Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031080 | XP_013468863.1 | 95.337 | 193 | 8 | 1 | 1 | 193 | 1 | 192 | 1.09e-111 | 327 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031080 | sp|Q9SK27|ENL1_ARATH | 39.000 | 100 | 57 | 2 | 30 | 129 | 36 | 131 | 1.50e-19 | 84.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031080 | Msa0031120 | 0.918696 | 1.132627e-86 | -8.615850e-47 |
| Msa0031080 | Msa0073210 | 0.805863 | 1.087124e-49 | -8.615850e-47 |
| Msa0031080 | Msa0078390 | 0.899810 | 1.370318e-77 | -8.615850e-47 |
| Msa0031080 | Msa0126130 | 0.932602 | 6.655365e-95 | -8.615850e-47 |
| Msa0031080 | Msa0171060 | 0.961365 | 1.286629e-119 | -8.615850e-47 |
| Msa0031080 | Msa0236940 | 0.809038 | 2.304775e-50 | -8.615850e-47 |
| Msa0031080 | Msa0255720 | 0.812311 | 4.519245e-51 | -8.615850e-47 |
| Msa0031080 | Msa0495820 | 0.803812 | 2.914961e-49 | -8.615850e-47 |
| Msa0031080 | Msa0521530 | 0.808381 | 3.185137e-50 | -8.615850e-47 |
| Msa0031080 | Msa0566460 | 0.823637 | 1.244438e-53 | -8.615850e-47 |
| Msa0031080 | Msa0658120 | 0.811190 | 7.923559e-51 | -8.615850e-47 |
| Msa0031080 | Msa0689830 | 0.872717 | 2.566371e-67 | -8.615850e-47 |
| Msa0031080 | Msa0702970 | 0.813997 | 1.928299e-51 | -8.615850e-47 |
| Msa0031080 | Msa0731780 | 0.829418 | 5.206203e-55 | -8.615850e-47 |
| Msa0031080 | Msa0767280 | 0.811442 | 6.986494e-51 | -8.615850e-47 |
| Msa0031080 | Msa0771910 | 0.855124 | 7.784378e-62 | -8.615850e-47 |
| Msa0031080 | Msa0810080 | 0.834594 | 2.738884e-56 | -8.615850e-47 |
| Msa0031080 | Msa0846900 | 0.843688 | 1.201116e-58 | -8.615850e-47 |
| Msa0031080 | Msa0850600 | 0.859053 | 5.396456e-63 | -8.615850e-47 |
| Msa0031080 | Msa1021560 | 0.820215 | 7.715197e-53 | -8.615850e-47 |
| Msa0031080 | Msa1024570 | 0.807395 | 5.161561e-50 | -8.615850e-47 |
| Msa0031080 | Msa1041170 | 0.833625 | 4.790385e-56 | -8.615850e-47 |
| Msa0031080 | Msa1105580 | 0.802613 | 5.162161e-49 | -8.615850e-47 |
| Msa0031080 | Msa1124210 | 0.895325 | 1.067159e-75 | -8.615850e-47 |
| Msa0031080 | Msa1148930 | 0.827458 | 1.546872e-54 | -8.615850e-47 |
| Msa0031080 | Msa1334560 | 0.808517 | 2.979638e-50 | -8.615850e-47 |
| Msa0031080 | Msa1361990 | 0.836938 | 6.979002e-57 | -8.615850e-47 |
| Msa0031080 | Msa1395050 | 0.822607 | 2.164392e-53 | -8.615850e-47 |
| Msa0031080 | Msa1458790 | 0.829685 | 4.483338e-55 | -8.615850e-47 |
| Msa0031080 | Msa1462780 | 0.815633 | 8.363406e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031080 | MtrunA17_Chr1g0188981 | 95.337 | 193 | 8 | 1 | 1 | 193 | 1 | 192 | 1.00e-115 | 327 |
| Msa0031080 | MtrunA17_Chr6g0458331 | 40.351 | 114 | 65 | 2 | 28 | 141 | 36 | 146 | 8.83e-26 | 97.4 |
| Msa0031080 | MtrunA17_Chr4g0062341 | 34.132 | 167 | 91 | 7 | 26 | 187 | 29 | 181 | 1.77e-24 | 94.7 |
| Msa0031080 | MtrunA17_Chr4g0062311 | 34.132 | 167 | 91 | 7 | 26 | 187 | 29 | 181 | 1.77e-24 | 94.7 |
| Msa0031080 | MtrunA17_Chr1g0205701 | 34.177 | 158 | 84 | 3 | 9 | 152 | 8 | 159 | 5.76e-23 | 90.9 |
| Msa0031080 | MtrunA17_Chr4g0039721 | 31.902 | 163 | 92 | 5 | 26 | 184 | 29 | 176 | 4.27e-22 | 88.6 |
| Msa0031080 | MtrunA17_Chr1g0150131 | 38.776 | 98 | 59 | 1 | 32 | 129 | 29 | 125 | 1.42e-21 | 87.0 |
