Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0940830 | XP_013451233.1 | 95.739 | 352 | 15 | 0 | 1 | 352 | 1 | 352 | 0.0 | 689 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004540 | Msa0940830 | 0.816781 | 4.632201e-52 | -8.615850e-47 |
| Msa0006880 | Msa0940830 | 0.810153 | 1.328132e-50 | -8.615850e-47 |
| Msa0027580 | Msa0940830 | 0.807357 | 5.258205e-50 | -8.615850e-47 |
| Msa0032320 | Msa0940830 | 0.803816 | 2.909656e-49 | -8.615850e-47 |
| Msa0055100 | Msa0940830 | 0.816886 | 4.388492e-52 | -8.615850e-47 |
| Msa0061970 | Msa0940830 | 0.806234 | 9.079819e-50 | -8.615850e-47 |
| Msa0067890 | Msa0940830 | 0.801366 | 9.313268e-49 | -8.615850e-47 |
| Msa0070430 | Msa0940830 | 0.801474 | 8.853051e-49 | -8.615850e-47 |
| Msa0072170 | Msa0940830 | 0.804084 | 2.560101e-49 | -8.615850e-47 |
| Msa0073670 | Msa0940830 | 0.823343 | 1.457607e-53 | -8.615850e-47 |
| Msa0075340 | Msa0940830 | 0.807789 | 4.258514e-50 | -8.615850e-47 |
| Msa0090030 | Msa0940830 | 0.808452 | 3.075773e-50 | -8.615850e-47 |
| Msa0094010 | Msa0940830 | 0.818676 | 1.731141e-52 | -8.615850e-47 |
| Msa0097950 | Msa0940830 | 0.809128 | 2.204932e-50 | -8.615850e-47 |
| Msa0101180 | Msa0940830 | 0.807898 | 4.035753e-50 | -8.615850e-47 |
| Msa0111330 | Msa0940830 | 0.807532 | 4.827600e-50 | -8.615850e-47 |
| Msa0115370 | Msa0940830 | 0.805893 | 1.071537e-49 | -8.615850e-47 |
| Msa0120540 | Msa0940830 | 0.812764 | 3.598354e-51 | -8.615850e-47 |
| Msa0606810 | Msa0940830 | 0.833673 | 4.660058e-56 | -8.615850e-47 |
| Msa0607510 | Msa0940830 | 0.820837 | 5.554746e-53 | -8.615850e-47 |
| Msa0619180 | Msa0940830 | 0.808775 | 2.624116e-50 | -8.615850e-47 |
| Msa0625790 | Msa0940830 | 0.818222 | 2.194037e-52 | -8.615850e-47 |
| Msa0626680 | Msa0940830 | 0.808615 | 2.838934e-50 | -8.615850e-47 |
| Msa0628290 | Msa0940830 | 0.806319 | 8.714012e-50 | -8.615850e-47 |
| Msa0645170 | Msa0940830 | 0.806212 | 9.179278e-50 | -8.615850e-47 |
| Msa0664760 | Msa0940830 | 0.804340 | 2.264594e-49 | -8.615850e-47 |
| Msa0664960 | Msa0940830 | 0.811709 | 6.112762e-51 | -8.615850e-47 |
| Msa0687230 | Msa0940830 | 0.801075 | 1.068275e-48 | -8.615850e-47 |
| Msa0704800 | Msa0940830 | 0.838932 | 2.143444e-57 | -8.615850e-47 |
| Msa0724760 | Msa0940830 | 0.817699 | 2.879253e-52 | -8.615850e-47 |
| Msa0735310 | Msa0940830 | 0.837378 | 5.385211e-57 | -8.615850e-47 |
| Msa0744090 | Msa0940830 | 0.803043 | 4.208075e-49 | -8.615850e-47 |
| Msa0795660 | Msa0940830 | 0.805534 | 1.274556e-49 | -8.615850e-47 |
| Msa0822170 | Msa0940830 | 0.804798 | 1.817337e-49 | -8.615850e-47 |
| Msa0824640 | Msa0940830 | 0.812416 | 4.287475e-51 | -8.615850e-47 |
| Msa0126770 | Msa0940830 | 0.804308 | 2.298903e-49 | -8.615850e-47 |
| Msa0130240 | Msa0940830 | 0.800577 | 1.350496e-48 | -8.615850e-47 |
| Msa0145150 | Msa0940830 | 0.802444 | 5.594511e-49 | -8.615850e-47 |
| Msa0152840 | Msa0940830 | 0.805237 | 1.471051e-49 | -8.615850e-47 |
| Msa0164220 | Msa0940830 | 0.804846 | 1.775391e-49 | -8.615850e-47 |
| Msa0164370 | Msa0940830 | 0.805457 | 1.322536e-49 | -8.615850e-47 |
| Msa0165440 | Msa0940830 | 0.809393 | 1.934643e-50 | -8.615850e-47 |
| Msa0166750 | Msa0940830 | 0.812079 | 5.078623e-51 | -8.615850e-47 |
| Msa0173170 | Msa0940830 | 0.802025 | 6.822680e-49 | -8.615850e-47 |
| Msa0177270 | Msa0940830 | 0.802644 | 5.086391e-49 | -8.615850e-47 |
| Msa0182280 | Msa0940830 | 0.803122 | 4.053745e-49 | -8.615850e-47 |
| Msa0198520 | Msa0940830 | 0.820792 | 5.688774e-53 | -8.615850e-47 |
| Msa0198530 | Msa0940830 | 0.801036 | 1.088125e-48 | -8.615850e-47 |
| Msa0211650 | Msa0940830 | 0.802480 | 5.498848e-49 | -8.615850e-47 |
| Msa0212750 | Msa0940830 | -0.836427 | 9.419554e-57 | -8.615850e-47 |
| Msa0219250 | Msa0940830 | -0.817102 | 3.925249e-52 | -8.615850e-47 |
| Msa0221600 | Msa0940830 | 0.800341 | 1.508333e-48 | -8.615850e-47 |
| Msa0226460 | Msa0940830 | 0.803666 | 3.126486e-49 | -8.615850e-47 |
| Msa0227310 | Msa0940830 | -0.803839 | 2.878750e-49 | -8.615850e-47 |
| Msa0229940 | Msa0940830 | 0.800269 | 1.559929e-48 | -8.615850e-47 |
| Msa0394400 | Msa0940830 | 0.826135 | 3.202642e-54 | -8.615850e-47 |
| Msa0403190 | Msa0940830 | 0.825633 | 4.215139e-54 | -8.615850e-47 |
| Msa0413450 | Msa0940830 | 0.815827 | 7.572826e-52 | -8.615850e-47 |
| Msa0414020 | Msa0940830 | 0.813131 | 2.989782e-51 | -8.615850e-47 |
| Msa0431770 | Msa0940830 | 0.852366 | 4.839542e-61 | -8.615850e-47 |
| Msa0436200 | Msa0940830 | 0.811119 | 8.211762e-51 | -8.615850e-47 |
| Msa0449820 | Msa0940830 | 0.809040 | 2.303069e-50 | -8.615850e-47 |
| Msa0458640 | Msa0940830 | 0.800029 | 1.745214e-48 | -8.615850e-47 |
| Msa0461590 | Msa0940830 | 0.803160 | 3.980785e-49 | -8.615850e-47 |
| Msa0478580 | Msa0940830 | 0.814522 | 1.475875e-51 | -8.615850e-47 |
| Msa0239940 | Msa0940830 | 0.807538 | 4.814749e-50 | -8.615850e-47 |
| Msa0258880 | Msa0940830 | -0.814600 | 1.418399e-51 | -8.615850e-47 |
| Msa0267870 | Msa0940830 | 0.809830 | 1.558946e-50 | -8.615850e-47 |
| Msa0285060 | Msa0940830 | 0.804951 | 1.688038e-49 | -8.615850e-47 |
| Msa0291520 | Msa0940830 | 0.812912 | 3.338133e-51 | -8.615850e-47 |
| Msa0295000 | Msa0940830 | -0.807081 | 6.016709e-50 | -8.615850e-47 |
| Msa0308220 | Msa0940830 | 0.814740 | 1.320661e-51 | -8.615850e-47 |
| Msa0337510 | Msa0940830 | 0.824555 | 7.574580e-54 | -8.615850e-47 |
| Msa0484290 | Msa0940830 | 0.800142 | 1.655863e-48 | -8.615850e-47 |
