AlfalfaGEDB | Msa1446410

M. sativa cultivar zhongmu-4 / Msa1446410

KEGG: K02998
GO: GO:0000028 GO:0000447 GO:0000460 GO:0000461 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006407 GO:0006412 GO:0006518 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006970 GO:0006996 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0015935 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030490 GO:0030684 GO:0030686 GO:0031123 GO:0031125 GO:0031503 GO:0032991 GO:0033036 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0042886 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043628 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051029 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0055044 GO:0065003 GO:0070727 GO:0070925 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0071944 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097064 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1446410	sp\|O65751\|RSSA_CICAR	82.000	100	17	1	1	99	201	300	4.95e-49	160

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1446410	A0A1S2X8M2	82.000	100	17	1	1	99	201	300	1.89e-46	160

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001760	Msa1446410	0.873529	1.370120e-67	-8.615850e-47
Msa0003330	Msa1446410	0.878621	2.421371e-69	-8.615850e-47
Msa0027590	Msa1446410	0.865588	5.295319e-65	-8.615850e-47
Msa0032780	Msa1446410	0.838502	2.767825e-57	-8.615850e-47
Msa0040220	Msa1446410	0.803667	3.124845e-49	-8.615850e-47
Msa0065110	Msa1446410	0.824015	1.014806e-53	-8.615850e-47
Msa0072570	Msa1446410	0.831425	1.681154e-55	-8.615850e-47
Msa0075350	Msa1446410	0.829107	6.194108e-55	-8.615850e-47
Msa0086160	Msa1446410	0.803458	3.452925e-49	-8.615850e-47
Msa0087910	Msa1446410	0.852016	6.084847e-61	-8.615850e-47
Msa0114570	Msa1446410	0.821668	3.571705e-53	-8.615850e-47
Msa0114600	Msa1446410	0.881368	2.544006e-70	-8.615850e-47
Msa1351020	Msa1446410	0.891276	4.604264e-74	-8.615850e-47
Msa1362210	Msa1446410	0.853960	1.691582e-61	-8.615850e-47
Msa1368920	Msa1446410	0.858008	1.106428e-62	-8.615850e-47
Msa1374480	Msa1446410	0.828745	7.577115e-55	-8.615850e-47
Msa1385480	Msa1446410	0.857883	1.204899e-62	-8.615850e-47
Msa1390760	Msa1446410	0.856736	2.630448e-62	-8.615850e-47
Msa1397100	Msa1446410	0.820618	6.236302e-53	-8.615850e-47
Msa1403910	Msa1446410	0.810236	1.274107e-50	-8.615850e-47
Msa1407550	Msa1446410	0.829779	4.251861e-55	-8.615850e-47
Msa1418770	Msa1446410	0.829288	5.597399e-55	-8.615850e-47
Msa1424570	Msa1446410	0.800117	1.675461e-48	-8.615850e-47
Msa1425070	Msa1446410	0.806063	9.868979e-50	-8.615850e-47
Msa1432310	Msa1446410	0.863185	2.981055e-64	-8.615850e-47
Msa1441220	Msa1446410	-0.804646	1.955156e-49	-8.615850e-47
Msa1446410	Msa1450560	0.824530	7.679266e-54	-8.615850e-47
Msa1446410	Msa1463570	0.887641	1.193341e-72	-8.615850e-47
Msa1446410	Msa1465700	0.819765	9.778031e-53	-8.615850e-47
Msa0602900	Msa1446410	0.827628	1.408371e-54	-8.615850e-47
Msa0605890	Msa1446410	0.861171	1.237073e-63	-8.615850e-47
Msa0619230	Msa1446410	0.857728	1.339385e-62	-8.615850e-47
Msa0622230	Msa1446410	0.872971	2.109509e-67	-8.615850e-47
Msa0643960	Msa1446410	0.832725	8.022888e-56	-8.615850e-47
Msa0649890	Msa1446410	0.867372	1.437117e-65	-8.615850e-47
Msa0663400	Msa1446410	0.811848	5.700287e-51	-8.615850e-47