| Msa0031080 | MtrunA17_Chr2g0331181 | 32.895 | 152 | 92 | 3 | 6 | 152 | 7 | 153 | 1.65e-20 | 84.3 |
| Msa0031080 | MtrunA17_Chr5g0394321 | 31.892 | 185 | 112 | 5 | 11 | 192 | 7 | 180 | 2.27e-20 | 84.0 |
| Msa0031080 | MtrunA17_Chr3g0136871 | 33.858 | 127 | 78 | 2 | 32 | 153 | 31 | 156 | 3.62e-19 | 80.9 |
| Msa0031080 | MtrunA17_Chr2g0324721 | 32.886 | 149 | 92 | 3 | 26 | 174 | 24 | 164 | 4.14e-19 | 80.9 |
| Msa0031080 | MtrunA17_Chr4g0040291 | 35.200 | 125 | 76 | 3 | 28 | 150 | 24 | 145 | 6.47e-19 | 80.1 |
| Msa0031080 | MtrunA17_Chr4g0041811 | 35.514 | 107 | 68 | 1 | 23 | 129 | 26 | 131 | 1.17e-18 | 80.5 |
| Msa0031080 | MtrunA17_Chr2g0324711 | 35.246 | 122 | 73 | 2 | 8 | 129 | 7 | 122 | 1.61e-18 | 82.0 |
| Msa0031080 | MtrunA17_Chr2g0319611 | 36.111 | 108 | 68 | 1 | 23 | 129 | 20 | 127 | 1.98e-17 | 77.8 |
| Msa0031080 | MtrunA17_Chr8g0385041 | 38.655 | 119 | 68 | 3 | 27 | 145 | 23 | 136 | 6.05e-17 | 77.0 |
| Msa0031080 | MtrunA17_Chr8g0360371 | 28.689 | 122 | 84 | 1 | 8 | 129 | 3 | 121 | 9.20e-17 | 76.6 |
| Msa0031080 | MtrunA17_Chr2g0323021 | 32.836 | 134 | 75 | 5 | 32 | 156 | 29 | 156 | 3.24e-16 | 73.9 |
| Msa0031080 | MtrunA17_Chr8g0385031 | 33.051 | 118 | 76 | 2 | 13 | 129 | 7 | 122 | 2.27e-15 | 72.8 |
| Msa0031080 | MtrunA17_Chr2g0317231 | 32.759 | 116 | 69 | 4 | 26 | 138 | 22 | 131 | 1.18e-14 | 71.6 |
| Msa0031080 | MtrunA17_Chr6g0481491 | 28.226 | 124 | 82 | 3 | 7 | 129 | 5 | 122 | 2.63e-14 | 68.6 |
| Msa0031080 | MtrunA17_Chr4g0064041 | 30.345 | 145 | 84 | 4 | 13 | 152 | 8 | 140 | 9.33e-14 | 68.6 |
| Msa0031080 | MtrunA17_Chr4g0064041 | 28.177 | 181 | 109 | 3 | 29 | 190 | 191 | 369 | 8.13e-11 | 60.1 |
| Msa0031080 | MtrunA17_Chr8g0385021 | 33.051 | 118 | 76 | 2 | 13 | 129 | 7 | 122 | 1.08e-13 | 67.8 |
| Msa0031080 | MtrunA17_Chr8g0387804 | 33.333 | 99 | 64 | 1 | 31 | 129 | 31 | 127 | 1.18e-13 | 64.7 |
| Msa0031080 | MtrunA17_Chr1g0196801 | 31.915 | 141 | 85 | 5 | 29 | 169 | 23 | 152 | 1.92e-13 | 65.5 |
| Msa0031080 | MtrunA17_Chr4g0073901 | 29.126 | 103 | 71 | 2 | 28 | 129 | 28 | 129 | 7.33e-13 | 63.9 |
| Msa0031080 | MtrunA17_Chr6g0459441 | 33.028 | 109 | 66 | 4 | 23 | 130 | 20 | 122 | 7.93e-12 | 61.2 |
| Msa0031080 | MtrunA17_Chr8g0335571 | 32.381 | 105 | 65 | 2 | 25 | 129 | 20 | 118 | 1.33e-11 | 60.8 |
| Msa0031080 | MtrunA17_Chr8g0335531 | 32.075 | 106 | 66 | 2 | 24 | 129 | 19 | 118 | 2.91e-11 | 59.7 |
| Msa0031080 | MtrunA17_Chr1g0185541 | 37.879 | 66 | 41 | 0 | 64 | 129 | 5 | 70 | 4.53e-11 | 56.6 |
| Msa0031080 | MtrunA17_Chr3g0132411 | 31.683 | 101 | 63 | 2 | 29 | 129 | 65 | 159 | 6.10e-11 | 58.5 |
| Msa0031080 | MtrunA17_Chr1g0211101 | 27.344 | 128 | 87 | 2 | 8 | 134 | 12 | 134 | 6.54e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031080 | AT1G64640.1 | 57.143 | 154 | 61 | 3 | 9 | 162 | 13 | 161 | 4.41e-54 | 171 |
| Msa0031080 | AT3G20570.1 | 38.793 | 116 | 69 | 1 | 14 | 129 | 15 | 128 | 7.88e-27 | 101 |
| Msa0031080 | AT1G79800.1 | 38.843 | 121 | 71 | 2 | 28 | 147 | 33 | 151 | 3.10e-22 | 89.4 |
| Msa0031080 | AT1G48940.1 | 38.318 | 107 | 63 | 2 | 24 | 129 | 21 | 125 | 5.89e-22 | 88.2 |
