Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700120 | XP_013446515.1 | 97.156 | 668 | 19 | 0 | 1 | 668 | 1 | 668 | 0.0 | 1325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700120 | sp|O76094|SRP72_HUMAN | 31.098 | 656 | 422 | 13 | 21 | 660 | 14 | 655 | 2.18e-83 | 279 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700120 | A0A072TSZ4 | 97.156 | 668 | 19 | 0 | 1 | 668 | 1 | 668 | 0.0 | 1325 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021290 | Msa0700120 | 0.839167 | 1.862658e-57 | -8.615850e-47 |
| Msa0021320 | Msa0700120 | 0.836996 | 6.743527e-57 | -8.615850e-47 |
| Msa0035730 | Msa0700120 | 0.813597 | 2.362058e-51 | -8.615850e-47 |
| Msa0073210 | Msa0700120 | 0.811726 | 6.060180e-51 | -8.615850e-47 |
| Msa0656320 | Msa0700120 | 0.930007 | 3.063192e-93 | -8.615850e-47 |
| Msa0689830 | Msa0700120 | 0.826550 | 2.551130e-54 | -8.615850e-47 |
| Msa0700120 | Msa0900830 | 0.811710 | 6.110814e-51 | -8.615850e-47 |
| Msa0700120 | Msa0926240 | 0.807656 | 4.544365e-50 | -8.615850e-47 |
| Msa0700120 | Msa1089220 | 0.817741 | 2.817000e-52 | -8.615850e-47 |
| Msa0700120 | Msa1124210 | 0.839206 | 1.820582e-57 | -8.615850e-47 |
| Msa0700120 | Msa1218610 | 0.808535 | 2.953140e-50 | -8.615850e-47 |
| Msa0700120 | Msa1220580 | 0.805055 | 1.605678e-49 | -8.615850e-47 |
| Msa0700120 | Msa1259160 | 0.808355 | 3.226275e-50 | -8.615850e-47 |
| Msa0700120 | Msa1299650 | 0.807964 | 3.907228e-50 | -8.615850e-47 |
| Msa0700120 | Msa1334560 | 0.806930 | 6.474690e-50 | -8.615850e-47 |
| Msa0700120 | Msa1364110 | 0.847501 | 1.111096e-59 | -8.615850e-47 |
| Msa0700120 | Msa1395050 | 0.806776 | 6.978086e-50 | -8.615850e-47 |
| Msa0700120 | Msa1396100 | 0.817686 | 2.899270e-52 | -8.615850e-47 |
| Msa0700120 | Msa1400850 | 0.806015 | 1.010046e-49 | -8.615850e-47 |
| Msa0700120 | Msa1402010 | 0.814807 | 1.276495e-51 | -8.615850e-47 |
| Msa0173250 | Msa0700120 | 0.811541 | 6.648794e-51 | -8.615850e-47 |
| Msa0192050 | Msa0700120 | 0.841926 | 3.533816e-58 | -8.615850e-47 |
| Msa0224110 | Msa0700120 | 0.801182 | 1.015821e-48 | -8.615850e-47 |
| Msa0236940 | Msa0700120 | 0.810807 | 9.593260e-51 | -8.615850e-47 |
| Msa0368640 | Msa0700120 | 0.857283 | 1.813386e-62 | -8.615850e-47 |
| Msa0389690 | Msa0700120 | 0.819720 | 1.001403e-52 | -8.615850e-47 |
| Msa0430130 | Msa0700120 | 0.818838 | 1.590119e-52 | -8.615850e-47 |
| Msa0437500 | Msa0700120 | 0.808007 | 3.826734e-50 | -8.615850e-47 |
| Msa0468660 | Msa0700120 | 0.808680 | 2.750113e-50 | -8.615850e-47 |
| Msa0474570 | Msa0700120 | 0.836434 | 9.377803e-57 | -8.615850e-47 |
| Msa0480280 | Msa0700120 | 0.848082 | 7.688446e-60 | -8.615850e-47 |
| Msa0265250 | Msa0700120 | 0.829116 | 6.163699e-55 | -8.615850e-47 |
| Msa0563090 | Msa0700120 | 0.860487 | 1.995540e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700120 | MtrunA17_Chr8g0376921 | 97.156 | 668 | 19 | 0 | 1 | 668 | 1 | 668 | 0.0 | 1325 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700120 | AT1G67680.1 | 63.222 | 658 | 216 | 6 | 1 | 642 | 1 | 648 | 0.0 | 786 |
| Msa0700120 | AT1G67650.1 | 58.860 | 649 | 245 | 6 | 1 | 642 | 1 | 634 | 0.0 | 747 |
Find 189 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTTGGGAAGCCACCTTTC+TGG | 0.144780 | 4_4:+71003044 | None:intergenic |
| AATCTCAAAACCATCAATTT+TGG | 0.164599 | 4_4:-71002697 | Msa0700120:three_prime_UTR |
| GGTGGAGGACCTGGGTTTGC+AGG | 0.208255 | 4_4:+71003071 | None:intergenic |
| GAAGTTGCCTGGTTTGATTT+TGG | 0.230604 | 4_4:+71002903 | None:intergenic |
| AGGATGGCTGGATTCATTTC+GGG | 0.250936 | 4_4:-71005107 | Msa0700120:CDS |
| GGGAAGCAATATATGCAAAT+AGG | 0.256001 | 4_4:-71004024 | Msa0700120:CDS |
| GAATGAAGCTTTGGAGTCTT+TGG | 0.268189 | 4_4:-71005305 | Msa0700120:CDS |
| GTTGAGGGTCCTCTTCATTT+AGG | 0.275251 | 4_4:-71003182 | Msa0700120:CDS |
| AGACTATCAGAAACATCTTT+TGG | 0.278470 | 4_4:+71004133 | None:intergenic |
| TCTGGATCTGGTGGAGGACC+TGG | 0.280134 | 4_4:+71003062 | None:intergenic |
| GACAGCTTGGAGCGTACTTC+TGG | 0.283282 | 4_4:-71003215 | Msa0700120:CDS |
| GGCTGCGACTGCGTCGGTTT+GGG | 0.291056 | 4_4:+71006639 | None:intergenic |
| ATCATTGATTGGCAGCTTCT+TGG | 0.293542 | 4_4:-71004262 | Msa0700120:intron |
| AAGAAGTCTAGGAAGTAATA+AGG | 0.294799 | 4_4:-71002807 | Msa0700120:exon |
| AAGGATGGCTGGATTCATTT+CGG | 0.297450 | 4_4:-71005108 | Msa0700120:CDS |
| GTCTCCTATTGCTGTACAAT+TGG | 0.300746 | 4_4:-71004374 | Msa0700120:CDS |
| AAATGATGAAACTATGCTTT+TGG | 0.305228 | 4_4:-71005269 | Msa0700120:CDS |
| AGCTCGTTTGTCCTTCCTCT+TGG | 0.312324 | 4_4:+71003001 | None:intergenic |
| GCTCAGGTTGCGGCGGCGGC+TGG | 0.317288 | 4_4:-71003626 | Msa0700120:CDS |
| TGCCCGTCTTGATGTTATTA+AGG | 0.317488 | 4_4:-71003294 | Msa0700120:CDS |
| CTTTCCTTCGTCGTTCGTTT+CGG | 0.317730 | 4_4:+71003154 | None:intergenic |
| TTGAATTGAACCAAAATTGA+TGG | 0.318140 | 4_4:+71002687 | None:intergenic |
| GGAAGCCACCTTTCTGGATC+TGG | 0.323233 | 4_4:+71003050 | None:intergenic |
| GACTGCGTCGGTTTGGGCTT+CGG | 0.340662 | 4_4:+71006645 | None:intergenic |
| CCCAGGTTCTTTACTTAGCC+AGG | 0.341545 | 4_4:-71003649 | Msa0700120:CDS |
| TCATTGATTGGCAGCTTCTT+GGG | 0.354425 | 4_4:-71004261 | Msa0700120:intron |
| AGCAACAAGCAGCTTTGAAT+TGG | 0.358344 | 4_4:-71005080 | Msa0700120:CDS |
| CAGGGCTCAGGTTGCGGCGG+CGG | 0.362726 | 4_4:-71003630 | Msa0700120:CDS |
| CTTCAATCGTTTCGCATAAA+CGG | 0.366013 | 4_4:+71006735 | None:intergenic |
| AATTTCCAACATATCAATCT+TGG | 0.370710 | 4_4:+71005177 | None:intergenic |
| AGGCTGCGACTGCGTCGGTT+TGG | 0.372921 | 4_4:+71006638 | None:intergenic |