Msa0681220	Msa1446410	0.808123	3.614314e-50	-8.615850e-47
Msa0686550	Msa1446410	0.872132	4.020591e-67	-8.615850e-47
Msa0694400	Msa1446410	0.866265	3.236335e-65	-8.615850e-47
Msa0704860	Msa1446410	0.869149	3.844597e-66	-8.615850e-47
Msa0705800	Msa1446410	0.841779	3.862135e-58	-8.615850e-47
Msa0708630	Msa1446410	0.818531	1.867124e-52	-8.615850e-47
Msa0748350	Msa1446410	0.885284	9.287304e-72	-8.615850e-47
Msa0749000	Msa1446410	0.817986	2.480931e-52	-8.615850e-47
Msa0758420	Msa1446410	0.826711	2.334684e-54	-8.615850e-47
Msa0788380	Msa1446410	0.866666	2.412517e-65	-8.615850e-47
Msa0790450	Msa1446410	0.821898	3.161129e-53	-8.615850e-47
Msa0796490	Msa1446410	0.814595	1.421949e-51	-8.615850e-47
Msa0822580	Msa1446410	0.858980	5.674999e-63	-8.615850e-47
Msa0838070	Msa1446410	0.841114	5.780365e-58	-8.615850e-47
Msa0128330	Msa1446410	0.887046	2.012776e-72	-8.615850e-47
Msa0128750	Msa1446410	0.814782	1.293009e-51	-8.615850e-47
Msa0132460	Msa1446410	0.818017	2.440613e-52	-8.615850e-47
Msa0134580	Msa1446410	0.846800	1.730127e-59	-8.615850e-47
Msa0146610	Msa1446410	0.863475	2.424728e-64	-8.615850e-47
Msa0167860	Msa1446410	0.910631	1.508411e-82	-8.615850e-47
Msa0168320	Msa1446410	0.814832	1.260190e-51	-8.615850e-47
Msa0174580	Msa1446410	0.889081	3.332806e-73	-8.615850e-47
Msa0182050	Msa1446410	0.818167	2.257400e-52	-8.615850e-47
Msa0182100	Msa1446410	0.820473	6.732547e-53	-8.615850e-47
Msa0191450	Msa1446410	0.880813	4.030176e-70	-8.615850e-47
Msa0191550	Msa1446410	0.889784	1.776595e-73	-8.615850e-47
Msa0192300	Msa1446410	0.839551	1.480527e-57	-8.615850e-47
Msa0194940	Msa1446410	0.910416	1.919734e-82	-8.615850e-47
Msa0195030	Msa1446410	0.801328	9.482365e-49	-8.615850e-47
Msa0210330	Msa1446410	0.826162	3.156195e-54	-8.615850e-47
Msa0225350	Msa1446410	0.814249	1.696166e-51	-8.615850e-47
Msa0229150	Msa1446410	0.834865	2.340676e-56	-8.615850e-47
Msa0233550	Msa1446410	0.800337	1.511085e-48	-8.615850e-47
Msa0235050	Msa1446410	0.830475	2.876848e-55	-8.615850e-47
Msa1235950	Msa1446410	0.807667	4.519244e-50	-8.615850e-47
Msa1235980	Msa1446410	0.819548	1.096475e-52	-8.615850e-47
Msa1237040	Msa1446410	0.809045	2.297059e-50	-8.615850e-47
Msa1240270	Msa1446410	0.819789	9.655699e-53	-8.615850e-47
Msa1258540	Msa1446410	0.837868	4.032731e-57	-8.615850e-47
Msa1270640	Msa1446410	0.826114	3.239353e-54	-8.615850e-47
Msa1270710	Msa1446410	0.821827	3.282224e-53	-8.615850e-47
Msa1311400	Msa1446410	0.875090	4.053305e-68	-8.615850e-47
Msa1330730	Msa1446410	0.803335	3.662351e-49	-8.615850e-47
Msa1332250	Msa1446410	0.803753	2.999522e-49	-8.615850e-47
Msa0369410	Msa1446410	0.808626	2.824360e-50	-8.615850e-47
Msa0371490	Msa1446410	0.839237	1.787190e-57	-8.615850e-47
Msa0376830	Msa1446410	0.831014	2.122440e-55	-8.615850e-47
Msa0377370	Msa1446410	0.800493	1.404361e-48	-8.615850e-47
Msa0377520	Msa1446410	0.856764	2.579321e-62	-8.615850e-47
Msa0419710	Msa1446410	0.863571	2.264516e-64	-8.615850e-47
Msa0426090	Msa1446410	0.849149	3.892942e-60	-8.615850e-47
Msa0426250	Msa1446410	0.871056	9.141188e-67	-8.615850e-47
Msa0438960	Msa1446410	0.839340	1.680620e-57	-8.615850e-47
Msa0450150	Msa1446410	0.867624	1.193520e-65	-8.615850e-47
Msa0471880	Msa1446410	0.829454	5.100517e-55	-8.615850e-47
Msa0472480	Msa1446410	0.838141	3.430102e-57	-8.615850e-47
Msa0481520	Msa1446410	0.885881	5.547682e-72	-8.615850e-47