| Msa0505150 | Msa0940830 | 0.816223 | 6.176047e-52 | -8.615850e-47 |
| Msa0506940 | Msa0940830 | 0.833233 | 5.999554e-56 | -8.615850e-47 |
| Msa0513440 | Msa0940830 | 0.811163 | 8.032753e-51 | -8.615850e-47 |
| Msa0524590 | Msa0940830 | 0.800023 | 1.750373e-48 | -8.615850e-47 |
| Msa0527910 | Msa0940830 | 0.807627 | 4.608510e-50 | -8.615850e-47 |
| Msa0539050 | Msa0940830 | 0.802313 | 5.953599e-49 | -8.615850e-47 |
| Msa0539060 | Msa0940830 | 0.808804 | 2.587234e-50 | -8.615850e-47 |
| Msa0550570 | Msa0940830 | 0.800924 | 1.147008e-48 | -8.615850e-47 |
| Msa0578090 | Msa0940830 | 0.816055 | 6.734597e-52 | -8.615850e-47 |
| Msa0584550 | Msa0940830 | 0.808028 | 3.786433e-50 | -8.615850e-47 |
| Msa0586850 | Msa0940830 | 0.811856 | 5.677424e-51 | -8.615850e-47 |
| Msa0864010 | Msa0940830 | 0.807642 | 4.575681e-50 | -8.615850e-47 |
| Msa0869010 | Msa0940830 | 0.821009 | 5.070661e-53 | -8.615850e-47 |
| Msa0879860 | Msa0940830 | 0.806472 | 8.092695e-50 | -8.615850e-47 |
| Msa0888940 | Msa0940830 | 0.802420 | 5.658489e-49 | -8.615850e-47 |
| Msa0924150 | Msa0940830 | -0.801142 | 1.035170e-48 | -8.615850e-47 |
| Msa0940830 | Msa0959840 | 0.803183 | 3.936829e-49 | -8.615850e-47 |
| Msa0940830 | Msa0963020 | 0.803359 | 3.620476e-49 | -8.615850e-47 |
| Msa0940830 | Msa0976330 | 0.801918 | 7.178345e-49 | -8.615850e-47 |
| Msa0940830 | Msa0977310 | 0.826963 | 2.033171e-54 | -8.615850e-47 |
| Msa0940830 | Msa1002600 | -0.800820 | 1.204319e-48 | -8.615850e-47 |
| Msa0940830 | Msa1003440 | 0.812553 | 4.001226e-51 | -8.615850e-47 |
| Msa0940830 | Msa1004420 | 0.825682 | 4.104170e-54 | -8.615850e-47 |
| Msa0940830 | Msa1010720 | 0.820322 | 7.291301e-53 | -8.615850e-47 |
| Msa0940830 | Msa1023170 | -0.810213 | 1.288972e-50 | -8.615850e-47 |
| Msa0940830 | Msa1028290 | 0.802552 | 5.313753e-49 | -8.615850e-47 |
| Msa0940830 | Msa1030930 | 0.833402 | 5.443884e-56 | -8.615850e-47 |
| Msa0940830 | Msa1033520 | 0.812780 | 3.568730e-51 | -8.615850e-47 |
| Msa0940830 | Msa1070050 | 0.819578 | 1.078829e-52 | -8.615850e-47 |
| Msa0940830 | Msa1073400 | 0.804574 | 2.023211e-49 | -8.615850e-47 |
| Msa0940830 | Msa1083880 | 0.812449 | 4.215824e-51 | -8.615850e-47 |
| Msa0940830 | Msa1093330 | 0.801639 | 8.187610e-49 | -8.615850e-47 |
| Msa0940830 | Msa1113590 | 0.803802 | 2.929116e-49 | -8.615850e-47 |
| Msa0940830 | Msa1160360 | 0.805581 | 1.245783e-49 | -8.615850e-47 |
| Msa0940830 | Msa1173900 | 0.810035 | 1.408306e-50 | -8.615850e-47 |
| Msa0940830 | Msa1183660 | 0.804992 | 1.655148e-49 | -8.615850e-47 |
| Msa0940830 | Msa1186800 | 0.807827 | 4.179027e-50 | -8.615850e-47 |
| Msa0940830 | Msa1192850 | 0.802284 | 6.034271e-49 | -8.615850e-47 |
| Msa0940830 | Msa1198880 | 0.814356 | 1.605949e-51 | -8.615850e-47 |
| Msa0940830 | Msa1199290 | 0.829738 | 4.352594e-55 | -8.615850e-47 |
| Msa0940830 | Msa1201830 | 0.824507 | 7.775894e-54 | -8.615850e-47 |
| Msa0940830 | Msa1207730 | 0.801785 | 7.643055e-49 | -8.615850e-47 |
| Msa0940830 | Msa1211830 | 0.805056 | 1.604655e-49 | -8.615850e-47 |
| Msa0940830 | Msa1213770 | 0.809902 | 1.503873e-50 | -8.615850e-47 |
| Msa0940830 | Msa1223330 | 0.802043 | 6.765884e-49 | -8.615850e-47 |
| Msa0940830 | Msa1227690 | 0.819034 | 1.435301e-52 | -8.615850e-47 |
| Msa0940830 | Msa1246530 | -0.807363 | 5.242039e-50 | -8.615850e-47 |
| Msa0940830 | Msa1253810 | 0.859579 | 3.752643e-63 | -8.615850e-47 |
| Msa0940830 | Msa1279590 | 0.808454 | 3.072801e-50 | -8.615850e-47 |
| Msa0940830 | Msa1294840 | 0.814522 | 1.476005e-51 | -8.615850e-47 |
| Msa0940830 | Msa1296300 | 0.800660 | 1.298528e-48 | -8.615850e-47 |
| Msa0940830 | Msa1299700 | 0.800011 | 1.760735e-48 | -8.615850e-47 |
| Msa0940830 | Msa1303580 | 0.801213 | 1.001292e-48 | -8.615850e-47 |
| Msa0940830 | Msa1306990 | 0.804110 | 2.527822e-49 | -8.615850e-47 |
| Msa0940830 | Msa1310690 | 0.801237 | 9.900481e-49 | -8.615850e-47 |
| Msa0940830 | Msa1323990 | 0.817625 | 2.992330e-52 | -8.615850e-47 |
| Msa0940830 | Msa1325930 | 0.820383 | 7.060055e-53 | -8.615850e-47 |
| Msa0940830 | Msa1327490 | 0.805062 | 1.600236e-49 | -8.615850e-47 |
| Msa0940830 | Msa1329450 | 0.811450 | 6.960028e-51 | -8.615850e-47 |
| Msa0940830 | Msa1345450 | 0.828284 | 9.794509e-55 | -8.615850e-47 |
| Msa0940830 | Msa1363700 | 0.815395 | 9.450676e-52 | -8.615850e-47 |
| Msa0940830 | Msa1366650 | 0.802753 | 4.830845e-49 | -8.615850e-47 |
| Msa0940830 | Msa1380970 | 0.805417 | 1.348432e-49 | -8.615850e-47 |
| Msa0940830 | Msa1390230 | 0.803613 | 3.206826e-49 | -8.615850e-47 |
| Msa0940830 | Msa1393800 | 0.813594 | 2.365610e-51 | -8.615850e-47 |
| Msa0940830 | Msa1397940 | 0.813545 | 2.425014e-51 | -8.615850e-47 |
| Msa0940830 | Msa1398860 | 0.807370 | 5.225923e-50 | -8.615850e-47 |
| Msa0940830 | Msa1423910 | 0.800612 | 1.328031e-48 | -8.615850e-47 |
| Msa0940830 | Msa1438640 | 0.808875 | 2.498209e-50 | -8.615850e-47 |
| Msa0940830 | Msa1445940 | 0.832211 | 1.075697e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0940830 | MtrunA17_Chr6g0456671 | 95.739 | 352 | 15 | 0 | 1 | 352 | 1 | 352 | 0.0 | 689 |
| Msa0940830 | MtrunA17_Chr3g0111211 | 84.211 | 95 | 14 | 1 | 1 | 95 | 1 | 94 | 5.02e-49 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0940830 | AT5G15880.1 | 59.773 | 353 | 136 | 4 | 1 | 352 | 1 | 348 | 1.21e-137 | 395 |
Find 66 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCCAGCTCCATCTCTTT+CGG | 0.219554 | 6_3:-13666835 | None:intergenic |
