AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0001760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001760 MtrunA17_Chr1g0161301 94.662 281 9 3 1 279 1 277 0.0 524
Msa0001760 MtrunA17_Chr8g0391761 99.394 165 1 0 115 279 20 184 1.09e-117 335
Msa0001760 MtrunA17_Chr4g0047041 32.727 165 94 4 91 246 147 303 3.02e-15 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001760 AT3G57490.1 92.308 221 17 0 45 265 41 261 3.27e-152 426
Msa0001760 AT2G41840.1 90.308 227 19 1 44 270 49 272 5.55e-151 423
Msa0001760 AT1G58684.1 90.222 225 22 0 45 269 49 273 3.26e-150 421
Msa0001760 AT1G59359.1 90.222 225 22 0 45 269 49 273 3.26e-150 421
Msa0001760 AT1G58983.1 90.222 225 22 0 45 269 49 273 3.26e-150 421
Msa0001760 AT1G58380.1 89.823 226 23 0 44 269 48 273 5.00e-150 421
Msa0001760 AT2G33800.1 29.530 149 97 2 91 239 147 287 3.73e-14 71.6

Find 123 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAACTGAAACTAGCTTCTT+TGG 0.268815 1_1:-3481490 None:intergenic
CTTGTCTCCTTCCAGAATTC+AGG 0.269661 1_1:-3481169 None:intergenic
TCCAGTGAGGAGAGGTTATT+GGG 0.276824 1_1:+3480136 Msa0001760:CDS
CCTCCGCCCTTTCTTCTTCA+AGG 0.277743 1_1:-3481258 None:intergenic
GATTATTATAATTGCATGTT+TGG 0.282030 1_1:-3481628 None:intergenic
GACGAAATTTCCAAGGGTTT+TGG 0.292589 1_1:-3480336 None:intergenic
ATGCTGGCTTACATTGGTTT+TGG 0.297467 1_1:+3481595 Msa0001760:three_prime_UTR
GCAAACTGCAAAACCTTCTT+AGG 0.306095 1_1:-3480275 None:intergenic
ACTGTTCCTTGTAAGGTTAC+TGG 0.306147 1_1:+3480182 Msa0001760:CDS
TAATTGCATGTTTGGAATCA+TGG 0.308568 1_1:-3481620 None:intergenic
GTTCCTGCTCCTCGGGGTTC+TGG 0.312116 1_1:+3480233 Msa0001760:CDS
AAATGCAGGAAACTATAAAT+TGG 0.317729 1_1:-3481391 None:intergenic
TTCCAGTGAGGAGAGGTTAT+TGG 0.329562 1_1:+3480135 Msa0001760:CDS
GGTGGAGATCGTGGTGGTTT+TGG 0.346359 1_1:+3479693 Msa0001760:CDS
ATACTCTTGGAATGGAGATT+TGG 0.351395 1_1:-3481197 None:intergenic
TCGTATGGTTCCTGCTCCTC+GGG 0.371220 1_1:+3480226 Msa0001760:CDS
GAGGCTTGAAGTTGAAGTTT+TGG 0.374425 1_1:+3481277 Msa0001760:exon
TTCTGGTATTGTTGCTGCTA+GGG 0.377258 1_1:+3480250 Msa0001760:CDS
TTCGTATGGTTCCTGCTCCT+CGG 0.380151 1_1:+3480225 Msa0001760:CDS
TATTTCAAAATAAATTCTTA+AGG 0.380566 1_1:-3481650 None:intergenic
GCCCGGGTTTGTTTCTGAAC+CGG 0.384932 1_1:-3479978 None:intergenic
AAACGGCAACCGAATGAGTT+TGG 0.388919 1_1:-3479635 None:intergenic
GCCACACACTGTTCCTTGTA+AGG 0.396169 1_1:+3480175 Msa0001760:CDS
ATGATTTGATGCTCCTTGAT+TGG 0.409887 1_1:-3479906 None:intergenic
CCACAACAAAAGCCTTGAAC+CGG 0.415813 1_1:-3480013 None:intergenic
TGCTGCTAGGGTTCCTAAGA+AGG 0.419749 1_1:+3480262 Msa0001760:CDS
GACGCGAAGAAGAAGAGAAA+TGG 0.420048 1_1:+3479805 Msa0001760:CDS
GATAGATCTGTTCAAGGCTT+CGG 0.428013 1_1:-3479872 None:intergenic
CCAACAGATCAGTATACTCT+TGG 0.439572 1_1:-3481210 None:intergenic
TTGTTGTAGCCAAACTCATT+CGG 0.440457 1_1:+3479626 Msa0001760:five_prime_UTR
TGATTTGATGCTCCTTGATT+GGG 0.442318 1_1:-3479905 None:intergenic
AAGATGCCAATCTGCATGTA+TGG 0.444321 1_1:+3481554 Msa0001760:three_prime_UTR
CTTTGATCCTTGAAGAAGAA+AGG 0.447076 1_1:+3481251 Msa0001760:CDS
CACTTTCCAGTAACCTTACA+AGG 0.448418 1_1:-3480188 None:intergenic
CGTGGTGGTCGTCGTAGAGC+TGG 0.451382 1_1:+3479777 Msa0001760:CDS
GTTCTGGTATTGTTGCTGCT+AGG 0.452667 1_1:+3480249 Msa0001760:CDS
CCCGGGCTGGTCAGAGAACC+CGG 0.453571 1_1:+3479994 Msa0001760:CDS
TCTTTGGCAAGGTGAGGATA+AGG 0.461791 1_1:-3481474 None:intergenic
AGTTATAATTACTAGTTCCT+AGG 0.463300 1_1:-3481333 None:intergenic
TGGTCAGAGAACCCGGTTCA+AGG 0.464046 1_1:+3480001 Msa0001760:CDS
CCGGGTTCTCTGACCAGCCC+GGG 0.469594 1_1:-3479994 None:intergenic
ACCGGGTTCTCTGACCAGCC+CGG 0.472370 1_1:-3479995 None:intergenic
GTTGTTTCCTTCTGTACTGA+AGG 0.472765 1_1:+3481368 Msa0001760:three_prime_UTR
AATGAAGATAGATCTGTTCA+AGG 0.480151 1_1:-3479878 None:intergenic
ATACCAGAACCCCGAGGAGC+AGG 0.487255 1_1:-3480236 None:intergenic
CAAAGCCTTAGCAGTTGGCT+TGG 0.489306 1_1:-3481233 None:intergenic
AACAATGGTCACGTTGGTCT+TGG 0.495777 1_1:+3480044 Msa0001760:CDS
CCCCAATAACCTCTCCTCAC+TGG 0.498943 1_1:-3480137 None:intergenic
ACGCGAAGAAGAAGAGAAAT+GGG 0.506516 1_1:+3479806 Msa0001760:CDS
CGGGGATCCACCAAAACCCT+TGG 0.507607 1_1:+3480326 Msa0001760:CDS
TGCCAAATGCCAAGTAAAGA+TGG 0.508834 1_1:-3481716 None:intergenic
GAAGTAGCTACTGCGATTCG+TGG 0.513941 1_1:+3480083 Msa0001760:CDS
CTGAATCCATACATGCAGAT+TGG 0.514597 1_1:-3481560 None:intergenic
TCTTCATTCTCTCCCAATCA+AGG 0.515383 1_1:+3479893 Msa0001760:CDS
GACTGTTTGATGAAAACCTA+CGG 0.523763 1_1:+3481136 Msa0001760:CDS
TCAGAGTTGTGCAAATATGC+TGG 0.524704 1_1:+3481579 Msa0001760:three_prime_UTR