Msa0481800	Msa1446410	0.811702	6.133260e-51	-8.615850e-47
Msa1037290	Msa1446410	0.856728	2.643949e-62	-8.615850e-47
Msa1040160	Msa1446410	0.812410	4.299250e-51	-8.615850e-47
Msa1041680	Msa1446410	0.816027	6.831735e-52	-8.615850e-47
Msa1050100	Msa1446410	0.809948	1.470225e-50	-8.615850e-47
Msa1068660	Msa1446410	0.806530	7.867202e-50	-8.615850e-47
Msa1078870	Msa1446410	0.800909	1.155274e-48	-8.615850e-47
Msa1082170	Msa1446410	0.839244	1.779142e-57	-8.615850e-47
Msa1083360	Msa1446410	-0.806108	9.654520e-50	-8.615850e-47
Msa0239420	Msa1446410	0.834689	2.592473e-56	-8.615850e-47
Msa0264640	Msa1446410	0.803609	3.212542e-49	-8.615850e-47
Msa0270160	Msa1446410	0.801585	8.399865e-49	-8.615850e-47
Msa0277600	Msa1446410	0.869914	2.165248e-66	-8.615850e-47
Msa0281330	Msa1446410	0.845223	4.643883e-59	-8.615850e-47
Msa0281370	Msa1446410	0.881897	1.637926e-70	-8.615850e-47
Msa0301250	Msa1446410	0.838808	2.307141e-57	-8.615850e-47
Msa0312210	Msa1446410	0.832283	1.032551e-55	-8.615850e-47
Msa0313060	Msa1446410	0.872420	3.225672e-67	-8.615850e-47
Msa0313520	Msa1446410	0.849844	2.491290e-60	-8.615850e-47
Msa0315430	Msa1446410	0.923749	1.761758e-89	-8.615850e-47
Msa1125900	Msa1446410	0.822933	1.817044e-53	-8.615850e-47
Msa1126100	Msa1446410	0.808896	2.471925e-50	-8.615850e-47
Msa1126520	Msa1446410	0.846973	1.550665e-59	-8.615850e-47
Msa1126690	Msa1446410	0.840404	8.874322e-58	-8.615850e-47
Msa1131030	Msa1446410	0.800672	1.291268e-48	-8.615850e-47
Msa1156830	Msa1446410	0.813202	2.883507e-51	-8.615850e-47
Msa1164150	Msa1446410	0.884677	1.563773e-71	-8.615850e-47
Msa1165640	Msa1446410	0.874577	6.058204e-68	-8.615850e-47
Msa1166570	Msa1446410	0.813755	2.179510e-51	-8.615850e-47
Msa1167540	Msa1446410	0.813012	3.174246e-51	-8.615850e-47
Msa1180000	Msa1446410	0.826453	2.690345e-54	-8.615850e-47
Msa1186030	Msa1446410	0.841655	4.166060e-58	-8.615850e-47
Msa0484730	Msa1446410	0.810221	1.283703e-50	-8.615850e-47
Msa0511760	Msa1446410	0.834447	2.981834e-56	-8.615850e-47
Msa0517480	Msa1446410	0.856496	3.092975e-62	-8.615850e-47
Msa0529900	Msa1446410	0.869470	3.023197e-66	-8.615850e-47
Msa0547920	Msa1446410	0.844817	5.975721e-59	-8.615850e-47
Msa0550420	Msa1446410	0.848103	7.584532e-60	-8.615850e-47
Msa0573550	Msa1446410	0.904772	8.648014e-80	-8.615850e-47
Msa0574780	Msa1446410	0.843520	1.332250e-58	-8.615850e-47
Msa0579830	Msa1446410	0.857259	1.843148e-62	-8.615850e-47
Msa0585570	Msa1446410	0.801273	9.733324e-49	-8.615850e-47
Msa0597240	Msa1446410	0.812717	3.682968e-51	-8.615850e-47
Msa0861320	Msa1446410	0.802396	5.722331e-49	-8.615850e-47
Msa0915540	Msa1446410	0.801396	9.183091e-49	-8.615850e-47
Msa0929700	Msa1446410	0.900029	1.101606e-77	-8.615850e-47
Msa0930100	Msa1446410	0.812705	3.706417e-51	-8.615850e-47
Msa0930890	Msa1446410	0.844375	7.859680e-59	-8.615850e-47
Msa0978470	Msa1446410	0.830779	2.422661e-55	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1446410	MtrunA17_Chr3g0129861	94.949	99	5	0	1	99	201	299	1.50e-44	145
Msa1446410	MtrunA17_Chr7g0268451	80.198	101	18	2	1	99	197	297	1.23e-39	133

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 56 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCTTCCCCGAAAGTAAAATT+TGG	0.135538	tig0031362:+772	Msa1446410:three_prime_UTR
AAATGTTCTTTACCAGCTTC+TGG	0.204965	tig0031362:-328	None:intergenic
