Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073550 | XP_003590454.2 | 95.722 | 561 | 24 | 0 | 1 | 561 | 1 | 561 | 0.0 | 1104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073550 | sp|Q9LD95|SIGF_ARATH | 49.383 | 567 | 261 | 8 | 1 | 561 | 1 | 547 | 1.35e-165 | 484 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073550 | G7IA88 | 95.722 | 561 | 24 | 0 | 1 | 561 | 1 | 561 | 0.0 | 1104 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0049990 | Msa0073550 | 0.800991 | 1.111303e-48 | -8.615850e-47 |
| Msa0073550 | Msa0168900 | 0.815658 | 8.258188e-52 | -8.615850e-47 |
| Msa0073550 | Msa0175280 | 0.801922 | 7.163340e-49 | -8.615850e-47 |
| Msa0073550 | Msa0280140 | 0.802724 | 4.897712e-49 | -8.615850e-47 |
| Msa0073550 | Msa0362840 | 0.800683 | 1.284618e-48 | -8.615850e-47 |
| Msa0073550 | Msa0399180 | 0.802782 | 4.764508e-49 | -8.615850e-47 |
| Msa0073550 | Msa0430020 | 0.800868 | 1.177870e-48 | -8.615850e-47 |
| Msa0073550 | Msa0704990 | 0.802695 | 4.966659e-49 | -8.615850e-47 |
| Msa0073550 | Msa0804110 | 0.815473 | 9.079867e-52 | -8.615850e-47 |
| Msa0073550 | Msa1032140 | 0.803135 | 4.028545e-49 | -8.615850e-47 |
| Msa0073550 | Msa1067430 | 0.819879 | 9.209970e-53 | -8.615850e-47 |
| Msa0073550 | Msa1132820 | 0.812706 | 3.705048e-51 | -8.615850e-47 |
| Msa0073550 | Msa1415250 | 0.817691 | 2.891273e-52 | -8.615850e-47 |
| Msa0073550 | Msa1416460 | 0.801603 | 8.330288e-49 | -8.615850e-47 |
| Msa0073550 | Msa1442030 | 0.806076 | 9.806799e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073550 | MtrunA17_Chr1g0180881 | 95.722 | 561 | 24 | 0 | 1 | 561 | 1 | 561 | 0.0 | 1104 |
| Msa0073550 | MtrunA17_Chr7g0264491 | 54.189 | 561 | 218 | 9 | 24 | 561 | 13 | 557 | 0.0 | 567 |
| Msa0073550 | MtrunA17_Chr3g0145921 | 35.052 | 388 | 247 | 1 | 169 | 556 | 187 | 569 | 6.80e-71 | 238 |
| Msa0073550 | MtrunA17_Chr3g0090001 | 32.323 | 297 | 196 | 1 | 261 | 557 | 111 | 402 | 3.11e-45 | 164 |
| Msa0073550 | MtrunA17_Chr1g0146481 | 29.938 | 324 | 213 | 3 | 244 | 559 | 232 | 549 | 1.83e-44 | 165 |
| Msa0073550 | MtrunA17_Chr4g0021031 | 30.719 | 306 | 198 | 6 | 249 | 545 | 189 | 489 | 5.44e-34 | 135 |
| Msa0073550 | MtrunA17_Chr3g0126401 | 29.210 | 291 | 195 | 4 | 261 | 545 | 216 | 501 | 3.14e-28 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073550 | AT2G36990.1 | 49.383 | 567 | 261 | 8 | 1 | 561 | 1 | 547 | 1.38e-166 | 484 |
| Msa0073550 | AT1G08540.1 | 38.920 | 352 | 206 | 5 | 196 | 545 | 212 | 556 | 5.48e-76 | 251 |
| Msa0073550 | AT3G53920.1 | 29.329 | 283 | 199 | 1 | 264 | 545 | 275 | 557 | 8.00e-44 | 164 |
| Msa0073550 | AT5G13730.1 | 32.982 | 285 | 188 | 1 | 261 | 545 | 122 | 403 | 6.08e-41 | 153 |
| Msa0073550 | AT1G64860.1 | 28.994 | 338 | 219 | 7 | 224 | 545 | 155 | 487 | 2.70e-35 | 139 |
| Msa0073550 | AT5G24120.1 | 31.834 | 289 | 190 | 5 | 261 | 545 | 219 | 504 | 1.38e-32 | 131 |