| TTTCCAGCTCCATCTCTTTC+GGG | 0.219643 | 6_3:-13666834 | None:intergenic |
| TAAACATAATTGTATTTATC+AGG | 0.247394 | 6_3:+13667067 | Msa0940830:CDS |
| TTTCATGGTCGACACCAAAA+TGG | 0.291236 | 6_3:+13662166 | Msa0940830:five_prime_UTR |
| TCAGCGTCTCTTCTCTAAGC+TGG | 0.349364 | 6_3:-13663334 | None:intergenic |
| TAAAAGCACTGGAGAAGAAA+TGG | 0.355246 | 6_3:+13665838 | Msa0940830:CDS |
| TGAGAATCGGAGAAGAGAAT+TGG | 0.356390 | 6_3:-13662358 | None:intergenic |
| ATCTTTGATATCTGAGGGTT+GGG | 0.368721 | 6_3:+13663713 | Msa0940830:CDS |
| TATCAGGAGGAGGCAATCTA+AGG | 0.405208 | 6_3:-13662447 | None:intergenic |
| ACGTTGGAGAGAGTTAGTTT+TGG | 0.431307 | 6_3:-13662407 | None:intergenic |
| TGTCAGAGGCTCCTCTGATA+AGG | 0.431656 | 6_3:+13666924 | Msa0940830:CDS |
| TTCCGTACATACCTGATGTC+TGG | 0.446380 | 6_3:-13662554 | None:intergenic |
| GGAAGACGCTGAGAGATATC+AGG | 0.451663 | 6_3:-13662463 | None:intergenic |
| GCATGGGCAGCAGATGTAGT+AGG | 0.458104 | 6_3:+13662292 | Msa0940830:CDS |
| TCAGCAACTAGCAGTTAAAC+AGG | 0.459491 | 6_3:+13666582 | Msa0940830:CDS |
| CCTCAGTCTCACCTCTAACT+TGG | 0.461239 | 6_3:-13663444 | None:intergenic |
| AAAGAAGCTGAGGGCTGAGC+TGG | 0.462884 | 6_3:+13663653 | Msa0940830:CDS |
| TAAAATCCGAAAATAAGTTA+AGG | 0.466847 | 6_3:+13662119 | Msa0940830:five_prime_UTR |
| ATTACTACGGACCAAGTTAG+AGG | 0.481715 | 6_3:+13663433 | Msa0940830:CDS |
| CAGCGTCTCTTCTCTAAGCT+GGG | 0.487301 | 6_3:-13663333 | None:intergenic |
| CTCAGATATCAAAGATTGGC+TGG | 0.488761 | 6_3:-13663706 | None:intergenic |
| TCATTCCTCAACCAGACATC+AGG | 0.500545 | 6_3:+13662543 | Msa0940830:CDS |
| AGGCTTCCTTACCATTCTGC+AGG | 0.500613 | 6_3:+13666979 | Msa0940830:CDS |
| AACCCTCAGATATCAAAGAT+TGG | 0.510374 | 6_3:-13663710 | None:intergenic |
| AATCTTTGATATCTGAGGGT+TGG | 0.510746 | 6_3:+13663712 | Msa0940830:CDS |
| CATAGTTTGTCAGATTATGA+TGG | 0.513133 | 6_3:+13666949 | Msa0940830:CDS |
| GCAGATGTAGTAGGAGGAAA+CGG | 0.513861 | 6_3:+13662301 | Msa0940830:CDS |
| GGATGAGAAGAAGAAAGAGC+TGG | 0.515451 | 6_3:+13663815 | Msa0940830:CDS |
| AAAAGCACTGGAGAAGAAAT+GGG | 0.518715 | 6_3:+13665839 | Msa0940830:CDS |
| AACAAGATAAATAATAGAGC+TGG | 0.523615 | 6_3:+13663744 | Msa0940830:CDS |
| GGAGGATACTGTAAAAGCAC+TGG | 0.527069 | 6_3:+13665827 | Msa0940830:CDS |
| CAGCCAATCTTTGATATCTG+AGG | 0.529090 | 6_3:+13663707 | Msa0940830:CDS |
| CAATGGCAGGATTATTAGCA+TGG | 0.542701 | 6_3:+13662275 | Msa0940830:exon |
| AGCAGAGGCTTATGCTACTT+AGG | 0.546956 | 6_3:+13667016 | Msa0940830:CDS |
| AGCCAATCTTTGATATCTGA+GGG | 0.547345 | 6_3:+13663708 | Msa0940830:CDS |
| TTTCAGTTCTGCCTGCAGAA+TGG | 0.552569 | 6_3:-13666990 | None:intergenic |
| TGCTTTCAGACACAAGCTGA+GGG | 0.558817 | 6_3:+13666793 | Msa0940830:intron |
| CGCTGAGAGATATCAGGAGG+AGG | 0.560401 | 6_3:-13662457 | None:intergenic |
| AGAAATTCACCCGAAAGAGA+TGG | 0.568684 | 6_3:+13666825 | Msa0940830:CDS |
| GCACTAAAACAGCCTTCCCC+AGG | 0.572318 | 6_3:+13665879 | Msa0940830:CDS |
| TTGCTTTCAGACACAAGCTG+AGG | 0.579548 | 6_3:+13666792 | Msa0940830:intron |
| TCACCCGAAAGAGATGGAGC+TGG | 0.584182 | 6_3:+13666831 | Msa0940830:CDS |
| CAATTGCGAGAATAAAATCA+AGG | 0.585165 | 6_3:+13663391 | Msa0940830:CDS |
| ACATACCTGATGTCTGGTTG+AGG | 0.586081 | 6_3:-13662548 | None:intergenic |
| GAGGCTTATGCTACTTAGGT+CGG | 0.588156 | 6_3:+13667020 | Msa0940830:CDS |
| ATAAGTTAAGGAGCAAAGCA+TGG | 0.588923 | 6_3:+13662131 | Msa0940830:five_prime_UTR |
| AGAGAATGAGCATGAAGATG+AGG | 0.593261 | 6_3:-13662484 | None:intergenic |
| AGTTGATAGAAACATATGAC+TGG | 0.594383 | 6_3:+13667157 | Msa0940830:three_prime_UTR |
| ATGAAACTGAAAAGAAGCTG+AGG | 0.600148 | 6_3:+13663643 | Msa0940830:CDS |
| TTTGATATCTGAGGGTTGGG+AGG | 0.607138 | 6_3:+13663716 | Msa0940830:CDS |
| TGGAGGAGGCTGAATTACTA+CGG | 0.607541 | 6_3:+13663420 | Msa0940830:CDS |
| GCTTAGAGAAGAGACGCTGA+AGG | 0.611996 | 6_3:+13663337 | Msa0940830:CDS |
| TAAGATATAATACCTGGGGA+AGG | 0.628822 | 6_3:-13665891 | None:intergenic |
| TGGGCAGCAGATGTAGTAGG+AGG | 0.629568 | 6_3:+13662295 | Msa0940830:CDS |
| CAGATTATGATGGTCATCAG+AGG | 0.630892 | 6_3:+13666959 | Msa0940830:CDS |
| AATGGCAGGATTATTAGCAT+GGG | 0.635893 | 6_3:+13662276 | Msa0940830:exon |
| GTTCTGCCTGCAGAATGGTA+AGG | 0.637018 | 6_3:-13666985 | None:intergenic |
| CAAACTATGTACCTTATCAG+AGG | 0.643606 | 6_3:-13666935 | None:intergenic |
| GGAATCGAGTTCGCGAACGT+AGG | 0.646521 | 6_3:-13662386 | None:intergenic |
| GCAGAACTGAAAGTCAGCAG+AGG | 0.653838 | 6_3:+13667001 | Msa0940830:CDS |
| AGACGCTGAGAGATATCAGG+AGG | 0.660369 | 6_3:-13662460 | None:intergenic |
| TATTCAATAAGTACAAACAA+AGG | 0.665123 | 6_3:-13667181 | None:intergenic |
| TGAAACTGAAAAGAAGCTGA+GGG | 0.667309 | 6_3:+13663644 | Msa0940830:CDS |
| GTAGATCTTGAATCGAACGT+TGG | 0.696066 | 6_3:-13662423 | None:intergenic |
| TGGAAAGATTGAATGCACAA+TGG | 0.702297 | 6_3:+13666851 | Msa0940830:CDS |
| GATGTAGTAGGAGGAAACGG+AGG | 0.714297 | 6_3:+13662304 | Msa0940830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTGAAATTTATAAGTT+CGG | + | chr6_3:13662820-13662839 | Msa0940830:intron | 10.0% |
| !! | TGTTAAAATATTATACTTAA+TGG | + | chr6_3:13665568-13665587 | Msa0940830:intron | 10.0% |
| !! | AAAAGAAAGAAAAAAAACAA+TGG | + | chr6_3:13662258-13662277 | Msa0940830:exon | 15.0% |
| !!! | TTTTTTTTCTCTTTTCTTTT+TGG | + | chr6_3:13662748-13662767 | Msa0940830:intron | 15.0% |
| !! | ATTGTAGAACTTATTAAAAT+TGG | + | chr6_3:13664160-13664179 | Msa0940830:intron | 15.0% |