GATTCGTGGTGCTATTATCC+TGG 0.526761 1_1:+3480097 Msa0001760:CDS
TGGGTTCCAGTGACCAAGCT+AGG 0.527015 1_1:+3479825 Msa0001760:CDS
AGGATCAAAGCCTTAGCAGT+TGG 0.528734 1_1:-3481238 None:intergenic
TGGTTCTGTTACTGTTCGTA+TGG 0.533362 1_1:+3480211 Msa0001760:CDS
AGAGGTGGTCGTGGTGGACG+TGG 0.534621 1_1:+3479744 Msa0001760:CDS
GAATCACACTCAGCTTAGCC+AGG 0.535828 1_1:-3480115 None:intergenic
TTTCATCAAACAGTCAAAAG+TGG 0.538001 1_1:-3481128 None:intergenic
GGTGGTGACAGAGGTGGTCG+TGG 0.538425 1_1:+3479735 Msa0001760:CDS
TTTGATCCTTGAAGAAGAAA+GGG 0.538675 1_1:+3481252 Msa0001760:CDS
GGACGTGGTGACAGAGGTCG+TGG 0.539300 1_1:+3479759 Msa0001760:CDS
CTTCACGAGACGACCTAGCT+TGG 0.541068 1_1:-3479838 None:intergenic
CCAAGAGTATACTGATCTGT+TGG 0.544918 1_1:+3481210 Msa0001760:CDS
AGACGACCTAGCTTGGTCAC+TGG 0.551274 1_1:-3479831 None:intergenic
GTTCAGAAACAAACCCGGGC+TGG 0.552874 1_1:+3479981 Msa0001760:CDS
AAACCTTGACGAAATTTCCA+AGG 0.552890 1_1:-3480343 None:intergenic
CGCAAGGATGAAATGAAAAG+AGG 0.555436 1_1:-3481692 None:intergenic
GCAAATATGCTGGCTTACAT+TGG 0.559428 1_1:+3481589 Msa0001760:three_prime_UTR
GTTGGCCAAGCCAACTGCTA+AGG 0.561111 1_1:+3481228 Msa0001760:CDS
GGTTATTGGGGTAACAAGAT+CGG 0.562624 1_1:+3480149 Msa0001760:CDS
CCTCGTGGGTCCCACTCTCA+AGG 0.569047 1_1:+3479935 Msa0001760:CDS
AACCTTGACGAAATTTCCAA+GGG 0.572511 1_1:-3480342 None:intergenic
CACAACAAAAGCCTTGAACC+GGG 0.573291 1_1:-3480012 None:intergenic
CTAGCTTCTTTGGCAAGGTG+AGG 0.574116 1_1:-3481480 None:intergenic
GGGTCCCACTCTCAAGGATG+AGG 0.575792 1_1:+3479941 Msa0001760:CDS
ATCACCTCATCCTTGAGAGT+GGG 0.578711 1_1:-3479945 None:intergenic
CATCACCTCATCCTTGAGAG+TGG 0.579578 1_1:-3479946 None:intergenic
TGAAACTAGCTTCTTTGGCA+AGG 0.585993 1_1:-3481485 None:intergenic
TCTAACACCTGAATTCTGGA+AGG 0.587404 1_1:+3481162 Msa0001760:CDS
CTGAATTCTGGAAGGAGACA+AGG 0.587850 1_1:+3481170 Msa0001760:CDS
AAATTGGCCTTCAGTACAGA+AGG 0.589342 1_1:-3481375 None:intergenic
TGTAAGGTTACTGGAAAGTG+TGG 0.590089 1_1:+3480191 Msa0001760:CDS
AGATCAGTATACTCTTGGAA+TGG 0.591366 1_1:-3481205 None:intergenic
CTAGGTCGTCTCGTGAAGGA+AGG 0.594091 1_1:+3479843 Msa0001760:CDS
TTCAGGTGTTAGAAAACCGT+AGG 0.600291 1_1:-3481152 None:intergenic
AACCCTTGGAAATTTCGTCA+AGG 0.601072 1_1:+3480340 Msa0001760:CDS
TGCCGGTTCAGAAACAAACC+CGG 0.601185 1_1:+3479976 Msa0001760:CDS
GCCAAGTAAAGATGGTCGCA+AGG 0.602863 1_1:-3481708 None:intergenic
GGTGGTCGTCGTAGAGCTGG+AGG 0.613793 1_1:+3479780 Msa0001760:CDS
GGAGGTCGTGGTGGTGACAG+AGG 0.615640 1_1:+3479726 Msa0001760:CDS
GCCGGTTCAGAAACAAACCC+GGG 0.617531 1_1:+3479977 Msa0001760:CDS
GGTCGTGGTGGTGACAGAGG+TGG 0.620463 1_1:+3479729 Msa0001760:CDS
CAAGCTAGGTCGTCTCGTGA+AGG 0.627163 1_1:+3479839 Msa0001760:CDS
ACCTTACAAGGAACAGTGTG+TGG 0.631342 1_1:-3480176 None:intergenic
CGTATGGTTCCTGCTCCTCG+GGG 0.632180 1_1:+3480227 Msa0001760:CDS
GGTGACAGAGGTGGTCGTGG+TGG 0.633373 1_1:+3479738 Msa0001760:CDS
CCTTGAAGAAGAAAGGGCGG+AGG 0.634716 1_1:+3481258 Msa0001760:CDS
TCAAATCATCGATACCCTCG+TGG 0.638508 1_1:+3479920 Msa0001760:CDS
ATCAACAACATGGCTGAACG+TGG 0.644114 1_1:+3479672 Msa0001760:exon
TTCACATTTAATCAACAACA+TGG 0.644670 1_1:+3479662 Msa0001760:exon
GCTGAACGTGGTGGAGATCG+TGG 0.646255 1_1:+3479684 Msa0001760:CDS
TGAGGTGATGAAGATCATGC+CGG 0.655740 1_1:+3479959 Msa0001760:CDS
CGTGGTGGACGTGGTGACAG+AGG 0.656657 1_1:+3479753 Msa0001760:CDS
GAATGAGTTTGGCTACAACA+AGG 0.661987 1_1:-3479624 None:intergenic
CTTGAGAGTGGGACCCACGA+GGG 0.663874 1_1:-3479934 None:intergenic
AGTGTGATTCCAGTGAGGAG+AGG 0.664309 1_1:+3480128 Msa0001760:CDS
AACAACATGGCTGAACGTGG+TGG 0.670923 1_1:+3479675 Msa0001760:exon
GATCCTTGAAGAAGAAAGGG+CGG 0.672666 1_1:+3481255 Msa0001760:CDS
CCTTGAGAGTGGGACCCACG+AGG 0.674713 1_1:-3479935 None:intergenic
ATGTTGTTGATTAAATGTGA+AGG 0.679808 1_1:-3479660 None:intergenic
CAAATCATCGATACCCTCGT+GGG 0.682658 1_1:+3479921 Msa0001760:CDS
GTTGTGGTTGGTGATAACAA+TGG 0.690378 1_1:+3480029 Msa0001760:CDS
GGTGATAACAATGGTCACGT+TGG 0.691414 1_1:+3480038 Msa0001760:CDS
CGTGGTGACAGAGGTCGTGG+TGG 0.723864 1_1:+3479762 Msa0001760:CDS
AGCTGAGTGTGATTCCAGTG+AGG 0.730503 1_1:+3480123 Msa0001760:CDS
CCAGTGAGGAGAGGTTATTG+GGG 0.734558 1_1:+3480137 Msa0001760:CDS
GAACGTGGTGGAGATCGTGG+TGG 0.744959 1_1:+3479687 Msa0001760:CDS
GCAACAATACCAGAACCCCG+AGG 0.764619 1_1:-3480242 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTCAAAATAAATTCTTA+AGG - chr1_1:3481653-3481672 None:intergenic 10.0%
!! TATTTCAAAATAAATTCTTA+AGG - chr1_1:3481653-3481672 None:intergenic 10.0%
!!! TAGTTGTTTGAATTTTAATT+TGG + chr1_1:3480397-3480416 Msa0001760:intron 15.0%
!! ATGATATTAAAATGAGAAAA+TGG - chr1_1:3480743-3480762 None:intergenic 15.0%