| Msa0073550 | AT5G24120.3 | 31.834 | 289 | 190 | 5 | 261 | 545 | 219 | 504 | 1.38e-32 | 131 |
| Msa0073550 | AT5G24120.2 | 31.834 | 289 | 190 | 5 | 261 | 545 | 219 | 504 | 1.38e-32 | 131 |
| Msa0073550 | AT1G64860.2 | 26.557 | 305 | 204 | 6 | 224 | 512 | 155 | 455 | 4.44e-29 | 121 |
| Msa0073550 | AT3G53920.2 | 26.471 | 136 | 100 | 0 | 264 | 399 | 275 | 410 | 5.34e-19 | 90.1 |
Find 150 sgRNAs with CRISPR-Local
Find 419 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAATTATCCTTCTTTCTTT+AGG | 0.163412 | 1_2:+47265141 | None:intergenic |
| CTAAATATTTCTTCGCTTCA+TGG | 0.186611 | 1_2:-47271340 | Msa0073550:five_prime_UTR |
| CCTTCTTGCTAATTCTTCTT+TGG | 0.187020 | 1_2:+47266526 | None:intergenic |
| ACCATTACTTTAGTGTATTA+TGG | 0.206770 | 1_2:-47271253 | Msa0073550:five_prime_UTR |
| AAATAAATGGTATTTATATA+TGG | 0.211339 | 1_2:-47264686 | Msa0073550:three_prime_UTR |
| TCAGAAATCGGGGAAATATT+TGG | 0.212988 | 1_2:-47265078 | Msa0073550:CDS |
| CCTTCATCTTCTTATACTTC+TGG | 0.214913 | 1_2:-47271140 | Msa0073550:intron |
| GTCAAAAGTTGCTTCGATTC+AGG | 0.252436 | 1_2:+47268683 | None:intergenic |
| GTTATGCATTTCAGTTTATA+TGG | 0.269945 | 1_2:-47264934 | Msa0073550:three_prime_UTR |
| ACAAGCCTTCAATCTCAATT+TGG | 0.273501 | 1_2:-47268523 | Msa0073550:CDS |
| GCTGAATGGGCTGAGGGTGC+AGG | 0.288139 | 1_2:-47268484 | Msa0073550:CDS |
| GCTGACAATTCAATTCCTTT+TGG | 0.290203 | 1_2:-47269040 | Msa0073550:CDS |
| GAATTATCCTTCTTTCTTTA+GGG | 0.290624 | 1_2:+47265142 | None:intergenic |
| TGTTTCGCAACACTCATGTT+TGG | 0.326275 | 1_2:+47265207 | None:intergenic |
| ACAGTGTTCTGCATAGAAAT+TGG | 0.335474 | 1_2:+47266452 | None:intergenic |
| CTTGCTAATTCTTCTTTGGT+TGG | 0.337398 | 1_2:+47266530 | None:intergenic |
| GTGTTCCAGTGGTGAGTTCT+TGG | 0.337470 | 1_2:+47271167 | None:intergenic |
| GTTTCGCAACACTCATGTTT+GGG | 0.338248 | 1_2:+47265208 | None:intergenic |
| GAGAAATCTTTATCAGAAAT+CGG | 0.339045 | 1_2:-47265090 | Msa0073550:CDS |
| GCCAATGAAACTTACCTTGC+TGG | 0.341398 | 1_2:-47268797 | Msa0073550:CDS |
| TTGCTAATTCTTCTTTGGTT+GGG | 0.347443 | 1_2:+47266531 | None:intergenic |
| ATTTGGAAGGGAACCGACTA+TGG | 0.349105 | 1_2:-47268506 | Msa0073550:CDS |
| TCCAGCAAGGTAAGTTTCAT+TGG | 0.360724 | 1_2:+47268796 | None:intergenic |
| AGGATAATTCGGCTAAGATT+TGG | 0.366663 | 1_2:-47265129 | Msa0073550:CDS |
| GTAACAGGAATTATTGAGAT+TGG | 0.367209 | 1_2:-47268557 | Msa0073550:intron |
| CCTGCATCTCTTGCCTCGTC+TGG | 0.375111 | 1_2:-47269326 | Msa0073550:CDS |
| GTATCCTCGTATTTCAGTTA+TGG | 0.376265 | 1_2:-47271231 | Msa0073550:exon |
| TAACTGACGGACCCTTTCTC+TGG | 0.378348 | 1_2:+47265050 | None:intergenic |
| TTCCTCACAAACAGGAGAAA+TGG | 0.380976 | 1_2:-47269176 | Msa0073550:CDS |
| CACCTTTCAAAACTTGATCT+AGG | 0.381073 | 1_2:+47264866 | None:intergenic |
| ATCAGGTAGCACGTGACTTC+AGG | 0.385184 | 1_2:-47269354 | Msa0073550:CDS |