| GTTTGGGCTTCGGAGCCATT+AGG | 0.374566 | 4_4:+71006655 | None:intergenic |
| GAAATACTGGCACAGTTTGC+TGG | 0.375065 | 4_4:-71003689 | Msa0700120:CDS |
| AAACAAGTTGAATGAAGCTT+TGG | 0.382642 | 4_4:-71005314 | Msa0700120:CDS |
| ATTGAACTCGCATAGTGTAT+AGG | 0.382811 | 4_4:+71002717 | None:intergenic |
| TTCTGTTGCTGCCTTAGTTA+TGG | 0.385921 | 4_4:-71005152 | Msa0700120:CDS |
| GCCGGCATGTGTTGAATATC+TGG | 0.386185 | 4_4:+71003566 | None:intergenic |
| TTTGCAGGGTTAAACCCTTT+AGG | 0.386343 | 4_4:+71003086 | None:intergenic |
| TCGATTTGGTGATGCTGTTT+CGG | 0.392201 | 4_4:-71006363 | Msa0700120:CDS |
| AATACTGGTACAACACTATC+AGG | 0.392818 | 4_4:+71003761 | None:intergenic |
| CTTAGCCAGGGCTCAGGTTG+CGG | 0.398955 | 4_4:-71003636 | Msa0700120:CDS |
| AGGGCAGCTTGCAGCAATAC+TGG | 0.399705 | 4_4:+71003746 | None:intergenic |
| CTGGATCTGGTGGAGGACCT+GGG | 0.400436 | 4_4:+71003063 | None:intergenic |
| TAGCCCAATTGTACAGCAAT+AGG | 0.402117 | 4_4:+71004370 | None:intergenic |
| TTTCCACAGCTGAAACCTAA+TGG | 0.402997 | 4_4:-71006670 | Msa0700120:exon |
| GCTCGTTTGTCCTTCCTCTT+GGG | 0.405630 | 4_4:+71003002 | None:intergenic |
| GAATGAGTATATTTGTCTAT+TGG | 0.407486 | 4_4:-71002662 | Msa0700120:three_prime_UTR |
| AAAGACCTTGCCTGGATTGA+AGG | 0.409184 | 4_4:-71003249 | Msa0700120:CDS |
| CCTAGACTTCTTTCTAGACT+TGG | 0.410339 | 4_4:+71002818 | None:intergenic |
| AAACGAGCTGCTCAAGTTAG+AGG | 0.410977 | 4_4:-71002987 | Msa0700120:CDS |
| GGAAGCAATATATGCAAATA+GGG | 0.413110 | 4_4:-71004023 | Msa0700120:CDS |
| GTTGCTGCCTTAGTTATGGC+AGG | 0.413143 | 4_4:-71005148 | Msa0700120:CDS |
| TTGAACTCGCATAGTGTATA+GGG | 0.415210 | 4_4:+71002718 | None:intergenic |
| TGAAACTTTCAGCAAAAGAA+AGG | 0.416899 | 4_4:-71004045 | Msa0700120:CDS |
| ATCTGTAAGTTTAACGGCAT+TGG | 0.418962 | 4_4:+71006548 | None:intergenic |
| GAAGCTTCTGGTAGATATCC+AGG | 0.423941 | 4_4:+71005206 | None:intergenic |
| CGCCGCCGCAACCTGAGCCC+TGG | 0.424323 | 4_4:+71003631 | None:intergenic |
| TGCACTCTGAGTAGCACCTT+TGG | 0.425319 | 4_4:+71002878 | None:intergenic |
| TGGAAGGGCTGAGGAAATAC+TGG | 0.426397 | 4_4:-71003702 | Msa0700120:CDS |
| GGACATGATTAAACGAGATA+TGG | 0.428299 | 4_4:-71004209 | Msa0700120:CDS |
| TCTCCTATTGCTGTACAATT+GGG | 0.428740 | 4_4:-71004373 | Msa0700120:CDS |
| AAAGTCCAAGATTGATATGT+TGG | 0.431327 | 4_4:-71005182 | Msa0700120:CDS |
| AGAGCCTGATGGAAGATAAC+TGG | 0.433802 | 4_4:-71004423 | Msa0700120:CDS |
| ATTGCTGCAAGCTGCCCTCT+TGG | 0.433939 | 4_4:-71003741 | Msa0700120:CDS |
| TGAGGAGCTCGTTAAAAGTC+AGG | 0.440388 | 4_4:-71003354 | Msa0700120:CDS |
| CACCTTTGGAGGAAGTTGCC+TGG | 0.447513 | 4_4:+71002892 | None:intergenic |
| TGGTATCTTTGTTAGAGAAT+CGG | 0.447976 | 4_4:+71003586 | None:intergenic |
| CTGCTTGTTCTTTAATTCAA+AGG | 0.451905 | 4_4:-71005048 | Msa0700120:CDS |
| ACTCTGATCTGTAAGTTTAA+CGG | 0.452703 | 4_4:+71006542 | None:intergenic |
| CAAAGCTTTCGCCTAGCTCA+TGG | 0.456121 | 4_4:-71004076 | Msa0700120:CDS |
| TGCTGTAGTTAGAGATAAGC+AGG | 0.456566 | 4_4:-71002955 | Msa0700120:CDS |
| CAAGTGTTAATGTGCGTGTT+TGG | 0.457889 | 4_4:-71002636 | Msa0700120:three_prime_UTR |
| AGGCTGCCTCATTCAAGTTA+AGG | 0.458642 | 4_4:-71003409 | Msa0700120:CDS |
| GTGGAGGACCTGGGTTTGCA+GGG | 0.460700 | 4_4:+71003072 | None:intergenic |
| TCTAGACTTGGATGAAGGCT+TGG | 0.461224 | 4_4:+71002830 | None:intergenic |
| TTGATCAAAGATGATCGATT+TGG | 0.465225 | 4_4:-71006377 | Msa0700120:CDS |
| AAAAGTTGACCTCTCTCGCT+TGG | 0.466137 | 4_4:+71003028 | None:intergenic |
| TTCTTTCTAGACTTGGATGA+AGG | 0.466315 | 4_4:+71002825 | None:intergenic |
| AATAATCTTGTTTCCCTGAA+AGG | 0.467300 | 4_4:-71004157 | Msa0700120:CDS |
| AAGAAACTAAAGACCTTGCC+TGG | 0.467453 | 4_4:-71003257 | Msa0700120:CDS |
| ATCTGAAGTTCAAGGATGGC+TGG | 0.467862 | 4_4:-71005119 | Msa0700120:CDS |
| TTGGATGAAGGCTTGGATGA+AGG | 0.468551 | 4_4:+71002837 | None:intergenic |
| CTTTCGCCTAGCTCATGGAT+TGG | 0.471476 | 4_4:-71004071 | Msa0700120:CDS |
| ATTGTTCTAACTGCTTAATG+AGG | 0.476672 | 4_4:+71002559 | None:intergenic |
| TGCTCAAGTTAGAGGCTCAC+AGG | 0.477514 | 4_4:-71002979 | Msa0700120:CDS |
| GAAAGCCAAGGTATCCTAAA+GGG | 0.478236 | 4_4:-71003100 | Msa0700120:CDS |
| TAAAGAACCTGGGACTTCTC+AGG | 0.480535 | 4_4:+71003659 | None:intergenic |
| ACAATTGGGCTATGTCCAAC+AGG | 0.482796 | 4_4:-71004359 | Msa0700120:intron |
| CGGAGTGCGTCTTCATCGCC+AGG | 0.485851 | 4_4:+71006416 | None:intergenic |
| GAAGCATAGAAGCGCTAGTT+GGG | 0.486962 | 4_4:-71003331 | Msa0700120:CDS |
| TCTTTACTTAGCCAGGGCTC+AGG | 0.490874 | 4_4:-71003642 | Msa0700120:CDS |
| CAGGCCAGTTATCTTCCATC+AGG | 0.491778 | 4_4:+71004419 | None:intergenic |
| AAAGTTGACCTCTCTCGCTT+GGG | 0.493251 | 4_4:+71003029 | None:intergenic |
| AGCCACCTTTCTGGATCTGG+TGG | 0.495160 | 4_4:+71003053 | None:intergenic |
| TCTGGAGTTAAACAAGTTGA+GGG | 0.499079 | 4_4:-71003197 | Msa0700120:CDS |
| GAAACTTTCAGCAAAAGAAA+GGG | 0.499900 | 4_4:-71004044 | Msa0700120:CDS |
| TCTTCGAGTGGAGGTGGAGC+GGG | 0.502009 | 4_4:+71006615 | None:intergenic |
| TGAAGGCTTGGATGAAGGCT+TGG | 0.502378 | 4_4:+71002842 | None:intergenic |
| TTCTGGAGTTAAACAAGTTG+AGG | 0.502597 | 4_4:-71003198 | Msa0700120:CDS |
| CCAAGTCTAGAAAGAAGTCT+AGG | 0.505506 | 4_4:-71002818 | Msa0700120:CDS |
| CTCAGCAACAACCACTGTTA+CGG | 0.506217 | 4_4:-71006706 | Msa0700120:five_prime_UTR |
| TTAAACCCTTTAGGATACCT+TGG | 0.508195 | 4_4:+71003095 | None:intergenic |
| CACCTTTCTGGATCTGGTGG+AGG | 0.508999 | 4_4:+71003056 | None:intergenic |
| TGATCTCCCTGCCATAACTA+AGG | 0.509736 | 4_4:+71005141 | None:intergenic |
| TTGCTGCTTTCAATTACTGA+GGG | 0.509780 | 4_4:-71002742 | Msa0700120:three_prime_UTR |
