Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065110 | XP_003590123.1 | 100.000 | 239 | 0 | 0 | 1 | 239 | 1 | 239 | 3.13e-173 | 486 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065110 | sp|Q9FJA6|RS33_ARATH | 88.841 | 233 | 26 | 0 | 1 | 233 | 1 | 233 | 2.08e-152 | 426 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065110 | B7FH64 | 100.000 | 239 | 0 | 0 | 1 | 239 | 1 | 239 | 1.49e-173 | 486 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0065110 | 0.818788 | 1.632571e-52 | -8.615850e-47 |
| Msa0003330 | Msa0065110 | 0.857707 | 1.359104e-62 | -8.615850e-47 |
| Msa0027590 | Msa0065110 | 0.808133 | 3.597107e-50 | -8.615850e-47 |
| Msa0065110 | Msa0075350 | 0.813252 | 2.812794e-51 | -8.615850e-47 |
| Msa0065110 | Msa0191450 | 0.811969 | 5.364916e-51 | -8.615850e-47 |
| Msa0065110 | Msa0191550 | 0.809536 | 1.802592e-50 | -8.615850e-47 |
| Msa0065110 | Msa0194940 | 0.801552 | 8.530730e-49 | -8.615850e-47 |
| Msa0065110 | Msa0481520 | 0.832624 | 8.498350e-56 | -8.615850e-47 |
| Msa0065110 | Msa0573550 | 0.812264 | 4.626945e-51 | -8.615850e-47 |
| Msa0065110 | Msa0591050 | 0.803432 | 3.496782e-49 | -8.615850e-47 |
| Msa0065110 | Msa0705800 | 0.801099 | 1.056376e-48 | -8.615850e-47 |
| Msa0065110 | Msa0758420 | 0.808299 | 3.315344e-50 | -8.615850e-47 |
| Msa0065110 | Msa0822580 | 0.817398 | 3.367332e-52 | -8.615850e-47 |
| Msa0065110 | Msa1418770 | 0.813575 | 2.387817e-51 | -8.615850e-47 |
| Msa0065110 | Msa1446410 | 0.824015 | 1.014806e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065110 | MtrunA17_Chr1g0168341 | 100.000 | 239 | 0 | 0 | 1 | 239 | 1 | 239 | 2.88e-177 | 486 |
| Msa0065110 | MtrunA17_Chr1g0155631 | 99.582 | 239 | 1 | 0 | 1 | 239 | 1 | 239 | 4.92e-177 | 485 |
| Msa0065110 | MtrunA17_Chr6g0469891 | 94.444 | 234 | 8 | 1 | 5 | 238 | 1 | 229 | 1.04e-162 | 449 |
| Msa0065110 | MtrunA17_Chr6g0469871 | 94.444 | 234 | 8 | 1 | 5 | 238 | 1 | 229 | 1.04e-162 | 449 |
| Msa0065110 | MtrunA17_Chr1g0210251 | 86.383 | 235 | 31 | 1 | 1 | 234 | 1 | 235 | 4.02e-150 | 417 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065110 | AT5G35530.1 | 88.841 | 233 | 26 | 0 | 1 | 233 | 1 | 233 | 2.12e-153 | 426 |
| Msa0065110 | AT2G31610.1 | 88.987 | 227 | 25 | 0 | 1 | 227 | 1 | 227 | 4.58e-149 | 416 |
| Msa0065110 | AT3G53870.1 | 92.166 | 217 | 17 | 0 | 1 | 217 | 1 | 217 | 1.53e-148 | 414 |
Find 100 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGGGCCCTGCTTTCCTTT+AGG | 0.246468 | 1_2:-26932053 | None:intergenic |
| GTCCTTAAACTTCATGGATT+TGG | 0.270682 | 1_2:-26931790 | None:intergenic |
| AGCCAAATCCATGAAGTTTA+AGG | 0.287873 | 1_2:+26931788 | Msa0065110:CDS |
| GTTATTCCGGTGTTGAGGTT+AGG | 0.312781 | 1_2:+26929892 | Msa0065110:CDS |
| ATACCCGTCCTTAAACTTCA+TGG | 0.316389 | 1_2:-26931796 | None:intergenic |
| GTGTGAATGGTGACAATATC+AGG | 0.336609 | 1_2:-26932086 | None:intergenic |
| CAGACACATCGCTAATTAAA+AGG | 0.350186 | 1_2:-26932221 | None:intergenic |
| CTCTTCCTTTGGAGTGTGAA+TGG | 0.357277 | 1_2:-26932099 | None:intergenic |
| ATAATATAATCTGAAATAAA+CGG | 0.362952 | 1_2:+26929562 | Msa0065110:five_prime_UTR |
| ATGTACTCCTCCTCTTCCTT+TGG | 0.368386 | 1_2:-26932110 | None:intergenic |
| CTTGCTGAGGATGGTTATTC+CGG | 0.378503 | 1_2:+26929879 | Msa0065110:CDS |
| TCAAAACATTCTCAAACAAC+AGG | 0.380005 | 1_2:-26932182 | None:intergenic |
| TTTGTGTTGTAGGGTGTTCT+CGG | 0.388366 | 1_2:+26931999 | Msa0065110:intron |
| TAAACTAACTAACCTGTCTA+AGG | 0.395840 | 1_2:-26931878 | None:intergenic |
| GAGTCAATGTAATCCTTAAC+AGG | 0.402767 | 1_2:-26931837 | None:intergenic |