!! TGTTTATTCAAAATAACAAT+AGG - chr1_1:3480791-3480810 None:intergenic 15.0%
!!! TAGTTGTTTGAATTTTAATT+TGG + chr1_1:3480397-3480416 Msa0001760:intron 15.0%
!! ATGATATTAAAATGAGAAAA+TGG - chr1_1:3480743-3480762 None:intergenic 15.0%
!! TGTTTATTCAAAATAACAAT+AGG - chr1_1:3480791-3480810 None:intergenic 15.0%
!!! ATGTGAATTGATTTTAAAGA+AGG + chr1_1:3480870-3480889 Msa0001760:intron 20.0%
!! GATAAATCATAAATTAGAGA+AGG - chr1_1:3481082-3481101 None:intergenic 20.0%
!!! TATTTTTCAACTTTGATGTT+TGG + chr1_1:3481416-3481435 Msa0001760:three_prime_UTR 20.0%
!! GATTATTATAATTGCATGTT+TGG - chr1_1:3481631-3481650 None:intergenic 20.0%
!!! ATGTGAATTGATTTTAAAGA+AGG + chr1_1:3480870-3480889 Msa0001760:intron 20.0%
!! GATAAATCATAAATTAGAGA+AGG - chr1_1:3481082-3481101 None:intergenic 20.0%
!!! TATTTTTCAACTTTGATGTT+TGG + chr1_1:3481416-3481435 Msa0001760:three_prime_UTR 20.0%
!! GATTATTATAATTGCATGTT+TGG - chr1_1:3481631-3481650 None:intergenic 20.0%
! GATTAAATGTGAAGGAAAAA+CGG - chr1_1:3479655-3479674 None:intergenic 25.0%
!! ATGTTGTTGATTAAATGTGA+AGG - chr1_1:3479663-3479682 None:intergenic 25.0%
! TTCACATTTAATCAACAACA+TGG + chr1_1:3479662-3479681 Msa0001760:exon 25.0%
!! TGAACTTTTGTGTATTGTTA+TGG + chr1_1:3480458-3480477 Msa0001760:intron 25.0%
!!! CATGGTTTCTTTATTTTAGA+CGG + chr1_1:3480494-3480513 Msa0001760:intron 25.0%
! TGTTAGAAGTTTATTGTTGT+TGG + chr1_1:3480525-3480544 Msa0001760:intron 25.0%
! ACTTTCAGTTGAACATAAAT+TGG - chr1_1:3480579-3480598 None:intergenic 25.0%
! GTTAAACTGTACTATTTATC+TGG + chr1_1:3480648-3480667 Msa0001760:intron 25.0%
! TATGAATCAAAATGCAAGTT+TGG - chr1_1:3480829-3480848 None:intergenic 25.0%
! AAAATGCACATACATAAGTT+TGG - chr1_1:3480897-3480916 None:intergenic 25.0%
!! TTATGTATGTGCATTTTGTA+TGG + chr1_1:3480900-3480919 Msa0001760:intron 25.0%
! TTCATAACAGACAAATTCTT+AGG - chr1_1:3480984-3481003 None:intergenic 25.0%
!!! GAATTGCAGTTTTTTTTAGT+TGG + chr1_1:3481001-3481020 Msa0001760:intron 25.0%
! AGTTATAATTACTAGTTCCT+AGG - chr1_1:3481336-3481355 None:intergenic 25.0%
! AAATGCAGGAAACTATAAAT+TGG - chr1_1:3481394-3481413 None:intergenic 25.0%
! AGTTGAAAAATACAAAATGC+AGG - chr1_1:3481408-3481427 None:intergenic 25.0%
! GATTAAATGTGAAGGAAAAA+CGG - chr1_1:3479655-3479674 None:intergenic 25.0%
!! ATGTTGTTGATTAAATGTGA+AGG - chr1_1:3479663-3479682 None:intergenic 25.0%
! TTCACATTTAATCAACAACA+TGG + chr1_1:3479662-3479681 Msa0001760:exon 25.0%
!! TGAACTTTTGTGTATTGTTA+TGG + chr1_1:3480458-3480477 Msa0001760:intron 25.0%
!!! CATGGTTTCTTTATTTTAGA+CGG + chr1_1:3480494-3480513 Msa0001760:intron 25.0%
! TGTTAGAAGTTTATTGTTGT+TGG + chr1_1:3480525-3480544 Msa0001760:intron 25.0%
! ACTTTCAGTTGAACATAAAT+TGG - chr1_1:3480579-3480598 None:intergenic 25.0%
! GTTAAACTGTACTATTTATC+TGG + chr1_1:3480648-3480667 Msa0001760:intron 25.0%
! TATGAATCAAAATGCAAGTT+TGG - chr1_1:3480829-3480848 None:intergenic 25.0%
! AAAATGCACATACATAAGTT+TGG - chr1_1:3480897-3480916 None:intergenic 25.0%
!! TTATGTATGTGCATTTTGTA+TGG + chr1_1:3480900-3480919 Msa0001760:intron 25.0%
! TTCATAACAGACAAATTCTT+AGG - chr1_1:3480984-3481003 None:intergenic 25.0%
!!! GAATTGCAGTTTTTTTTAGT+TGG + chr1_1:3481001-3481020 Msa0001760:intron 25.0%
! AGTTATAATTACTAGTTCCT+AGG - chr1_1:3481336-3481355 None:intergenic 25.0%
! AAATGCAGGAAACTATAAAT+TGG - chr1_1:3481394-3481413 None:intergenic 25.0%
! AGTTGAAAAATACAAAATGC+AGG - chr1_1:3481408-3481427 None:intergenic 25.0%
AATGAAGATAGATCTGTTCA+AGG - chr1_1:3479881-3479900 None:intergenic 30.0%
! TTGTTTGCTAAATTGACAGA+AGG + chr1_1:3480433-3480452 Msa0001760:intron 30.0%
TATGGCAATACTATGATACA+TGG + chr1_1:3480476-3480495 Msa0001760:intron 30.0%
TTGATTCATATTATCCCTGT+TGG + chr1_1:3480839-3480858 Msa0001760:intron 30.0%
TTTCATCAAACAGTCAAAAG+TGG - chr1_1:3481131-3481150 None:intergenic 30.0%
TTTGATCCTTGAAGAAGAAA+GGG + chr1_1:3481252-3481271 Msa0001760:CDS 30.0%
!!! AGTTGAAGTTTTGGTTTTGT+TGG + chr1_1:3481286-3481305 Msa0001760:three_prime_UTR 30.0%
! TAATTGCATGTTTGGAATCA+TGG - chr1_1:3481623-3481642 None:intergenic 30.0%
AATGAAGATAGATCTGTTCA+AGG - chr1_1:3479881-3479900 None:intergenic 30.0%
! TTGTTTGCTAAATTGACAGA+AGG + chr1_1:3480433-3480452 Msa0001760:intron 30.0%
TATGGCAATACTATGATACA+TGG + chr1_1:3480476-3480495 Msa0001760:intron 30.0%
TTGATTCATATTATCCCTGT+TGG + chr1_1:3480839-3480858 Msa0001760:intron 30.0%
TTTCATCAAACAGTCAAAAG+TGG - chr1_1:3481131-3481150 None:intergenic 30.0%
TTTGATCCTTGAAGAAGAAA+GGG + chr1_1:3481252-3481271 Msa0001760:CDS 30.0%
!!! AGTTGAAGTTTTGGTTTTGT+TGG + chr1_1:3481286-3481305 Msa0001760:three_prime_UTR 30.0%