CTCTTGCTCCTTGGCCTCTT+CGG	0.208222	tig0031362:-155	None:intergenic
TTCTTTCAGTTGCAGGGGAC+TGG	0.226869	tig0031362:+627	Msa1446410:intron
CAGCAGCTCCTGGTGTCAAC+TGG	0.259408	tig0031362:+299	Msa1446410:CDS
GAAATTAAACCATGGTTAAC+TGG	0.291720	tig0031362:-977	None:intergenic
TCTTGCTCCTTGGCCTCTTC+GGG	0.307675	tig0031362:-154	None:intergenic
TCTTTCAGTTGCAGGGGACT+GGG	0.335061	tig0031362:+628	Msa1446410:intron
GCATTTCGCCTCCACTTGTT+TGG	0.348769	tig0031362:+926	Msa1446410:three_prime_UTR
TTCATCCTCCTCTTGCTCCT+TGG	0.369266	tig0031362:-164	None:intergenic
GCTGTCACAGATTCAATTCC+AGG	0.382679	tig0031362:-686	None:intergenic
ATTGAATCTGTGACAGCAAC+TGG	0.400686	tig0031362:+692	Msa1446410:CDS
AATGTTCTTTACCAGCTTCT+GGG	0.407962	tig0031362:-327	None:intergenic
ACACCAGGAGCTGCTGGAAT+AGG	0.410453	tig0031362:-292	None:intergenic
CTTCCCCGAAAGTAAAATTT+GGG	0.414595	tig0031362:+773	Msa1446410:three_prime_UTR
GGTGCTTTGATTTCTAGTAT+AGG	0.415180	tig0031362:+1044	Msa1446410:three_prime_UTR
CAGTTGACACCAGGAGCTGC+TGG	0.455088	tig0031362:-298	None:intergenic
GCCATTGCTGACTTCAATGC+TGG	0.456055	tig0031362:+205	Msa1446410:CDS
TGTGGTGCTGCATCAGTCCA+TGG	0.469309	tig0031362:-268	None:intergenic
AATCTGTGACAGCAACTGGC+TGG	0.470930	tig0031362:+696	Msa1446410:CDS
GTGGGAATTTGTTGCGGTGG+TGG	0.473747	tig0031362:-662	None:intergenic
AACTGGGCTGCCCCAGAAGC+TGG	0.477922	tig0031362:+316	Msa1446410:CDS
AGCAGCTCCTGGTGTCAACT+GGG	0.479182	tig0031362:+300	Msa1446410:CDS
CAGCCTATTCCAGCAGCTCC+TGG	0.483642	tig0031362:+289	Msa1446410:CDS
CCGCAACAAATTCCCACTCC+TGG	0.483783	tig0031362:+668	Msa1446410:CDS
AGTGTATTCTTTCAGTTGCA+GGG	0.499899	tig0031362:+621	Msa1446410:intron
CTTTCAGTTGCAGGGGACTG+GGG	0.513229	tig0031362:+629	Msa1446410:intron
AATGCTGGTGGTCCATCTGA+TGG	0.520603	tig0031362:+220	Msa1446410:CDS
AAGGGAAGTAAAATTAACTG+TGG	0.525039	tig0031362:-753	None:intergenic
CGAAGAGGCCAAGGAGCAAG+AGG	0.529876	tig0031362:+156	Msa1446410:CDS
ATCTGTGACAGCAACTGGCT+GGG	0.531636	tig0031362:+697	Msa1446410:CDS
GGGGCAGCCCAGTTGACACC+AGG	0.539769	tig0031362:-307	None:intergenic
TAGAGAACCCGAAGAGGCCA+AGG	0.540338	tig0031362:+147	Msa1446410:CDS
CCAGGAGTGGGAATTTGTTG+CGG	0.543589	tig0031362:-668	None:intergenic
GTGTATTCTTTCAGTTGCAG+GGG	0.570945	tig0031362:+622	Msa1446410:intron
CACAGATTCAATTCCAGGAG+TGG	0.579651	tig0031362:-681	None:intergenic
GCAATGGCATAATCTAGAGC+AGG	0.581740	tig0031362:-190	None:intergenic
GTGGTCCATCTGATGGTCAG+TGG	0.581948	tig0031362:+227	Msa1446410:CDS
ATGTTCTTTACCAGCTTCTG+GGG	0.588593	tig0031362:-326	None:intergenic
ACAGATTCAATTCCAGGAGT+GGG	0.591012	tig0031362:-680	None:intergenic
AGAGGCCAAGGAGCAAGAGG+AGG	0.600295	tig0031362:+159	Msa1446410:CDS
GGAGCTGCTGGAATAGGCTG+TGG	0.601218	tig0031362:-286	None:intergenic
ATTGCTGACTTCAATGCTGG+TGG	0.602149	tig0031362:+208	Msa1446410:CDS
CTACTGCAATTGAGCAGCCA+TGG	0.603201	tig0031362:+251	Msa1446410:CDS
AGGGAAGTAAAATTAACTGT+GGG	0.604132	tig0031362:-752	None:intergenic
GGAGTGGGAATTTGTTGCGG+TGG	0.607574	tig0031362:-665	None:intergenic
TTCTTCTAGTATGTTACGGG+TGG	0.610121	tig0031362:+823	Msa1446410:three_prime_UTR
CAACTTACTCCAGTTAACCA+TGG	0.612131	tig0031362:+968	Msa1446410:three_prime_UTR
CATGGCTGCTCAATTGCAGT+AGG	0.613104	tig0031362:-250	None:intergenic
TTTATTCTGAAATTAAACCA+TGG	0.614267	tig0031362:-985	None:intergenic
GTAGGCCACTGACCATCAGA+TGG	0.625414	tig0031362:-232	None:intergenic
