 45.0% | |
| GACAAATAGGTTGCATCGAG+GGG | - | chr4_4:81790395-81790414 | Msa0708290:CDS | 45.0% | |
| ! | GATCTAACGCCTTCAAGTTC+AGG | - | chr4_4:81790493-81790512 | Msa0708290:intron | 45.0% |
| ! | CTTTTCCTACTCTCCACACT+TGG | - | chr4_4:81790756-81790775 | Msa0708290:five_prime_UTR | 45.0% |
| TTCATAACCCGAACCAAGTG+TGG | + | chr4_4:81790772-81790791 | None:intergenic | 45.0% | |
| ! | CGGACACTTTGATTAGTCCC+AGG | + | chr4_4:81788729-81788748 | None:intergenic | 50.0% |
| CGGTCATGCCTTCACGAATT+CGG | + | chr4_4:81788749-81788768 | None:intergenic | 50.0% | |
| GTTACCTGGTATGTACCTGG+TGG | - | chr4_4:81789099-81789118 | Msa0708290:intron | 50.0% | |
| !! | CGTCCTTTAGATTTGGTGGG+TGG | + | chr4_4:81789472-81789491 | None:intergenic | 50.0% |
| TGTCTCGGATGGGAATGGTT+TGG | + | chr4_4:81789895-81789914 | None:intergenic | 50.0% | |
| TCACTCTACAGGTGGAACCA+TGG | - | chr4_4:81790264-81790283 | Msa0708290:intron | 50.0% | |
| CCTACTCTCCACACTTGGTT+CGG | - | chr4_4:81790761-81790780 | Msa0708290:five_prime_UTR | 50.0% | |
| CTACTCTCCACACTTGGTTC+GGG | - | chr4_4:81790762-81790781 | Msa0708290:five_prime_UTR | 50.0% | |
| CCGAACCAAGTGTGGAGAGT+AGG | + | chr4_4:81790764-81790783 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 81787521 | 81790880 | 81787521 | ID=Msa0708290;Name=Msa0708290 |
| chr4_4 | mRNA | 81787521 | 81790880 | 81787521 | ID=Msa0708290-mRNA-1;Parent=Msa0708290;Name=Msa0708290-mRNA-1;_AED=0.09;_eAED=0.09;_QI=146|1|1|1|1|1|7|331|487 |
| chr4_4 | exon | 81787521 | 81788126 | 81787521 | ID=Msa0708290-mRNA-1:exon:26913;Parent=Msa0708290-mRNA-1 |
| chr4_4 | exon | 81788279 | 81788378 | 81788279 | ID=Msa0708290-mRNA-1:exon:26912;Parent=Msa0708290-mRNA-1 |
| chr4_4 | exon | 81788467 | 81788664 | 81788467 | ID=Msa0708290-mRNA-1:exon:26911;Parent=Msa0708290-mRNA-1 |
| chr4_4 | exon | 81788785 | 81788945 | 81788785 | ID=Msa0708290-mRNA-1:exon:26910;Parent=Msa0708290-mRNA-1 |
| chr4_4 | exon | 81789600 | 81790158 | 81789600 | ID=Msa0708290-mRNA-1:exon:26909;Parent=Msa0708290-mRNA-1 |
| chr4_4 | exon | 81790356 | 81790431 | 81790356 | ID=Msa0708290-mRNA-1:exon:26908;Parent=Msa0708290-mRNA-1 |
| chr4_4 | exon | 81790640 | 81790880 | 81790640 | ID=Msa0708290-mRNA-1:exon:26907;Parent=Msa0708290-mRNA-1 |
| chr4_4 | five_prime_UTR | 81790735 | 81790880 | 81790735 | ID=Msa0708290-mRNA-1:five_prime_utr;Parent=Msa0708290-mRNA-1 |
| chr4_4 | CDS | 81790640 | 81790734 | 81790640 | ID=Msa0708290-mRNA-1:cds;Parent=Msa0708290-mRNA-1 |
| chr4_4 | CDS | 81790356 | 81790431 | 81790356 | ID=Msa0708290-mRNA-1:cds;Parent=Msa0708290-mRNA-1 |
| chr4_4 | CDS | 81789600 | 81790158 | 81789600 | ID=Msa0708290-mRNA-1:cds;Parent=Msa0708290-mRNA-1 |
| chr4_4 | CDS | 81788785 | 81788945 | 81788785 | ID=Msa0708290-mRNA-1:cds;Parent=Msa0708290-mRNA-1 |
| chr4_4 | CDS | 81788467 | 81788664 | 81788467 | ID=Msa0708290-mRNA-1:cds;Parent=Msa0708290-mRNA-1 |
| chr4_4 | CDS | 81788279 | 81788378 | 81788279 | ID=Msa0708290-mRNA-1:cds;Parent=Msa0708290-mRNA-1 |
| chr4_4 | CDS | 81787852 | 81788126 | 81787852 | ID=Msa0708290-mRNA-1:cds;Parent=Msa0708290-mRNA-1 |
| chr4_4 | three_prime_UTR | 81787521 | 81787851 | 81787521 | ID=Msa0708290-mRNA-1:three_prime_utr;Parent=Msa0708290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