| CGTAACAGTGGTTGTTGCTG+AGG | 0.511235 | 4_4:+71006707 | None:intergenic |
| AGATGCTATTGAAGCTTATG+TGG | 0.514106 | 4_4:-71004230 | Msa0700120:CDS |
| CATTGGTGAATGCGGAAGCT+TGG | 0.514363 | 4_4:+71006565 | None:intergenic |
| AATAGATCTTCGAGTGGAGG+TGG | 0.517073 | 4_4:+71006609 | None:intergenic |
| GGGAATTGATGTGGACAGCT+TGG | 0.519634 | 4_4:-71003228 | Msa0700120:CDS |
| ACACTATCAGGAAACATGTC+TGG | 0.519719 | 4_4:+71003773 | None:intergenic |
| CCAGGTTCTTTACTTAGCCA+GGG | 0.523348 | 4_4:-71003648 | Msa0700120:CDS |
| GGAAGCATAGAAGCGCTAGT+TGG | 0.523436 | 4_4:-71003332 | Msa0700120:CDS |
| ACAAGGGTGGCAACAGTAGC+CGG | 0.524474 | 4_4:+71003548 | None:intergenic |
| AGAGAATCGGCTGCAATATG+TGG | 0.533632 | 4_4:+71003599 | None:intergenic |
| AGCTGCATCCTCAACGTCGT+TGG | 0.536194 | 4_4:+71003508 | None:intergenic |
| AGAAAGCCAAGGTATCCTAA+AGG | 0.536400 | 4_4:-71003101 | Msa0700120:CDS |
| TTGGATGTGTTTGTTGAGAG+TGG | 0.536512 | 4_4:+71006584 | None:intergenic |
| ACATCAATTCCCTTCAATCC+AGG | 0.536875 | 4_4:+71003239 | None:intergenic |
| TCCATGCCTTAACTTGAATG+AGG | 0.536971 | 4_4:+71003403 | None:intergenic |
| GTTAGAGATAAGCAGGAAGC+TGG | 0.537836 | 4_4:-71002948 | Msa0700120:CDS |
| TTGGTTAGAGAGAACAAAGC+TGG | 0.538133 | 4_4:-71003722 | Msa0700120:CDS |
| CATTCAAGTTAAGGCATGGA+AGG | 0.544217 | 4_4:-71003400 | Msa0700120:CDS |
| CCCTGGCTAAGTAAAGAACC+TGG | 0.544789 | 4_4:+71003648 | None:intergenic |
| GCATGCTGCTAAACTCTATG+AGG | 0.544889 | 4_4:-71003372 | Msa0700120:CDS |
| AACTGCAATGGACGATTCAT+CGG | 0.545482 | 4_4:+71004186 | None:intergenic |
| AGCTCTTGTTGTCCGCCCGA+AGG | 0.549212 | 4_4:-71005003 | Msa0700120:intron |
| TTGCTGCCTTAGTTATGGCA+GGG | 0.553077 | 4_4:-71005147 | Msa0700120:CDS |
| GCGGGAGGCTGCGACTGCGT+CGG | 0.553576 | 4_4:+71006633 | None:intergenic |
| GCCTCATTCAAGTTAAGGCA+TGG | 0.556079 | 4_4:-71003404 | Msa0700120:CDS |
| AAGACCTTGCCTGGATTGAA+GGG | 0.556211 | 4_4:-71003248 | Msa0700120:CDS |
| TTGTTCTAACTGCTTAATGA+GGG | 0.556776 | 4_4:+71002560 | None:intergenic |
| GTTGCTGCTTTCAATTACTG+AGG | 0.557540 | 4_4:-71002743 | Msa0700120:three_prime_UTR |
| GTAACAGTGGTTGTTGCTGA+GGG | 0.557553 | 4_4:+71006708 | None:intergenic |
| GCAGTTCTCGCAATTGCACC+TGG | 0.562226 | 4_4:-71006434 | Msa0700120:intron |
| ACTCTGAGTAGCACCTTTGG+AGG | 0.562248 | 4_4:+71002881 | None:intergenic |
| TCAAGTCCAATCCATGAGCT+AGG | 0.562856 | 4_4:+71004065 | None:intergenic |
| GAACAAAGCTGGAAGGGCTG+AGG | 0.564078 | 4_4:-71003711 | Msa0700120:CDS |
| TGCCTTAATAACATCAAGAC+GGG | 0.570587 | 4_4:+71003292 | None:intergenic |
| TCGAGTGGAGGTGGAGCGGG+AGG | 0.571792 | 4_4:+71006618 | None:intergenic |
| ATTATTGACTGCAACTGCAA+TGG | 0.572155 | 4_4:+71004174 | None:intergenic |
| ATAGTCTGAAGAAACTTGAT+CGG | 0.576762 | 4_4:-71004117 | Msa0700120:CDS |
| GTCCTCCACCAGATCCAGAA+AGG | 0.583333 | 4_4:-71003058 | Msa0700120:CDS |
| GGGAGATCATCTGAAGTTCA+AGG | 0.584389 | 4_4:-71005127 | Msa0700120:CDS |
| GCTTAATATTATAATGCAAG+AGG | 0.584885 | 4_4:-71003429 | Msa0700120:CDS |
| ATCTTCTCGATCTCCTCCTG+AGG | 0.585127 | 4_4:-71006333 | Msa0700120:CDS |
| AGAACGAGCCAACGACGTTG+AGG | 0.585395 | 4_4:-71003516 | Msa0700120:CDS |
| GGTGGCTTCCCAAGCGAGAG+AGG | 0.586065 | 4_4:-71003037 | Msa0700120:CDS |
| TAGAGAGAACAAAGCTGGAA+GGG | 0.591318 | 4_4:-71003717 | Msa0700120:CDS |
| TTGATTCTGCAACCAAGTGG+TGG | 0.591734 | 4_4:-71003478 | Msa0700120:CDS |
| ATCTTCGAGTGGAGGTGGAG+CGG | 0.593310 | 4_4:+71006614 | None:intergenic |
| ACCAGATATTCAACACATGC+CGG | 0.597220 | 4_4:-71003567 | Msa0700120:CDS |
| AAAGTTGCCTGAGAAGTCCC+AGG | 0.599008 | 4_4:-71003666 | Msa0700120:CDS |
| TTTAACGGCATTGGTGAATG+CGG | 0.600801 | 4_4:+71006557 | None:intergenic |
| GAGCCATTAGGTTTCAGCTG+TGG | 0.603914 | 4_4:+71006667 | None:intergenic |
| AGCCAGGGCTCAGGTTGCGG+CGG | 0.605720 | 4_4:-71003633 | Msa0700120:CDS |
| GGGTTTAACCCTGCAAACCC+AGG | 0.606815 | 4_4:-71003080 | Msa0700120:CDS |
| AACCAGGCAACTTCCTCCAA+AGG | 0.608012 | 4_4:-71002894 | Msa0700120:CDS |
| TTAGAGAGAACAAAGCTGGA+AGG | 0.608924 | 4_4:-71003718 | Msa0700120:CDS |
| TCATGCTAACAGGATTGACC+AGG | 0.612401 | 4_4:-71003987 | Msa0700120:intron |
| CTGCCTTAATAACATCAAGA+CGG | 0.615547 | 4_4:+71003291 | None:intergenic |
| GAGAATCGGCTGCAATATGT+GGG | 0.621190 | 4_4:+71003600 | None:intergenic |
| AGAATAGAGAAACGCCGAAG+TGG | 0.621395 | 4_4:+71006759 | None:intergenic |
| CATAGCATTAGACCACCACT+TGG | 0.621895 | 4_4:+71003466 | None:intergenic |
| AAACCACATATCTTCCACTT+CGG | 0.622492 | 4_4:-71006773 | None:intergenic |
| AATTGGTCAAGAGAGCCTGA+TGG | 0.624372 | 4_4:-71004434 | Msa0700120:CDS |
| AAAAGAGAAAGAGAAAGCCA+AGG | 0.626179 | 4_4:-71003112 | Msa0700120:CDS |
| TTTGTTCTCTCTAACCAAGA+GGG | 0.627104 | 4_4:+71003727 | None:intergenic |
| TGTTCTAACTGCTTAATGAG+GGG | 0.627140 | 4_4:+71002561 | None:intergenic |
| TGCTTGATTCTGCAACCAAG+TGG | 0.627939 | 4_4:-71003481 | Msa0700120:CDS |
| GATCATCTGAAGTTCAAGGA+TGG | 0.631439 | 4_4:-71005123 | Msa0700120:CDS |
| TTCCAATCCAAAATCAAACC+AGG | 0.634307 | 4_4:-71002910 | Msa0700120:CDS |
| TGGATTGAAGGGAATTGATG+TGG | 0.636123 | 4_4:-71003237 | Msa0700120:CDS |
| ATTCAAGTTAAGGCATGGAA+GGG | 0.638452 | 4_4:-71003399 | Msa0700120:CDS |
| TCGGCAACACCTAAATGAAG+AGG | 0.639614 | 4_4:+71003173 | None:intergenic |
| GCTCAAGTTAGAGGCTCACA+GGG | 0.642165 | 4_4:-71002978 | Msa0700120:CDS |
| GAGGAGCTCGTTAAAAGTCA+GGG | 0.645289 | 4_4:-71003353 | Msa0700120:CDS |
| GTGAATAGATCTTCGAGTGG+AGG | 0.646165 | 4_4:+71006606 | None:intergenic |
| CCTGGCTAAGTAAAGAACCT+GGG | 0.646230 | 4_4:+71003649 | None:intergenic |