| Msa0031080 | AT3G18590.1 | 37.864 | 103 | 61 | 2 | 28 | 129 | 26 | 126 | 1.04e-20 | 85.5 |
| Msa0031080 | AT2G25060.1 | 39.000 | 100 | 57 | 2 | 30 | 129 | 36 | 131 | 1.53e-20 | 84.7 |
| Msa0031080 | AT4G31840.1 | 38.400 | 125 | 72 | 3 | 32 | 153 | 31 | 153 | 1.53e-20 | 84.7 |
| Msa0031080 | AT5G57920.1 | 37.755 | 98 | 60 | 1 | 32 | 129 | 27 | 123 | 2.41e-20 | 84.3 |
| Msa0031080 | AT5G57920.2 | 37.755 | 98 | 60 | 1 | 32 | 129 | 26 | 122 | 3.92e-20 | 83.6 |
| Msa0031080 | AT5G53870.2 | 35.152 | 165 | 95 | 6 | 8 | 169 | 12 | 167 | 5.15e-20 | 86.7 |
| Msa0031080 | AT5G53870.1 | 35.152 | 165 | 95 | 6 | 8 | 169 | 12 | 167 | 7.05e-20 | 86.3 |
| Msa0031080 | AT5G57920.3 | 37.755 | 98 | 60 | 1 | 32 | 129 | 59 | 155 | 7.89e-20 | 83.6 |
| Msa0031080 | AT4G27520.1 | 32.432 | 148 | 95 | 3 | 12 | 158 | 14 | 157 | 3.47e-19 | 84.0 |
| Msa0031080 | AT4G28365.1 | 32.867 | 143 | 87 | 5 | 27 | 166 | 27 | 163 | 4.44e-19 | 81.3 |
| Msa0031080 | AT5G14345.1 | 32.061 | 131 | 83 | 2 | 14 | 144 | 5 | 129 | 6.71e-19 | 79.3 |
| Msa0031080 | AT4G32490.1 | 33.333 | 108 | 69 | 1 | 27 | 134 | 29 | 133 | 2.12e-18 | 80.1 |
| Msa0031080 | AT5G25090.1 | 31.967 | 122 | 81 | 2 | 9 | 129 | 6 | 126 | 2.59e-18 | 79.0 |
| Msa0031080 | AT2G32300.1 | 28.049 | 164 | 110 | 2 | 1 | 164 | 1 | 156 | 5.62e-18 | 79.7 |
| Msa0031080 | AT2G32300.2 | 28.049 | 164 | 110 | 2 | 1 | 164 | 31 | 186 | 5.99e-18 | 80.1 |
| Msa0031080 | AT4G30590.1 | 35.714 | 98 | 62 | 1 | 32 | 129 | 32 | 128 | 1.71e-17 | 77.0 |
| Msa0031080 | AT2G23990.1 | 37.374 | 99 | 60 | 2 | 32 | 129 | 31 | 128 | 2.52e-17 | 76.6 |
| Msa0031080 | AT5G26330.1 | 38.614 | 101 | 59 | 2 | 29 | 129 | 24 | 121 | 7.65e-17 | 75.1 |
| Msa0031080 | AT2G23990.2 | 30.508 | 118 | 61 | 3 | 32 | 129 | 31 | 147 | 1.07e-12 | 64.7 |
| Msa0031080 | AT2G31050.1 | 32.857 | 140 | 87 | 4 | 5 | 142 | 6 | 140 | 1.15e-12 | 64.3 |
| Msa0031080 | AT1G45063.2 | 33.333 | 108 | 68 | 2 | 29 | 135 | 149 | 253 | 1.98e-12 | 64.7 |
| Msa0031080 | AT5G07475.1 | 30.400 | 125 | 72 | 4 | 31 | 155 | 32 | 141 | 2.05e-12 | 63.5 |
| Msa0031080 | AT1G45063.1 | 33.333 | 108 | 68 | 2 | 29 | 135 | 149 | 253 | 2.53e-12 | 64.7 |
| Msa0031080 | AT2G26720.1 | 27.778 | 144 | 98 | 2 | 1 | 142 | 1 | 140 | 7.29e-12 | 62.0 |
| Msa0031080 | AT3G60270.1 | 31.132 | 106 | 67 | 2 | 24 | 129 | 21 | 120 | 4.73e-11 | 59.7 |
| Msa0031080 | AT3G17675.1 | 30.303 | 99 | 64 | 1 | 31 | 129 | 34 | 127 | 4.88e-11 | 58.2 |
Find 48 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATCTGTAATTCTTTATT+TGG | 0.109686 | 1_1:-57656886 | Msa0031080:three_prime_UTR |
| ATCTGACGATTGGTTGAAAT+TGG | 0.199602 | 1_1:+57657762 | None:intergenic |
| AAGGGTGAAGTTGTGAAATT+TGG | 0.223732 | 1_1:+57657522 | None:intergenic |
| CATATATCTGTTGGAGGAAT+TGG | 0.263666 | 1_1:-57657177 | Msa0031080:CDS |
| CCATTGTTCATAAACAATAT+TGG | 0.281321 | 1_1:+57657285 | None:intergenic |
| AAAACACTTTGGTTTGGATT+TGG | 0.318460 | 1_1:+57657623 | None:intergenic |
| CCCTCTTCACAAACAGTGTT+TGG | 0.328717 | 1_1:-57657102 | Msa0031080:CDS |
| TACTTCACAAGTGGAGAAAA+TGG | 0.332320 | 1_1:-57657225 | Msa0031080:CDS |
| ATCCACAAGTCTATGCTAAA+TGG | 0.353275 | 1_1:-57657546 | Msa0031080:CDS |