| TTCTTATGTGTGTGGAGAAA+TGG | 0.406211 | 1_2:-26929620 | None:intergenic |
| TTATTCCGGTGTTGAGGTTA+GGG | 0.409497 | 1_2:+26929893 | Msa0065110:CDS |
| CCATGTTTGCAGATTTAGCT+AGG | 0.422376 | 1_2:-26929690 | None:intergenic |
| GGGACTTTGCGCCATTGCTC+AGG | 0.427213 | 1_2:+26930550 | Msa0065110:CDS |
| CTCCACACACATAAGAAACT+AGG | 0.431348 | 1_2:+26929626 | Msa0065110:five_prime_UTR |
| ACGCTGAGAAGGTCAACAAC+AGG | 0.438336 | 1_2:+26930528 | Msa0065110:CDS |
| TAATATAATCTGAAATAAAC+GGG | 0.440020 | 1_2:+26929563 | Msa0065110:five_prime_UTR |
| TCACCTCAGTGGTGCAGAAA+AGG | 0.446152 | 1_2:+26930474 | Msa0065110:CDS |
| AGGTTAAGATCATGCTTGAC+TGG | 0.451430 | 1_2:+26932027 | Msa0065110:CDS |
| AATGAACATAAATATGTTAG+TGG | 0.458859 | 1_2:-26932450 | None:intergenic |
| CATCAGGCCTGCTGCTGTTG+TGG | 0.461102 | 1_2:+26932130 | Msa0065110:CDS |
| CTCGTCCGGACAACCTGTTA+AGG | 0.466411 | 1_2:+26931824 | Msa0065110:CDS |
| TGCGCACTGAGATCATCATC+AGG | 0.467489 | 1_2:+26929925 | Msa0065110:CDS |
| AGGAAGAGGAGGAGTACATC+AGG | 0.468833 | 1_2:+26932114 | Msa0065110:CDS |
| ATTTCTTTCAGGGCCTGCTA+TGG | 0.473754 | 1_2:+26931602 | Msa0065110:intron |
| TTGTTATGTATAGGTGAGAA+AGG | 0.475222 | 1_2:+26930434 | Msa0065110:intron |
| CATTCTCAAACAACAGGGAC+TGG | 0.486079 | 1_2:-26932176 | None:intergenic |
| ACTCGTACCCAAGCTGTTCT+CGG | 0.490767 | 1_2:+26929951 | Msa0065110:CDS |
| ACCATCCTCAGCAAGCTCTC+TGG | 0.491889 | 1_2:-26929871 | None:intergenic |
| TATGTATAGGTGAGAAAGGA+AGG | 0.493443 | 1_2:+26930438 | Msa0065110:intron |
| CATGTTTGCAGATTTAGCTA+GGG | 0.497744 | 1_2:-26929689 | None:intergenic |
| GACAGGAACCTCAATATCAT+TGG | 0.498151 | 1_2:-26932153 | None:intergenic |
| CTGGGATCCTAAAGGAAAGC+AGG | 0.500050 | 1_2:+26932046 | Msa0065110:CDS |
| GTAATCCTTAACAGGTTGTC+CGG | 0.503308 | 1_2:-26931829 | None:intergenic |
| TAAAGCTCAACACTGTTCTC+AGG | 0.503525 | 1_2:-26930506 | None:intergenic |
| ACCAGAGAGCTTGCTGAGGA+TGG | 0.504066 | 1_2:+26929870 | Msa0065110:CDS |
| CAAACAACAGGGACTGGGAC+AGG | 0.510606 | 1_2:-26932170 | None:intergenic |
| GTAGGGTGTTCTCGGTATCA+AGG | 0.512546 | 1_2:+26932007 | Msa0065110:intron |
| TCATTGGCCACAACAGCAGC+AGG | 0.512718 | 1_2:-26932137 | None:intergenic |
| TGATGATCTCAGTGCGCATA+GGG | 0.514210 | 1_2:-26929920 | None:intergenic |
| CAGACATGTTCTCCTTAGAC+AGG | 0.518852 | 1_2:+26931866 | Msa0065110:CDS |
| AAACCTCAACACACCATAGC+AGG | 0.520448 | 1_2:-26931615 | None:intergenic |
| GACGGGTATATGATCTCGTC+CGG | 0.524013 | 1_2:+26931810 | Msa0065110:CDS |
| TGAGTTACCGAGAACAGCTT+GGG | 0.525457 | 1_2:-26929958 | None:intergenic |
| TCCACACACATAAGAAACTA+GGG | 0.529478 | 1_2:+26929627 | Msa0065110:five_prime_UTR |
| AAGAGACTCGGCCTGAGCAA+TGG | 0.529687 | 1_2:-26930561 | None:intergenic |
| TTTCTTCGCTGAATTGAATG+AGG | 0.530015 | 1_2:+26929842 | Msa0065110:CDS |
| ATGAGTTACCGAGAACAGCT+TGG | 0.534831 | 1_2:-26929959 | None:intergenic |
| GGCGTGTGCATAGTTAACTA+AGG | 0.535712 | 1_2:-26929586 | None:intergenic |
| CATGTGCAGGTTATTGTCAG+TGG | 0.538199 | 1_2:+26931747 | Msa0065110:intron |
| AAAACAAACCTCGCATCCCT+TGG | 0.539366 | 1_2:-26931654 | None:intergenic |
| ATGAACATAAATATGTTAGT+GGG | 0.544012 | 1_2:-26932449 | None:intergenic |
| GTGGAGAAATGGTTGTAGAC+AGG | 0.544786 | 1_2:-26929609 | None:intergenic |
| CCTAGCTAAATCTGCAAACA+TGG | 0.546408 | 1_2:+26929690 | Msa0065110:exon |
| TTGAGGTTTGTCATGGAAAG+TGG | 0.550123 | 1_2:+26931629 | Msa0065110:CDS |
| CGCTGAGAAGGTCAACAACA+GGG | 0.550500 | 1_2:+26930529 | Msa0065110:CDS |
| ATGCTTGACTGGGATCCTAA+AGG | 0.556783 | 1_2:+26932038 | Msa0065110:CDS |