| AATTCCCTTCAATCCAGGCA+AGG | 0.648744 | 4_4:+71003244 | None:intergenic |
| CTCCACCAGATCCAGAAAGG+TGG | 0.653977 | 4_4:-71003055 | Msa0700120:CDS |
| CTTTGTTCTCTCTAACCAAG+AGG | 0.654169 | 4_4:+71003726 | None:intergenic |
| AATCAGTATCACCGTAACAG+TGG | 0.667307 | 4_4:+71006695 | None:intergenic |
| GTGGTCTAATGCTATGACTG+AGG | 0.668030 | 4_4:-71003459 | Msa0700120:CDS |
| TCAACGCAACGATCTTGCAT+CGG | 0.668802 | 4_4:+71006396 | None:intergenic |
| AATCGGCTGCAATATGTGGG+TGG | 0.683879 | 4_4:+71003603 | None:intergenic |
| GTGGTGAATAGATCTTCGAG+TGG | 0.684779 | 4_4:+71006603 | None:intergenic |
| GTTGCCGAAACGAACGACGA+AGG | 0.686534 | 4_4:-71003158 | Msa0700120:CDS |
| AATATCACATCACCTTCGGG+CGG | 0.714098 | 4_4:+71004991 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATTATTATTAATTATA+TGG | - | chr4_4:71005495-71005514 | Msa0700120:intron | 0.0% |
| !! | TTGCTTATTATATTTATATA+AGG | - | chr4_4:71003146-71003165 | Msa0700120:CDS | 10.0% |
| !! | ATATAAATCATTTGTATATA+CGG | - | chr4_4:71003708-71003727 | Msa0700120:CDS | 10.0% |
| !! | AAATAAATTTATGACTTAAT+AGG | + | chr4_4:71004824-71004843 | None:intergenic | 10.0% |
| !! | ATCAATGAATTGAAATTAAA+AGG | + | chr4_4:71002837-71002856 | None:intergenic | 15.0% |
| !!! | AATTTAAAAGTTTTAACCAA+CGG | - | chr4_4:71003238-71003257 | Msa0700120:CDS | 15.0% |
| !! | AATGGTTAATATTATAAACA+TGG | + | chr4_4:71003769-71003788 | None:intergenic | 15.0% |
| !! | ATATTATATATGTACATACA+GGG | + | chr4_4:71003873-71003892 | None:intergenic | 15.0% |
| !!! | TTACTTTGTTGTTTTTAAAT+AGG | - | chr4_4:71003977-71003996 | Msa0700120:intron | 15.0% |
| !!! | AAAATATCTGAAGTAAATTT+GGG | + | chr4_4:71004392-71004411 | None:intergenic | 15.0% |
| !!! | TATATTTTTTCTATCAGAAT+TGG | - | chr4_4:71004882-71004901 | Msa0700120:intron | 15.0% |
| !! | TTAAAAAAATGAAAATCCTC+AGG | + | chr4_4:71003019-71003038 | None:intergenic | 20.0% |
| !!! | TGAGGATTTTCATTTTTTTA+AGG | - | chr4_4:71003018-71003037 | Msa0700120:CDS | 20.0% |
| !! | AATATAGTTTATGACAAAAC+AGG | + | chr4_4:71003281-71003300 | None:intergenic | 20.0% |
| !! | TTATTCATCGAATTATGAAA+TGG | - | chr4_4:71003436-71003455 | Msa0700120:CDS | 20.0% |
| !!! | ACAATGTAACATTTTTTACA+CGG | + | chr4_4:71003557-71003576 | None:intergenic | 20.0% |
| !! | CATATTATATATGTACATAC+AGG | + | chr4_4:71003874-71003893 | None:intergenic | 20.0% |
| !! | ACAAAGTAAAAAATAATCGT+TGG | + | chr4_4:71003966-71003985 | None:intergenic | 20.0% |
| !!! | GAAAATATCTGAAGTAAATT+TGG | + | chr4_4:71004393-71004412 | None:intergenic | 20.0% |
| !!! | ATTTACTTCAGATATTTTCA+TGG | - | chr4_4:71004394-71004413 | Msa0700120:CDS | 20.0% |
| !!! | TTTACTTCAGATATTTTCAT+GGG | - | chr4_4:71004395-71004414 | Msa0700120:CDS | 20.0% |
| !! | ATTGAATATTTGAATAGTGT+TGG | + | chr4_4:71004465-71004484 | None:intergenic | 20.0% |
| !! | TAAGTCATAAATTTATTTCC+TGG | - | chr4_4:71004826-71004845 | Msa0700120:intron | 20.0% |
| !! | AAGTCATAAATTTATTTCCT+GGG | - | chr4_4:71004827-71004846 | Msa0700120:intron | 20.0% |
| !!! | AGTTTTAATCAATCATTGAT+TGG | - | chr4_4:71005060-71005079 | Msa0700120:CDS | 20.0% |
| !!! | AAGCTCTAAAATAAGTCAAT+CGG | + | chr4_4:71003178-71003197 | None:intergenic | 25.0% |
| !! | CAAAATAAGCCTTATACAAA+CGG | - | chr4_4:71003362-71003381 | Msa0700120:CDS | 25.0% |
| !! | AAATGATGAAACTATGCTTT+TGG | - | chr4_4:71004064-71004083 | Msa0700120:CDS | 25.0% |
| ! | AATTTCCAACATATCAATCT+TGG | + | chr4_4:71004159-71004178 | None:intergenic | 25.0% |
| !!! | TGATGTGATATTTTGATTGT+GGG | - | chr4_4:71004353-71004372 | Msa0700120:intron | 25.0% |
| ! | AAGTTCCTTATTGTAAAACA+TGG | - | chr4_4:71004732-71004751 | Msa0700120:intron | 25.0% |
| !! | TTTGTCCATGTTTTACAATA+AGG | + | chr4_4:71004740-71004759 | None:intergenic | 25.0% |
| !! | TACAATCAAATGTTGTTTGT+CGG | - | chr4_4:71004771-71004790 | Msa0700120:intron | 25.0% |
| ! | GACTTAATAGGTTAACTAAT+TGG | + | chr4_4:71004812-71004831 | None:intergenic | 25.0% |
| !! | TCATTTTCTATATCTTCATC+AGG | + | chr4_4:71004936-71004955 | None:intergenic | 25.0% |
| ! | GATATATGACTGATGATTTA+AGG | + | chr4_4:71005392-71005411 | None:intergenic | 25.0% |
| ! | GCTTAATATTATAATGCAAG+AGG | - | chr4_4:71005904-71005923 | Msa0700120:intron | 25.0% |
| !! | AATCTCAAAACCATCAATTT+TGG | - | chr4_4:71006636-71006655 | Msa0700120:CDS | 25.0% |
| ! | TTGAATTGAACCAAAATTGA+TGG | + | chr4_4:71006649-71006668 | None:intergenic | 25.0% |
| ! | GAATGAGTATATTTGTCTAT+TGG | - | chr4_4:71006671-71006690 | Msa0700120:exon | 25.0% |
| ACTCTGATCTGTAAGTTTAA+CGG | + | chr4_4:71002794-71002813 | None:intergenic | 30.0% | |
| TTGATCAAAGATGATCGATT+TGG | - | chr4_4:71002956-71002975 | Msa0700120:CDS | 30.0% | |
| AAAAAATGAAAATCCTCAGG+AGG | + | chr4_4:71003016-71003035 | None:intergenic | 30.0% | |
| TGAAATTCAGAATTAGAGCT+AGG | - | chr4_4:71003088-71003107 | Msa0700120:CDS | 30.0% | |
| TAAAATAAGTCAATCGGAAC+GGG | + | chr4_4:71003172-71003191 | None:intergenic | 30.0% | |
| CTAAAATAAGTCAATCGGAA+CGG | + | chr4_4:71003173-71003192 | None:intergenic | 30.0% | |
| TATGAAGATACAATTTCCGT+TGG | + | chr4_4:71003257-71003276 | None:intergenic | 30.0% | |
| ! | GAATTATGAAATGGAAGCAT+GGG | - | chr4_4:71003445-71003464 | Msa0700120:CDS | 30.0% |
| ! | AATTATGAAATGGAAGCATG+GGG | - | chr4_4:71003446-71003465 | Msa0700120:CDS | 30.0% |
| GAACTCTAGTAGTAGATATT+AGG | - | chr4_4:71003481-71003500 | Msa0700120:CDS | 30.0% | |
| ACAAAATTAGTTCATGCACA+TGG | + | chr4_4:71003508-71003527 | None:intergenic | 30.0% | |
| ATCATTTGTATATACGGAAG+TGG | - | chr4_4:71003714-71003733 | Msa0700120:CDS | 30.0% | |