| CAGTCATAACAACTGGTTCT+TGG | 0.354742 | 1_1:-57657671 | Msa0031080:CDS |
| GTTGTTATGACTGGCCATTT+TGG | 0.356548 | 1_1:+57657681 | None:intergenic |
| GAAAATAATAGAAACCAAAA+TGG | 0.373724 | 1_1:-57657695 | Msa0031080:exon |
| TTAGATCTCCAACTTTGAAT+TGG | 0.398002 | 1_1:+57657596 | None:intergenic |
| GGTAGCAAAACACTTTGGTT+TGG | 0.401653 | 1_1:+57657617 | None:intergenic |
| AGTTGGAGATCTAAATGCTT+GGG | 0.404972 | 1_1:-57657587 | Msa0031080:CDS |
| AATAATGTATGAAATTGAAA+GGG | 0.431516 | 1_1:+57657805 | None:intergenic |
| CCAAACACTGTTTGTGAAGA+GGG | 0.433432 | 1_1:+57657102 | None:intergenic |
| TTTGATGAAGAAGGAGCTAC+TGG | 0.443782 | 1_1:+57657072 | None:intergenic |
| CAAAAGATTCATATATCTGT+TGG | 0.454335 | 1_1:-57657186 | Msa0031080:CDS |
| AAATTTCACAACTTCACCCT+TGG | 0.467456 | 1_1:-57657520 | Msa0031080:CDS |
| AAATGGCCAGTCATAACAAC+TGG | 0.486950 | 1_1:-57657678 | Msa0031080:CDS |
| TGAGGTGAATTTGATGAAGA+AGG | 0.492141 | 1_1:+57657063 | None:intergenic |
| AACAAAGTATTGCATAATCA+AGG | 0.497229 | 1_1:+57656838 | None:intergenic |
| ATCAATGAATCTTGACTTGG+TGG | 0.501009 | 1_1:+57657351 | None:intergenic |
| TAATAATGTATGAAATTGAA+AGG | 0.501576 | 1_1:+57657804 | None:intergenic |
| TGTGAAGAGGGTGCAGATGC+AGG | 0.517498 | 1_1:+57657114 | None:intergenic |
| GACCATTTAGCATAGACTTG+TGG | 0.528971 | 1_1:+57657544 | None:intergenic |
| AATGTTGATGCTGAAGCTAA+TGG | 0.532427 | 1_1:-57657153 | Msa0031080:CDS |
| GAATTGGTAGCAAAACACTT+TGG | 0.533380 | 1_1:+57657612 | None:intergenic |
| CCAATATTGTTTATGAACAA+TGG | 0.534060 | 1_1:-57657285 | Msa0031080:CDS |
| GATGCAGGCAATGAAGAACT+TGG | 0.536171 | 1_1:+57657129 | None:intergenic |
| AAGTTGGAGATCTAAATGCT+TGG | 0.539050 | 1_1:-57657588 | Msa0031080:CDS |
| TCCAAACACTGTTTGTGAAG+AGG | 0.548927 | 1_1:+57657101 | None:intergenic |
| TGGCTTGCAAATCTGACGAT+TGG | 0.553537 | 1_1:+57657752 | None:intergenic |
| AAGATTCATATATCTGTTGG+AGG | 0.558686 | 1_1:-57657183 | Msa0031080:CDS |
| GACTTGTGGATTTGCTGAGG+TGG | 0.563923 | 1_1:+57657558 | None:intergenic |
| CAAGAACCAGTTGTTATGAC+TGG | 0.565931 | 1_1:+57657672 | None:intergenic |
| GGTGATTTCTACTTCACAAG+TGG | 0.570982 | 1_1:-57657234 | Msa0031080:CDS |
| ACTTACAAAGTGAGTCTCCA+AGG | 0.579525 | 1_1:+57657503 | None:intergenic |
| TGAATCAATGAATCTTGACT+TGG | 0.587776 | 1_1:+57657348 | None:intergenic |
| ACTTGTGGATTTGCTGAGGT+GGG | 0.610232 | 1_1:+57657559 | None:intergenic |
| GTTGGAGATCTAAATGCTTG+GGG | 0.615224 | 1_1:-57657586 | Msa0031080:CDS |
| TTGTTTAACATAACATCACA+TGG | 0.618399 | 1_1:-57657255 | Msa0031080:CDS |
| TGAAAAGTTGAAGTTAGATG+AGG | 0.630950 | 1_1:+57657045 | None:intergenic |
| ATAATGTATGAAATTGAAAG+GGG | 0.639252 | 1_1:+57657806 | None:intergenic |
| AGATTTAGGACCCTGCAATG+AGG | 0.667270 | 1_1:+57657720 | None:intergenic |
| ATAGACTTGTGGATTTGCTG+AGG | 0.672234 | 1_1:+57657555 | None:intergenic |
| CTTACAAAGTGAGTCTCCAA+GGG | 0.672775 | 1_1:+57657504 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGAAATTTAAGTAAAT+TGG | + | chr1_1:57657148-57657167 | None:intergenic | 10.0% |
| !! | AAAATGAAATTTAAGTAAAT+TGG | + | chr1_1:57657148-57657167 | None:intergenic | 10.0% |
| !! | AATAATGTATGAAATTGAAA+GGG | + | chr1_1:57656805-57656824 | None:intergenic | 15.0% |