CACGTATGCCAAACAAGTGG+AGG	0.630545	tig0031362:-934	None:intergenic
ACCAGCATTGAAGTCAGCAA+TGG	0.630888	tig0031362:-206	None:intergenic
GGAAGTAAAATTAACTGTGG+GGG	0.652093	tig0031362:-750	None:intergenic
CAACACGTATGCCAAACAAG+TGG	0.661858	tig0031362:-937	None:intergenic
GGGAAGTAAAATTAACTGTG+GGG	0.708133	tig0031362:-751	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTTTAAAAGATAACAATAA+CGG	-	tig0031362:463-482	None:intergenic	10.0%
!!	ATAAAAAAAATGAATACATA+TGG	-	tig0031362:595-614	None:intergenic	10.0%
!!!	ATTTTAAAAGATAACAATAA+CGG	-	tig0031362:463-482	None:intergenic	10.0%
!!	ATAAAAAAAATGAATACATA+TGG	-	tig0031362:595-614	None:intergenic	10.0%
!!	ATTTCTCTTCAACTTTAATT+TGG	+	tig0031362:405-424	Msa1446410:intron	20.0%
!!!	TTTCTCTTCAACTTTAATTT+GGG	+	tig0031362:406-425	Msa1446410:intron	20.0%
!!	AAAACAAATTGAAGATCAAA+GGG	-	tig0031362:436-455	None:intergenic	20.0%
!!	TAAAACAAATTGAAGATCAA+AGG	-	tig0031362:437-456	None:intergenic	20.0%
!!!	ACAATTTTACTTAAAATCTC+AGG	-	tig0031362:867-886	None:intergenic	20.0%
!!!	TTTATTCTGAAATTAAACCA+TGG	-	tig0031362:988-1007	None:intergenic	20.0%
!!!	TCAGAATAAATTTTTAGTGT+AGG	+	tig0031362:998-1017	Msa1446410:three_prime_UTR	20.0%
!!!	AAATTTTTAGTGTAGGAATA+TGG	+	tig0031362:1005-1024	Msa1446410:three_prime_UTR	20.0%
!!!	TATGGTTTTTTACATGTATA+CGG	+	tig0031362:1023-1042	Msa1446410:three_prime_UTR	20.0%
!!	ATTTCTCTTCAACTTTAATT+TGG	+	tig0031362:405-424	Msa1446410:intron	20.0%
!!!	TTTCTCTTCAACTTTAATTT+GGG	+	tig0031362:406-425	Msa1446410:intron	20.0%
!!	AAAACAAATTGAAGATCAAA+GGG	-	tig0031362:436-455	None:intergenic	20.0%
!!	TAAAACAAATTGAAGATCAA+AGG	-	tig0031362:437-456	None:intergenic	20.0%
!!!	ACAATTTTACTTAAAATCTC+AGG	-	tig0031362:867-886	None:intergenic	20.0%
!!!	TTTATTCTGAAATTAAACCA+TGG	-	tig0031362:988-1007	None:intergenic	20.0%
!!!	TCAGAATAAATTTTTAGTGT+AGG	+	tig0031362:998-1017	Msa1446410:three_prime_UTR	20.0%
!!!	AAATTTTTAGTGTAGGAATA+TGG	+	tig0031362:1005-1024	Msa1446410:three_prime_UTR	20.0%
!!!	TATGGTTTTTTACATGTATA+CGG	+	tig0031362:1023-1042	Msa1446410:three_prime_UTR	20.0%
!!	AAAAATCTTGAGTTTAGGTT+AGG	-	tig0031362:381-400	None:intergenic	25.0%
!!!	AACCTAAACTCAAGATTTTT+TGG	+	tig0031362:381-400	Msa1446410:intron	25.0%
!!!	TAAAATTTGGGTCAGTTTTT+TGG	+	tig0031362:785-804	Msa1446410:three_prime_UTR	25.0%
!!	CATTTTCTTCTAGTATGTTA+CGG	+	tig0031362:819-838	Msa1446410:three_prime_UTR	25.0%
!!	ATTTTCTTCTAGTATGTTAC+GGG	+	tig0031362:820-839	Msa1446410:three_prime_UTR	25.0%
!!	AAAAATCTTGAGTTTAGGTT+AGG	-	tig0031362:381-400	None:intergenic	25.0%
!!!	AACCTAAACTCAAGATTTTT+TGG	+	tig0031362:381-400	Msa1446410:intron	25.0%
!!!	TAAAATTTGGGTCAGTTTTT+TGG	+	tig0031362:785-804	Msa1446410:three_prime_UTR	25.0%
!!	CATTTTCTTCTAGTATGTTA+CGG	+	tig0031362:819-838	Msa1446410:three_prime_UTR	25.0%
!!	ATTTTCTTCTAGTATGTTAC+GGG	+	tig0031362:820-839	Msa1446410:three_prime_UTR	25.0%
	TGCCAAAAAATCTTGAGTTT+AGG	-	tig0031362:386-405	None:intergenic	30.0%
	AGGGAAGTAAAATTAACTGT+GGG	-	tig0031362:755-774	None:intergenic	30.0%
	AAGGGAAGTAAAATTAACTG+TGG	-	tig0031362:756-775	None:intergenic	30.0%
!	ACTGACCCAAATTTTACTTT+CGG	-	tig0031362:781-800	None:intergenic	30.0%
	GAAATTAAACCATGGTTAAC+TGG	-	tig0031362:980-999	None:intergenic	30.0%
	TGCCAAAAAATCTTGAGTTT+AGG	-	tig0031362:386-405	None:intergenic	30.0%
	AGGGAAGTAAAATTAACTGT+GGG	-	tig0031362:755-774	None:intergenic	30.0%