| GTGTTAAAAAATAGACATCG+AGG | + | chr4_4:71003796-71003815 | None:intergenic | 30.0% | |
| !! | AATTTTGGTCATGCATCTTT+TGG | + | chr4_4:71003831-71003850 | None:intergenic | 30.0% |
| CATGTCATAGAAAACTTTGT+TGG | - | chr4_4:71003911-71003930 | Msa0700120:intron | 30.0% | |
| GAAAACTTTGTTGGAGTTTA+TGG | - | chr4_4:71003920-71003939 | Msa0700120:intron | 30.0% | |
| ! | AAACAAGTTGAATGAAGCTT+TGG | - | chr4_4:71004019-71004038 | Msa0700120:CDS | 30.0% |
| ! | TCTCAAATTTTGTATCGTCT+TGG | - | chr4_4:71004089-71004108 | Msa0700120:CDS | 30.0% |
| TTTGTATCGTCTTGGAAAAA+TGG | - | chr4_4:71004097-71004116 | Msa0700120:CDS | 30.0% | |
| AAAGTCCAAGATTGATATGT+TGG | - | chr4_4:71004151-71004170 | Msa0700120:CDS | 30.0% | |
| CTGCTTGTTCTTTAATTCAA+AGG | - | chr4_4:71004285-71004304 | Msa0700120:intron | 30.0% | |
| TCAAAATATCACATCACCTT+CGG | + | chr4_4:71004349-71004368 | None:intergenic | 30.0% | |
| !!! | GTGATGTGATATTTTGATTG+TGG | - | chr4_4:71004352-71004371 | Msa0700120:intron | 30.0% |
| TCATAAATTTATTTCCTGGG+AGG | - | chr4_4:71004830-71004849 | Msa0700120:intron | 30.0% | |
| ! | AATAATCTTGTTTCCCTGAA+AGG | - | chr4_4:71005176-71005195 | Msa0700120:CDS | 30.0% |
| ! | AGACTATCAGAAACATCTTT+TGG | + | chr4_4:71005203-71005222 | None:intergenic | 30.0% |
| ATAGTCTGAAGAAACTTGAT+CGG | - | chr4_4:71005216-71005235 | Msa0700120:CDS | 30.0% | |
| TGAAACTTTCAGCAAAAGAA+AGG | - | chr4_4:71005288-71005307 | Msa0700120:CDS | 30.0% | |
| GAAACTTTCAGCAAAAGAAA+GGG | - | chr4_4:71005289-71005308 | Msa0700120:CDS | 30.0% | |
| GGAAGCAATATATGCAAATA+GGG | - | chr4_4:71005310-71005329 | Msa0700120:CDS | 30.0% | |
| TGGTATCTTTGTTAGAGAAT+CGG | + | chr4_4:71005750-71005769 | None:intergenic | 30.0% | |
| !! | TCGTTCTTTTAAAGACACAA+GGG | + | chr4_4:71005804-71005823 | None:intergenic | 30.0% |
| AAGAAGTCTAGGAAGTAATA+AGG | - | chr4_4:71006526-71006545 | Msa0700120:intron | 30.0% | |
| CTTCAATCGTTTCGCATAAA+CGG | + | chr4_4:71002601-71002620 | None:intergenic | 35.0% | |
| ATCTGTAAGTTTAACGGCAT+TGG | + | chr4_4:71002788-71002807 | None:intergenic | 35.0% | |
| TTCAGAATTAGAGCTAGGAT+AGG | - | chr4_4:71003093-71003112 | Msa0700120:CDS | 35.0% | |
| TCAGAATTAGAGCTAGGATA+GGG | - | chr4_4:71003094-71003113 | Msa0700120:CDS | 35.0% | |
| ! | ATAAGCCTTATACAAACGGT+TGG | - | chr4_4:71003366-71003385 | Msa0700120:CDS | 35.0% |
| TTAGTCCAACCGTTTGTATA+AGG | + | chr4_4:71003374-71003393 | None:intergenic | 35.0% | |
| TACAAACGGTTGGACTAAAT+TGG | - | chr4_4:71003376-71003395 | Msa0700120:CDS | 35.0% | |
| AGAGAGAAGGTGATAGTTTA+GGG | - | chr4_4:71003399-71003418 | Msa0700120:CDS | 35.0% | |
| CGAATTATGAAATGGAAGCA+TGG | - | chr4_4:71003444-71003463 | Msa0700120:CDS | 35.0% | |
| AATAGACATCGAGGATTGAA+TGG | + | chr4_4:71003787-71003806 | None:intergenic | 35.0% | |
| TGCATGACCAAAATTGAACA+TGG | - | chr4_4:71003836-71003855 | Msa0700120:intron | 35.0% | |
| GCATGACCAAAATTGAACAT+GGG | - | chr4_4:71003837-71003856 | Msa0700120:intron | 35.0% | |
| CATGACCAAAATTGAACATG+GGG | - | chr4_4:71003838-71003857 | Msa0700120:intron | 35.0% | |
| ATGACCAAAATTGAACATGG+GGG | - | chr4_4:71003839-71003858 | Msa0700120:intron | 35.0% | |
| ! | AATTCCCCCATGTTCAATTT+TGG | + | chr4_4:71003846-71003865 | None:intergenic | 35.0% |
| CAAAATATCACATCACCTTC+GGG | + | chr4_4:71004348-71004367 | None:intergenic | 35.0% | |
| AAACACATACTCGTGAAGTT+TGG | + | chr4_4:71004589-71004608 | None:intergenic | 35.0% | |
| ! | CACGAAGCATCTATTACTAA+TGG | + | chr4_4:71004681-71004700 | None:intergenic | 35.0% |
| TCTCCTATTGCTGTACAATT+GGG | - | chr4_4:71004960-71004979 | Msa0700120:intron | 35.0% | |
| AGATGCTATTGAAGCTTATG+TGG | - | chr4_4:71005103-71005122 | Msa0700120:CDS | 35.0% | |
| GGACATGATTAAACGAGATA+TGG | - | chr4_4:71005124-71005143 | Msa0700120:CDS | 35.0% | |
| ! | ATTATTGACTGCAACTGCAA+TGG | + | chr4_4:71005162-71005181 | None:intergenic | 35.0% |
| ! | AACATCTTTTGGACCTTTCA+GGG | + | chr4_4:71005192-71005211 | None:intergenic | 35.0% |
| ! | AAACATCTTTTGGACCTTTC+AGG | + | chr4_4:71005193-71005212 | None:intergenic | 35.0% |
| GGGAAGCAATATATGCAAAT+AGG | - | chr4_4:71005309-71005328 | Msa0700120:CDS | 35.0% | |
| ! | TTTTGCTTCTTCATGCTAAC+AGG | - | chr4_4:71005336-71005355 | Msa0700120:CDS | 35.0% |
| AAGAAGACAGATAAAAGACC+TGG | + | chr4_4:71005367-71005386 | None:intergenic | 35.0% | |
| AATACTGGTACAACACTATC+AGG | + | chr4_4:71005575-71005594 | None:intergenic | 35.0% | |
| TTTGTTCTCTCTAACCAAGA+GGG | + | chr4_4:71005609-71005628 | None:intergenic | 35.0% | |
| !! | TTCTTTTAAAGACACAAGGG+TGG | + | chr4_4:71005801-71005820 | None:intergenic | 35.0% |
| !! | CTCGTTCTTTTAAAGACACA+AGG | + | chr4_4:71005805-71005824 | None:intergenic | 35.0% |
| ! | ATTCAAGTTAAGGCATGGAA+GGG | - | chr4_4:71005934-71005953 | Msa0700120:intron | 35.0% |
| TGCCTTAATAACATCAAGAC+GGG | + | chr4_4:71006044-71006063 | None:intergenic | 35.0% | |
| CTGCCTTAATAACATCAAGA+CGG | + | chr4_4:71006045-71006064 | None:intergenic | 35.0% | |
| !! | TTCTGGAGTTAAACAAGTTG+AGG | - | chr4_4:71006135-71006154 | Msa0700120:intron | 35.0% |
| ! | TCTGGAGTTAAACAAGTTGA+GGG | - | chr4_4:71006136-71006155 | Msa0700120:intron | 35.0% |
| AAAAGAGAAAGAGAAAGCCA+AGG | - | chr4_4:71006221-71006240 | Msa0700120:intron | 35.0% | |
| !! | TTAAACCCTTTAGGATACCT+TGG | + | chr4_4:71006241-71006260 | None:intergenic | 35.0% |
| !! | TGATTTTGGATTGGAATGAC+TGG | + | chr4_4:71006419-71006438 | None:intergenic | 35.0% |
| TTCCAATCCAAAATCAAACC+AGG | - | chr4_4:71006423-71006442 | Msa0700120:CDS | 35.0% | |
| TTCTTTCTAGACTTGGATGA+AGG | + | chr4_4:71006511-71006530 | None:intergenic | 35.0% | |