| GGTGGATAAAACAAGCAATA+AGG | 0.390831 | 1_2:-47267326 | Msa0073550:CDS |
| CAGCATTGAGGACTTATTGC+AGG | 0.391505 | 1_2:-47268341 | Msa0073550:intron |
| TGAGACAGATACAACTTTCC+AGG | 0.392181 | 1_2:-47266423 | Msa0073550:intron |
| CCCTTCCAAATTGAGATTGA+AGG | 0.398348 | 1_2:+47268518 | None:intergenic |
| AAGTAAAGGTTCAGCCGAAC+TGG | 0.401281 | 1_2:+47268901 | None:intergenic |
| CTGAATGGGCTGAGGGTGCA+GGG | 0.405222 | 1_2:-47268483 | Msa0073550:CDS |
| CTATCTGCATGCTGTAAAGT+TGG | 0.406927 | 1_2:+47269145 | None:intergenic |
| TAACAAACTTAGCAAGGTAT+TGG | 0.408770 | 1_2:-47266591 | Msa0073550:CDS |
| CTAAAGAAAGAAGGATAATT+CGG | 0.411136 | 1_2:-47265140 | Msa0073550:CDS |
| CTGTAGGCCCAACTTGTTCC+CGG | 0.411671 | 1_2:+47270022 | None:intergenic |
| AGAAATCTTTATCAGAAATC+GGG | 0.414536 | 1_2:-47265089 | Msa0073550:CDS |
| CAGTTTAGCCTCTTCCAGTT+CGG | 0.417386 | 1_2:-47268915 | Msa0073550:CDS |
| TCAGTTGGTTGTTCAGATAC+AGG | 0.418134 | 1_2:-47268645 | Msa0073550:intron |
| TGATGCTCCGGGAACAAGTT+GGG | 0.423212 | 1_2:-47270029 | Msa0073550:CDS |
| TCGAAGTCGTGTTGATCTTA+CGG | 0.423948 | 1_2:+47268865 | None:intergenic |
| AAGAGATCAAAGTATTAAAC+AGG | 0.428369 | 1_2:-47264780 | Msa0073550:three_prime_UTR |
| AATAAATGGTATTTATATAT+GGG | 0.429457 | 1_2:-47264685 | Msa0073550:three_prime_UTR |
| AGTTCGGCTGAACCTTTACT+TGG | 0.432097 | 1_2:-47268899 | Msa0073550:CDS |
| AAGCTCAAGAAGTGTCTTGT+TGG | 0.438338 | 1_2:-47265009 | Msa0073550:CDS |
| TGCTACCTGATCAGTGTTGC+CGG | 0.444322 | 1_2:+47269366 | None:intergenic |
| AGGCAATATATAATCATTCC+AGG | 0.455533 | 1_2:-47267302 | Msa0073550:CDS |
| TTCTTAGAAATATGCAATAG+AGG | 0.460431 | 1_2:+47269919 | None:intergenic |
| TTCCGCAGCTGTCAGCCATT+AGG | 0.462714 | 1_2:+47264801 | None:intergenic |
| AGATTAACTTCCTCACAAAC+AGG | 0.464965 | 1_2:-47269184 | Msa0073550:CDS |
| AGTAACCTCTCAACCTTGTC+TGG | 0.467994 | 1_2:+47266491 | None:intergenic |
| TATTTAGATAGATATAGATA+TGG | 0.469921 | 1_2:+47271356 | None:intergenic |
| GGAACCGACTATGGCTGAAT+GGG | 0.470550 | 1_2:-47268497 | Msa0073550:CDS |
| GGGAACCGACTATGGCTGAA+TGG | 0.475910 | 1_2:-47268498 | Msa0073550:CDS |
| TAAATACAACGCAGATGGAT+AGG | 0.479182 | 1_2:-47269414 | Msa0073550:CDS |
| TATTTGGTTTATCCAGAGAA+AGG | 0.480775 | 1_2:-47265062 | Msa0073550:CDS |
| TAAGAAAGACAAGACATGTC+AGG | 0.481264 | 1_2:-47269902 | Msa0073550:intron |
| TGACACCGGCAACACTGATC+AGG | 0.494024 | 1_2:-47269371 | Msa0073550:CDS |
| CCAGACGAGGCAAGAGATGC+AGG | 0.494650 | 1_2:+47269326 | None:intergenic |
| GGACAAATCAGAGGGCCTAA+TGG | 0.495250 | 1_2:-47264816 | Msa0073550:three_prime_UTR |
| TCGGCTGAACCTTTACTTGG+AGG | 0.495395 | 1_2:-47268896 | Msa0073550:CDS |
| AAAGAAATTGTACATGGAAG+AGG | 0.496632 | 1_2:-47266564 | Msa0073550:CDS |
| ATTTGGTTTATCCAGAGAAA+GGG | 0.497439 | 1_2:-47265061 | Msa0073550:CDS |