! TAATTGCATGTTTGGAATCA+TGG - chr1_1:3481623-3481642 None:intergenic 30.0%
TTGTTGTAGCCAAACTCATT+CGG + chr1_1:3479626-3479645 Msa0001760:five_prime_UTR 35.0%
TGATTTGATGCTCCTTGATT+GGG - chr1_1:3479908-3479927 None:intergenic 35.0%
ATGATTTGATGCTCCTTGAT+TGG - chr1_1:3479909-3479928 None:intergenic 35.0%
AACCTTGACGAAATTTCCAA+GGG - chr1_1:3480345-3480364 None:intergenic 35.0%
AAACCTTGACGAAATTTCCA+AGG - chr1_1:3480346-3480365 None:intergenic 35.0%
!! TGTCTTGTTGTTTCATAGTG+CGG + chr1_1:3480762-3480781 Msa0001760:intron 35.0%
TCACATTCACAATACCAACA+GGG - chr1_1:3480856-3480875 None:intergenic 35.0%
TTCACATTCACAATACCAAC+AGG - chr1_1:3480857-3480876 None:intergenic 35.0%
! TTTTGTGTAGAACCATGCAA+TGG + chr1_1:3480943-3480962 Msa0001760:intron 35.0%
CAAAGAATATGTCCATTGCA+TGG - chr1_1:3480958-3480977 None:intergenic 35.0%
TTTAGTTGGCAACATTTGAC+TGG + chr1_1:3481015-3481034 Msa0001760:intron 35.0%
TTAGTTGGCAACATTTGACT+GGG + chr1_1:3481016-3481035 Msa0001760:intron 35.0%
! GCTGTGACATTTCATTTTAC+AGG + chr1_1:3481105-3481124 Msa0001760:intron 35.0%
GACTGTTTGATGAAAACCTA+CGG + chr1_1:3481136-3481155 Msa0001760:CDS 35.0%
! GTTTTCTAACACCTGAATTC+TGG + chr1_1:3481158-3481177 Msa0001760:CDS 35.0%
ATACTCTTGGAATGGAGATT+TGG - chr1_1:3481200-3481219 None:intergenic 35.0%
AGATCAGTATACTCTTGGAA+TGG - chr1_1:3481208-3481227 None:intergenic 35.0%
CTTTGATCCTTGAAGAAGAA+AGG + chr1_1:3481251-3481270 Msa0001760:CDS 35.0%
!!! TTGGTTTTGTTGGATGATCA+TGG + chr1_1:3481296-3481315 Msa0001760:three_prime_UTR 35.0%
!! TGGTGTGTTTTAAACATCCT+AGG + chr1_1:3481316-3481335 Msa0001760:three_prime_UTR 35.0%
! GAAACTGAAACTAGCTTCTT+TGG - chr1_1:3481493-3481512 None:intergenic 35.0%
TTGTTGTAGCCAAACTCATT+CGG + chr1_1:3479626-3479645 Msa0001760:five_prime_UTR 35.0%
TGATTTGATGCTCCTTGATT+GGG - chr1_1:3479908-3479927 None:intergenic 35.0%
ATGATTTGATGCTCCTTGAT+TGG - chr1_1:3479909-3479928 None:intergenic 35.0%
AACCTTGACGAAATTTCCAA+GGG - chr1_1:3480345-3480364 None:intergenic 35.0%
AAACCTTGACGAAATTTCCA+AGG - chr1_1:3480346-3480365 None:intergenic 35.0%
!! TGTCTTGTTGTTTCATAGTG+CGG + chr1_1:3480762-3480781 Msa0001760:intron 35.0%
TCACATTCACAATACCAACA+GGG - chr1_1:3480856-3480875 None:intergenic 35.0%
TTCACATTCACAATACCAAC+AGG - chr1_1:3480857-3480876 None:intergenic 35.0%
! TTTTGTGTAGAACCATGCAA+TGG + chr1_1:3480943-3480962 Msa0001760:intron 35.0%
CAAAGAATATGTCCATTGCA+TGG - chr1_1:3480958-3480977 None:intergenic 35.0%
TTTAGTTGGCAACATTTGAC+TGG + chr1_1:3481015-3481034 Msa0001760:intron 35.0%
TTAGTTGGCAACATTTGACT+GGG + chr1_1:3481016-3481035 Msa0001760:intron 35.0%
! GCTGTGACATTTCATTTTAC+AGG + chr1_1:3481105-3481124 Msa0001760:intron 35.0%
GACTGTTTGATGAAAACCTA+CGG + chr1_1:3481136-3481155 Msa0001760:CDS 35.0%
! GTTTTCTAACACCTGAATTC+TGG + chr1_1:3481158-3481177 Msa0001760:CDS 35.0%
ATACTCTTGGAATGGAGATT+TGG - chr1_1:3481200-3481219 None:intergenic 35.0%
AGATCAGTATACTCTTGGAA+TGG - chr1_1:3481208-3481227 None:intergenic 35.0%
CTTTGATCCTTGAAGAAGAA+AGG + chr1_1:3481251-3481270 Msa0001760:CDS 35.0%
!!! TTGGTTTTGTTGGATGATCA+TGG + chr1_1:3481296-3481315 Msa0001760:three_prime_UTR 35.0%
!! TGGTGTGTTTTAAACATCCT+AGG + chr1_1:3481316-3481335 Msa0001760:three_prime_UTR 35.0%
! GAAACTGAAACTAGCTTCTT+TGG - chr1_1:3481493-3481512 None:intergenic 35.0%
GAATGAGTTTGGCTACAACA+AGG - chr1_1:3479627-3479646 None:intergenic 40.0%
ACGCGAAGAAGAAGAGAAAT+GGG + chr1_1:3479806-3479825 Msa0001760:CDS 40.0%
GATAGATCTGTTCAAGGCTT+CGG - chr1_1:3479875-3479894 None:intergenic 40.0%
TCTTCATTCTCTCCCAATCA+AGG + chr1_1:3479893-3479912 Msa0001760:CDS 40.0%
!! TTCAAGGCTTTTGTTGTGGT+TGG + chr1_1:3480017-3480036 Msa0001760:CDS 40.0%
!! GTTGTGGTTGGTGATAACAA+TGG + chr1_1:3480029-3480048 Msa0001760:CDS 40.0%
GGTTATTGGGGTAACAAGAT+CGG + chr1_1:3480149-3480168 Msa0001760:CDS 40.0%
ACTGTTCCTTGTAAGGTTAC+TGG + chr1_1:3480182-3480201 Msa0001760:CDS 40.0%
CACTTTCCAGTAACCTTACA+AGG - chr1_1:3480191-3480210 None:intergenic 40.0%
TGTAAGGTTACTGGAAAGTG+TGG + chr1_1:3480191-3480210 Msa0001760:CDS 40.0%
! TGGTTCTGTTACTGTTCGTA+TGG + chr1_1:3480211-3480230 Msa0001760:CDS 40.0%
TTCTGGTATTGTTGCTGCTA+GGG + chr1_1:3480250-3480269 Msa0001760:CDS 40.0%
GCAAACTGCAAAACCTTCTT+AGG - chr1_1:3480278-3480297 None:intergenic 40.0%
! AAGAAGGTTTTGCAGTTTGC+TGG + chr1_1:3480278-3480297 Msa0001760:CDS 40.0%
! ATGATGTTTTCACTTCCTCC+CGG + chr1_1:3480306-3480325 Msa0001760:CDS 40.0%
!! GAAATTTCCAAGGGTTTTGG+TGG - chr1_1:3480336-3480355 None:intergenic 40.0%
! GACGAAATTTCCAAGGGTTT+TGG - chr1_1:3480339-3480358 None:intergenic 40.0%