	AAGGGAAGTAAAATTAACTG+TGG	-	tig0031362:756-775	None:intergenic	30.0%
!	ACTGACCCAAATTTTACTTT+CGG	-	tig0031362:781-800	None:intergenic	30.0%
	GAAATTAAACCATGGTTAAC+TGG	-	tig0031362:980-999	None:intergenic	30.0%
	AATGTTCTTTACCAGCTTCT+GGG	-	tig0031362:330-349	None:intergenic	35.0%
	AAATGTTCTTTACCAGCTTC+TGG	-	tig0031362:331-350	None:intergenic	35.0%
	GAGTGTAGTAATGATGTCTT+GGG	-	tig0031362:499-518	None:intergenic	35.0%
	TGAGTGTAGTAATGATGTCT+TGG	-	tig0031362:500-519	None:intergenic	35.0%
	TAGTGTATTCTTTCAGTTGC+AGG	+	tig0031362:620-639	Msa1446410:intron	35.0%
	AGTGTATTCTTTCAGTTGCA+GGG	+	tig0031362:621-640	Msa1446410:intron	35.0%
	GGAAGTAAAATTAACTGTGG+GGG	-	tig0031362:753-772	None:intergenic	35.0%
	GGGAAGTAAAATTAACTGTG+GGG	-	tig0031362:754-773	None:intergenic	35.0%
!	CAAATTTTACTTTCGGGGAA+GGG	-	tig0031362:774-793	None:intergenic	35.0%
	CTTCCCCGAAAGTAAAATTT+GGG	+	tig0031362:773-792	Msa1446410:three_prime_UTR	35.0%
!	TGACCCAAATTTTACTTTCG+GGG	-	tig0031362:779-798	None:intergenic	35.0%
!	CTGACCCAAATTTTACTTTC+GGG	-	tig0031362:780-799	None:intergenic	35.0%
!!	GGTGCTTTGATTTCTAGTAT+AGG	+	tig0031362:1044-1063	Msa1446410:three_prime_UTR	35.0%
	AATGTTCTTTACCAGCTTCT+GGG	-	tig0031362:330-349	None:intergenic	35.0%
	AAATGTTCTTTACCAGCTTC+TGG	-	tig0031362:331-350	None:intergenic	35.0%
	GAGTGTAGTAATGATGTCTT+GGG	-	tig0031362:499-518	None:intergenic	35.0%
	TGAGTGTAGTAATGATGTCT+TGG	-	tig0031362:500-519	None:intergenic	35.0%
	TAGTGTATTCTTTCAGTTGC+AGG	+	tig0031362:620-639	Msa1446410:intron	35.0%
	AGTGTATTCTTTCAGTTGCA+GGG	+	tig0031362:621-640	Msa1446410:intron	35.0%
	GGAAGTAAAATTAACTGTGG+GGG	-	tig0031362:753-772	None:intergenic	35.0%
	GGGAAGTAAAATTAACTGTG+GGG	-	tig0031362:754-773	None:intergenic	35.0%
!	CAAATTTTACTTTCGGGGAA+GGG	-	tig0031362:774-793	None:intergenic	35.0%
	CTTCCCCGAAAGTAAAATTT+GGG	+	tig0031362:773-792	Msa1446410:three_prime_UTR	35.0%
!	TGACCCAAATTTTACTTTCG+GGG	-	tig0031362:779-798	None:intergenic	35.0%
!	CTGACCCAAATTTTACTTTC+GGG	-	tig0031362:780-799	None:intergenic	35.0%
!!	GGTGCTTTGATTTCTAGTAT+AGG	+	tig0031362:1044-1063	Msa1446410:three_prime_UTR	35.0%
!	CTTTTATAGAGAACCCGAAG+AGG	+	tig0031362:141-160	Msa1446410:CDS	40.0%
	ATGTTCTTTACCAGCTTCTG+GGG	-	tig0031362:329-348	None:intergenic	40.0%
	GTGTATTCTTTCAGTTGCAG+GGG	+	tig0031362:622-641	Msa1446410:intron	40.0%
	ACAGATTCAATTCCAGGAGT+GGG	-	tig0031362:683-702	None:intergenic	40.0%
	ATTGAATCTGTGACAGCAAC+TGG	+	tig0031362:692-711	Msa1446410:CDS	40.0%
!	CCAAATTTTACTTTCGGGGA+AGG	-	tig0031362:775-794	None:intergenic	40.0%
	CCTTCCCCGAAAGTAAAATT+TGG	+	tig0031362:772-791	Msa1446410:three_prime_UTR	40.0%
	TTCTTCTAGTATGTTACGGG+TGG	+	tig0031362:823-842	Msa1446410:three_prime_UTR	40.0%
	CAACTTACTCCAGTTAACCA+TGG	+	tig0031362:968-987	Msa1446410:three_prime_UTR	40.0%
!	CTTTTATAGAGAACCCGAAG+AGG	+	tig0031362:141-160	Msa1446410:CDS	40.0%
	ATGTTCTTTACCAGCTTCTG+GGG	-	tig0031362:329-348	None:intergenic	40.0%
	GTGTATTCTTTCAGTTGCAG+GGG	+	tig0031362:622-641	Msa1446410:intron	40.0%
	ACAGATTCAATTCCAGGAGT+GGG	-	tig0031362:683-702	None:intergenic	40.0%
	ATTGAATCTGTGACAGCAAC+TGG	+	tig0031362:692-711	Msa1446410:CDS	40.0%
!	CCAAATTTTACTTTCGGGGA+AGG	-	tig0031362:775-794	None:intergenic	40.0%
	CCTTCCCCGAAAGTAAAATT+TGG	+	tig0031362:772-791	Msa1446410:three_prime_UTR	40.0%