| !! | CATTTAGCAATTATTAATTA+TGG | - | chr6_3:13664340-13664359 | None:intergenic | 15.0% |
| !! | ATAGTTATACATTCATATAA+TGG | + | chr6_3:13665004-13665023 | Msa0940830:intron | 15.0% |
| !!! | AACTAAATTGATAATTCAAT+AGG | + | chr6_3:13665252-13665271 | Msa0940830:intron | 15.0% |
| !!! | GTATTTAATTTGCATTTAAA+AGG | - | chr6_3:13665538-13665557 | None:intergenic | 15.0% |
| !!! | TTAATAAACATTTAAAGTGA+CGG | + | chr6_3:13665591-13665610 | Msa0940830:intron | 15.0% |
| !!! | TAGGATGTATTTTTTTTTTT+TGG | + | chr6_3:13666291-13666310 | Msa0940830:intron | 15.0% |
| !! | AAATGAATTATTCTATCAAA+AGG | + | chr6_3:13666357-13666376 | Msa0940830:intron | 15.0% |
| !! | TAAACATAATTGTATTTATC+AGG | + | chr6_3:13667067-13667086 | Msa0940830:CDS | 15.0% |
| !!! | CTTATTTTCGGATTTTATTT+TGG | - | chr6_3:13662116-13662135 | None:intergenic | 20.0% |
| !! | TAAAATCCGAAAATAAGTTA+AGG | + | chr6_3:13662119-13662138 | Msa0940830:five_prime_UTR | 20.0% |
| !!! | TTTTTTCTTCACTTCAATTT+TGG | - | chr6_3:13662194-13662213 | None:intergenic | 20.0% |
| !!! | ATAATAAGTAATTTGATTCG+TGG | + | chr6_3:13662630-13662649 | Msa0940830:intron | 20.0% |
| !!! | CTTTTTGGTACATTTTAAAT+TGG | + | chr6_3:13662763-13662782 | Msa0940830:intron | 20.0% |
| !! | GCATATACAAAAACAATTTA+AGG | - | chr6_3:13663008-13663027 | None:intergenic | 20.0% |
| !!! | GTTGTTTTTATAAGCTATAT+TGG | + | chr6_3:13663033-13663052 | Msa0940830:intron | 20.0% |
| !!! | GATTTAATTGAAGATTTGTT+TGG | + | chr6_3:13663262-13663281 | Msa0940830:intron | 20.0% |
| !! | GAATAAAATCAAGGAAAAAA+TGG | + | chr6_3:13663400-13663419 | Msa0940830:CDS | 20.0% |
| !! | AGCAATTATTAATTATGGAT+TGG | - | chr6_3:13664335-13664354 | None:intergenic | 20.0% |
| !! | AAATAGATAGAGAAAATAGA+GGG | + | chr6_3:13664636-13664655 | Msa0940830:intron | 20.0% |
| !!! | TATACATTCATATAATGGAA+AGG | + | chr6_3:13665009-13665028 | Msa0940830:intron | 20.0% |
| !!! | ATACATTCATATAATGGAAA+GGG | + | chr6_3:13665010-13665029 | Msa0940830:intron | 20.0% |
| !!! | TGTTCATTTCTTTTAAGAAA+TGG | - | chr6_3:13665083-13665102 | None:intergenic | 20.0% |
| !! | TTCATTCAAAACTATAGTTA+TGG | + | chr6_3:13665181-13665200 | Msa0940830:intron | 20.0% |
| !! | TGAATTATCAATTTAGTTGA+AGG | - | chr6_3:13665250-13665269 | None:intergenic | 20.0% |
| !! | TTAAATTATTGTTTCAGTTC+TGG | - | chr6_3:13665750-13665769 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTGGAATATTTCT+AGG | + | chr6_3:13666237-13666256 | Msa0940830:intron | 20.0% |
| !!! | TTTTTTTTTTTCCTTCATGA+TGG | + | chr6_3:13666316-13666335 | Msa0940830:intron | 20.0% |
| !! | TATTCAATAAGTACAAACAA+AGG | - | chr6_3:13667184-13667203 | None:intergenic | 20.0% |
| !!! | TTTGCTCCTTAACTTATTTT+CGG | - | chr6_3:13662128-13662147 | None:intergenic | 25.0% |
| !!! | TGGATTAAGCTTTTTTTTCA+TGG | + | chr6_3:13662151-13662170 | Msa0940830:five_prime_UTR | 25.0% |
| !! | TTGTCGAGTTTTTATTGAAT+GGG | + | chr6_3:13662605-13662624 | Msa0940830:intron | 25.0% |
| ! | TACAAGACATAGTTACATTT+AGG | + | chr6_3:13662889-13662908 | Msa0940830:intron | 25.0% |
| !!! | CTTGCATAAGCTATTTTTAT+AGG | + | chr6_3:13662968-13662987 | Msa0940830:intron | 25.0% |
| !!! | AATTTTGGTATGAAACTGTT+TGG | + | chr6_3:13663148-13663167 | Msa0940830:intron | 25.0% |
| !! | GTCGAAGATTTTCAATTTTA+GGG | + | chr6_3:13663184-13663203 | Msa0940830:intron | 25.0% |
| ! | AAACTAACAAAATCACGAAA+CGG | - | chr6_3:13663211-13663230 | None:intergenic | 25.0% |
| ! | TGAAATTGTAGTAGACAATT+TGG | - | chr6_3:13663240-13663259 | None:intergenic | 25.0% |
| ! | AAATTGTCTACTACAATTTC+AGG | + | chr6_3:13663239-13663258 | Msa0940830:intron | 25.0% |
| ! | AATTGTCTACTACAATTTCA+GGG | + | chr6_3:13663240-13663259 | Msa0940830:intron | 25.0% |
| ! | ATTGTTATATGAGACTGATT+TGG | + | chr6_3:13663290-13663309 | Msa0940830:intron | 25.0% |
| ! | TAAAATCAAGGAAAAAATGG+AGG | + | chr6_3:13663403-13663422 | Msa0940830:CDS | 25.0% |
| ! | AACAAGATAAATAATAGAGC+TGG | + | chr6_3:13663744-13663763 | Msa0940830:CDS | 25.0% |
| ! | AACAACTATGCTAGAAAAAT+TGG | + | chr6_3:13663794-13663813 | Msa0940830:CDS | 25.0% |
| !!! | AAGTGCTTTTTCATATACTA+TGG | + | chr6_3:13663988-13664007 | Msa0940830:intron | 25.0% |
| !!! | AGTGCTTTTTCATATACTAT+GGG | + | chr6_3:13663989-13664008 | Msa0940830:intron | 25.0% |
| ! | AATAAGCTATTTATCCAAAC+AGG | - | chr6_3:13664015-13664034 | None:intergenic | 25.0% |
| ! | AACTTATTTCAATAAGCTAG+AGG | - | chr6_3:13664302-13664321 | None:intergenic | 25.0% |
| ! | TAATTGCTAAATGATTGAAG+TGG | + | chr6_3:13664347-13664366 | Msa0940830:intron | 25.0% |
| ! | TTAGATGTATTTAGAGACAT+TGG | + | chr6_3:13664479-13664498 | Msa0940830:intron | 25.0% |
| ! | TAGATGTATTTAGAGACATT+GGG | + | chr6_3:13664480-13664499 | Msa0940830:intron | 25.0% |
| ! | GAAATAGATAGAGAAAATAG+AGG | + | chr6_3:13664635-13664654 | Msa0940830:intron | 25.0% |
| !! | GTTTTCTATATTTTGTTGCA+TGG | - | chr6_3:13664715-13664734 | None:intergenic | 25.0% |
| ! | CAACAAAATATAGAAAACAG+TGG | + | chr6_3:13664717-13664736 | Msa0940830:intron | 25.0% |
| ! | CAAAAAAAACAGAGGAAAAA+TGG | + | chr6_3:13664757-13664776 | Msa0940830:intron | 25.0% |
| !! | TACATTCATATAATGGAAAG+GGG | + | chr6_3:13665011-13665030 | Msa0940830:intron | 25.0% |
| ! | TCAATTTAGTTGAAGGAAAT+GGG | - | chr6_3:13665243-13665262 | None:intergenic | 25.0% |
| ! | ATCAATTTAGTTGAAGGAAA+TGG | - | chr6_3:13665244-13665263 | None:intergenic | 25.0% |
| ! | AGAAAAAACAGAGAAAATAG+AGG | + | chr6_3:13665392-13665411 | Msa0940830:intron | 25.0% |