| AAGAGCAGTGTGATGAGTAT+AGG | 0.500553 | 1_2:-47269942 | Msa0073550:CDS |
| ACTCTGCAGAAACTTGTTCA+AGG | 0.501884 | 1_2:+47268706 | None:intergenic |
| CAAAGAAGAATTAGCAAGAA+GGG | 0.504770 | 1_2:-47266525 | Msa0073550:CDS |
| GCCTTCAATCTCAATTTGGA+AGG | 0.505503 | 1_2:-47268519 | Msa0073550:CDS |
| TCTTGAGCTTGTAGAGTGCC+CGG | 0.505531 | 1_2:+47265022 | None:intergenic |
| TTGCTAGTTATGCATATTGG+TGG | 0.510435 | 1_2:-47267344 | Msa0073550:CDS |
| GTCTTCCAAGAACTCACCAC+TGG | 0.513181 | 1_2:-47271172 | Msa0073550:CDS |
| AATATGCATAACTAGCAAAT+CGG | 0.513716 | 1_2:+47267349 | None:intergenic |
| GAAGAATTAGCAAGAAGGGT+AGG | 0.515944 | 1_2:-47266521 | Msa0073550:CDS |
| GATTTGCTAGTTATGCATAT+TGG | 0.516441 | 1_2:-47267347 | Msa0073550:CDS |
| TCCCTCAAAACAAGCAGCCT+CGG | 0.518683 | 1_2:-47269101 | Msa0073550:CDS |
| TTTATGCAGGAGGGAAGCAC+AGG | 0.520299 | 1_2:-47267414 | Msa0073550:intron |
| GAAGGTAGAACTAACCCAAA+AGG | 0.521833 | 1_2:+47269025 | None:intergenic |
| CAAACTTAGCAAGGTATTGG+AGG | 0.522948 | 1_2:-47266588 | Msa0073550:CDS |
| AGGTTCAGCCGAACTGGAAG+AGG | 0.525196 | 1_2:+47268907 | None:intergenic |
| CAACTAAACGTACCGGTAGA+CGG | 0.525325 | 1_2:+47267274 | None:intergenic |
| TCTTGTAAAAGAACTGAAGT+AGG | 0.526396 | 1_2:+47269961 | None:intergenic |
| GATAAAGTTGAATGAAGTGA+GGG | 0.528237 | 1_2:+47271378 | None:intergenic |
| GGTCCGTCAGTTAGAGAGCC+GGG | 0.530333 | 1_2:-47265040 | Msa0073550:CDS |
| ACACTAAACTGCTGCAGTTG+AGG | 0.531737 | 1_2:-47264837 | Msa0073550:three_prime_UTR |
| GGGTCCGTCAGTTAGAGAGC+CGG | 0.535719 | 1_2:-47265041 | Msa0073550:CDS |
| TACCGGTAGACGGATTGTCC+TGG | 0.536478 | 1_2:+47267284 | None:intergenic |
| CCAAAGAAGAATTAGCAAGA+AGG | 0.540683 | 1_2:-47266526 | Msa0073550:CDS |
| ATTTCTATGCAGAACACTGT+GGG | 0.541514 | 1_2:-47266449 | Msa0073550:CDS |
| TTCCAGGACAATCCGTCTAC+CGG | 0.545032 | 1_2:-47267286 | Msa0073550:intron |
| AAATACAACGCAGATGGATA+GGG | 0.548297 | 1_2:-47269413 | Msa0073550:CDS |
| CCAGAAGTATAAGAAGATGA+AGG | 0.550354 | 1_2:+47271140 | None:intergenic |
| GACTATGGCTGAATGGGCTG+AGG | 0.550713 | 1_2:-47268491 | Msa0073550:CDS |
| ATCCATTTCTCCTGTTTGTG+AGG | 0.554473 | 1_2:+47269174 | None:intergenic |
| TCTTACGCCCTAAAGAAAGA+AGG | 0.558734 | 1_2:-47265149 | Msa0073550:CDS |
| AAAAGTTTAAAACTCAAGCT+GGG | 0.563576 | 1_2:-47267374 | Msa0073550:CDS |
| TTGGGCCTACAGTCACCGCC+TGG | 0.563611 | 1_2:-47270011 | Msa0073550:CDS |
| GTACAAAAGAAGACAAGTAA+AGG | 0.565858 | 1_2:-47268746 | Msa0073550:CDS |
| TTCTGAACAAGAGTCTCAGT+TGG | 0.565948 | 1_2:-47268660 | Msa0073550:CDS |
| CTATATAAGCAAGTCTGCAT+AGG | 0.570446 | 1_2:+47264972 | None:intergenic |
| GGTATATAACAAACTTAGCA+AGG | 0.574798 | 1_2:-47266597 | Msa0073550:CDS |
| AAGAAATTGTACATGGAAGA+GGG | 0.576209 | 1_2:-47266563 | Msa0073550:CDS |
| CTCTGCAGAAACTTGTTCAA+GGG | 0.576364 | 1_2:+47268707 | None:intergenic |