| !! | TAATAATGTATGAAATTGAA+AGG | + | chr1_1:57656806-57656825 | None:intergenic | 15.0% |
| !!! | TCTATTATTTTCTTAGATTT+AGG | + | chr1_1:57656904-57656923 | None:intergenic | 15.0% |
| !! | ATTGGAATATATTGTATATA+TGG | + | chr1_1:57657130-57657149 | None:intergenic | 15.0% |
| !! | AAAATAAAATAAAAACAGCA+GGG | + | chr1_1:57657819-57657838 | None:intergenic | 15.0% |
| !! | AAAAATAAAATAAAAACAGC+AGG | + | chr1_1:57657820-57657839 | None:intergenic | 15.0% |
| !!! | TATTTCATTTCAAATTTTTG+GGG | + | chr1_1:57657845-57657864 | None:intergenic | 15.0% |
| !!! | GTATTTCATTTCAAATTTTT+GGG | + | chr1_1:57657846-57657865 | None:intergenic | 15.0% |
| !!! | AGTATTTCATTTCAAATTTT+TGG | + | chr1_1:57657847-57657866 | None:intergenic | 15.0% |
| !! | AATAATGTATGAAATTGAAA+GGG | + | chr1_1:57656805-57656824 | None:intergenic | 15.0% |
| !! | TAATAATGTATGAAATTGAA+AGG | + | chr1_1:57656806-57656825 | None:intergenic | 15.0% |
| !!! | TCTATTATTTTCTTAGATTT+AGG | + | chr1_1:57656904-57656923 | None:intergenic | 15.0% |
| !! | ATTGGAATATATTGTATATA+TGG | + | chr1_1:57657130-57657149 | None:intergenic | 15.0% |
| !! | AAAATAAAATAAAAACAGCA+GGG | + | chr1_1:57657819-57657838 | None:intergenic | 15.0% |
| !! | AAAAATAAAATAAAAACAGC+AGG | + | chr1_1:57657820-57657839 | None:intergenic | 15.0% |
| !!! | TATTTCATTTCAAATTTTTG+GGG | + | chr1_1:57657845-57657864 | None:intergenic | 15.0% |
| !!! | GTATTTCATTTCAAATTTTT+GGG | + | chr1_1:57657846-57657865 | None:intergenic | 15.0% |
| !!! | AGTATTTCATTTCAAATTTT+TGG | + | chr1_1:57657847-57657866 | None:intergenic | 15.0% |
| !! | ATAATGTATGAAATTGAAAG+GGG | + | chr1_1:57656804-57656823 | None:intergenic | 20.0% |
| !! | GAAAATAATAGAAACCAAAA+TGG | - | chr1_1:57656912-57656931 | Msa0031080:three_prime_UTR | 20.0% |
| !! | ATTGTAACAAAAACTCATAA+AGG | - | chr1_1:57657168-57657187 | Msa0031080:CDS | 20.0% |
| !! | TTGTAACAAAAACTCATAAA+GGG | - | chr1_1:57657169-57657188 | Msa0031080:CDS | 20.0% |
| !!! | TATGAATCTTTTGATTCTTT+TGG | + | chr1_1:57657414-57657433 | None:intergenic | 20.0% |
| !!! | ACTTTTCATGTGTTTATTAT+TGG | - | chr1_1:57657577-57657596 | Msa0031080:CDS | 20.0% |
| !! | TCAATCTGTAATTCTTTATT+TGG | - | chr1_1:57657721-57657740 | Msa0031080:five_prime_UTR | 20.0% |
| !! | AAATAAAATAAAAACAGCAG+GGG | + | chr1_1:57657818-57657837 | None:intergenic | 20.0% |
| !! | ATAATGTATGAAATTGAAAG+GGG | + | chr1_1:57656804-57656823 | None:intergenic | 20.0% |
| !! | GAAAATAATAGAAACCAAAA+TGG | - | chr1_1:57656912-57656931 | Msa0031080:three_prime_UTR | 20.0% |
| !! | ATTGTAACAAAAACTCATAA+AGG | - | chr1_1:57657168-57657187 | Msa0031080:CDS | 20.0% |
| !! | TTGTAACAAAAACTCATAAA+GGG | - | chr1_1:57657169-57657188 | Msa0031080:CDS | 20.0% |
| !!! | TATGAATCTTTTGATTCTTT+TGG | + | chr1_1:57657414-57657433 | None:intergenic | 20.0% |
| !!! | ACTTTTCATGTGTTTATTAT+TGG | - | chr1_1:57657577-57657596 | Msa0031080:CDS | 20.0% |
| !! | TCAATCTGTAATTCTTTATT+TGG | - | chr1_1:57657721-57657740 | Msa0031080:five_prime_UTR | 20.0% |
| !! | AAATAAAATAAAAACAGCAG+GGG | + | chr1_1:57657818-57657837 | None:intergenic | 20.0% |
| ! | CCATTGTTCATAAACAATAT+TGG | + | chr1_1:57657325-57657344 | None:intergenic | 25.0% |