| !! | TTGCTGCTTTCAATTACTGA+GGG | - | chr4_4:71006591-71006610 | Msa0700120:CDS | 35.0% |
| TTGAACTCGCATAGTGTATA+GGG | + | chr4_4:71006618-71006637 | None:intergenic | 35.0% | |
| ATTGAACTCGCATAGTGTAT+AGG | + | chr4_4:71006619-71006638 | None:intergenic | 35.0% | |
| AATCAGTATCACCGTAACAG+TGG | + | chr4_4:71002641-71002660 | None:intergenic | 40.0% | |
| TTTCCACAGCTGAAACCTAA+TGG | - | chr4_4:71002663-71002682 | Msa0700120:three_prime_UTR | 40.0% | |
| ! | TTGGATGTGTTTGTTGAGAG+TGG | + | chr4_4:71002752-71002771 | None:intergenic | 40.0% |
| !! | TTTAACGGCATTGGTGAATG+CGG | + | chr4_4:71002779-71002798 | None:intergenic | 40.0% |
| !! | TCGATTTGGTGATGCTGTTT+CGG | - | chr4_4:71002970-71002989 | Msa0700120:CDS | 40.0% |
| AGCTAGGATAGGGTAATTGA+TGG | - | chr4_4:71003104-71003123 | Msa0700120:CDS | 40.0% | |
| TGGACTAAATTGGAGAGAGA+AGG | - | chr4_4:71003386-71003405 | Msa0700120:CDS | 40.0% | |
| GAGAGAGAAGGTGATAGTTT+AGG | - | chr4_4:71003398-71003417 | Msa0700120:CDS | 40.0% | |
| !! | GAATGAAGCTTTGGAGTCTT+TGG | - | chr4_4:71004028-71004047 | Msa0700120:CDS | 40.0% |
| !!! | TCTTGGACTTTTGAAGCTTC+TGG | + | chr4_4:71004142-71004161 | None:intergenic | 40.0% |
| TTCTGTTGCTGCCTTAGTTA+TGG | - | chr4_4:71004181-71004200 | Msa0700120:CDS | 40.0% | |
| ! | GATCATCTGAAGTTCAAGGA+TGG | - | chr4_4:71004210-71004229 | Msa0700120:CDS | 40.0% |
| AAGGATGGCTGGATTCATTT+CGG | - | chr4_4:71004225-71004244 | Msa0700120:CDS | 40.0% | |
| !! | AGCAACAAGCAGCTTTGAAT+TGG | - | chr4_4:71004253-71004272 | Msa0700120:intron | 40.0% |
| GTTTGCAAGTCAAGTGTGAT+TGG | - | chr4_4:71004700-71004719 | Msa0700120:intron | 40.0% | |
| GTCTCCTATTGCTGTACAAT+TGG | - | chr4_4:71004959-71004978 | Msa0700120:intron | 40.0% | |
| TAGCCCAATTGTACAGCAAT+AGG | + | chr4_4:71004966-71004985 | None:intergenic | 40.0% | |
| AAATCAGAACTCCTACCTGT+TGG | + | chr4_4:71004992-71005011 | None:intergenic | 40.0% | |
| ! | ATCATTGATTGGCAGCTTCT+TGG | - | chr4_4:71005071-71005090 | Msa0700120:CDS | 40.0% |
| ! | TCATTGATTGGCAGCTTCTT+GGG | - | chr4_4:71005072-71005091 | Msa0700120:CDS | 40.0% |
| AACTGCAATGGACGATTCAT+CGG | + | chr4_4:71005150-71005169 | None:intergenic | 40.0% | |
| ATGGTTACATCGCAATCTGT+AGG | - | chr4_4:71005514-71005533 | Msa0700120:intron | 40.0% | |
| ACACTATCAGGAAACATGTC+TGG | + | chr4_4:71005563-71005582 | None:intergenic | 40.0% | |
| CTTTGTTCTCTCTAACCAAG+AGG | + | chr4_4:71005610-71005629 | None:intergenic | 40.0% | |
| TTGGTTAGAGAGAACAAAGC+TGG | - | chr4_4:71005611-71005630 | Msa0700120:intron | 40.0% | |
| TTAGAGAGAACAAAGCTGGA+AGG | - | chr4_4:71005615-71005634 | Msa0700120:intron | 40.0% | |
| TAGAGAGAACAAAGCTGGAA+GGG | - | chr4_4:71005616-71005635 | Msa0700120:intron | 40.0% | |
| ACCAGATATTCAACACATGC+CGG | - | chr4_4:71005766-71005785 | Msa0700120:intron | 40.0% | |
| ! | TCCATGCCTTAACTTGAATG+AGG | + | chr4_4:71005933-71005952 | None:intergenic | 40.0% |
| ! | CATTCAAGTTAAGGCATGGA+AGG | - | chr4_4:71005933-71005952 | Msa0700120:intron | 40.0% |
| TGCCCGTCTTGATGTTATTA+AGG | - | chr4_4:71006039-71006058 | Msa0700120:intron | 40.0% | |
| AAGAAACTAAAGACCTTGCC+TGG | - | chr4_4:71006076-71006095 | Msa0700120:intron | 40.0% | |
| ACATCAATTCCCTTCAATCC+AGG | + | chr4_4:71006097-71006116 | None:intergenic | 40.0% | |
| TGGATTGAAGGGAATTGATG+TGG | - | chr4_4:71006096-71006115 | Msa0700120:intron | 40.0% | |
| ! | AGAAAGCCAAGGTATCCTAA+AGG | - | chr4_4:71006232-71006251 | Msa0700120:intron | 40.0% |
| ! | GAAAGCCAAGGTATCCTAAA+GGG | - | chr4_4:71006233-71006252 | Msa0700120:intron | 40.0% |
| TTTGCAGGGTTAAACCCTTT+AGG | + | chr4_4:71006250-71006269 | None:intergenic | 40.0% | |
| TGCTGTAGTTAGAGATAAGC+AGG | - | chr4_4:71006378-71006397 | Msa0700120:CDS | 40.0% | |
| !! | TGCCTGGTTTGATTTTGGAT+TGG | + | chr4_4:71006428-71006447 | None:intergenic | 40.0% |
| !! | GAAGTTGCCTGGTTTGATTT+TGG | + | chr4_4:71006433-71006452 | None:intergenic | 40.0% |
| CCTAGACTTCTTTCTAGACT+TGG | + | chr4_4:71006518-71006537 | None:intergenic | 40.0% | |
| CCAAGTCTAGAAAGAAGTCT+AGG | - | chr4_4:71006515-71006534 | Msa0700120:intron | 40.0% | |
| !! | GTTGCTGCTTTCAATTACTG+AGG | - | chr4_4:71006590-71006609 | Msa0700120:CDS | 40.0% |
| CAAGTGTTAATGTGCGTGTT+TGG | - | chr4_4:71006697-71006716 | Msa0700120:five_prime_UTR | 40.0% | |
| AGAATAGAGAAACGCCGAAG+TGG | + | chr4_4:71002577-71002596 | None:intergenic | 45.0% | |
| GTAACAGTGGTTGTTGCTGA+GGG | + | chr4_4:71002628-71002647 | None:intergenic | 45.0% | |
| CTCAGCAACAACCACTGTTA+CGG | - | chr4_4:71002627-71002646 | Msa0700120:three_prime_UTR | 45.0% | |
| AATAGATCTTCGAGTGGAGG+TGG | + | chr4_4:71002727-71002746 | None:intergenic | 45.0% | |
| GTGAATAGATCTTCGAGTGG+AGG | + | chr4_4:71002730-71002749 | None:intergenic | 45.0% | |
| GTGGTGAATAGATCTTCGAG+TGG | + | chr4_4:71002733-71002752 | None:intergenic | 45.0% | |
| TCAACGCAACGATCTTGCAT+CGG | + | chr4_4:71002940-71002959 | None:intergenic | 45.0% | |
| TGGAAAAATGGATGCTTGCC+TGG | - | chr4_4:71004109-71004128 | Msa0700120:CDS | 45.0% | |
| GAAGCTTCTGGTAGATATCC+AGG | + | chr4_4:71004130-71004149 | None:intergenic | 45.0% | |
| TTGCTGCCTTAGTTATGGCA+GGG | - | chr4_4:71004186-71004205 | Msa0700120:CDS | 45.0% | |
| TGATCTCCCTGCCATAACTA+AGG | + | chr4_4:71004195-71004214 | None:intergenic | 45.0% | |
| ! | GGGAGATCATCTGAAGTTCA+AGG | - | chr4_4:71004206-71004225 | Msa0700120:CDS | 45.0% |
| ! | ATCTGAAGTTCAAGGATGGC+TGG | - | chr4_4:71004214-71004233 | Msa0700120:CDS | 45.0% |
| AGGATGGCTGGATTCATTTC+GGG | - | chr4_4:71004226-71004245 | Msa0700120:CDS | 45.0% | |