	TTCTTCTAGTATGTTACGGG+TGG	+	tig0031362:823-842	Msa1446410:three_prime_UTR	40.0%
	CAACTTACTCCAGTTAACCA+TGG	+	tig0031362:968-987	Msa1446410:three_prime_UTR	40.0%
!	GCAATGGCATAATCTAGAGC+AGG	-	tig0031362:193-212	None:intergenic	45.0%
!	ACCAGCATTGAAGTCAGCAA+TGG	-	tig0031362:209-228	None:intergenic	45.0%
!!	ATTGCTGACTTCAATGCTGG+TGG	+	tig0031362:208-227	Msa1446410:CDS	45.0%
	CACAGATTCAATTCCAGGAG+TGG	-	tig0031362:684-703	None:intergenic	45.0%
	GCTGTCACAGATTCAATTCC+AGG	-	tig0031362:689-708	None:intergenic	45.0%
	CAACACGTATGCCAAACAAG+TGG	-	tig0031362:940-959	None:intergenic	45.0%
!	GCAATGGCATAATCTAGAGC+AGG	-	tig0031362:193-212	None:intergenic	45.0%
!	ACCAGCATTGAAGTCAGCAA+TGG	-	tig0031362:209-228	None:intergenic	45.0%
!!	ATTGCTGACTTCAATGCTGG+TGG	+	tig0031362:208-227	Msa1446410:CDS	45.0%
	CACAGATTCAATTCCAGGAG+TGG	-	tig0031362:684-703	None:intergenic	45.0%
	GCTGTCACAGATTCAATTCC+AGG	-	tig0031362:689-708	None:intergenic	45.0%
	CAACACGTATGCCAAACAAG+TGG	-	tig0031362:940-959	None:intergenic	45.0%
	TTCATCCTCCTCTTGCTCCT+TGG	-	tig0031362:167-186	None:intergenic	50.0%
!!	GCCATTGCTGACTTCAATGC+TGG	+	tig0031362:205-224	Msa1446410:CDS	50.0%
	AATGCTGGTGGTCCATCTGA+TGG	+	tig0031362:220-239	Msa1446410:CDS	50.0%
	CATGGCTGCTCAATTGCAGT+AGG	-	tig0031362:253-272	None:intergenic	50.0%
	CTACTGCAATTGAGCAGCCA+TGG	+	tig0031362:251-270	Msa1446410:CDS	50.0%
	TTCTTTCAGTTGCAGGGGAC+TGG	+	tig0031362:627-646	Msa1446410:intron	50.0%
	TCTTTCAGTTGCAGGGGACT+GGG	+	tig0031362:628-647	Msa1446410:intron	50.0%
!!	CCAGGAGTGGGAATTTGTTG+CGG	-	tig0031362:671-690	None:intergenic	50.0%
	AATCTGTGACAGCAACTGGC+TGG	+	tig0031362:696-715	Msa1446410:CDS	50.0%
	ATCTGTGACAGCAACTGGCT+GGG	+	tig0031362:697-716	Msa1446410:CDS	50.0%
	GCATTTCGCCTCCACTTGTT+TGG	+	tig0031362:926-945	Msa1446410:three_prime_UTR	50.0%
	CACGTATGCCAAACAAGTGG+AGG	-	tig0031362:937-956	None:intergenic	50.0%
	TTCATCCTCCTCTTGCTCCT+TGG	-	tig0031362:167-186	None:intergenic	50.0%
!!	GCCATTGCTGACTTCAATGC+TGG	+	tig0031362:205-224	Msa1446410:CDS	50.0%
	AATGCTGGTGGTCCATCTGA+TGG	+	tig0031362:220-239	Msa1446410:CDS	50.0%
	CATGGCTGCTCAATTGCAGT+AGG	-	tig0031362:253-272	None:intergenic	50.0%
	CTACTGCAATTGAGCAGCCA+TGG	+	tig0031362:251-270	Msa1446410:CDS	50.0%
	TTCTTTCAGTTGCAGGGGAC+TGG	+	tig0031362:627-646	Msa1446410:intron	50.0%
	TCTTTCAGTTGCAGGGGACT+GGG	+	tig0031362:628-647	Msa1446410:intron	50.0%
!!	CCAGGAGTGGGAATTTGTTG+CGG	-	tig0031362:671-690	None:intergenic	50.0%
	AATCTGTGACAGCAACTGGC+TGG	+	tig0031362:696-715	Msa1446410:CDS	50.0%
	ATCTGTGACAGCAACTGGCT+GGG	+	tig0031362:697-716	Msa1446410:CDS	50.0%
	GCATTTCGCCTCCACTTGTT+TGG	+	tig0031362:926-945	Msa1446410:three_prime_UTR	50.0%
	CACGTATGCCAAACAAGTGG+AGG	-	tig0031362:937-956	None:intergenic	50.0%
	TAGAGAACCCGAAGAGGCCA+AGG	+	tig0031362:147-166	Msa1446410:CDS	55.0%
	TCTTGCTCCTTGGCCTCTTC+GGG	-	tig0031362:157-176	None:intergenic	55.0%
	CTCTTGCTCCTTGGCCTCTT+CGG	-	tig0031362:158-177	None:intergenic	55.0%
	GTGGTCCATCTGATGGTCAG+TGG	+	tig0031362:227-246	Msa1446410:CDS	55.0%
	GTAGGCCACTGACCATCAGA+TGG	-	tig0031362:235-254	None:intergenic	55.0%
!!	TGTGGTGCTGCATCAGTCCA+TGG	-	tig0031362:271-290	None:intergenic	55.0%
	ACACCAGGAGCTGCTGGAAT+AGG	-	tig0031362:295-314	None:intergenic	55.0%
!	AGCAGCTCCTGGTGTCAACT+GGG	+	tig0031362:300-319	Msa1446410:CDS	55.0%
	CTTTCAGTTGCAGGGGACTG+GGG	+	tig0031362:629-648	Msa1446410:intron	55.0%