| AACATTAAATACAACGCAGA+TGG | 0.578908 | 1_2:-47269419 | Msa0073550:CDS |
| TTTCAGTTATGGAATCTGCT+AGG | 0.579621 | 1_2:-47271220 | Msa0073550:exon |
| AAGAAGTGTCTTGTTGGTCA+AGG | 0.579678 | 1_2:-47265003 | Msa0073550:CDS |
| ACCATAATACACTAAAGTAA+TGG | 0.580587 | 1_2:+47271252 | None:intergenic |
| GGCCTAATGGCTGACAGCTG+CGG | 0.588152 | 1_2:-47264803 | Msa0073550:three_prime_UTR |
| TCTTACAAGTTCTCCAGACG+AGG | 0.588352 | 1_2:+47269313 | None:intergenic |
| GGATAAAGTTGAATGAAGTG+AGG | 0.589492 | 1_2:+47271377 | None:intergenic |
| TTGATGCTCCGGGAACAAGT+TGG | 0.589910 | 1_2:-47270030 | Msa0073550:CDS |
| CCTTCAATCTCAATTTGGAA+GGG | 0.593088 | 1_2:-47268518 | Msa0073550:CDS |
| GATTCAAGCAAATTTACGCA+TGG | 0.593295 | 1_2:-47268401 | Msa0073550:CDS |
| CAATGCTGAGACCACGACCT+TGG | 0.594305 | 1_2:+47268356 | None:intergenic |
| GCTAAAAGTTACCAAGGTCG+TGG | 0.599982 | 1_2:-47268367 | Msa0073550:CDS |
| GGTAGGAATTTCACCAGACA+AGG | 0.600567 | 1_2:-47266504 | Msa0073550:CDS |
| GATAAAACAAGCAATAAGGA+AGG | 0.603808 | 1_2:-47267322 | Msa0073550:CDS |
| TGAGTTCTTGGAAGACAAAG+TGG | 0.608629 | 1_2:+47271179 | None:intergenic |
| TTTCACCAGACAAGGTTGAG+AGG | 0.614060 | 1_2:-47266496 | Msa0073550:CDS |
| GGAGGCAAAGAAATTGTACA+TGG | 0.616818 | 1_2:-47266570 | Msa0073550:CDS |
| AGGTCGTGGTCTCAGCATTG+AGG | 0.616834 | 1_2:-47268353 | Msa0073550:CDS |
| GAAATCTTTATCAGAAATCG+GGG | 0.623792 | 1_2:-47265088 | Msa0073550:CDS |
| GTATTTATATATGGGCAATG+TGG | 0.625783 | 1_2:-47264677 | Msa0073550:three_prime_UTR |
| GTACACCAGGCGGTGACTGT+AGG | 0.627629 | 1_2:+47270006 | None:intergenic |
| GCTTAACAGTCGGAAACTGA+AGG | 0.629532 | 1_2:-47268461 | Msa0073550:CDS |
| AGGGTGCAGGGCTTAACAGT+CGG | 0.632571 | 1_2:-47268471 | Msa0073550:CDS |
| TGCAGTTGAGGACAAATCAG+AGG | 0.633723 | 1_2:-47264825 | Msa0073550:three_prime_UTR |
| TATTAAGTCTTCAGCTACCG+AGG | 0.640013 | 1_2:+47269084 | None:intergenic |
| AATTTCTATGCAGAACACTG+TGG | 0.643164 | 1_2:-47266450 | Msa0073550:CDS |
| GCAGTTGAGGACAAATCAGA+GGG | 0.644744 | 1_2:-47264824 | Msa0073550:three_prime_UTR |
| ATTTAACATAAGCACCATGA+GGG | 0.648424 | 1_2:+47264624 | None:intergenic |
| TCAGCCCATTCAGCCATAGT+CGG | 0.648437 | 1_2:+47268493 | None:intergenic |
| TCACAAACAGGAGAAATGGA+TGG | 0.650514 | 1_2:-47269172 | Msa0073550:CDS |
| ATGAAGGAAGAGTGTTCCAG+TGG | 0.662656 | 1_2:+47271156 | None:intergenic |
| ACTATGGCTGAATGGGCTGA+GGG | 0.662679 | 1_2:-47268490 | Msa0073550:CDS |
| TACGTTGCTAAAAGTTACCA+AGG | 0.665092 | 1_2:-47268373 | Msa0073550:CDS |
| CTGAAGGCACAACTTCGTTG+TGG | 0.665965 | 1_2:-47268445 | Msa0073550:CDS |
| CATGGTGCTTATGTTAAATG+CGG | 0.673784 | 1_2:-47264620 | Msa0073550:three_prime_UTR |
| GTGCCCGGCTCTCTAACTGA+CGG | 0.674530 | 1_2:+47265037 | None:intergenic |
| GTTCAAGAAGAGAATGACAC+CGG | 0.677236 | 1_2:-47269385 | Msa0073550:CDS |
| AGATGAATAACTAGTACACC+AGG | 0.678814 | 1_2:+47269993 | None:intergenic |