AACCCTTGGAAATTTCGTCA+AGG + chr1_1:3480340-3480359 Msa0001760:CDS 40.0%
CTGGTTGAACAATAATTCCG+TGG + chr1_1:3480667-3480686 Msa0001760:intron 40.0%
TGTCGATGATTCATAGACCA+CGG - chr1_1:3480687-3480706 None:intergenic 40.0%
TTCAGGTGTTAGAAAACCGT+AGG - chr1_1:3481155-3481174 None:intergenic 40.0%
TCTAACACCTGAATTCTGGA+AGG + chr1_1:3481162-3481181 Msa0001760:CDS 40.0%
CCAACAGATCAGTATACTCT+TGG - chr1_1:3481213-3481232 None:intergenic 40.0%
! CCAAGAGTATACTGATCTGT+TGG + chr1_1:3481210-3481229 Msa0001760:CDS 40.0%
! GAGGCTTGAAGTTGAAGTTT+TGG + chr1_1:3481277-3481296 Msa0001760:exon 40.0%
! GTTGTTTCCTTCTGTACTGA+AGG + chr1_1:3481368-3481387 Msa0001760:three_prime_UTR 40.0%
!! AAATTGGCCTTCAGTACAGA+AGG - chr1_1:3481378-3481397 None:intergenic 40.0%
! TGAAACTAGCTTCTTTGGCA+AGG - chr1_1:3481488-3481507 None:intergenic 40.0%
AAGATGCCAATCTGCATGTA+TGG + chr1_1:3481554-3481573 Msa0001760:three_prime_UTR 40.0%
CTGAATCCATACATGCAGAT+TGG - chr1_1:3481563-3481582 None:intergenic 40.0%
TCAGAGTTGTGCAAATATGC+TGG + chr1_1:3481579-3481598 Msa0001760:three_prime_UTR 40.0%
!! GCAAATATGCTGGCTTACAT+TGG + chr1_1:3481589-3481608 Msa0001760:three_prime_UTR 40.0%
!!! ATGCTGGCTTACATTGGTTT+TGG + chr1_1:3481595-3481614 Msa0001760:three_prime_UTR 40.0%
CGCAAGGATGAAATGAAAAG+AGG - chr1_1:3481695-3481714 None:intergenic 40.0%
GAATGAGTTTGGCTACAACA+AGG - chr1_1:3479627-3479646 None:intergenic 40.0%
ACGCGAAGAAGAAGAGAAAT+GGG + chr1_1:3479806-3479825 Msa0001760:CDS 40.0%
GATAGATCTGTTCAAGGCTT+CGG - chr1_1:3479875-3479894 None:intergenic 40.0%
TCTTCATTCTCTCCCAATCA+AGG + chr1_1:3479893-3479912 Msa0001760:CDS 40.0%
!! TTCAAGGCTTTTGTTGTGGT+TGG + chr1_1:3480017-3480036 Msa0001760:CDS 40.0%
!! GTTGTGGTTGGTGATAACAA+TGG + chr1_1:3480029-3480048 Msa0001760:CDS 40.0%
GGTTATTGGGGTAACAAGAT+CGG + chr1_1:3480149-3480168 Msa0001760:CDS 40.0%
ACTGTTCCTTGTAAGGTTAC+TGG + chr1_1:3480182-3480201 Msa0001760:CDS 40.0%
CACTTTCCAGTAACCTTACA+AGG - chr1_1:3480191-3480210 None:intergenic 40.0%
TGTAAGGTTACTGGAAAGTG+TGG + chr1_1:3480191-3480210 Msa0001760:CDS 40.0%
! TGGTTCTGTTACTGTTCGTA+TGG + chr1_1:3480211-3480230 Msa0001760:CDS 40.0%
TTCTGGTATTGTTGCTGCTA+GGG + chr1_1:3480250-3480269 Msa0001760:CDS 40.0%
GCAAACTGCAAAACCTTCTT+AGG - chr1_1:3480278-3480297 None:intergenic 40.0%
! AAGAAGGTTTTGCAGTTTGC+TGG + chr1_1:3480278-3480297 Msa0001760:CDS 40.0%
! ATGATGTTTTCACTTCCTCC+CGG + chr1_1:3480306-3480325 Msa0001760:CDS 40.0%
!! GAAATTTCCAAGGGTTTTGG+TGG - chr1_1:3480336-3480355 None:intergenic 40.0%
! GACGAAATTTCCAAGGGTTT+TGG - chr1_1:3480339-3480358 None:intergenic 40.0%
AACCCTTGGAAATTTCGTCA+AGG + chr1_1:3480340-3480359 Msa0001760:CDS 40.0%
CTGGTTGAACAATAATTCCG+TGG + chr1_1:3480667-3480686 Msa0001760:intron 40.0%
TGTCGATGATTCATAGACCA+CGG - chr1_1:3480687-3480706 None:intergenic 40.0%
TTCAGGTGTTAGAAAACCGT+AGG - chr1_1:3481155-3481174 None:intergenic 40.0%
TCTAACACCTGAATTCTGGA+AGG + chr1_1:3481162-3481181 Msa0001760:CDS 40.0%
CCAACAGATCAGTATACTCT+TGG - chr1_1:3481213-3481232 None:intergenic 40.0%
! CCAAGAGTATACTGATCTGT+TGG + chr1_1:3481210-3481229 Msa0001760:CDS 40.0%
! GAGGCTTGAAGTTGAAGTTT+TGG + chr1_1:3481277-3481296 Msa0001760:exon 40.0%
! GTTGTTTCCTTCTGTACTGA+AGG + chr1_1:3481368-3481387 Msa0001760:three_prime_UTR 40.0%
!! AAATTGGCCTTCAGTACAGA+AGG - chr1_1:3481378-3481397 None:intergenic 40.0%
! TGAAACTAGCTTCTTTGGCA+AGG - chr1_1:3481488-3481507 None:intergenic 40.0%
AAGATGCCAATCTGCATGTA+TGG + chr1_1:3481554-3481573 Msa0001760:three_prime_UTR 40.0%
CTGAATCCATACATGCAGAT+TGG - chr1_1:3481563-3481582 None:intergenic 40.0%
TCAGAGTTGTGCAAATATGC+TGG + chr1_1:3481579-3481598 Msa0001760:three_prime_UTR 40.0%
!! GCAAATATGCTGGCTTACAT+TGG + chr1_1:3481589-3481608 Msa0001760:three_prime_UTR 40.0%
!!! ATGCTGGCTTACATTGGTTT+TGG + chr1_1:3481595-3481614 Msa0001760:three_prime_UTR 40.0%
CGCAAGGATGAAATGAAAAG+AGG - chr1_1:3481695-3481714 None:intergenic 40.0%
AAACGGCAACCGAATGAGTT+TGG - chr1_1:3479638-3479657 None:intergenic 45.0%
ATCAACAACATGGCTGAACG+TGG + chr1_1:3479672-3479691 Msa0001760:exon 45.0%
GACGCGAAGAAGAAGAGAAA+TGG + chr1_1:3479805-3479824 Msa0001760:CDS 45.0%
TCAAATCATCGATACCCTCG+TGG + chr1_1:3479920-3479939 Msa0001760:CDS 45.0%
CAAATCATCGATACCCTCGT+GGG + chr1_1:3479921-3479940 Msa0001760:CDS 45.0%
ATCACCTCATCCTTGAGAGT+GGG - chr1_1:3479948-3479967 None:intergenic 45.0%
TGAGGTGATGAAGATCATGC+CGG + chr1_1:3479959-3479978 Msa0001760:CDS 45.0%
CACAACAAAAGCCTTGAACC+GGG - chr1_1:3480015-3480034 None:intergenic 45.0%
CCACAACAAAAGCCTTGAAC+CGG - chr1_1:3480016-3480035 None:intergenic 45.0%
GGTGATAACAATGGTCACGT+TGG + chr1_1:3480038-3480057 Msa0001760:CDS 45.0%