| TGTTGTGGCCAATGATATTG+AGG | 0.558726 | 1_2:+26932145 | Msa0065110:CDS |
| TTGTTGCAGTTCGTCGCTGA+CGG | 0.560423 | 1_2:+26929816 | Msa0065110:intron |
| ATGATGATCTCAGTGCGCAT+AGG | 0.560609 | 1_2:-26929921 | None:intergenic |
| TCGGAGGTCTTGCTGTTCGA+AGG | 0.563501 | 1_2:+26930597 | Msa0065110:CDS |
| GGATGGTTATTCCGGTGTTG+AGG | 0.564051 | 1_2:+26929887 | Msa0065110:CDS |
| AATCCATGAAGTTTAAGGAC+GGG | 0.568256 | 1_2:+26931793 | Msa0065110:CDS |
| TGTCATGGAAAGTGGTGCCA+AGG | 0.570166 | 1_2:+26931637 | Msa0065110:CDS |
| GGGCCTGCTATGGTGTGTTG+AGG | 0.572929 | 1_2:+26931612 | Msa0065110:intron |
| CATTCACACTCCAAAGGAAG+AGG | 0.584530 | 1_2:+26932100 | Msa0065110:CDS |
| TGGTGTGTTGAGGTTTGTCA+TGG | 0.586163 | 1_2:+26931622 | Msa0065110:CDS |
| TGTTGAGCTTTACGCTGAGA+AGG | 0.587026 | 1_2:+26930517 | Msa0065110:CDS |
| ATTCTCAAACAACAGGGACT+GGG | 0.596133 | 1_2:-26932175 | None:intergenic |
| ATGTTTGCAGATTTAGCTAG+GGG | 0.598120 | 1_2:-26929688 | None:intergenic |
| GGTTAAGATCATGCTTGACT+GGG | 0.599204 | 1_2:+26932028 | Msa0065110:CDS |
| AATGGTGACAATATCAGGGA+GGG | 0.600476 | 1_2:-26932081 | None:intergenic |
| TCTCTTCGCTATAAGCTGCT+CGG | 0.607585 | 1_2:+26930578 | Msa0065110:CDS |
| TGGGATCCTAAAGGAAAGCA+GGG | 0.609284 | 1_2:+26932047 | Msa0065110:CDS |
| ACCCTAGTTTCTTATGTGTG+TGG | 0.613262 | 1_2:-26929628 | None:intergenic |
| CAGCTTATAGCGAAGAGACT+CGG | 0.624190 | 1_2:-26930573 | None:intergenic |
| TCACACTCCAAAGGAAGAGG+AGG | 0.628998 | 1_2:+26932103 | Msa0065110:CDS |
| AAATCCATGAAGTTTAAGGA+CGG | 0.630532 | 1_2:+26931792 | Msa0065110:CDS |
| GTCATGGAAAGTGGTGCCAA+GGG | 0.643243 | 1_2:+26931638 | Msa0065110:CDS |
| TTTGCAGATTTAGCTAGGGG+CGG | 0.644446 | 1_2:-26929685 | None:intergenic |
| TGTGAATGGTGACAATATCA+GGG | 0.645355 | 1_2:-26932085 | None:intergenic |
| AAGTGGTGCCAAGGGATGCG+AGG | 0.645586 | 1_2:+26931646 | Msa0065110:CDS |
| TGGAGAAATGGTTGTAGACA+GGG | 0.653285 | 1_2:-26929608 | None:intergenic |
| ATGGTGACAATATCAGGGAG+GGG | 0.658335 | 1_2:-26932080 | None:intergenic |
| TGTCACCATTCACACTCCAA+AGG | 0.659904 | 1_2:+26932094 | Msa0065110:CDS |
| GCGCACTGAGATCATCATCA+GGG | 0.670424 | 1_2:+26929926 | Msa0065110:CDS |
| TTTAACCAGAGAGCTTGCTG+AGG | 0.680011 | 1_2:+26929866 | Msa0065110:CDS |
| CAAAACATTCTCAAACAACA+GGG | 0.680476 | 1_2:-26932181 | None:intergenic |
| GCTGAGAAGGTCAACAACAG+GGG | 0.681641 | 1_2:+26930530 | Msa0065110:CDS |
| GGTAACCCTAACCTCAACAC+CGG | 0.686278 | 1_2:-26929898 | None:intergenic |
| AATTAGAGAGCTCACCTCAG+TGG | 0.694866 | 1_2:+26930463 | Msa0065110:CDS |
| GGAGAAATGGTTGTAGACAG+GGG | 0.700999 | 1_2:-26929607 | None:intergenic |
| CTTCGCTATAAGCTGCTCGG+AGG | 0.714309 | 1_2:+26930581 | Msa0065110:CDS |
| GAATGGTGACAATATCAGGG+AGG | 0.719800 | 1_2:-26932082 | None:intergenic |
| GATGATCTCAGTGCGCATAG+GGG | 0.725882 | 1_2:-26929919 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATATAATCTGAAATAAA+CGG | + | chr1_2:26929562-26929581 | Msa0065110:five_prime_UTR | 10.0% |
| !! | TTTCAAAGTTAAATATTATT+AGG | + | chr1_2:26930696-26930715 | Msa0065110:intron | 10.0% |
| !!! | TAATATAATCTGAAATAAAC+GGG | + | chr1_2:26929563-26929582 | Msa0065110:five_prime_UTR | 15.0% |
| !!! | GTTTATTTTTGTTTCATTTT+CGG | + | chr1_2:26930024-26930043 | Msa0065110:intron | 15.0% |
| !! | ATTTATGAAATTGTTGTATA+TGG | + | chr1_2:26930059-26930078 | Msa0065110:intron | 15.0% |
| !! | ATATATGAAATTGTTATGTA+TGG | + | chr1_2:26930174-26930193 | Msa0065110:intron | 15.0% |
| !!! | ATGATAATGATTTTTTACTT+AGG | + | chr1_2:26930253-26930272 | Msa0065110:intron | 15.0% |