| !! | ATTTTCTTTTCAGAGTTCAA+TGG | + | chr6_3:13665806-13665825 | Msa0940830:intron | 25.0% |
| ! | AGAAGTAAGATATAATACCT+GGG | - | chr6_3:13665899-13665918 | None:intergenic | 25.0% |
| !! | TCATGAACTTGTTTATAGTA+GGG | + | chr6_3:13665954-13665973 | Msa0940830:intron | 25.0% |
| ! | TTATGTGATTTCTTGTATGT+TGG | + | chr6_3:13666083-13666102 | Msa0940830:intron | 25.0% |
| ! | AATAAAAGTAAGAATCCAGT+TGG | + | chr6_3:13666380-13666399 | Msa0940830:intron | 25.0% |
| ! | ATAAAAGTAAGAATCCAGTT+GGG | + | chr6_3:13666381-13666400 | Msa0940830:intron | 25.0% |
| ! | ATAAGATTATGGAAATGGAA+CGG | - | chr6_3:13666420-13666439 | None:intergenic | 25.0% |
| ! | AAACGATAAGATTATGGAAA+TGG | - | chr6_3:13666425-13666444 | None:intergenic | 25.0% |
| ! | CGATAAAAACGATAAGATTA+TGG | - | chr6_3:13666431-13666450 | None:intergenic | 25.0% |
| !! | ATTTTAGATAAACAGCTTCA+TGG | + | chr6_3:13666553-13666572 | Msa0940830:CDS | 25.0% |
| !! | TTTTATCGCGACAAAATAAA+TGG | + | chr6_3:13666680-13666699 | Msa0940830:intron | 25.0% |
| !!! | CTTCAATTTTGGTTCCATTT+TGG | - | chr6_3:13662183-13662202 | None:intergenic | 30.0% |
| GAAAGAAAAAAAACAATGGC+AGG | + | chr6_3:13662262-13662281 | Msa0940830:exon | 30.0% | |
| !!! | AACGTAGGTTTTTTGAGAAT+CGG | - | chr6_3:13662374-13662393 | None:intergenic | 30.0% |
| ! | GTTGTCGAGTTTTTATTGAA+TGG | + | chr6_3:13662604-13662623 | Msa0940830:intron | 30.0% |
| ATTCGTGGAATGAAATTGTT+AGG | + | chr6_3:13662645-13662664 | Msa0940830:intron | 30.0% | |
| GTTAATTTAGACACGATGAA+CGG | + | chr6_3:13662785-13662804 | Msa0940830:intron | 30.0% | |
| ACTCTTTGGATAAACAACTT+TGG | + | chr6_3:13662913-13662932 | Msa0940830:intron | 30.0% | |
| CTCTTTGGATAAACAACTTT+GGG | + | chr6_3:13662914-13662933 | Msa0940830:intron | 30.0% | |
| !! | ATTTTTGAGCCAGTCAATTT+TGG | + | chr6_3:13663133-13663152 | Msa0940830:intron | 30.0% |
| AGTTTCATACCAAAATTGAC+TGG | - | chr6_3:13663145-13663164 | None:intergenic | 30.0% | |
| ! | GGTCGAAGATTTTCAATTTT+AGG | + | chr6_3:13663183-13663202 | Msa0940830:intron | 30.0% |
| ! | CTTGATTTTATTCTCGCAAT+TGG | - | chr6_3:13663393-13663412 | None:intergenic | 30.0% |
| CAATTGCGAGAATAAAATCA+AGG | + | chr6_3:13663391-13663410 | Msa0940830:CDS | 30.0% | |
| !!! | GTGGTTTGCTATGTATTTTT+GGG | + | chr6_3:13663548-13663567 | Msa0940830:intron | 30.0% |
| !!! | TGTTGTTGATTCGTATGTTT+TGG | + | chr6_3:13663606-13663625 | Msa0940830:intron | 30.0% |
| !!! | GTTGTTGATTCGTATGTTTT+GGG | + | chr6_3:13663607-13663626 | Msa0940830:intron | 30.0% |
| !!! | TTGTTGATTCGTATGTTTTG+GGG | + | chr6_3:13663608-13663627 | Msa0940830:intron | 30.0% |
| TTATTCAGTCAGCTATTCTA+GGG | + | chr6_3:13663956-13663975 | Msa0940830:intron | 30.0% | |
| GAATTGATGAAAACAGCTTA+TGG | - | chr6_3:13664209-13664228 | None:intergenic | 30.0% | |
| TCAAATAAGCCAATCTAAAC+AGG | + | chr6_3:13664268-13664287 | Msa0940830:intron | 30.0% | |
| TCAATAAGCTAGAGGAAATA+GGG | - | chr6_3:13664294-13664313 | None:intergenic | 30.0% | |
| TTCAATAAGCTAGAGGAAAT+AGG | - | chr6_3:13664295-13664314 | None:intergenic | 30.0% | |
| TCTTCTGTCAAGTATCAATT+CGG | + | chr6_3:13664394-13664413 | Msa0940830:intron | 30.0% | |
| ! | ATTAGTCTCCAATTTCTCAA+GGG | - | chr6_3:13664430-13664449 | None:intergenic | 30.0% |
| ! | AATTAGTCTCCAATTTCTCA+AGG | - | chr6_3:13664431-13664450 | None:intergenic | 30.0% |
| AGACTAATTCGATACATTCA+AGG | + | chr6_3:13664442-13664461 | Msa0940830:intron | 30.0% | |
| TAAACACAAGGAACATAACA+CGG | + | chr6_3:13664573-13664592 | Msa0940830:intron | 30.0% | |
| !!! | ATTACCTCTGTTTTTATGCT+TGG | - | chr6_3:13664674-13664693 | None:intergenic | 30.0% |
| CATAAAAACAGAGGTAATAG+AGG | + | chr6_3:13664676-13664695 | Msa0940830:intron | 30.0% | |
| AAAAACGGCAAAAAAAACAG+AGG | + | chr6_3:13664749-13664768 | Msa0940830:intron | 30.0% | |
| !!! | CGCTATTTTTCAAAAGAAAC+AGG | - | chr6_3:13665210-13665229 | None:intergenic | 30.0% |
| AGAGAAAATAGAGGAAAAAC+AGG | + | chr6_3:13665401-13665420 | Msa0940830:intron | 30.0% | |
| !! | ATTATTGTTTCAGTTCTGGA+AGG | - | chr6_3:13665746-13665765 | None:intergenic | 30.0% |
| GAAGTAAGATATAATACCTG+GGG | - | chr6_3:13665898-13665917 | None:intergenic | 30.0% | |
| CAGAAGTAAGATATAATACC+TGG | - | chr6_3:13665900-13665919 | None:intergenic | 30.0% | |
| ! | GTCATGAACTTGTTTATAGT+AGG | + | chr6_3:13665953-13665972 | Msa0940830:intron | 30.0% |
| AAACAAAACTATACTGAGTC+AGG | - | chr6_3:13666030-13666049 | None:intergenic | 30.0% | |
| TTTAGTGATATGTTACCGAA+TGG | + | chr6_3:13666162-13666181 | Msa0940830:intron | 30.0% | |
| ACATGCAGAATAAAACCATT+CGG | - | chr6_3:13666180-13666199 | None:intergenic | 30.0% | |
| !!! | GTTTTGGAATATTTCTAGGT+TGG | + | chr6_3:13666241-13666260 | Msa0940830:intron | 30.0% |
| TAAAAGTAAGAATCCAGTTG+GGG | + | chr6_3:13666382-13666401 | Msa0940830:intron | 30.0% | |
| ! | CATAGTTTGTCAGATTATGA+TGG | + | chr6_3:13666949-13666968 | Msa0940830:CDS | 30.0% |
| !! | AGTTGATAGAAACATATGAC+TGG | + | chr6_3:13667157-13667176 | Msa0940830:three_prime_UTR | 30.0% |
| TATATATATATACGCACACG+AGG | - | chr6_3:13667207-13667226 | None:intergenic | 30.0% | |
| ATAAGTTAAGGAGCAAAGCA+TGG | + | chr6_3:13662131-13662150 | Msa0940830:five_prime_UTR | 35.0% | |
| AACCAGAAAGAAAAAGAGAG+AGG | + | chr6_3:13662223-13662242 | Msa0940830:five_prime_UTR | 35.0% | |
| AGAAAGAAAAAGAGAGAGGT+GGG | + | chr6_3:13662227-13662246 | Msa0940830:five_prime_UTR | 35.0% | |
| AATGGCAGGATTATTAGCAT+GGG | + | chr6_3:13662276-13662295 | Msa0940830:exon | 35.0% | |