! AACAATGGTCACGTTGGTCT+TGG + chr1_1:3480044-3480063 Msa0001760:CDS 45.0%
!! GATTCGTGGTGCTATTATCC+TGG + chr1_1:3480097-3480116 Msa0001760:CDS 45.0%
TTCCAGTGAGGAGAGGTTAT+TGG + chr1_1:3480135-3480154 Msa0001760:CDS 45.0%
TCCAGTGAGGAGAGGTTATT+GGG + chr1_1:3480136-3480155 Msa0001760:CDS 45.0%
ACCTTACAAGGAACAGTGTG+TGG - chr1_1:3480179-3480198 None:intergenic 45.0%
GTTCTGGTATTGTTGCTGCT+AGG + chr1_1:3480249-3480268 Msa0001760:CDS 45.0%
! TGATGTTTTCACTTCCTCCC+GGG + chr1_1:3480307-3480326 Msa0001760:CDS 45.0%
!! CTTGTTGTTTCATAGTGCGG+TGG + chr1_1:3480765-3480784 Msa0001760:intron 45.0%
CTTGTCTCCTTCCAGAATTC+AGG - chr1_1:3481172-3481191 None:intergenic 45.0%
! CTGAATTCTGGAAGGAGACA+AGG + chr1_1:3481170-3481189 Msa0001760:CDS 45.0%
AGGATCAAAGCCTTAGCAGT+TGG - chr1_1:3481241-3481260 None:intergenic 45.0%
GATCCTTGAAGAAGAAAGGG+CGG + chr1_1:3481255-3481274 Msa0001760:CDS 45.0%
TCTTTGGCAAGGTGAGGATA+AGG - chr1_1:3481477-3481496 None:intergenic 45.0%
AAACGGCAACCGAATGAGTT+TGG - chr1_1:3479638-3479657 None:intergenic 45.0%
ATCAACAACATGGCTGAACG+TGG + chr1_1:3479672-3479691 Msa0001760:exon 45.0%
GACGCGAAGAAGAAGAGAAA+TGG + chr1_1:3479805-3479824 Msa0001760:CDS 45.0%
TCAAATCATCGATACCCTCG+TGG + chr1_1:3479920-3479939 Msa0001760:CDS 45.0%
CAAATCATCGATACCCTCGT+GGG + chr1_1:3479921-3479940 Msa0001760:CDS 45.0%
ATCACCTCATCCTTGAGAGT+GGG - chr1_1:3479948-3479967 None:intergenic 45.0%
TGAGGTGATGAAGATCATGC+CGG + chr1_1:3479959-3479978 Msa0001760:CDS 45.0%
CACAACAAAAGCCTTGAACC+GGG - chr1_1:3480015-3480034 None:intergenic 45.0%
CCACAACAAAAGCCTTGAAC+CGG - chr1_1:3480016-3480035 None:intergenic 45.0%
GGTGATAACAATGGTCACGT+TGG + chr1_1:3480038-3480057 Msa0001760:CDS 45.0%
! AACAATGGTCACGTTGGTCT+TGG + chr1_1:3480044-3480063 Msa0001760:CDS 45.0%
!! GATTCGTGGTGCTATTATCC+TGG + chr1_1:3480097-3480116 Msa0001760:CDS 45.0%
TTCCAGTGAGGAGAGGTTAT+TGG + chr1_1:3480135-3480154 Msa0001760:CDS 45.0%
TCCAGTGAGGAGAGGTTATT+GGG + chr1_1:3480136-3480155 Msa0001760:CDS 45.0%
ACCTTACAAGGAACAGTGTG+TGG - chr1_1:3480179-3480198 None:intergenic 45.0%
GTTCTGGTATTGTTGCTGCT+AGG + chr1_1:3480249-3480268 Msa0001760:CDS 45.0%
! TGATGTTTTCACTTCCTCCC+GGG + chr1_1:3480307-3480326 Msa0001760:CDS 45.0%
!! CTTGTTGTTTCATAGTGCGG+TGG + chr1_1:3480765-3480784 Msa0001760:intron 45.0%
CTTGTCTCCTTCCAGAATTC+AGG - chr1_1:3481172-3481191 None:intergenic 45.0%
! CTGAATTCTGGAAGGAGACA+AGG + chr1_1:3481170-3481189 Msa0001760:CDS 45.0%
AGGATCAAAGCCTTAGCAGT+TGG - chr1_1:3481241-3481260 None:intergenic 45.0%
GATCCTTGAAGAAGAAAGGG+CGG + chr1_1:3481255-3481274 Msa0001760:CDS 45.0%
TCTTTGGCAAGGTGAGGATA+AGG - chr1_1:3481477-3481496 None:intergenic 45.0%
AACAACATGGCTGAACGTGG+TGG + chr1_1:3479675-3479694 Msa0001760:exon 50.0%
!!! GGTGGTTTTGGCAGTGGTTT+TGG + chr1_1:3479705-3479724 Msa0001760:CDS 50.0%
!!! GGTTTTGGCAGTGGTTTTGG+AGG + chr1_1:3479708-3479727 Msa0001760:CDS 50.0%
CATCACCTCATCCTTGAGAG+TGG - chr1_1:3479949-3479968 None:intergenic 50.0%
!! TGCCGGTTCAGAAACAAACC+CGG + chr1_1:3479976-3479995 Msa0001760:CDS 50.0%
! CCGGTTCAAGGCTTTTGTTG+TGG + chr1_1:3480013-3480032 Msa0001760:CDS 50.0%
GAAGTAGCTACTGCGATTCG+TGG + chr1_1:3480083-3480102 Msa0001760:CDS 50.0%
GAATCACACTCAGCTTAGCC+AGG - chr1_1:3480118-3480137 None:intergenic 50.0%
AGCTGAGTGTGATTCCAGTG+AGG + chr1_1:3480123-3480142 Msa0001760:CDS 50.0%
AGTGTGATTCCAGTGAGGAG+AGG + chr1_1:3480128-3480147 Msa0001760:CDS 50.0%
CCAGTGAGGAGAGGTTATTG+GGG + chr1_1:3480137-3480156 Msa0001760:CDS 50.0%
GCCACACACTGTTCCTTGTA+AGG + chr1_1:3480175-3480194 Msa0001760:CDS 50.0%
TTCGTATGGTTCCTGCTCCT+CGG + chr1_1:3480225-3480244 Msa0001760:CDS 50.0%
TGCTGCTAGGGTTCCTAAGA+AGG + chr1_1:3480262-3480281 Msa0001760:CDS 50.0%
! GATGTTTTCACTTCCTCCCG+GGG + chr1_1:3480308-3480327 Msa0001760:CDS 50.0%
CAAAGCCTTAGCAGTTGGCT+TGG - chr1_1:3481236-3481255 None:intergenic 50.0%
CTAGCTTCTTTGGCAAGGTG+AGG - chr1_1:3481483-3481502 None:intergenic 50.0%
AACAACATGGCTGAACGTGG+TGG + chr1_1:3479675-3479694 Msa0001760:exon 50.0%
!!! GGTGGTTTTGGCAGTGGTTT+TGG + chr1_1:3479705-3479724 Msa0001760:CDS 50.0%
!!! GGTTTTGGCAGTGGTTTTGG+AGG + chr1_1:3479708-3479727 Msa0001760:CDS 50.0%
CATCACCTCATCCTTGAGAG+TGG - chr1_1:3479949-3479968 None:intergenic 50.0%
!! TGCCGGTTCAGAAACAAACC+CGG + chr1_1:3479976-3479995 Msa0001760:CDS 50.0%
! CCGGTTCAAGGCTTTTGTTG+TGG + chr1_1:3480013-3480032 Msa0001760:CDS 50.0%
GAAGTAGCTACTGCGATTCG+TGG + chr1_1:3480083-3480102 Msa0001760:CDS 50.0%
GAATCACACTCAGCTTAGCC+AGG - chr1_1:3480118-3480137 None:intergenic 50.0%
AGCTGAGTGTGATTCCAGTG+AGG + chr1_1:3480123-3480142 Msa0001760:CDS 50.0%