| AATATCACATCACCTTCGGG+CGG | + | chr4_4:71004345-71004364 | None:intergenic | 45.0% | |
| CCATTCATGTATAACCTCCC+AGG | + | chr4_4:71004847-71004866 | None:intergenic | 45.0% | |
| CCTGGGAGGTTATACATGAA+TGG | - | chr4_4:71004844-71004863 | Msa0700120:intron | 45.0% | |
| AATTGGTCAAGAGAGCCTGA+TGG | - | chr4_4:71004899-71004918 | Msa0700120:intron | 45.0% | |
| AGAGCCTGATGGAAGATAAC+TGG | - | chr4_4:71004910-71004929 | Msa0700120:intron | 45.0% | |
| ACAATTGGGCTATGTCCAAC+AGG | - | chr4_4:71004974-71004993 | Msa0700120:intron | 45.0% | |
| TCAAGTCCAATCCATGAGCT+AGG | + | chr4_4:71005271-71005290 | None:intergenic | 45.0% | |
| TCATGCTAACAGGATTGACC+AGG | - | chr4_4:71005346-71005365 | Msa0700120:intron | 45.0% | |
| GAAATACTGGCACAGTTTGC+TGG | - | chr4_4:71005644-71005663 | Msa0700120:intron | 45.0% | |
| TAAAGAACCTGGGACTTCTC+AGG | + | chr4_4:71005677-71005696 | None:intergenic | 45.0% | |
| CCTGGCTAAGTAAAGAACCT+GGG | + | chr4_4:71005687-71005706 | None:intergenic | 45.0% | |
| CCAGGTTCTTTACTTAGCCA+GGG | - | chr4_4:71005685-71005704 | Msa0700120:intron | 45.0% | |
| GAGAATCGGCTGCAATATGT+GGG | + | chr4_4:71005736-71005755 | None:intergenic | 45.0% | |
| AGAGAATCGGCTGCAATATG+TGG | + | chr4_4:71005737-71005756 | None:intergenic | 45.0% | |
| TGCTTGATTCTGCAACCAAG+TGG | - | chr4_4:71005852-71005871 | Msa0700120:intron | 45.0% | |
| TTGATTCTGCAACCAAGTGG+TGG | - | chr4_4:71005855-71005874 | Msa0700120:intron | 45.0% | |
| CATAGCATTAGACCACCACT+TGG | + | chr4_4:71005870-71005889 | None:intergenic | 45.0% | |
| GTGGTCTAATGCTATGACTG+AGG | - | chr4_4:71005874-71005893 | Msa0700120:intron | 45.0% | |
| ! | AGGCTGCCTCATTCAAGTTA+AGG | - | chr4_4:71005924-71005943 | Msa0700120:intron | 45.0% |
| ! | GCCTCATTCAAGTTAAGGCA+TGG | - | chr4_4:71005929-71005948 | Msa0700120:intron | 45.0% |
| GCATGCTGCTAAACTCTATG+AGG | - | chr4_4:71005961-71005980 | Msa0700120:intron | 45.0% | |
| TGAGGAGCTCGTTAAAAGTC+AGG | - | chr4_4:71005979-71005998 | Msa0700120:intron | 45.0% | |
| GAGGAGCTCGTTAAAAGTCA+GGG | - | chr4_4:71005980-71005999 | Msa0700120:intron | 45.0% | |
| !! | GAAGCATAGAAGCGCTAGTT+GGG | - | chr4_4:71006002-71006021 | Msa0700120:intron | 45.0% |
| AAAGACCTTGCCTGGATTGA+AGG | - | chr4_4:71006084-71006103 | Msa0700120:intron | 45.0% | |
| AAGACCTTGCCTGGATTGAA+GGG | - | chr4_4:71006085-71006104 | Msa0700120:intron | 45.0% | |
| AATTCCCTTCAATCCAGGCA+AGG | + | chr4_4:71006092-71006111 | None:intergenic | 45.0% | |
| GTTGAGGGTCCTCTTCATTT+AGG | - | chr4_4:71006151-71006170 | Msa0700120:intron | 45.0% | |
| TCGGCAACACCTAAATGAAG+AGG | + | chr4_4:71006163-71006182 | None:intergenic | 45.0% | |
| CTTTCCTTCGTCGTTCGTTT+CGG | + | chr4_4:71006182-71006201 | None:intergenic | 45.0% | |
| AAAGTTGACCTCTCTCGCTT+GGG | + | chr4_4:71006307-71006326 | None:intergenic | 45.0% | |
| AAAAGTTGACCTCTCTCGCT+TGG | + | chr4_4:71006308-71006327 | None:intergenic | 45.0% | |
| ! | AGCGAGAGAGGTCAACTTTT+AGG | - | chr4_4:71006308-71006327 | Msa0700120:intron | 45.0% |
| ! | AACTTTTAGGCCCAAGAGGA+AGG | - | chr4_4:71006321-71006340 | Msa0700120:CDS | 45.0% |
| AAACGAGCTGCTCAAGTTAG+AGG | - | chr4_4:71006346-71006365 | Msa0700120:CDS | 45.0% | |
| GTTAGAGATAAGCAGGAAGC+TGG | - | chr4_4:71006385-71006404 | Msa0700120:CDS | 45.0% | |
| TTGGATGAAGGCTTGGATGA+AGG | + | chr4_4:71006499-71006518 | None:intergenic | 45.0% | |
| TCTAGACTTGGATGAAGGCT+TGG | + | chr4_4:71006506-71006525 | None:intergenic | 45.0% | |
| CGTAACAGTGGTTGTTGCTG+AGG | + | chr4_4:71002629-71002648 | None:intergenic | 50.0% | |
| GAGCCATTAGGTTTCAGCTG+TGG | + | chr4_4:71002669-71002688 | None:intergenic | 50.0% | |
| CATTGGTGAATGCGGAAGCT+TGG | + | chr4_4:71002771-71002790 | None:intergenic | 50.0% | |
| ATCTTCTCGATCTCCTCCTG+AGG | - | chr4_4:71003000-71003019 | Msa0700120:CDS | 50.0% | |
| GTTGCTGCCTTAGTTATGGC+AGG | - | chr4_4:71004185-71004204 | Msa0700120:CDS | 50.0% | |
| CAGGCCAGTTATCTTCCATC+AGG | + | chr4_4:71004917-71004936 | None:intergenic | 50.0% | |
| TTGGGCTATGTCCAACAGGT+AGG | - | chr4_4:71004978-71004997 | Msa0700120:intron | 50.0% | |
| CAAAGCTTTCGCCTAGCTCA+TGG | - | chr4_4:71005257-71005276 | Msa0700120:CDS | 50.0% | |
| CTTTCGCCTAGCTCATGGAT+TGG | - | chr4_4:71005262-71005281 | Msa0700120:CDS | 50.0% | |
| TGGAAGGGCTGAGGAAATAC+TGG | - | chr4_4:71005631-71005650 | Msa0700120:intron | 50.0% | |
| AAAGTTGCCTGAGAAGTCCC+AGG | - | chr4_4:71005667-71005686 | Msa0700120:intron | 50.0% | |
| CCCAGGTTCTTTACTTAGCC+AGG | - | chr4_4:71005684-71005703 | Msa0700120:intron | 50.0% | |
| CCCTGGCTAAGTAAAGAACC+TGG | + | chr4_4:71005688-71005707 | None:intergenic | 50.0% | |
| TCTTTACTTAGCCAGGGCTC+AGG | - | chr4_4:71005691-71005710 | Msa0700120:intron | 50.0% | |
| AATCGGCTGCAATATGTGGG+TGG | + | chr4_4:71005733-71005752 | None:intergenic | 50.0% | |
| GCCGGCATGTGTTGAATATC+TGG | + | chr4_4:71005770-71005789 | None:intergenic | 50.0% | |
| !! | GGAAGCATAGAAGCGCTAGT+TGG | - | chr4_4:71006001-71006020 | Msa0700120:intron | 50.0% |
| GGGAATTGATGTGGACAGCT+TGG | - | chr4_4:71006105-71006124 | Msa0700120:intron | 50.0% | |
| ! | GGTCAACTTTTAGGCCCAAG+AGG | - | chr4_4:71006317-71006336 | Msa0700120:CDS | 50.0% |
| GCTCGTTTGTCCTTCCTCTT+GGG | + | chr4_4:71006334-71006353 | None:intergenic | 50.0% | |
| AGCTCGTTTGTCCTTCCTCT+TGG | + | chr4_4:71006335-71006354 | None:intergenic | 50.0% | |
| TGCTCAAGTTAGAGGCTCAC+AGG | - | chr4_4:71006354-71006373 | Msa0700120:CDS | 50.0% | |
| GCTCAAGTTAGAGGCTCACA+GGG | - | chr4_4:71006355-71006374 | Msa0700120:CDS | 50.0% | |