| ! | CCAATATTGTTTATGAACAA+TGG | - | chr1_1:57657322-57657341 | Msa0031080:CDS | 25.0% |
| ! | TTGTTTAACATAACATCACA+TGG | - | chr1_1:57657352-57657371 | Msa0031080:CDS | 25.0% |
| ! | CAAAAGATTCATATATCTGT+TGG | - | chr1_1:57657421-57657440 | Msa0031080:intron | 25.0% |
| !!! | AACAAAGTATTGCATAATCA+AGG | + | chr1_1:57657772-57657791 | None:intergenic | 25.0% |
| ! | CCATTGTTCATAAACAATAT+TGG | + | chr1_1:57657325-57657344 | None:intergenic | 25.0% |
| ! | CCAATATTGTTTATGAACAA+TGG | - | chr1_1:57657322-57657341 | Msa0031080:CDS | 25.0% |
| ! | TTGTTTAACATAACATCACA+TGG | - | chr1_1:57657352-57657371 | Msa0031080:CDS | 25.0% |
| ! | CAAAAGATTCATATATCTGT+TGG | - | chr1_1:57657421-57657440 | Msa0031080:intron | 25.0% |
| !!! | AACAAAGTATTGCATAATCA+AGG | + | chr1_1:57657772-57657791 | None:intergenic | 25.0% |
| AATAAAAAGTCCTCATTGCA+GGG | - | chr1_1:57656877-57656896 | Msa0031080:three_prime_UTR | 30.0% | |
| !! | AAAACACTTTGGTTTGGATT+TGG | + | chr1_1:57656987-57657006 | None:intergenic | 30.0% |
| ! | TTTTGCTACCAATTCAAAGT+TGG | - | chr1_1:57657003-57657022 | Msa0031080:CDS | 30.0% |
| TTAGATCTCCAACTTTGAAT+TGG | + | chr1_1:57657014-57657033 | None:intergenic | 30.0% | |
| TGAATCAATGAATCTTGACT+TGG | + | chr1_1:57657262-57657281 | None:intergenic | 30.0% | |
| AAGATTCATATATCTGTTGG+AGG | - | chr1_1:57657424-57657443 | Msa0031080:intron | 30.0% | |
| TGAAAAGTTGAAGTTAGATG+AGG | + | chr1_1:57657565-57657584 | None:intergenic | 30.0% | |
| AATAAAAAGTCCTCATTGCA+GGG | - | chr1_1:57656877-57656896 | Msa0031080:three_prime_UTR | 30.0% | |
| !! | AAAACACTTTGGTTTGGATT+TGG | + | chr1_1:57656987-57657006 | None:intergenic | 30.0% |
| ! | TTTTGCTACCAATTCAAAGT+TGG | - | chr1_1:57657003-57657022 | Msa0031080:CDS | 30.0% |
| TTAGATCTCCAACTTTGAAT+TGG | + | chr1_1:57657014-57657033 | None:intergenic | 30.0% | |
| TGAATCAATGAATCTTGACT+TGG | + | chr1_1:57657262-57657281 | None:intergenic | 30.0% | |
| AAGATTCATATATCTGTTGG+AGG | - | chr1_1:57657424-57657443 | Msa0031080:intron | 30.0% | |
| TGAAAAGTTGAAGTTAGATG+AGG | + | chr1_1:57657565-57657584 | None:intergenic | 30.0% | |
| ! | ATCTGACGATTGGTTGAAAT+TGG | + | chr1_1:57656848-57656867 | None:intergenic | 35.0% |
| ! | CTGCAATGAGGACTTTTTAT+TGG | + | chr1_1:57656878-57656897 | None:intergenic | 35.0% |
| CAATAAAAAGTCCTCATTGC+AGG | - | chr1_1:57656876-57656895 | Msa0031080:three_prime_UTR | 35.0% | |
| ! | GAATTGGTAGCAAAACACTT+TGG | + | chr1_1:57656998-57657017 | None:intergenic | 35.0% |
| AAGTTGGAGATCTAAATGCT+TGG | - | chr1_1:57657019-57657038 | Msa0031080:CDS | 35.0% | |
| AGTTGGAGATCTAAATGCTT+GGG | - | chr1_1:57657020-57657039 | Msa0031080:CDS | 35.0% | |
| ATCCACAAGTCTATGCTAAA+TGG | - | chr1_1:57657061-57657080 | Msa0031080:CDS | 35.0% | |
| AAGGGTGAAGTTGTGAAATT+TGG | + | chr1_1:57657088-57657107 | None:intergenic | 35.0% | |
| AAATTTCACAACTTCACCCT+TGG | - | chr1_1:57657087-57657106 | Msa0031080:CDS | 35.0% | |
| !! | ATCAATGAATCTTGACTTGG+TGG | + | chr1_1:57657259-57657278 | None:intergenic | 35.0% |
| TACTTCACAAGTGGAGAAAA+TGG | - | chr1_1:57657382-57657401 | Msa0031080:intron | 35.0% | |