| !! | ATATTATTAGGAGAAATAAT+TGG | + | chr1_2:26930708-26930727 | Msa0065110:intron | 15.0% |
| !! | TACAATATTTGTTTATGTTT+AGG | + | chr1_2:26930761-26930780 | Msa0065110:intron | 15.0% |
| !! | AAAGGAAAATTGAAATATAT+CGG | - | chr1_2:26931486-26931505 | None:intergenic | 15.0% |
| !! | TATCATTATCATACATCATA+AGG | - | chr1_2:26930113-26930132 | None:intergenic | 20.0% |
| !!! | TTTTTGTTCTTGTTTTGTTT+TGG | + | chr1_2:26930139-26930158 | Msa0065110:intron | 20.0% |
| !!! | TTTTGTTCTTGTTTTGTTTT+GGG | + | chr1_2:26930140-26930159 | Msa0065110:intron | 20.0% |
| !! | CATTATCATACATAATTAGT+GGG | - | chr1_2:26930242-26930261 | None:intergenic | 20.0% |
| !! | TCATTATCATACATAATTAG+TGG | - | chr1_2:26930243-26930262 | None:intergenic | 20.0% |
| !! | TCATTATCATACATATTGAA+AGG | - | chr1_2:26930349-26930368 | None:intergenic | 20.0% |
| !! | AAACAAACATAATATATCAC+TGG | - | chr1_2:26930391-26930410 | None:intergenic | 20.0% |
| !!! | TTTTATGTGTGTTTTGTTTT+GGG | + | chr1_2:26930408-26930427 | Msa0065110:intron | 20.0% |
| !! | TATTTGTTTATGTTTAGGTA+TGG | + | chr1_2:26930766-26930785 | Msa0065110:intron | 20.0% |
| !!! | ACATTTTAAGAAGCTAAAAT+GGG | - | chr1_2:26930805-26930824 | None:intergenic | 20.0% |
| !!! | AACATTTTAAGAAGCTAAAA+TGG | - | chr1_2:26930806-26930825 | None:intergenic | 20.0% |
| !!! | AGAAAATTAGTCTAAAGAAA+TGG | - | chr1_2:26931156-26931175 | None:intergenic | 20.0% |
| !! | AATAACATTGGAATAAAAAG+AGG | - | chr1_2:26931312-26931331 | None:intergenic | 20.0% |
| !!! | TTTTTGGAGATTATATGTTT+TGG | + | chr1_2:26931431-26931450 | Msa0065110:intron | 20.0% |
| !!! | TTTTGGAGATTATATGTTTT+GGG | + | chr1_2:26931432-26931451 | Msa0065110:intron | 20.0% |
| !! | AAGGAAAATTGAAATATATC+GGG | - | chr1_2:26931485-26931504 | None:intergenic | 20.0% |
| !!! | TATTTCAATTTTCCTTTTAC+TGG | + | chr1_2:26931489-26931508 | Msa0065110:intron | 20.0% |
| !! | TATTCGAGAGAATAAAAAAT+GGG | - | chr1_2:26931548-26931567 | None:intergenic | 20.0% |
| !! | TTACAACTAAAATTCATTAC+AGG | - | chr1_2:26931718-26931737 | None:intergenic | 20.0% |
| !!! | GGAAATTTTCTTTAATAAAG+AGG | - | chr1_2:26932431-26932450 | None:intergenic | 20.0% |
| !! | ATGAACATAAATATGTTAGT+GGG | - | chr1_2:26932452-26932471 | None:intergenic | 20.0% |
| !! | AATGAACATAAATATGTTAG+TGG | - | chr1_2:26932453-26932472 | None:intergenic | 20.0% |
| ! | GAAATTGTTATGTATGGTTA+TGG | + | chr1_2:26930180-26930199 | Msa0065110:intron | 25.0% |
| !!! | GTTTTATGTGTGTTTTGTTT+TGG | + | chr1_2:26930407-26930426 | Msa0065110:intron | 25.0% |
| !!! | TTTGGGTTTTTGTTATGTAT+AGG | + | chr1_2:26930425-26930444 | Msa0065110:intron | 25.0% |
| !!! | TTTGTAGACTCTTTTTAAAG+AGG | + | chr1_2:26930970-26930989 | Msa0065110:intron | 25.0% |
| !!! | TGTTTTTCAGAATAAAGAGA+TGG | - | chr1_2:26931197-26931216 | None:intergenic | 25.0% |
| !! | GATTAGTCAACAAATAACAT+TGG | - | chr1_2:26931324-26931343 | None:intergenic | 25.0% |
| !!! | TAACATGGTGATTTACTTTT+TGG | + | chr1_2:26931415-26931434 | Msa0065110:intron | 25.0% |
| ! | GTATTCGAGAGAATAAAAAA+TGG | - | chr1_2:26931549-26931568 | None:intergenic | 25.0% |
| ! | TAGGAAAAAGAAAGCAAATA+AGG | - | chr1_2:26931915-26931934 | None:intergenic | 25.0% |
| ! | GAAAATTACAAAAATTGCAG+AGG | - | chr1_2:26932287-26932306 | None:intergenic | 25.0% |
| TGGTTATGGTTATGAATATG+TGG | + | chr1_2:26930194-26930213 | Msa0065110:intron | 30.0% | |
| TTGTTATGTATAGGTGAGAA+AGG | + | chr1_2:26930434-26930453 | Msa0065110:intron | 30.0% | |
| TTGTTTATGTTTAGGTATGG+TGG | + | chr1_2:26930769-26930788 | Msa0065110:intron | 30.0% | |