| GCGTTGAGATAATTTAGTCT+GGG | + | chr6_3:13662667-13662686 | Msa0940830:intron | 35.0% | |
| AGTTACATTTAGGCACTCTT+TGG | + | chr6_3:13662899-13662918 | Msa0940830:intron | 35.0% | |
| GGCTCAAAAATTGACTGTTT+GGG | - | chr6_3:13663124-13663143 | None:intergenic | 35.0% | |
| TGGCTCAAAAATTGACTGTT+TGG | - | chr6_3:13663125-13663144 | None:intergenic | 35.0% | |
| !!! | ATGAGACTGATTTGGTTTTG+TGG | + | chr6_3:13663298-13663317 | Msa0940830:intron | 35.0% |
| !!! | TGATTTGGTTTTGTGGTATG+AGG | + | chr6_3:13663305-13663324 | Msa0940830:intron | 35.0% |
| AATCAAGGAAAAAATGGAGG+AGG | + | chr6_3:13663406-13663425 | Msa0940830:CDS | 35.0% | |
| ATACATAGCAAACCACCAAA+TGG | - | chr6_3:13663544-13663563 | None:intergenic | 35.0% | |
| !!! | GGTGGTTTGCTATGTATTTT+TGG | + | chr6_3:13663547-13663566 | Msa0940830:intron | 35.0% |
| ATGAAACTGAAAAGAAGCTG+AGG | + | chr6_3:13663643-13663662 | Msa0940830:CDS | 35.0% | |
| TGAAACTGAAAAGAAGCTGA+GGG | + | chr6_3:13663644-13663663 | Msa0940830:CDS | 35.0% | |
| AGCCAATCTTTGATATCTGA+GGG | + | chr6_3:13663708-13663727 | Msa0940830:CDS | 35.0% | |
| AACCCTCAGATATCAAAGAT+TGG | - | chr6_3:13663713-13663732 | None:intergenic | 35.0% | |
| AATCTTTGATATCTGAGGGT+TGG | + | chr6_3:13663712-13663731 | Msa0940830:CDS | 35.0% | |
| ATCTTTGATATCTGAGGGTT+GGG | + | chr6_3:13663713-13663732 | Msa0940830:CDS | 35.0% | |
| CTTATTCAGTCAGCTATTCT+AGG | + | chr6_3:13663955-13663974 | Msa0940830:intron | 35.0% | |
| CTTATCTAGTGGCATAAGTT+TGG | - | chr6_3:13664247-13664266 | None:intergenic | 35.0% | |
| GCTTATTTGAGCTTATCTAG+TGG | - | chr6_3:13664258-13664277 | None:intergenic | 35.0% | |
| ! | AAATGATTGAAGTGGTGTTG+TGG | + | chr6_3:13664355-13664374 | Msa0940830:intron | 35.0% |
| TTAGTCTCCAATTTCTCAAG+GGG | - | chr6_3:13664429-13664448 | None:intergenic | 35.0% | |
| TGATTGATTGCAATGTAGTC+AGG | + | chr6_3:13664510-13664529 | Msa0940830:intron | 35.0% | |
| TTGTGTTTACGTTCTTTCAC+CGG | - | chr6_3:13664562-13664581 | None:intergenic | 35.0% | |
| AGAAAATAGAGGGAAAACAG+AGG | + | chr6_3:13664646-13664665 | Msa0940830:intron | 35.0% | |
| AGGTAATAGAGGAAAAACAG+AGG | + | chr6_3:13664687-13664706 | Msa0940830:intron | 35.0% | |
| ATAGAAAACAGTGGAAACAG+AGG | + | chr6_3:13664726-13664745 | Msa0940830:intron | 35.0% | |
| GGAAAAATGGCAAAAAACAG+AGG | + | chr6_3:13664770-13664789 | Msa0940830:intron | 35.0% | |
| TTAGAGATTAATGCGACCAA+CGG | + | chr6_3:13664907-13664926 | Msa0940830:intron | 35.0% | |
| AGTTCAGAAAGATTTACCGT+TGG | - | chr6_3:13664926-13664945 | None:intergenic | 35.0% | |
| ! | CTAAAGAACTTGATAGCAGT+TGG | + | chr6_3:13664961-13664980 | Msa0940830:intron | 35.0% |
| ! | ATTCATATAATGGAAAGGGG+AGG | + | chr6_3:13665014-13665033 | Msa0940830:intron | 35.0% |
| !! | GACATGCTTTATTTCGTTTG+AGG | + | chr6_3:13665046-13665065 | Msa0940830:intron | 35.0% |
| CAGTGCATGCATCATAAAAT+TGG | - | chr6_3:13665151-13665170 | None:intergenic | 35.0% | |
| TTAGTTGAAGGAAATGGGTA+AGG | - | chr6_3:13665238-13665257 | None:intergenic | 35.0% | |
| TCATGATCAAGATCCTAAGT+AGG | + | chr6_3:13665285-13665304 | Msa0940830:intron | 35.0% | |
| ATCAAGATCCTAAGTAGGAT+TGG | + | chr6_3:13665290-13665309 | Msa0940830:intron | 35.0% | |
| ATGTAACACAGTTCGTAAGT+AGG | + | chr6_3:13665343-13665362 | Msa0940830:intron | 35.0% | |
| ACAAGCACACAAAAAAACAG+AGG | + | chr6_3:13665426-13665445 | Msa0940830:intron | 35.0% | |
| AAAACGAACCTGAGTAAAGT+CGG | + | chr6_3:13665478-13665497 | Msa0940830:intron | 35.0% | |
| ! | TTCTTTTCAGAGTTCAATGG+AGG | + | chr6_3:13665809-13665828 | Msa0940830:intron | 35.0% |
| !! | TAAAAGCACTGGAGAAGAAA+TGG | + | chr6_3:13665838-13665857 | Msa0940830:CDS | 35.0% |
| !! | AAAAGCACTGGAGAAGAAAT+GGG | + | chr6_3:13665839-13665858 | Msa0940830:CDS | 35.0% |
| TAAGATATAATACCTGGGGA+AGG | - | chr6_3:13665894-13665913 | None:intergenic | 35.0% | |
| TGTACACATCATCATGCAAT+CGG | - | chr6_3:13665930-13665949 | None:intergenic | 35.0% | |
| AAAATGCTGACAACTCTTGT+TGG | + | chr6_3:13666213-13666232 | Msa0940830:intron | 35.0% | |
| AAATGCTGACAACTCTTGTT+GGG | + | chr6_3:13666214-13666233 | Msa0940830:intron | 35.0% | |
| !!! | ACTCTTGTTGGGTTTTGTTT+TGG | + | chr6_3:13666225-13666244 | Msa0940830:intron | 35.0% |
| TACAAACAGAACCATCATGA+AGG | - | chr6_3:13666330-13666349 | None:intergenic | 35.0% | |
| AAAAGTAAGAATCCAGTTGG+GGG | + | chr6_3:13666383-13666402 | Msa0940830:intron | 35.0% | |
| CTGAAAGCAAGAAAGAAAGA+CGG | - | chr6_3:13666782-13666801 | None:intergenic | 35.0% | |
| TGGAAAGATTGAATGCACAA+TGG | + | chr6_3:13666851-13666870 | Msa0940830:CDS | 35.0% | |
| CAAACTATGTACCTTATCAG+AGG | - | chr6_3:13666938-13666957 | None:intergenic | 35.0% | |
| TTTCATGGTCGACACCAAAA+TGG | + | chr6_3:13662166-13662185 | Msa0940830:five_prime_UTR | 40.0% | |
| ! | CACCTCTCTCTTTTTCTTTC+TGG | - | chr6_3:13662228-13662247 | None:intergenic | 40.0% |
| CAGAAAGAAAAAGAGAGAGG+TGG | + | chr6_3:13662226-13662245 | Msa0940830:five_prime_UTR | 40.0% | |
| CAATGGCAGGATTATTAGCA+TGG | + | chr6_3:13662275-13662294 | Msa0940830:exon | 40.0% | |
| TGAGAATCGGAGAAGAGAAT+TGG | - | chr6_3:13662361-13662380 | None:intergenic | 40.0% | |
| !! | ACGTTGGAGAGAGTTAGTTT+TGG | - | chr6_3:13662410-13662429 | None:intergenic | 40.0% |
| GTAGATCTTGAATCGAACGT+TGG | - | chr6_3:13662426-13662445 | None:intergenic | 40.0% | |
| AGAGAATGAGCATGAAGATG+AGG | - | chr6_3:13662487-13662506 | None:intergenic | 40.0% | |