| TTTCTATGCAGAACACTGTG+GGG | 0.686425 | 1_2:-47266448 | Msa0073550:CDS |
| AATATCAATTAAAGCTGACG+AGG | 0.690371 | 1_2:-47269065 | Msa0073550:CDS |
| CATTTAACATAAGCACCATG+AGG | 0.720687 | 1_2:+47264623 | None:intergenic |
| TATATAGAAGAGAATACACA+AGG | 0.721183 | 1_2:-47264956 | Msa0073550:exon |
| GATTCCATAACTGAAATACG+AGG | 0.757185 | 1_2:+47271227 | None:intergenic |
| TGAATAACTAGTACACCAGG+CGG | 0.766302 | 1_2:+47269996 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAATGTTATGTTTTTAT+TGG | - | chr1_2:47265874-47265893 | Msa0073550:intron | 10.0% |
| !!! | TTTATTTGATGTTTATTTTT+CGG | + | chr1_2:47271347-47271366 | None:intergenic | 10.0% |
| !! | AAAAATAAACATCAAATAAA+TGG | - | chr1_2:47271347-47271366 | Msa0073550:five_prime_UTR | 10.0% |
| !! | AAATAAATGGTATTTATATA+TGG | - | chr1_2:47271360-47271379 | Msa0073550:five_prime_UTR | 10.0% |
| !! | AATAAATGGTATTTATATAT+GGG | - | chr1_2:47271361-47271380 | Msa0073550:five_prime_UTR | 10.0% |
| !!! | ACGTAGTTTTTTTTTTTTTA+GGG | + | chr1_2:47264632-47264651 | None:intergenic | 15.0% |
| !!! | AACGTAGTTTTTTTTTTTTT+AGG | + | chr1_2:47264633-47264652 | None:intergenic | 15.0% |
| !! | TATTTAGATAGATATAGATA+TGG | + | chr1_2:47264693-47264712 | None:intergenic | 15.0% |
| !!! | ATTACATAGTTTTAAATTGT+GGG | + | chr1_2:47265072-47265091 | None:intergenic | 15.0% |
| !!! | AATTACATAGTTTTAAATTG+TGG | + | chr1_2:47265073-47265092 | None:intergenic | 15.0% |
| !! | TAAAACTATGTAATTATGAT+TGG | - | chr1_2:47265078-47265097 | Msa0073550:CDS | 15.0% |
| !!! | TAAGCAAAAATTCAAATTTT+TGG | - | chr1_2:47265299-47265318 | Msa0073550:intron | 15.0% |
| !! | AAAGTTAACAAAAAAAAAAG+TGG | + | chr1_2:47265741-47265760 | None:intergenic | 15.0% |
| !! | TTGAATCTTGAATTATATTA+AGG | - | chr1_2:47265799-47265818 | Msa0073550:intron | 15.0% |
| !! | AGAAAAAAAAGAAGAAAAAA+AGG | + | chr1_2:47266593-47266612 | None:intergenic | 15.0% |
| !!! | TTTTTTTTCTTTTTTACTTC+AGG | - | chr1_2:47266603-47266622 | Msa0073550:CDS | 15.0% |
| !! | TTCCTAAAAAGAAAATATTA+CGG | + | chr1_2:47267848-47267867 | None:intergenic | 15.0% |
| !!! | ACCTTTTTATTAATCAAAAT+GGG | + | chr1_2:47267908-47267927 | None:intergenic | 15.0% |
| !!! | TACCTTTTTATTAATCAAAA+TGG | + | chr1_2:47267909-47267928 | None:intergenic | 15.0% |
| !!! | TACTATATTTGTTTTCATAA+TGG | + | chr1_2:47269081-47269100 | None:intergenic | 15.0% |
| !!! | TGAAAATACAGTTCTAAATT+TGG | + | chr1_2:47265036-47265055 | None:intergenic | 20.0% |
| !! | AAAAGGATAATACTGAAAAT+TGG | + | chr1_2:47265145-47265164 | None:intergenic | 20.0% |
| !! | TCAAAATTATGGATAAGATA+AGG | + | chr1_2:47265194-47265213 | None:intergenic | 20.0% |
| !!! | TCTTATCCATAATTTTGAAT+TGG | - | chr1_2:47265196-47265215 | Msa0073550:CDS | 20.0% |
| !!! | CTTATCCATAATTTTGAATT+GGG | - | chr1_2:47265197-47265216 | Msa0073550:CDS | 20.0% |