!!	GTGGGAATTTGTTGCGGTGG+TGG	-	tig0031362:665-684	None:intergenic	55.0%
!!	GGAGTGGGAATTTGTTGCGG+TGG	-	tig0031362:668-687	None:intergenic	55.0%
	CCGCAACAAATTCCCACTCC+TGG	+	tig0031362:668-687	Msa1446410:CDS	55.0%
	TAGAGAACCCGAAGAGGCCA+AGG	+	tig0031362:147-166	Msa1446410:CDS	55.0%
	TCTTGCTCCTTGGCCTCTTC+GGG	-	tig0031362:157-176	None:intergenic	55.0%
	CTCTTGCTCCTTGGCCTCTT+CGG	-	tig0031362:158-177	None:intergenic	55.0%
	GTGGTCCATCTGATGGTCAG+TGG	+	tig0031362:227-246	Msa1446410:CDS	55.0%
	GTAGGCCACTGACCATCAGA+TGG	-	tig0031362:235-254	None:intergenic	55.0%
!!	TGTGGTGCTGCATCAGTCCA+TGG	-	tig0031362:271-290	None:intergenic	55.0%
	ACACCAGGAGCTGCTGGAAT+AGG	-	tig0031362:295-314	None:intergenic	55.0%
!	AGCAGCTCCTGGTGTCAACT+GGG	+	tig0031362:300-319	Msa1446410:CDS	55.0%
	CTTTCAGTTGCAGGGGACTG+GGG	+	tig0031362:629-648	Msa1446410:intron	55.0%
!!	GTGGGAATTTGTTGCGGTGG+TGG	-	tig0031362:665-684	None:intergenic	55.0%
!!	GGAGTGGGAATTTGTTGCGG+TGG	-	tig0031362:668-687	None:intergenic	55.0%
	CCGCAACAAATTCCCACTCC+TGG	+	tig0031362:668-687	Msa1446410:CDS	55.0%
	CGAAGAGGCCAAGGAGCAAG+AGG	+	tig0031362:156-175	Msa1446410:CDS	60.0%
	AGAGGCCAAGGAGCAAGAGG+AGG	+	tig0031362:159-178	Msa1446410:CDS	60.0%
	GGAGCTGCTGGAATAGGCTG+TGG	-	tig0031362:289-308	None:intergenic	60.0%
	CAGCCTATTCCAGCAGCTCC+TGG	+	tig0031362:289-308	Msa1446410:CDS	60.0%
	CAGTTGACACCAGGAGCTGC+TGG	-	tig0031362:301-320	None:intergenic	60.0%
!	CAGCAGCTCCTGGTGTCAAC+TGG	+	tig0031362:299-318	Msa1446410:CDS	60.0%
	CGAAGAGGCCAAGGAGCAAG+AGG	+	tig0031362:156-175	Msa1446410:CDS	60.0%
	AGAGGCCAAGGAGCAAGAGG+AGG	+	tig0031362:159-178	Msa1446410:CDS	60.0%
	GGAGCTGCTGGAATAGGCTG+TGG	-	tig0031362:289-308	None:intergenic	60.0%
	CAGCCTATTCCAGCAGCTCC+TGG	+	tig0031362:289-308	Msa1446410:CDS	60.0%
	CAGTTGACACCAGGAGCTGC+TGG	-	tig0031362:301-320	None:intergenic	60.0%
!	CAGCAGCTCCTGGTGTCAAC+TGG	+	tig0031362:299-318	Msa1446410:CDS	60.0%
	AACTGGGCTGCCCCAGAAGC+TGG	+	tig0031362:316-335	Msa1446410:CDS	65.0%
	AACTGGGCTGCCCCAGAAGC+TGG	+	tig0031362:316-335	Msa1446410:CDS	65.0%
	GGGGCAGCCCAGTTGACACC+AGG	-	tig0031362:310-329	None:intergenic	70.0%
	GGGGCAGCCCAGTTGACACC+AGG	-	tig0031362:310-329	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
tig0031362	gene	127	1067	127	ID=Msa1446410;Name=Msa1446410
tig0031362	mRNA	127	1067	127	ID=Msa1446410-mRNA-1;Parent=Msa1446410;Name=Msa1446410-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|1\|0.5\|1\|1\|1\|2\|343\|99
tig0031362	exon	127	337	127	ID=Msa1446410-mRNA-1:exon:15403;Parent=Msa1446410-mRNA-1
tig0031362	exon	636	1067	636	ID=Msa1446410-mRNA-1:exon:15404;Parent=Msa1446410-mRNA-1
tig0031362	CDS	127	337	127	ID=Msa1446410-mRNA-1:cds;Parent=Msa1446410-mRNA-1
tig0031362	CDS	636	724	636	ID=Msa1446410-mRNA-1:cds;Parent=Msa1446410-mRNA-1
tig0031362	three_prime_UTR	725	1067	725	ID=Msa1446410-mRNA-1:three_prime_utr;Parent=Msa1446410-mRNA-1

Gene Sequence	>Msa1446410 CAGGTTGATCTATTCTTTTATAGAGAACCCGAAGAGGCCAAGGAGCAAGAGGAGGATGAAGTTCCTGCTCTAGATTATGCCATTGCTGACTTCAATGCTGGTGGTCCATCTGATGGTCAGTGGCCTACTGCAATTGAGCAGCCATGGACTGATGCAGCACCACAGCCTATTCCAGCAGCTCCTGGTGTCAACTGGGCTGCCCCAGAAGCTGTTGCAGGGGACTGGGGTGAAGCTGTACCACCACCGCAACAAATTCCCACTCCTGGAATTGAATCTGTGACAGCAACTGGCTGGGATTAA
Protein sequence	>Msa1446410 QVDLFFYREPEEAKEQEEDEVPALDYAIADFNAGGPSDGQWPTAIEQPWTDAAPQPIPAAPGVNWAAPEAVAGDWGEAVPPPQQIPTPGIESVTATGWD*