| CATATATCTGTTGGAGGAAT+TGG | - | chr1_1:57657430-57657449 | Msa0031080:intron | 35.0% | |
| AATGTTGATGCTGAAGCTAA+TGG | - | chr1_1:57657454-57657473 | Msa0031080:intron | 35.0% | |
| TGAGGTGAATTTGATGAAGA+AGG | + | chr1_1:57657547-57657566 | None:intergenic | 35.0% | |
| ! | ATCTGACGATTGGTTGAAAT+TGG | + | chr1_1:57656848-57656867 | None:intergenic | 35.0% |
| ! | CTGCAATGAGGACTTTTTAT+TGG | + | chr1_1:57656878-57656897 | None:intergenic | 35.0% |
| CAATAAAAAGTCCTCATTGC+AGG | - | chr1_1:57656876-57656895 | Msa0031080:three_prime_UTR | 35.0% | |
| ! | GAATTGGTAGCAAAACACTT+TGG | + | chr1_1:57656998-57657017 | None:intergenic | 35.0% |
| AAGTTGGAGATCTAAATGCT+TGG | - | chr1_1:57657019-57657038 | Msa0031080:CDS | 35.0% | |
| AGTTGGAGATCTAAATGCTT+GGG | - | chr1_1:57657020-57657039 | Msa0031080:CDS | 35.0% | |
| ATCCACAAGTCTATGCTAAA+TGG | - | chr1_1:57657061-57657080 | Msa0031080:CDS | 35.0% | |
| AAGGGTGAAGTTGTGAAATT+TGG | + | chr1_1:57657088-57657107 | None:intergenic | 35.0% | |
| AAATTTCACAACTTCACCCT+TGG | - | chr1_1:57657087-57657106 | Msa0031080:CDS | 35.0% | |
| !! | ATCAATGAATCTTGACTTGG+TGG | + | chr1_1:57657259-57657278 | None:intergenic | 35.0% |
| TACTTCACAAGTGGAGAAAA+TGG | - | chr1_1:57657382-57657401 | Msa0031080:intron | 35.0% | |
| CATATATCTGTTGGAGGAAT+TGG | - | chr1_1:57657430-57657449 | Msa0031080:intron | 35.0% | |
| AATGTTGATGCTGAAGCTAA+TGG | - | chr1_1:57657454-57657473 | Msa0031080:intron | 35.0% | |
| TGAGGTGAATTTGATGAAGA+AGG | + | chr1_1:57657547-57657566 | None:intergenic | 35.0% | |
| !! | GTTGTTATGACTGGCCATTT+TGG | + | chr1_1:57656929-57656948 | None:intergenic | 40.0% |
| AAATGGCCAGTCATAACAAC+TGG | - | chr1_1:57656929-57656948 | Msa0031080:three_prime_UTR | 40.0% | |
| CAAGAACCAGTTGTTATGAC+TGG | + | chr1_1:57656938-57656957 | None:intergenic | 40.0% | |
| ! | CAGTCATAACAACTGGTTCT+TGG | - | chr1_1:57656936-57656955 | Msa0031080:three_prime_UTR | 40.0% |
| GGTAGCAAAACACTTTGGTT+TGG | + | chr1_1:57656993-57657012 | None:intergenic | 40.0% | |
| GTTGGAGATCTAAATGCTTG+GGG | - | chr1_1:57657021-57657040 | Msa0031080:CDS | 40.0% | |
| !! | ATAGACTTGTGGATTTGCTG+AGG | + | chr1_1:57657055-57657074 | None:intergenic | 40.0% |
| GACCATTTAGCATAGACTTG+TGG | + | chr1_1:57657066-57657085 | None:intergenic | 40.0% | |
| CTTACAAAGTGAGTCTCCAA+GGG | + | chr1_1:57657106-57657125 | None:intergenic | 40.0% | |
| ACTTACAAAGTGAGTCTCCA+AGG | + | chr1_1:57657107-57657126 | None:intergenic | 40.0% | |
| GGTGATTTCTACTTCACAAG+TGG | - | chr1_1:57657373-57657392 | Msa0031080:intron | 40.0% | |
| CCAAACACTGTTTGTGAAGA+GGG | + | chr1_1:57657508-57657527 | None:intergenic | 40.0% | |
| TCCAAACACTGTTTGTGAAG+AGG | + | chr1_1:57657509-57657528 | None:intergenic | 40.0% | |
| TTTGATGAAGAAGGAGCTAC+TGG | + | chr1_1:57657538-57657557 | None:intergenic | 40.0% | |
| !! | GTTGTTATGACTGGCCATTT+TGG | + | chr1_1:57656929-57656948 | None:intergenic | 40.0% |
| AAATGGCCAGTCATAACAAC+TGG | - | chr1_1:57656929-57656948 | Msa0031080:three_prime_UTR | 40.0% | |
| CAAGAACCAGTTGTTATGAC+TGG | + | chr1_1:57656938-57656957 | None:intergenic | 40.0% | |
| ! | CAGTCATAACAACTGGTTCT+TGG | - | chr1_1:57656936-57656955 | Msa0031080:three_prime_UTR | 40.0% |