| !! | ATACATCATTTATTGAATGT+AGG | - | chr1_2:47265364-47265383 | Msa0073550:intron | 20.0% |
| !!! | GAATTCATTTTACTAATTTG+TGG | - | chr1_2:47265451-47265470 | Msa0073550:intron | 20.0% |
| !!! | GAATTCATTTTACTAATTTG+TGG | - | chr1_2:47265451-47265470 | Msa0073550:intron | 20.0% |
| !!! | ATAAGATTTGTTTCACAATT+TGG | - | chr1_2:47265918-47265937 | Msa0073550:intron | 20.0% |
| !! | ATAACTCTAATAAAGATTGA+CGG | + | chr1_2:47266189-47266208 | None:intergenic | 20.0% |
| !!! | TCTAACTAAATAAAAGTACA+TGG | + | chr1_2:47266254-47266273 | None:intergenic | 20.0% |
| !!! | AAGTTAACTTTTCTTATACA+TGG | - | chr1_2:47266473-47266492 | Msa0073550:CDS | 20.0% |
| !! | AATCTAAAAATTAGAACCTA+AGG | + | chr1_2:47266515-47266534 | None:intergenic | 20.0% |
| !!! | CATAATGGAATAATATCAAA+TGG | - | chr1_2:47266550-47266569 | Msa0073550:CDS | 20.0% |
| !!! | AACCGTAATATTTTCTTTTT+AGG | - | chr1_2:47267843-47267862 | Msa0073550:intron | 20.0% |
| !!! | ACCCATTTTGATTAATAAAA+AGG | - | chr1_2:47267904-47267923 | Msa0073550:intron | 20.0% |
| !!! | TCTGTTCACATTTTTTTTAA+TGG | - | chr1_2:47268077-47268096 | Msa0073550:intron | 20.0% |
| !!! | AAAAAGTGCTTTTGTTTAAA+GGG | - | chr1_2:47268180-47268199 | Msa0073550:intron | 20.0% |
| !! | GAGTAATTAGTTAATTAGTT+TGG | - | chr1_2:47268281-47268300 | Msa0073550:intron | 20.0% |
| !!! | CTCGTTTTATATTATCTTTT+AGG | - | chr1_2:47268947-47268966 | Msa0073550:intron | 20.0% |
| !!! | ACGTTTTTTGTTTGTATTTT+TGG | + | chr1_2:47269104-47269123 | None:intergenic | 20.0% |
| !!! | TTTAAAAAAATGGATTGGAT+TGG | + | chr1_2:47269267-47269286 | None:intergenic | 20.0% |
| !!! | CAATCCATTTTTTTAAAAAG+CGG | - | chr1_2:47269270-47269289 | Msa0073550:intron | 20.0% |
| !!! | AAAACCGCTTTTTAAAAAAA+TGG | + | chr1_2:47269277-47269296 | None:intergenic | 20.0% |
| !!! | TTTTTTAAAAAGCGGTTTTT+AGG | - | chr1_2:47269278-47269297 | Msa0073550:intron | 20.0% |
| !!! | GTTTTTAGGTATTTTTGAAT+CGG | - | chr1_2:47269292-47269311 | Msa0073550:intron | 20.0% |
| !!! | AAGTAAGATCATTTTTGTTA+GGG | + | chr1_2:47269362-47269381 | None:intergenic | 20.0% |
| !!! | AAAGTAAGATCATTTTTGTT+AGG | + | chr1_2:47269363-47269382 | None:intergenic | 20.0% |
| !!! | TAACATTATAGTTTTCCAAA+TGG | + | chr1_2:47269748-47269767 | None:intergenic | 20.0% |
| !!! | ACAACATTTAAGATTCATAT+TGG | + | chr1_2:47269869-47269888 | None:intergenic | 20.0% |
| !!! | ATTGATTTTTAAATAGCGTT+TGG | - | chr1_2:47269995-47270014 | Msa0073550:CDS | 20.0% |
| !!! | TTTAAAATCAACTTTTACCA+TGG | + | chr1_2:47270026-47270045 | None:intergenic | 20.0% |
| !! | AAGTTGTTATCAAATATTTC+CGG | - | chr1_2:47270540-47270559 | Msa0073550:intron | 20.0% |
| !! | AAACATTTCAATCAAAAGAA+AGG | + | chr1_2:47270635-47270654 | None:intergenic | 20.0% |
| ! | ACCATTACTTTAGTGTATTA+TGG | - | chr1_2:47264793-47264812 | Msa0073550:three_prime_UTR | 25.0% |