| AACCAGGCAACTTCCTCCAA+AGG | - | chr4_4:71006439-71006458 | Msa0700120:intron | 50.0% | |
| ACTCTGAGTAGCACCTTTGG+AGG | + | chr4_4:71006455-71006474 | None:intergenic | 50.0% | |
| TGCACTCTGAGTAGCACCTT+TGG | + | chr4_4:71006458-71006477 | None:intergenic | 50.0% | |
| TGAAGGCTTGGATGAAGGCT+TGG | + | chr4_4:71006494-71006513 | None:intergenic | 50.0% | |
| GTTTGGGCTTCGGAGCCATT+AGG | + | chr4_4:71002681-71002700 | None:intergenic | 55.0% | |
| ATCTTCGAGTGGAGGTGGAG+CGG | + | chr4_4:71002722-71002741 | None:intergenic | 55.0% | |
| GCAGTTCTCGCAATTGCACC+TGG | - | chr4_4:71002899-71002918 | Msa0700120:CDS | 55.0% | |
| AGGGCAGCTTGCAGCAATAC+TGG | + | chr4_4:71005590-71005609 | None:intergenic | 55.0% | |
| ATTGCTGCAAGCTGCCCTCT+TGG | - | chr4_4:71005592-71005611 | Msa0700120:intron | 55.0% | |
| GAACAAAGCTGGAAGGGCTG+AGG | - | chr4_4:71005622-71005641 | Msa0700120:intron | 55.0% | |
| ACAAGGGTGGCAACAGTAGC+CGG | + | chr4_4:71005788-71005807 | None:intergenic | 55.0% | |
| AGAACGAGCCAACGACGTTG+AGG | - | chr4_4:71005817-71005836 | Msa0700120:intron | 55.0% | |
| AGCTGCATCCTCAACGTCGT+TGG | + | chr4_4:71005828-71005847 | None:intergenic | 55.0% | |
| GACAGCTTGGAGCGTACTTC+TGG | - | chr4_4:71006118-71006137 | Msa0700120:intron | 55.0% | |
| GTTGCCGAAACGAACGACGA+AGG | - | chr4_4:71006175-71006194 | Msa0700120:intron | 55.0% | |
| GGGTTTAACCCTGCAAACCC+AGG | - | chr4_4:71006253-71006272 | Msa0700120:intron | 55.0% | |
| GTCCTCCACCAGATCCAGAA+AGG | - | chr4_4:71006275-71006294 | Msa0700120:intron | 55.0% | |
| CACCTTTCTGGATCTGGTGG+AGG | + | chr4_4:71006280-71006299 | None:intergenic | 55.0% | |
| CTCCACCAGATCCAGAAAGG+TGG | - | chr4_4:71006278-71006297 | Msa0700120:intron | 55.0% | |
| AGCCACCTTTCTGGATCTGG+TGG | + | chr4_4:71006283-71006302 | None:intergenic | 55.0% | |
| GGAAGCCACCTTTCTGGATC+TGG | + | chr4_4:71006286-71006305 | None:intergenic | 55.0% | |
| ! | CACCTTTGGAGGAAGTTGCC+TGG | + | chr4_4:71006444-71006463 | None:intergenic | 55.0% |
| !! | GACTGCGTCGGTTTGGGCTT+CGG | + | chr4_4:71002691-71002710 | None:intergenic | 60.0% |
| TCTTCGAGTGGAGGTGGAGC+GGG | + | chr4_4:71002721-71002740 | None:intergenic | 60.0% | |
| ! | AGCTCTTGTTGTCCGCCCGA+AGG | - | chr4_4:71004330-71004349 | Msa0700120:intron | 60.0% |
| ! | CTTAGCCAGGGCTCAGGTTG+CGG | - | chr4_4:71005697-71005716 | Msa0700120:intron | 60.0% |
| GTGGAGGACCTGGGTTTGCA+GGG | + | chr4_4:71006264-71006283 | None:intergenic | 60.0% | |
| CTGGATCTGGTGGAGGACCT+GGG | + | chr4_4:71006273-71006292 | None:intergenic | 60.0% | |
| TCTGGATCTGGTGGAGGACC+TGG | + | chr4_4:71006274-71006293 | None:intergenic | 60.0% | |
| CGCTTGGGAAGCCACCTTTC+TGG | + | chr4_4:71006292-71006311 | None:intergenic | 60.0% | |
| !! | GGCTGCGACTGCGTCGGTTT+GGG | + | chr4_4:71002697-71002716 | None:intergenic | 65.0% |
| !! | AGGCTGCGACTGCGTCGGTT+TGG | + | chr4_4:71002698-71002717 | None:intergenic | 65.0% |
| CGGAGTGCGTCTTCATCGCC+AGG | + | chr4_4:71002920-71002939 | None:intergenic | 65.0% | |
| GGTGGAGGACCTGGGTTTGC+AGG | + | chr4_4:71006265-71006284 | None:intergenic | 65.0% | |
| GGTGGCTTCCCAAGCGAGAG+AGG | - | chr4_4:71006296-71006315 | Msa0700120:intron | 65.0% | |
| TCGAGTGGAGGTGGAGCGGG+AGG | + | chr4_4:71002718-71002737 | None:intergenic | 70.0% | |
| ! | AGCCAGGGCTCAGGTTGCGG+CGG | - | chr4_4:71005700-71005719 | Msa0700120:intron | 70.0% |
| GCGGGAGGCTGCGACTGCGT+CGG | + | chr4_4:71002703-71002722 | None:intergenic | 75.0% | |
| ! | CAGGGCTCAGGTTGCGGCGG+CGG | - | chr4_4:71005703-71005722 | Msa0700120:intron | 75.0% |
| ! | CGCCGCCGCAACCTGAGCCC+TGG | + | chr4_4:71005705-71005724 | None:intergenic | 80.0% |
| !! | GCTCAGGTTGCGGCGGCGGC+TGG | - | chr4_4:71005707-71005726 | Msa0700120:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 71002571 | 71006784 | 71002571 | ID=Msa0700120;Name=Msa0700120 |
| chr4_4 | mRNA | 71002571 | 71006784 | 71002571 | ID=Msa0700120-mRNA-1;Parent=Msa0700120;Name=Msa0700120-mRNA-1;_AED=0.06;_eAED=0.06;_QI=111|1|1|1|1|1|6|241|668 |
| chr4_4 | exon | 71002571 | 71003819 | 71002571 | ID=Msa0700120-mRNA-1:exon:21557;Parent=Msa0700120-mRNA-1 |
| chr4_4 | exon | 71003988 | 71004269 | 71003988 | ID=Msa0700120-mRNA-1:exon:21556;Parent=Msa0700120-mRNA-1 |
| chr4_4 | exon | 71004360 | 71004456 | 71004360 | ID=Msa0700120-mRNA-1:exon:21555;Parent=Msa0700120-mRNA-1 |
| chr4_4 | exon | 71005004 | 71005356 | 71005004 | ID=Msa0700120-mRNA-1:exon:21554;Parent=Msa0700120-mRNA-1 |
| chr4_4 | exon | 71006316 | 71006452 | 71006316 | ID=Msa0700120-mRNA-1:exon:21553;Parent=Msa0700120-mRNA-1 |
| chr4_4 | exon | 71006544 | 71006784 | 71006544 | ID=Msa0700120-mRNA-1:exon:21552;Parent=Msa0700120-mRNA-1 |
| chr4_4 | five_prime_UTR | 71006674 | 71006784 | 71006674 | ID=Msa0700120-mRNA-1:five_prime_utr;Parent=Msa0700120-mRNA-1 |
| chr4_4 | CDS | 71006544 | 71006673 | 71006544 | ID=Msa0700120-mRNA-1:cds;Parent=Msa0700120-mRNA-1 |
| chr4_4 | CDS | 71006316 | 71006452 | 71006316 | ID=Msa0700120-mRNA-1:cds;Parent=Msa0700120-mRNA-1 |
| chr4_4 | CDS | 71005004 | 71005356 | 71005004 | ID=Msa0700120-mRNA-1:cds;Parent=Msa0700120-mRNA-1 |
| chr4_4 | CDS | 71004360 | 71004456 | 71004360 | ID=Msa0700120-mRNA-1:cds;Parent=Msa0700120-mRNA-1 |
| chr4_4 | CDS | 71003988 | 71004269 | 71003988 | ID=Msa0700120-mRNA-1:cds;Parent=Msa0700120-mRNA-1 |
| chr4_4 | CDS | 71002812 | 71003819 | 71002812 | ID=Msa0700120-mRNA-1:cds;Parent=Msa0700120-mRNA-1 |
| chr4_4 | three_prime_UTR | 71002571 | 71002811 | 71002571 | ID=Msa0700120-mRNA-1:three_prime_utr;Parent=Msa0700120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