| ! | ACTATGTTGTGCATTTTTCT+TGG | + | chr1_2:26930998-26931017 | Msa0065110:intron | 30.0% |
| ! | CTATGTTGTGCATTTTTCTT+GGG | + | chr1_2:26930999-26931018 | Msa0065110:intron | 30.0% |
| ! | TATGTTGTGCATTTTTCTTG+GGG | + | chr1_2:26931000-26931019 | Msa0065110:intron | 30.0% |
| AAAGAAATGGTAAAGTCACA+TGG | - | chr1_2:26931143-26931162 | None:intergenic | 30.0% | |
| ACATAGCAAACATAAAACAC+AGG | - | chr1_2:26931267-26931286 | None:intergenic | 30.0% | |
| CAACACATACTCATGTTAAA+TGG | + | chr1_2:26931370-26931389 | Msa0065110:intron | 30.0% | |
| ! | AAAAAGAGGGATTTAAGATG+TGG | - | chr1_2:26931459-26931478 | None:intergenic | 30.0% |
| ATATATCGGGTACAAAAAGA+GGG | - | chr1_2:26931472-26931491 | None:intergenic | 30.0% | |
| AATATATCGGGTACAAAAAG+AGG | - | chr1_2:26931473-26931492 | None:intergenic | 30.0% | |
| !! | AACTTTTAATTACCACCCAT+TGG | - | chr1_2:26931524-26931543 | None:intergenic | 30.0% |
| ! | TGTCTCTAACTATTTCTTTC+AGG | + | chr1_2:26931591-26931610 | Msa0065110:intron | 30.0% |
| ! | GTCTCTAACTATTTCTTTCA+GGG | + | chr1_2:26931592-26931611 | Msa0065110:intron | 30.0% |
| AAATCCATGAAGTTTAAGGA+CGG | + | chr1_2:26931792-26931811 | Msa0065110:CDS | 30.0% | |
| TAAACTAACTAACCTGTCTA+AGG | - | chr1_2:26931881-26931900 | None:intergenic | 30.0% | |
| TTTCCTACAACATTTCATGT+TGG | + | chr1_2:26931928-26931947 | Msa0065110:intron | 30.0% | |
| ! | TTTCATGTTGGTTGTTCATT+TGG | + | chr1_2:26931940-26931959 | Msa0065110:intron | 30.0% |
| !! | GTTGTTCATTTGGTTTGTTA+TGG | + | chr1_2:26931950-26931969 | Msa0065110:intron | 30.0% |
| CAAAACATTCTCAAACAACA+GGG | - | chr1_2:26932184-26932203 | None:intergenic | 30.0% | |
| TCAAAACATTCTCAAACAAC+AGG | - | chr1_2:26932185-26932204 | None:intergenic | 30.0% | |
| !!! | GAGAATGTTTTGATTTGCTT+TGG | + | chr1_2:26932192-26932211 | Msa0065110:exon | 30.0% |
| TGAAACTACAAAAATTGCGA+AGG | - | chr1_2:26932328-26932347 | None:intergenic | 30.0% | |
| TTCTTATGTGTGTGGAGAAA+TGG | - | chr1_2:26929623-26929642 | None:intergenic | 35.0% | |
| TCCACACACATAAGAAACTA+GGG | + | chr1_2:26929627-26929646 | Msa0065110:five_prime_UTR | 35.0% | |
| ATGTTTGCAGATTTAGCTAG+GGG | - | chr1_2:26929691-26929710 | None:intergenic | 35.0% | |
| CATGTTTGCAGATTTAGCTA+GGG | - | chr1_2:26929692-26929711 | None:intergenic | 35.0% | |
| !!! | CTTTCGCTTTTTGCTCATTT+GGG | - | chr1_2:26929719-26929738 | None:intergenic | 35.0% |
| CACTACTAAGAGAGATGAAT+TGG | - | chr1_2:26929773-26929792 | None:intergenic | 35.0% | |
| TTTCTTCGCTGAATTGAATG+AGG | + | chr1_2:26929842-26929861 | Msa0065110:CDS | 35.0% | |
| TATGTATAGGTGAGAAAGGA+AGG | + | chr1_2:26930438-26930457 | Msa0065110:intron | 35.0% | |
| AGGGACTCATAAAGCATATA+AGG | - | chr1_2:26931065-26931084 | None:intergenic | 35.0% | |
| TTTCAATGTCACCCTAAGTA+GGG | - | chr1_2:26931084-26931103 | None:intergenic | 35.0% | |
| ! | TTTTCAATGTCACCCTAAGT+AGG | - | chr1_2:26931085-26931104 | None:intergenic | 35.0% |
| ! | AGTCTGCAACTTTTGTAACA+TGG | + | chr1_2:26931400-26931419 | Msa0065110:intron | 35.0% |
| TGGAAATACACACCAGTAAA+AGG | - | chr1_2:26931504-26931523 | None:intergenic | 35.0% | |
| TTACTGGTGTGTATTTCCAA+TGG | + | chr1_2:26931505-26931524 | Msa0065110:intron | 35.0% | |
| TACTGGTGTGTATTTCCAAT+GGG | + | chr1_2:26931506-26931525 | Msa0065110:intron | 35.0% | |
| CAGGAAACAGTATAACAATC+AGG | - | chr1_2:26931699-26931718 | None:intergenic | 35.0% | |
| AGCCAAATCCATGAAGTTTA+AGG | + | chr1_2:26931788-26931807 | Msa0065110:CDS | 35.0% | |
| GTCCTTAAACTTCATGGATT+TGG | - | chr1_2:26931793-26931812 | None:intergenic | 35.0% | |
| AATCCATGAAGTTTAAGGAC+GGG | + | chr1_2:26931793-26931812 | Msa0065110:CDS | 35.0% | |