| GGTAGCAAAACACTTTGGTT+TGG | + | chr1_1:57656993-57657012 | None:intergenic | 40.0% | |
| GTTGGAGATCTAAATGCTTG+GGG | - | chr1_1:57657021-57657040 | Msa0031080:CDS | 40.0% | |
| !! | ATAGACTTGTGGATTTGCTG+AGG | + | chr1_1:57657055-57657074 | None:intergenic | 40.0% |
| GACCATTTAGCATAGACTTG+TGG | + | chr1_1:57657066-57657085 | None:intergenic | 40.0% | |
| CTTACAAAGTGAGTCTCCAA+GGG | + | chr1_1:57657106-57657125 | None:intergenic | 40.0% | |
| ACTTACAAAGTGAGTCTCCA+AGG | + | chr1_1:57657107-57657126 | None:intergenic | 40.0% | |
| GGTGATTTCTACTTCACAAG+TGG | - | chr1_1:57657373-57657392 | Msa0031080:intron | 40.0% | |
| CCAAACACTGTTTGTGAAGA+GGG | + | chr1_1:57657508-57657527 | None:intergenic | 40.0% | |
| TCCAAACACTGTTTGTGAAG+AGG | + | chr1_1:57657509-57657528 | None:intergenic | 40.0% | |
| TTTGATGAAGAAGGAGCTAC+TGG | + | chr1_1:57657538-57657557 | None:intergenic | 40.0% | |
| ! | TGGCTTGCAAATCTGACGAT+TGG | + | chr1_1:57656858-57656877 | None:intergenic | 45.0% |
| ! | AGATTTAGGACCCTGCAATG+AGG | + | chr1_1:57656890-57656909 | None:intergenic | 45.0% |
| !! | ACTTGTGGATTTGCTGAGGT+GGG | + | chr1_1:57657051-57657070 | None:intergenic | 45.0% |
| GATGCAGGCAATGAAGAACT+TGG | + | chr1_1:57657481-57657500 | None:intergenic | 45.0% | |
| CCCTCTTCACAAACAGTGTT+TGG | - | chr1_1:57657505-57657524 | Msa0031080:intron | 45.0% | |
| ! | TGGCTTGCAAATCTGACGAT+TGG | + | chr1_1:57656858-57656877 | None:intergenic | 45.0% |
| ! | AGATTTAGGACCCTGCAATG+AGG | + | chr1_1:57656890-57656909 | None:intergenic | 45.0% |
| !! | ACTTGTGGATTTGCTGAGGT+GGG | + | chr1_1:57657051-57657070 | None:intergenic | 45.0% |
| GATGCAGGCAATGAAGAACT+TGG | + | chr1_1:57657481-57657500 | None:intergenic | 45.0% | |
| CCCTCTTCACAAACAGTGTT+TGG | - | chr1_1:57657505-57657524 | Msa0031080:intron | 45.0% | |
| !! | GACTTGTGGATTTGCTGAGG+TGG | + | chr1_1:57657052-57657071 | None:intergenic | 50.0% |
| !! | GACTTGTGGATTTGCTGAGG+TGG | + | chr1_1:57657052-57657071 | None:intergenic | 50.0% |
| ! | TGTGAAGAGGGTGCAGATGC+AGG | + | chr1_1:57657496-57657515 | None:intergenic | 55.0% |
| ! | TGTGAAGAGGGTGCAGATGC+AGG | + | chr1_1:57657496-57657515 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 57656761 | 57657868 | 57656761 | ID=Msa0031080;Name=Msa0031080 |
| chr1_1 | mRNA | 57656761 | 57657868 | 57656761 | ID=Msa0031080-mRNA-1;Parent=Msa0031080;Name=Msa0031080-mRNA-1;_AED=0.00;_eAED=0.00;_QI=170|1|1|1|1|1|2|232|193 |
| chr1_1 | exon | 57656761 | 57657384 | 57656761 | ID=Msa0031080-mRNA-1:exon:17433;Parent=Msa0031080-mRNA-1 |
| chr1_1 | exon | 57657509 | 57657868 | 57657509 | ID=Msa0031080-mRNA-1:exon:17432;Parent=Msa0031080-mRNA-1 |
| chr1_1 | five_prime_UTR | 57657699 | 57657868 | 57657699 | ID=Msa0031080-mRNA-1:five_prime_utr;Parent=Msa0031080-mRNA-1 |
| chr1_1 | CDS | 57657509 | 57657698 | 57657509 | ID=Msa0031080-mRNA-1:cds;Parent=Msa0031080-mRNA-1 |
| chr1_1 | CDS | 57656993 | 57657384 | 57656993 | ID=Msa0031080-mRNA-1:cds;Parent=Msa0031080-mRNA-1 |
| chr1_1 | three_prime_UTR | 57656761 | 57656992 | 57656761 | ID=Msa0031080-mRNA-1:three_prime_utr;Parent=Msa0031080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