| AACCAGACATCAGGTATGTA+CGG | + | chr6_3:13662552-13662571 | Msa0940830:intron | 40.0% | |
| CTCGACAACATTTCACTCAA+AGG | - | chr6_3:13662593-13662612 | None:intergenic | 40.0% | |
| ! | GGCGTTGAGATAATTTAGTC+TGG | + | chr6_3:13662666-13662685 | Msa0940830:intron | 40.0% |
| GTCTCAACAACGTCTTCAAT+TGG | - | chr6_3:13662866-13662885 | None:intergenic | 40.0% | |
| ! | ACTGTTTGGAATGACTGATG+TGG | + | chr6_3:13663162-13663181 | Msa0940830:intron | 40.0% |
| ATTACTACGGACCAAGTTAG+AGG | + | chr6_3:13663433-13663452 | Msa0940830:CDS | 40.0% | |
| !!! | ATTCGTATGTTTTGGGGTAC+AGG | + | chr6_3:13663614-13663633 | Msa0940830:intron | 40.0% |
| CTCAGATATCAAAGATTGGC+TGG | - | chr6_3:13663709-13663728 | None:intergenic | 40.0% | |
| CAGCCAATCTTTGATATCTG+AGG | + | chr6_3:13663707-13663726 | Msa0940830:CDS | 40.0% | |
| TCATATACTATGGGCCTGTT+TGG | + | chr6_3:13663998-13664017 | Msa0940830:intron | 40.0% | |
| ! | TAAGTTTGGTGAGACTGTTC+AGG | - | chr6_3:13664233-13664252 | None:intergenic | 40.0% |
| GAAATAGGGCCTGTTTAGAT+TGG | - | chr6_3:13664280-13664299 | None:intergenic | 40.0% | |
| ! | AGATTAGCCCCTTGAGAAAT+TGG | + | chr6_3:13664419-13664438 | Msa0940830:intron | 40.0% |
| GGTGAAAGAACGTAAACACA+AGG | + | chr6_3:13664561-13664580 | Msa0940830:intron | 40.0% | |
| ACACGGTTCGTAAGTAAGAT+TGG | + | chr6_3:13664590-13664609 | Msa0940830:intron | 40.0% | |
| GGTTCGTAAGTAAGATTGGT+AGG | + | chr6_3:13664594-13664613 | Msa0940830:intron | 40.0% | |
| CAGTGGAAACAGAGGAAAAA+CGG | + | chr6_3:13664734-13664753 | Msa0940830:intron | 40.0% | |
| ! | AGATCCTAAGTAGGATTGGT+CGG | + | chr6_3:13665294-13665313 | Msa0940830:intron | 40.0% |
| ! | TCTTGTTTACGTTCCTTCAC+CGG | - | chr6_3:13665320-13665339 | None:intergenic | 40.0% |
| ACACAGTTCGTAAGTAGGAT+CGG | + | chr6_3:13665348-13665367 | Msa0940830:intron | 40.0% | |
| !! | GTTGCGTTTTGCATTTTGAC+TGG | + | chr6_3:13665658-13665677 | Msa0940830:intron | 40.0% |
| GTGACGCTTGCATTAATTGT+TGG | + | chr6_3:13665700-13665719 | Msa0940830:intron | 40.0% | |
| ! | TTTCTAGGTTGGACATGTAG+AGG | + | chr6_3:13666252-13666271 | Msa0940830:intron | 40.0% |
| ! | TTCTAGGTTGGACATGTAGA+GGG | + | chr6_3:13666253-13666272 | Msa0940830:intron | 40.0% |
| TCAGCAACTAGCAGTTAAAC+AGG | + | chr6_3:13666582-13666601 | Msa0940830:CDS | 40.0% | |
| CACAGAAGTAACAGCTCAAA+TGG | - | chr6_3:13666726-13666745 | None:intergenic | 40.0% | |
| ! | GAGCTGTTACTTCTGTGTAT+TGG | + | chr6_3:13666729-13666748 | Msa0940830:intron | 40.0% |
| AGAAATTCACCCGAAAGAGA+TGG | + | chr6_3:13666825-13666844 | Msa0940830:CDS | 40.0% | |
| ! | GCTAGAAATCGTTTTGTCAG+AGG | + | chr6_3:13666910-13666929 | Msa0940830:CDS | 40.0% |
| CAGATTATGATGGTCATCAG+AGG | + | chr6_3:13666959-13666978 | Msa0940830:CDS | 40.0% | |
| GCAGATGTAGTAGGAGGAAA+CGG | + | chr6_3:13662301-13662320 | Msa0940830:CDS | 45.0% | |
| TATCAGGAGGAGGCAATCTA+AGG | - | chr6_3:13662450-13662469 | None:intergenic | 45.0% | |
| TCATTCCTCAACCAGACATC+AGG | + | chr6_3:13662543-13662562 | Msa0940830:CDS | 45.0% | |
| ACATACCTGATGTCTGGTTG+AGG | - | chr6_3:13662551-13662570 | None:intergenic | 45.0% | |
| TTCCGTACATACCTGATGTC+TGG | - | chr6_3:13662557-13662576 | None:intergenic | 45.0% | |
| !!! | TGGTTTTGTGGTATGAGGAC+AGG | + | chr6_3:13663310-13663329 | Msa0940830:intron | 45.0% |
| TGGAGGAGGCTGAATTACTA+CGG | + | chr6_3:13663420-13663439 | Msa0940830:CDS | 45.0% | |
| ! | GTGTGTGTATGTGTGCCATT+TGG | + | chr6_3:13663526-13663545 | Msa0940830:intron | 45.0% |
| !! | TGTGTATGTGTGCCATTTGG+TGG | + | chr6_3:13663529-13663548 | Msa0940830:intron | 45.0% |
| !!! | ATGTTTTGGGGTACAGGAGA+TGG | + | chr6_3:13663620-13663639 | Msa0940830:intron | 45.0% |
| TTTGATATCTGAGGGTTGGG+AGG | + | chr6_3:13663716-13663735 | Msa0940830:CDS | 45.0% | |
| GGATGAGAAGAAGAAAGAGC+TGG | + | chr6_3:13663815-13663834 | Msa0940830:CDS | 45.0% | |
| GATCGAGATCCTACTAGGAT+CGG | + | chr6_3:13664532-13664551 | Msa0940830:intron | 45.0% | |
| GGAGCCAAGCATAAAAACAG+AGG | + | chr6_3:13664667-13664686 | Msa0940830:intron | 45.0% | |
| GCTTCGACTTTACTCTGGTT+CGG | - | chr6_3:13664809-13664828 | None:intergenic | 45.0% | |
| ATCGTGCTTCGACTTTACTC+TGG | - | chr6_3:13664814-13664833 | None:intergenic | 45.0% | |
| GGTGAAGGAACGTAAACAAG+AGG | + | chr6_3:13665319-13665338 | Msa0940830:intron | 45.0% | |
| AGTTCGTAAGTAGGATCGGT+AGG | + | chr6_3:13665352-13665371 | Msa0940830:intron | 45.0% | |
| !!! | GCGTTTTGCATTTTGACTGG+TGG | + | chr6_3:13665661-13665680 | Msa0940830:intron | 45.0% |
| ! | GGAGGATACTGTAAAAGCAC+TGG | + | chr6_3:13665827-13665846 | Msa0940830:CDS | 45.0% |
| ATACTGAGTCAGGCATCACA+TGG | - | chr6_3:13666020-13666039 | None:intergenic | 45.0% | |
| GAATCAAAGTTACCCCCAAC+TGG | - | chr6_3:13666398-13666417 | None:intergenic | 45.0% | |
| TTGCTTTCAGACACAAGCTG+AGG | + | chr6_3:13666792-13666811 | Msa0940830:intron | 45.0% | |
| TGCTTTCAGACACAAGCTGA+GGG | + | chr6_3:13666793-13666812 | Msa0940830:intron | 45.0% | |
| TTTCCAGCTCCATCTCTTTC+GGG | - | chr6_3:13666837-13666856 | None:intergenic | 45.0% | |
| CTTTCCAGCTCCATCTCTTT+CGG | - | chr6_3:13666838-13666857 | None:intergenic | 45.0% | |
| TTTCAGTTCTGCCTGCAGAA+TGG | - | chr6_3:13666993-13667012 | None:intergenic | 45.0% | |
| ! | AGCAGAGGCTTATGCTACTT+AGG | + | chr6_3:13667016-13667035 | Msa0940830:CDS | 45.0% |
| ! | GAGGCTTATGCTACTTAGGT+CGG | + | chr6_3:13667020-13667039 | Msa0940830:CDS | 45.0% |
| !!! | TAATAAGATAATTTTAATTT+TGG | - | chr6_3:13667105-13667124 | None:intergenic | 5.0% |