| GAGTCAATGTAATCCTTAAC+AGG | - | chr1_2:26931840-26931859 | None:intergenic | 35.0% | |
| CAACCAACATGAAATGTTGT+AGG | - | chr1_2:26931934-26931953 | None:intergenic | 35.0% | |
| ! | TTTTGTGTCCTTTGTGTTGT+AGG | + | chr1_2:26931989-26932008 | Msa0065110:intron | 35.0% |
| TTTGTGTCCTTTGTGTTGTA+GGG | + | chr1_2:26931990-26932009 | Msa0065110:intron | 35.0% | |
| TGTGAATGGTGACAATATCA+GGG | - | chr1_2:26932088-26932107 | None:intergenic | 35.0% | |
| CAGACACATCGCTAATTAAA+AGG | - | chr1_2:26932224-26932243 | None:intergenic | 35.0% | |
| !! | CTTTTAATTAGCGATGTGTC+TGG | + | chr1_2:26932222-26932241 | Msa0065110:three_prime_UTR | 35.0% |
| TGGAGAAATGGTTGTAGACA+GGG | - | chr1_2:26929611-26929630 | None:intergenic | 40.0% | |
| CTCCACACACATAAGAAACT+AGG | + | chr1_2:26929626-26929645 | Msa0065110:five_prime_UTR | 40.0% | |
| ACCCTAGTTTCTTATGTGTG+TGG | - | chr1_2:26929631-26929650 | None:intergenic | 40.0% | |
| CCATGTTTGCAGATTTAGCT+AGG | - | chr1_2:26929693-26929712 | None:intergenic | 40.0% | |
| CCTAGCTAAATCTGCAAACA+TGG | + | chr1_2:26929690-26929709 | Msa0065110:exon | 40.0% | |
| !!! | CCTTTCGCTTTTTGCTCATT+TGG | - | chr1_2:26929720-26929739 | None:intergenic | 40.0% |
| CCAAATGAGCAAAAAGCGAA+AGG | + | chr1_2:26929717-26929736 | Msa0065110:CDS | 40.0% | |
| ! | TTATTCCGGTGTTGAGGTTA+GGG | + | chr1_2:26929893-26929912 | Msa0065110:CDS | 40.0% |
| TAAAGCTCAACACTGTTCTC+AGG | - | chr1_2:26930509-26930528 | None:intergenic | 40.0% | |
| TCAAAGCTGTCTACGATGAT+TGG | + | chr1_2:26930903-26930922 | Msa0065110:intron | 40.0% | |
| TGCTTTATGAGTCCCTACTT+AGG | + | chr1_2:26931069-26931088 | Msa0065110:intron | 40.0% | |
| GCTTTATGAGTCCCTACTTA+GGG | + | chr1_2:26931070-26931089 | Msa0065110:intron | 40.0% | |
| AAATGGTAAAGTCACATGGC+TGG | - | chr1_2:26931139-26931158 | None:intergenic | 40.0% | |
| TTGAGGTTTGTCATGGAAAG+TGG | + | chr1_2:26931629-26931648 | Msa0065110:CDS | 40.0% | |
| !! | GTAATTGCTGTTTCATGTGC+AGG | + | chr1_2:26931734-26931753 | Msa0065110:intron | 40.0% |
| ATACCCGTCCTTAAACTTCA+TGG | - | chr1_2:26931799-26931818 | None:intergenic | 40.0% | |
| GTAATCCTTAACAGGTTGTC+CGG | - | chr1_2:26931832-26931851 | None:intergenic | 40.0% | |
| ! | TTTGTGTTGTAGGGTGTTCT+CGG | + | chr1_2:26931999-26932018 | Msa0065110:intron | 40.0% |
| AGGTTAAGATCATGCTTGAC+TGG | + | chr1_2:26932027-26932046 | Msa0065110:CDS | 40.0% | |
| GGTTAAGATCATGCTTGACT+GGG | + | chr1_2:26932028-26932047 | Msa0065110:CDS | 40.0% | |
| AATGGTGACAATATCAGGGA+GGG | - | chr1_2:26932084-26932103 | None:intergenic | 40.0% | |
| GTGTGAATGGTGACAATATC+AGG | - | chr1_2:26932089-26932108 | None:intergenic | 40.0% | |
| TGTTGTGGCCAATGATATTG+AGG | + | chr1_2:26932145-26932164 | Msa0065110:CDS | 40.0% | |
| GACAGGAACCTCAATATCAT+TGG | - | chr1_2:26932156-26932175 | None:intergenic | 40.0% | |
| ATTCTCAAACAACAGGGACT+GGG | - | chr1_2:26932178-26932197 | None:intergenic | 40.0% | |
| GGCGTGTGCATAGTTAACTA+AGG | - | chr1_2:26929589-26929608 | None:intergenic | 45.0% | |
| GGAGAAATGGTTGTAGACAG+GGG | - | chr1_2:26929610-26929629 | None:intergenic | 45.0% | |
| GTGGAGAAATGGTTGTAGAC+AGG | - | chr1_2:26929612-26929631 | None:intergenic | 45.0% | |
| TTTGCAGATTTAGCTAGGGG+CGG | - | chr1_2:26929688-26929707 | None:intergenic | 45.0% | |
| !! | TTTAACCAGAGAGCTTGCTG+AGG | + | chr1_2:26929866-26929885 | Msa0065110:CDS | 45.0% |
| CTTGCTGAGGATGGTTATTC+CGG | + | chr1_2:26929879-26929898 | Msa0065110:CDS | 45.0% | |
| ! | GTTATTCCGGTGTTGAGGTT+AGG | + | chr1_2:26929892-26929911 | Msa0065110:CDS | 45.0% |