AGTGTGATTCCAGTGAGGAG+AGG + chr1_1:3480128-3480147 Msa0001760:CDS 50.0%
CCAGTGAGGAGAGGTTATTG+GGG + chr1_1:3480137-3480156 Msa0001760:CDS 50.0%
GCCACACACTGTTCCTTGTA+AGG + chr1_1:3480175-3480194 Msa0001760:CDS 50.0%
TTCGTATGGTTCCTGCTCCT+CGG + chr1_1:3480225-3480244 Msa0001760:CDS 50.0%
TGCTGCTAGGGTTCCTAAGA+AGG + chr1_1:3480262-3480281 Msa0001760:CDS 50.0%
! GATGTTTTCACTTCCTCCCG+GGG + chr1_1:3480308-3480327 Msa0001760:CDS 50.0%
CAAAGCCTTAGCAGTTGGCT+TGG - chr1_1:3481236-3481255 None:intergenic 50.0%
CTAGCTTCTTTGGCAAGGTG+AGG - chr1_1:3481483-3481502 None:intergenic 50.0%
! GGTGGAGATCGTGGTGGTTT+TGG + chr1_1:3479693-3479712 Msa0001760:CDS 55.0%
!!! GATCGTGGTGGTTTTGGCAG+TGG + chr1_1:3479699-3479718 Msa0001760:CDS 55.0%
!!! AGTGGTTTTGGAGGTCGTGG+TGG + chr1_1:3479717-3479736 Msa0001760:CDS 55.0%
TGGGTTCCAGTGACCAAGCT+AGG + chr1_1:3479825-3479844 Msa0001760:CDS 55.0%
AGACGACCTAGCTTGGTCAC+TGG - chr1_1:3479834-3479853 None:intergenic 55.0%
CTTCACGAGACGACCTAGCT+TGG - chr1_1:3479841-3479860 None:intergenic 55.0%
CAAGCTAGGTCGTCTCGTGA+AGG + chr1_1:3479839-3479858 Msa0001760:CDS 55.0%
CTAGGTCGTCTCGTGAAGGA+AGG + chr1_1:3479843-3479862 Msa0001760:CDS 55.0%
! GCCGGTTCAGAAACAAACCC+GGG + chr1_1:3479977-3479996 Msa0001760:CDS 55.0%
!! GCCCGGGTTTGTTTCTGAAC+CGG - chr1_1:3479981-3480000 None:intergenic 55.0%
GTTCAGAAACAAACCCGGGC+TGG + chr1_1:3479981-3480000 Msa0001760:CDS 55.0%
TGGTCAGAGAACCCGGTTCA+AGG + chr1_1:3480001-3480020 Msa0001760:CDS 55.0%
CCCCAATAACCTCTCCTCAC+TGG - chr1_1:3480140-3480159 None:intergenic 55.0%
TCGTATGGTTCCTGCTCCTC+GGG + chr1_1:3480226-3480245 Msa0001760:CDS 55.0%
GCAACAATACCAGAACCCCG+AGG - chr1_1:3480245-3480264 None:intergenic 55.0%
!! AAGGGTTTTGGTGGATCCCC+GGG - chr1_1:3480327-3480346 None:intergenic 55.0%
!! CAAGGGTTTTGGTGGATCCC+CGG - chr1_1:3480328-3480347 None:intergenic 55.0%
GTTGGCCAAGCCAACTGCTA+AGG + chr1_1:3481228-3481247 Msa0001760:CDS 55.0%
CCTCCGCCCTTTCTTCTTCA+AGG - chr1_1:3481261-3481280 None:intergenic 55.0%
CCTTGAAGAAGAAAGGGCGG+AGG + chr1_1:3481258-3481277 Msa0001760:CDS 55.0%
! GGTGGAGATCGTGGTGGTTT+TGG + chr1_1:3479693-3479712 Msa0001760:CDS 55.0%
!!! GATCGTGGTGGTTTTGGCAG+TGG + chr1_1:3479699-3479718 Msa0001760:CDS 55.0%
!!! AGTGGTTTTGGAGGTCGTGG+TGG + chr1_1:3479717-3479736 Msa0001760:CDS 55.0%
TGGGTTCCAGTGACCAAGCT+AGG + chr1_1:3479825-3479844 Msa0001760:CDS 55.0%
AGACGACCTAGCTTGGTCAC+TGG - chr1_1:3479834-3479853 None:intergenic 55.0%
CTTCACGAGACGACCTAGCT+TGG - chr1_1:3479841-3479860 None:intergenic 55.0%
CAAGCTAGGTCGTCTCGTGA+AGG + chr1_1:3479839-3479858 Msa0001760:CDS 55.0%
CTAGGTCGTCTCGTGAAGGA+AGG + chr1_1:3479843-3479862 Msa0001760:CDS 55.0%
! GCCGGTTCAGAAACAAACCC+GGG + chr1_1:3479977-3479996 Msa0001760:CDS 55.0%
!! GCCCGGGTTTGTTTCTGAAC+CGG - chr1_1:3479981-3480000 None:intergenic 55.0%
GTTCAGAAACAAACCCGGGC+TGG + chr1_1:3479981-3480000 Msa0001760:CDS 55.0%
TGGTCAGAGAACCCGGTTCA+AGG + chr1_1:3480001-3480020 Msa0001760:CDS 55.0%
CCCCAATAACCTCTCCTCAC+TGG - chr1_1:3480140-3480159 None:intergenic 55.0%
TCGTATGGTTCCTGCTCCTC+GGG + chr1_1:3480226-3480245 Msa0001760:CDS 55.0%
GCAACAATACCAGAACCCCG+AGG - chr1_1:3480245-3480264 None:intergenic 55.0%
!! AAGGGTTTTGGTGGATCCCC+GGG - chr1_1:3480327-3480346 None:intergenic 55.0%
!! CAAGGGTTTTGGTGGATCCC+CGG - chr1_1:3480328-3480347 None:intergenic 55.0%
GTTGGCCAAGCCAACTGCTA+AGG + chr1_1:3481228-3481247 Msa0001760:CDS 55.0%
CCTCCGCCCTTTCTTCTTCA+AGG - chr1_1:3481261-3481280 None:intergenic 55.0%
CCTTGAAGAAGAAAGGGCGG+AGG + chr1_1:3481258-3481277 Msa0001760:CDS 55.0%
! GCTGAACGTGGTGGAGATCG+TGG + chr1_1:3479684-3479703 Msa0001760:CDS 60.0%
! GAACGTGGTGGAGATCGTGG+TGG + chr1_1:3479687-3479706 Msa0001760:CDS 60.0%
!!! GGCAGTGGTTTTGGAGGTCG+TGG + chr1_1:3479714-3479733 Msa0001760:CDS 60.0%
CTTGAGAGTGGGACCCACGA+GGG - chr1_1:3479937-3479956 None:intergenic 60.0%
GGGTCCCACTCTCAAGGATG+AGG + chr1_1:3479941-3479960 Msa0001760:CDS 60.0%
CGTATGGTTCCTGCTCCTCG+GGG + chr1_1:3480227-3480246 Msa0001760:CDS 60.0%
ATACCAGAACCCCGAGGAGC+AGG - chr1_1:3480239-3480258 None:intergenic 60.0%
CGGGGATCCACCAAAACCCT+TGG + chr1_1:3480326-3480345 Msa0001760:CDS 60.0%
! GCTGAACGTGGTGGAGATCG+TGG + chr1_1:3479684-3479703 Msa0001760:CDS 60.0%
! GAACGTGGTGGAGATCGTGG+TGG + chr1_1:3479687-3479706 Msa0001760:CDS 60.0%
!!! GGCAGTGGTTTTGGAGGTCG+TGG + chr1_1:3479714-3479733 Msa0001760:CDS 60.0%
CTTGAGAGTGGGACCCACGA+GGG - chr1_1:3479937-3479956 None:intergenic 60.0%
GGGTCCCACTCTCAAGGATG+AGG + chr1_1:3479941-3479960 Msa0001760:CDS 60.0%