| GATGTAGTAGGAGGAAACGG+AGG | + | chr6_3:13662304-13662323 | Msa0940830:CDS | 50.0% | |
| AGACGCTGAGAGATATCAGG+AGG | - | chr6_3:13662463-13662482 | None:intergenic | 50.0% | |
| GGAAGACGCTGAGAGATATC+AGG | - | chr6_3:13662466-13662485 | None:intergenic | 50.0% | |
| CAGCGTCTCTTCTCTAAGCT+GGG | - | chr6_3:13663336-13663355 | None:intergenic | 50.0% | |
| TCAGCGTCTCTTCTCTAAGC+TGG | - | chr6_3:13663337-13663356 | None:intergenic | 50.0% | |
| GCTTAGAGAAGAGACGCTGA+AGG | + | chr6_3:13663337-13663356 | Msa0940830:CDS | 50.0% | |
| CCTCAGTCTCACCTCTAACT+TGG | - | chr6_3:13663447-13663466 | None:intergenic | 50.0% | |
| CCAAGTTAGAGGTGAGACTG+AGG | + | chr6_3:13663444-13663463 | Msa0940830:intron | 50.0% | |
| GTCAGGATCGAGATCCTACT+AGG | + | chr6_3:13664527-13664546 | Msa0940830:intron | 50.0% | |
| GAGATCCTACTAGGATCGGT+CGG | + | chr6_3:13664536-13664555 | Msa0940830:intron | 50.0% | |
| GTAAAGTCGAAGCACGATCG+AGG | + | chr6_3:13664816-13664835 | Msa0940830:intron | 50.0% | |
| ATCGTGCGATCCTATGACCT+GGG | + | chr6_3:13664855-13664874 | Msa0940830:intron | 50.0% | |
| ACCTGAGTAAAGTCGGAGCA+CGG | + | chr6_3:13665485-13665504 | Msa0940830:intron | 50.0% | |
| GTTGGACATGTAGAGGGACT+AGG | + | chr6_3:13666259-13666278 | Msa0940830:intron | 50.0% | |
| !!! | AGGGACTAGGCTGCTTTTCT+AGG | + | chr6_3:13666272-13666291 | Msa0940830:intron | 50.0% |
| TGTCAGAGGCTCCTCTGATA+AGG | + | chr6_3:13666924-13666943 | Msa0940830:CDS | 50.0% | |
| AGGCTTCCTTACCATTCTGC+AGG | + | chr6_3:13666979-13666998 | Msa0940830:CDS | 50.0% | |
| GTTCTGCCTGCAGAATGGTA+AGG | - | chr6_3:13666988-13667007 | None:intergenic | 50.0% | |
| GCAGAACTGAAAGTCAGCAG+AGG | + | chr6_3:13667001-13667020 | Msa0940830:CDS | 50.0% | |
| GCATGGGCAGCAGATGTAGT+AGG | + | chr6_3:13662292-13662311 | Msa0940830:CDS | 55.0% | |
| TGGGCAGCAGATGTAGTAGG+AGG | + | chr6_3:13662295-13662314 | Msa0940830:CDS | 55.0% | |
| GGAATCGAGTTCGCGAACGT+AGG | - | chr6_3:13662389-13662408 | None:intergenic | 55.0% | |
| CGCTGAGAGATATCAGGAGG+AGG | - | chr6_3:13662460-13662479 | None:intergenic | 55.0% | |
| AAAGAAGCTGAGGGCTGAGC+TGG | + | chr6_3:13663653-13663672 | Msa0940830:CDS | 55.0% | |
| GATCGTGCGATCCTATGACC+TGG | + | chr6_3:13664854-13664873 | Msa0940830:intron | 55.0% | |
| ACGATCGAGTCCCAGGTCAT+AGG | - | chr6_3:13664868-13664887 | None:intergenic | 55.0% | |
| TATGACCTGGGACTCGATCG+TGG | + | chr6_3:13664867-13664886 | Msa0940830:intron | 55.0% | |
| !! | CCTAAGTAGGATTGGTCGGC+CGG | + | chr6_3:13665298-13665317 | Msa0940830:intron | 55.0% |
| ACCGTGCTCCGACTTTACTC+AGG | - | chr6_3:13665489-13665508 | None:intergenic | 55.0% | |
| GTAAAGTCGGAGCACGGTTG+AGG | + | chr6_3:13665491-13665510 | Msa0940830:intron | 55.0% | |
| GCACTAAAACAGCCTTCCCC+AGG | + | chr6_3:13665879-13665898 | Msa0940830:CDS | 55.0% | |
| TCACCCGAAAGAGATGGAGC+TGG | + | chr6_3:13666831-13666850 | Msa0940830:CDS | 55.0% | |
| TCCTACTAGGATCGGTCGGC+CGG | + | chr6_3:13664540-13664559 | Msa0940830:intron | 60.0% | |
| !! | GAAGCACGATCGAGGTGCTG+TGG | + | chr6_3:13664824-13664843 | Msa0940830:intron | 60.0% |
| TGTAGCCACGATCGAGTCCC+AGG | - | chr6_3:13664875-13664894 | None:intergenic | 60.0% | |
| CCGGCCGACCAATCCTACTT+AGG | - | chr6_3:13665301-13665320 | None:intergenic | 60.0% | |
| !! | TAGGATTGGTCGGCCGGTGA+AGG | + | chr6_3:13665304-13665323 | Msa0940830:intron | 60.0% |
| GAGCACGGTTGAGGTGACGT+GGG | + | chr6_3:13665500-13665519 | Msa0940830:intron | 60.0% | |
| ACCGGCCGACCGATCCTAGT+AGG | - | chr6_3:13664544-13664563 | None:intergenic | 65.0% | |
| GGAGCACGGTTGAGGTGACG+TGG | + | chr6_3:13665499-13665518 | Msa0940830:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 13662113 | 13667251 | 13662113 | ID=Msa0940830;Name=Msa0940830 |
| chr6_3 | mRNA | 13662113 | 13667251 | 13662113 | ID=Msa0940830-mRNA-1;Parent=Msa0940830;Name=Msa0940830-mRNA-1;_AED=0.05;_eAED=0.05;_QI=164|1|1|1|1|1|6|150|352 |
| chr6_3 | exon | 13662113 | 13662564 | 13662113 | ID=Msa0940830-mRNA-1:exon:4362;Parent=Msa0940830-mRNA-1 |
| chr6_3 | exon | 13663332 | 13663454 | 13663332 | ID=Msa0940830-mRNA-1:exon:4363;Parent=Msa0940830-mRNA-1 |
| chr6_3 | exon | 13663636 | 13663836 | 13663636 | ID=Msa0940830-mRNA-1:exon:4364;Parent=Msa0940830-mRNA-1 |
| chr6_3 | exon | 13665819 | 13665900 | 13665819 | ID=Msa0940830-mRNA-1:exon:4365;Parent=Msa0940830-mRNA-1 |
| chr6_3 | exon | 13666539 | 13666603 | 13666539 | ID=Msa0940830-mRNA-1:exon:4366;Parent=Msa0940830-mRNA-1 |
| chr6_3 | exon | 13666802 | 13667251 | 13666802 | ID=Msa0940830-mRNA-1:exon:4367;Parent=Msa0940830-mRNA-1 |
| chr6_3 | five_prime_UTR | 13662113 | 13662276 | 13662113 | ID=Msa0940830-mRNA-1:five_prime_utr;Parent=Msa0940830-mRNA-1 |
| chr6_3 | CDS | 13662277 | 13662564 | 13662277 | ID=Msa0940830-mRNA-1:cds;Parent=Msa0940830-mRNA-1 |
| chr6_3 | CDS | 13663332 | 13663454 | 13663332 | ID=Msa0940830-mRNA-1:cds;Parent=Msa0940830-mRNA-1 |
| chr6_3 | CDS | 13663636 | 13663836 | 13663636 | ID=Msa0940830-mRNA-1:cds;Parent=Msa0940830-mRNA-1 |
| chr6_3 | CDS | 13665819 | 13665900 | 13665819 | ID=Msa0940830-mRNA-1:cds;Parent=Msa0940830-mRNA-1 |
| chr6_3 | CDS | 13666539 | 13666603 | 13666539 | ID=Msa0940830-mRNA-1:cds;Parent=Msa0940830-mRNA-1 |
| chr6_3 | CDS | 13666802 | 13667101 | 13666802 | ID=Msa0940830-mRNA-1:cds;Parent=Msa0940830-mRNA-1 |
| chr6_3 | three_prime_UTR | 13667102 | 13667251 | 13667102 | ID=Msa0940830-mRNA-1:three_prime_utr;Parent=Msa0940830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