| TGATGATCTCAGTGCGCATA+GGG | - | chr1_2:26929923-26929942 | None:intergenic | 45.0% | |
| ATGATGATCTCAGTGCGCAT+AGG | - | chr1_2:26929924-26929943 | None:intergenic | 45.0% | |
| TGAGTTACCGAGAACAGCTT+GGG | - | chr1_2:26929961-26929980 | None:intergenic | 45.0% | |
| ATGAGTTACCGAGAACAGCT+TGG | - | chr1_2:26929962-26929981 | None:intergenic | 45.0% | |
| AATTAGAGAGCTCACCTCAG+TGG | + | chr1_2:26930463-26930482 | Msa0065110:CDS | 45.0% | |
| TGTTGAGCTTTACGCTGAGA+AGG | + | chr1_2:26930517-26930536 | Msa0065110:CDS | 45.0% | |
| CAGCTTATAGCGAAGAGACT+CGG | - | chr1_2:26930576-26930595 | None:intergenic | 45.0% | |
| TCTCTTCGCTATAAGCTGCT+CGG | + | chr1_2:26930578-26930597 | Msa0065110:CDS | 45.0% | |
| TGGTGTGTATTTCCAATGGG+TGG | + | chr1_2:26931509-26931528 | Msa0065110:intron | 45.0% | |
| ATTTCTTTCAGGGCCTGCTA+TGG | + | chr1_2:26931602-26931621 | Msa0065110:intron | 45.0% | |
| AAACCTCAACACACCATAGC+AGG | - | chr1_2:26931618-26931637 | None:intergenic | 45.0% | |
| TGGTGTGTTGAGGTTTGTCA+TGG | + | chr1_2:26931622-26931641 | Msa0065110:CDS | 45.0% | |
| AAAACAAACCTCGCATCCCT+TGG | - | chr1_2:26931657-26931676 | None:intergenic | 45.0% | |
| CATGTGCAGGTTATTGTCAG+TGG | + | chr1_2:26931747-26931766 | Msa0065110:intron | 45.0% | |
| CAGACATGTTCTCCTTAGAC+AGG | + | chr1_2:26931866-26931885 | Msa0065110:CDS | 45.0% | |
| GAGAACACCCTACAACACAA+AGG | - | chr1_2:26932000-26932019 | None:intergenic | 45.0% | |
| ATGCTTGACTGGGATCCTAA+AGG | + | chr1_2:26932038-26932057 | Msa0065110:CDS | 45.0% | |
| TGGGATCCTAAAGGAAAGCA+GGG | + | chr1_2:26932047-26932066 | Msa0065110:CDS | 45.0% | |
| ! | TATCAGGGAGGGGAGTTTTA+GGG | - | chr1_2:26932073-26932092 | None:intergenic | 45.0% |
| ! | ATATCAGGGAGGGGAGTTTT+AGG | - | chr1_2:26932074-26932093 | None:intergenic | 45.0% |
| ATGGTGACAATATCAGGGAG+GGG | - | chr1_2:26932083-26932102 | None:intergenic | 45.0% | |
| GAATGGTGACAATATCAGGG+AGG | - | chr1_2:26932085-26932104 | None:intergenic | 45.0% | |
| TGTCACCATTCACACTCCAA+AGG | + | chr1_2:26932094-26932113 | Msa0065110:CDS | 45.0% | |
| !! | CTCTTCCTTTGGAGTGTGAA+TGG | - | chr1_2:26932102-26932121 | None:intergenic | 45.0% |
| CATTCACACTCCAAAGGAAG+AGG | + | chr1_2:26932100-26932119 | Msa0065110:CDS | 45.0% | |
| ATGTACTCCTCCTCTTCCTT+TGG | - | chr1_2:26932113-26932132 | None:intergenic | 45.0% | |
| CATTCTCAAACAACAGGGAC+TGG | - | chr1_2:26932179-26932198 | None:intergenic | 45.0% | |
| TTGTTGCAGTTCGTCGCTGA+CGG | + | chr1_2:26929816-26929835 | Msa0065110:intron | 50.0% | |
| ! | GGATGGTTATTCCGGTGTTG+AGG | + | chr1_2:26929887-26929906 | Msa0065110:CDS | 50.0% |
| GGTAACCCTAACCTCAACAC+CGG | - | chr1_2:26929901-26929920 | None:intergenic | 50.0% | |
| GATGATCTCAGTGCGCATAG+GGG | - | chr1_2:26929922-26929941 | None:intergenic | 50.0% | |
| TGCGCACTGAGATCATCATC+AGG | + | chr1_2:26929925-26929944 | Msa0065110:CDS | 50.0% | |
| GCGCACTGAGATCATCATCA+GGG | + | chr1_2:26929926-26929945 | Msa0065110:CDS | 50.0% | |
| ACTCGTACCCAAGCTGTTCT+CGG | + | chr1_2:26929951-26929970 | Msa0065110:CDS | 50.0% | |
| TCACCTCAGTGGTGCAGAAA+AGG | + | chr1_2:26930474-26930493 | Msa0065110:CDS | 50.0% | |
| ! | GAACCTTTTCTGCACCACTG+AGG | - | chr1_2:26930480-26930499 | None:intergenic | 50.0% |
| ACGCTGAGAAGGTCAACAAC+AGG | + | chr1_2:26930528-26930547 | Msa0065110:CDS | 50.0% | |
| CGCTGAGAAGGTCAACAACA+GGG | + | chr1_2:26930529-26930548 | Msa0065110:CDS | 50.0% | |
| GCTGAGAAGGTCAACAACAG+GGG | + | chr1_2:26930530-26930549 | Msa0065110:CDS | 50.0% | |
| ! | TGTCATGGAAAGTGGTGCCA+AGG | + | chr1_2:26931637-26931656 | Msa0065110:CDS | 50.0% |