CGTATGGTTCCTGCTCCTCG+GGG + chr1_1:3480227-3480246 Msa0001760:CDS 60.0%
ATACCAGAACCCCGAGGAGC+AGG - chr1_1:3480239-3480258 None:intergenic 60.0%
CGGGGATCCACCAAAACCCT+TGG + chr1_1:3480326-3480345 Msa0001760:CDS 60.0%
! GGAGGTCGTGGTGGTGACAG+AGG + chr1_1:3479726-3479745 Msa0001760:CDS 65.0%
! GGTCGTGGTGGTGACAGAGG+TGG + chr1_1:3479729-3479748 Msa0001760:CDS 65.0%
GGTGGTGACAGAGGTGGTCG+TGG + chr1_1:3479735-3479754 Msa0001760:CDS 65.0%
GGTGACAGAGGTGGTCGTGG+TGG + chr1_1:3479738-3479757 Msa0001760:CDS 65.0%
!! AGAGGTGGTCGTGGTGGACG+TGG + chr1_1:3479744-3479763 Msa0001760:CDS 65.0%
!! CGTGGTGGACGTGGTGACAG+AGG + chr1_1:3479753-3479772 Msa0001760:CDS 65.0%
GGACGTGGTGACAGAGGTCG+TGG + chr1_1:3479759-3479778 Msa0001760:CDS 65.0%
CGTGGTGACAGAGGTCGTGG+TGG + chr1_1:3479762-3479781 Msa0001760:CDS 65.0%
CGTGGTGGTCGTCGTAGAGC+TGG + chr1_1:3479777-3479796 Msa0001760:CDS 65.0%
GGTGGTCGTCGTAGAGCTGG+AGG + chr1_1:3479780-3479799 Msa0001760:CDS 65.0%
CCTTGAGAGTGGGACCCACG+AGG - chr1_1:3479938-3479957 None:intergenic 65.0%
CCTCGTGGGTCCCACTCTCA+AGG + chr1_1:3479935-3479954 Msa0001760:CDS 65.0%
ACCGGGTTCTCTGACCAGCC+CGG - chr1_1:3479998-3480017 None:intergenic 65.0%
GTTCCTGCTCCTCGGGGTTC+TGG + chr1_1:3480233-3480252 Msa0001760:CDS 65.0%
!! GGTTTTGGTGGATCCCCGGG+AGG - chr1_1:3480324-3480343 None:intergenic 65.0%
! GGAGGTCGTGGTGGTGACAG+AGG + chr1_1:3479726-3479745 Msa0001760:CDS 65.0%
! GGTCGTGGTGGTGACAGAGG+TGG + chr1_1:3479729-3479748 Msa0001760:CDS 65.0%
GGTGGTGACAGAGGTGGTCG+TGG + chr1_1:3479735-3479754 Msa0001760:CDS 65.0%
GGTGACAGAGGTGGTCGTGG+TGG + chr1_1:3479738-3479757 Msa0001760:CDS 65.0%
!! AGAGGTGGTCGTGGTGGACG+TGG + chr1_1:3479744-3479763 Msa0001760:CDS 65.0%
!! CGTGGTGGACGTGGTGACAG+AGG + chr1_1:3479753-3479772 Msa0001760:CDS 65.0%
GGACGTGGTGACAGAGGTCG+TGG + chr1_1:3479759-3479778 Msa0001760:CDS 65.0%
CGTGGTGACAGAGGTCGTGG+TGG + chr1_1:3479762-3479781 Msa0001760:CDS 65.0%
CGTGGTGGTCGTCGTAGAGC+TGG + chr1_1:3479777-3479796 Msa0001760:CDS 65.0%
GGTGGTCGTCGTAGAGCTGG+AGG + chr1_1:3479780-3479799 Msa0001760:CDS 65.0%
CCTTGAGAGTGGGACCCACG+AGG - chr1_1:3479938-3479957 None:intergenic 65.0%
CCTCGTGGGTCCCACTCTCA+AGG + chr1_1:3479935-3479954 Msa0001760:CDS 65.0%
ACCGGGTTCTCTGACCAGCC+CGG - chr1_1:3479998-3480017 None:intergenic 65.0%
GTTCCTGCTCCTCGGGGTTC+TGG + chr1_1:3480233-3480252 Msa0001760:CDS 65.0%
!! GGTTTTGGTGGATCCCCGGG+AGG - chr1_1:3480324-3480343 None:intergenic 65.0%
CCGGGTTCTCTGACCAGCCC+GGG - chr1_1:3479997-3480016 None:intergenic 70.0%
!! CCCGGGCTGGTCAGAGAACC+CGG + chr1_1:3479994-3480013 Msa0001760:CDS 70.0%
CCGGGTTCTCTGACCAGCCC+GGG - chr1_1:3479997-3480016 None:intergenic 70.0%
!! CCCGGGCTGGTCAGAGAACC+CGG + chr1_1:3479994-3480013 Msa0001760:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 3479605 3481723 3479605 ID=Msa0001760;Name=Msa0001760
chr1_1 mRNA 3479605 3481723 3479605 ID=Msa0001760-mRNA-1;Parent=Msa0001760;Name=Msa0001760-mRNA-1;_AED=0.00;_eAED=0.00;_QI=76|1|1|1|1|1|2|438|279
chr1_1 exon 3479605 3480361 3479605 ID=Msa0001760-mRNA-1:exon:932;Parent=Msa0001760-mRNA-1
chr1_1 exon 3481127 3481723 3481127 ID=Msa0001760-mRNA-1:exon:933;Parent=Msa0001760-mRNA-1
chr1_1 five_prime_UTR 3479605 3479680 3479605 ID=Msa0001760-mRNA-1:five_prime_utr;Parent=Msa0001760-mRNA-1
chr1_1 CDS 3479681 3480361 3479681 ID=Msa0001760-mRNA-1:cds;Parent=Msa0001760-mRNA-1
chr1_1 CDS 3481127 3481285 3481127 ID=Msa0001760-mRNA-1:cds;Parent=Msa0001760-mRNA-1
chr1_1 three_prime_UTR 3481286 3481723 3481286 ID=Msa0001760-mRNA-1:three_prime_utr;Parent=Msa0001760-mRNA-1
Gene Sequence

>Msa0001760

ATGGCTGAACGTGGTGGAGATCGTGGTGGTTTTGGCAGTGGTTTTGGAGGTCGTGGTGGTGACAGAGGTGGTCGTGGTGGACGTGGTGACAGAGGTCGTGGTGGTCGTCGTAGAGCTGGAGGAAGACGCGAAGAAGAAGAGAAATGGGTTCCAGTGACCAAGCTAGGTCGTCTCGTGAAGGAAGGTAAGATCCGAAGCCTTGAACAGATCTATCTTCATTCTCTCCCAATCAAGGAGCATCAAATCATCGATACCCTCGTGGGTCCCACTCTCAAGGATGAGGTGATGAAGATCATGCCGGTTCAGAAACAAACCCGGGCTGGTCAGAGAACCCGGTTCAAGGCTTTTGTTGTGGTTGGTGATAACAATGGTCACGTTGGTCTTGGTGTCAAGTGTAGCAAAGAAGTAGCTACTGCGATTCGTGGTGCTATTATCCTGGCTAAGCTGAGTGTGATTCCAGTGAGGAGAGGTTATTGGGGTAACAAGATCGGAAAGCCACACACTGTTCCTTGTAAGGTTACTGGAAAGTGTGGTTCTGTTACTGTTCGTATGGTTCCTGCTCCTCGGGGTTCTGGTATTGTTGCTGCTAGGGTTCCTAAGAAGGTTTTGCAGTTTGCTGGTATTGATGATGTTTTCACTTCCTCCCGGGGATCCACCAAAACCCTTGGAAATTTCGTCAAGGCCACTTTTGACTGTTTGATGAAAACCTACGGTTTTCTAACACCTGAATTCTGGAAGGAGACAAGGTTCTCCAAATCTCCATTCCAAGAGTATACTGATCTGTTGGCCAAGCCAACTGCTAAGGCTTTGATCCTTGAAGAAGAAAGGGCGGAGGCTTGA
Protein sequence

>Msa0001760

MAERGGDRGGFGSGFGGRGGDRGGRGGRGDRGRGGRRRAGGRREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPEFWKETRFSKSPFQEYTDLLAKPTAKALILEEERAEA*