| ! | GTCATGGAAAGTGGTGCCAA+GGG | + | chr1_2:26931638-26931657 | Msa0065110:CDS | 50.0% |
| GACGGGTATATGATCTCGTC+CGG | + | chr1_2:26931810-26931829 | Msa0065110:CDS | 50.0% | |
| ! | GTAGGGTGTTCTCGGTATCA+AGG | + | chr1_2:26932007-26932026 | Msa0065110:intron | 50.0% |
| CTGGGATCCTAAAGGAAAGC+AGG | + | chr1_2:26932046-26932065 | Msa0065110:CDS | 50.0% | |
| TTAGGGCCCTGCTTTCCTTT+AGG | - | chr1_2:26932056-26932075 | None:intergenic | 50.0% | |
| TCACACTCCAAAGGAAGAGG+AGG | + | chr1_2:26932103-26932122 | Msa0065110:CDS | 50.0% | |
| ! | AGGAAGAGGAGGAGTACATC+AGG | + | chr1_2:26932114-26932133 | Msa0065110:CDS | 50.0% |
| !! | ACCAGAGAGCTTGCTGAGGA+TGG | + | chr1_2:26929870-26929889 | Msa0065110:CDS | 55.0% |
| ACCATCCTCAGCAAGCTCTC+TGG | - | chr1_2:26929874-26929893 | None:intergenic | 55.0% | |
| AAGAGACTCGGCCTGAGCAA+TGG | - | chr1_2:26930564-26930583 | None:intergenic | 55.0% | |
| CTTCGCTATAAGCTGCTCGG+AGG | + | chr1_2:26930581-26930600 | Msa0065110:CDS | 55.0% | |
| !! | TCGGAGGTCTTGCTGTTCGA+AGG | + | chr1_2:26930597-26930616 | Msa0065110:CDS | 55.0% |
| CTCGTCCGGACAACCTGTTA+AGG | + | chr1_2:26931824-26931843 | Msa0065110:CDS | 55.0% | |
| TCATTGGCCACAACAGCAGC+AGG | - | chr1_2:26932140-26932159 | None:intergenic | 55.0% | |
| CAAACAACAGGGACTGGGAC+AGG | - | chr1_2:26932173-26932192 | None:intergenic | 55.0% | |
| GGGACTTTGCGCCATTGCTC+AGG | + | chr1_2:26930550-26930569 | Msa0065110:CDS | 60.0% | |
| GGGCCTGCTATGGTGTGTTG+AGG | + | chr1_2:26931612-26931631 | Msa0065110:intron | 60.0% | |
| ! | AAGTGGTGCCAAGGGATGCG+AGG | + | chr1_2:26931646-26931665 | Msa0065110:CDS | 60.0% |
| CATCAGGCCTGCTGCTGTTG+TGG | + | chr1_2:26932130-26932149 | Msa0065110:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 26929557 | 26932548 | 26929557 | ID=Msa0065110;Name=Msa0065110 |
| chr1_2 | mRNA | 26929557 | 26932548 | 26929557 | ID=Msa0065110-mRNA-1;Parent=Msa0065110;Name=Msa0065110-mRNA-1;_AED=0.06;_eAED=0.06;_QI=152|1|1|1|1|1|6|355|239 |
| chr1_2 | exon | 26929557 | 26929738 | 26929557 | ID=Msa0065110-mRNA-1:exon:9449;Parent=Msa0065110-mRNA-1 |
| chr1_2 | exon | 26929825 | 26929972 | 26929825 | ID=Msa0065110-mRNA-1:exon:9450;Parent=Msa0065110-mRNA-1 |
| chr1_2 | exon | 26930447 | 26930618 | 26930447 | ID=Msa0065110-mRNA-1:exon:9451;Parent=Msa0065110-mRNA-1 |
| chr1_2 | exon | 26931613 | 26931667 | 26931613 | ID=Msa0065110-mRNA-1:exon:9452;Parent=Msa0065110-mRNA-1 |
| chr1_2 | exon | 26931756 | 26931887 | 26931756 | ID=Msa0065110-mRNA-1:exon:9453;Parent=Msa0065110-mRNA-1 |
| chr1_2 | exon | 26932011 | 26932548 | 26932011 | ID=Msa0065110-mRNA-1:exon:9454;Parent=Msa0065110-mRNA-1 |
| chr1_2 | five_prime_UTR | 26929557 | 26929708 | 26929557 | ID=Msa0065110-mRNA-1:five_prime_utr;Parent=Msa0065110-mRNA-1 |
| chr1_2 | CDS | 26929709 | 26929738 | 26929709 | ID=Msa0065110-mRNA-1:cds;Parent=Msa0065110-mRNA-1 |
| chr1_2 | CDS | 26929825 | 26929972 | 26929825 | ID=Msa0065110-mRNA-1:cds;Parent=Msa0065110-mRNA-1 |
| chr1_2 | CDS | 26930447 | 26930618 | 26930447 | ID=Msa0065110-mRNA-1:cds;Parent=Msa0065110-mRNA-1 |
| chr1_2 | CDS | 26931613 | 26931667 | 26931613 | ID=Msa0065110-mRNA-1:cds;Parent=Msa0065110-mRNA-1 |
| chr1_2 | CDS | 26931756 | 26931887 | 26931756 | ID=Msa0065110-mRNA-1:cds;Parent=Msa0065110-mRNA-1 |
| chr1_2 | CDS | 26932011 | 26932193 | 26932011 | ID=Msa0065110-mRNA-1:cds;Parent=Msa0065110-mRNA-1 |
| chr1_2 | three_prime_UTR | 26932194 | 26932548 | 26932194 | ID=Msa0065110-mRNA-1:three_prime_utr;Parent=Msa0065110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