| ! | ACCATAATACACTAAAGTAA+TGG | + | chr1_2:47264797-47264816 | None:intergenic | 25.0% |
| !!! | TGGTTGATGATTCTAAATTA+CGG | - | chr1_2:47264998-47265017 | Msa0073550:CDS | 25.0% |
| !! | TAGAACTGTATTTTCAATTG+CGG | - | chr1_2:47265040-47265059 | Msa0073550:CDS | 25.0% |
| ! | AGGTTAAAAAATATCACAAG+TGG | + | chr1_2:47265174-47265193 | None:intergenic | 25.0% |
| ! | TACAATCCATTATCCATATT+TGG | + | chr1_2:47265256-47265275 | None:intergenic | 25.0% |
| ! | TATTGAATAAGTGATGTATG+TGG | - | chr1_2:47265324-47265343 | Msa0073550:intron | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | chr1_2:47265363-47265382 | None:intergenic | 25.0% |
| !! | GTGGTTTTTCATAACTTTTT+AGG | - | chr1_2:47265470-47265489 | Msa0073550:intron | 25.0% |
| ! | TCTGAAAATGTTTACAACTA+TGG | - | chr1_2:47265516-47265535 | Msa0073550:intron | 25.0% |
| ! | CTGAATATGTGTTACAATTA+TGG | - | chr1_2:47265650-47265669 | Msa0073550:intron | 25.0% |
| ! | GATTCAAGTCATAAATCAAA+TGG | + | chr1_2:47265786-47265805 | None:intergenic | 25.0% |
| ! | TTCTTAGAAATATGCAATAG+AGG | + | chr1_2:47266130-47266149 | None:intergenic | 25.0% |
| ! | TAGAGTTATCCATCTTTATT+CGG | - | chr1_2:47266200-47266219 | Msa0073550:intron | 25.0% |
| ! | TAAATTTGACCGAATAAAGA+TGG | + | chr1_2:47266212-47266231 | None:intergenic | 25.0% |
| ! | AAACTAACTAAACAGAAACA+CGG | + | chr1_2:47266317-47266336 | None:intergenic | 25.0% |
| ! | CTAATATGAAAATGTTGAAG+AGG | + | chr1_2:47266428-47266447 | None:intergenic | 25.0% |
| !! | CTCTTCAACATTTTCATATT+AGG | - | chr1_2:47266426-47266445 | Msa0073550:CDS | 25.0% |
| !!! | TAGAGCATCTTATACATTTT+AGG | + | chr1_2:47267455-47267474 | None:intergenic | 25.0% |
| ! | TATAAGATGCTCTATTAATG+TGG | - | chr1_2:47267461-47267480 | Msa0073550:intron | 25.0% |
| ! | ATTAATGTGGATAATGTAAC+AGG | - | chr1_2:47267474-47267493 | Msa0073550:intron | 25.0% |
| ! | CTCATAGTTTACCTAAAATT+GGG | - | chr1_2:47267758-47267777 | Msa0073550:intron | 25.0% |
| ! | CAACTTGTGTTTAAATACTA+CGG | + | chr1_2:47267874-47267893 | None:intergenic | 25.0% |
| !!! | GTATCTTTTTACTTTTGAAC+CGG | - | chr1_2:47268012-47268031 | Msa0073550:intron | 25.0% |
| !!! | TATCTTTTTACTTTTGAACC+GGG | - | chr1_2:47268013-47268032 | Msa0073550:intron | 25.0% |
| !!! | ATACGGGTTATTATATTTTG+AGG | + | chr1_2:47268124-47268143 | None:intergenic | 25.0% |
| ! | ATAACCCGTATATAAATGTT+TGG | - | chr1_2:47268133-47268152 | Msa0073550:intron | 25.0% |
| ! | TCTAGCCAAACATTTATATA+CGG | + | chr1_2:47268141-47268160 | None:intergenic | 25.0% |
| !!! | GAAAAAGTGCTTTTGTTTAA+AGG | - | chr1_2:47268179-47268198 | Msa0073550:intron | 25.0% |
| ! | TATAATTACCAGCTATATCT+TGG | - | chr1_2:47268237-47268256 | Msa0073550:intron | 25.0% |
| !!! | ATTGTAAGTACTTTTTGAGT+TGG | - | chr1_2:47268352-47268371 | Msa0073550:CDS | 25.0% |
| ! | CCAGAATCAAAAAATGTAAA+AGG | + | chr1_2:47268610-47268629 | None:intergenic | 25.0% |
| !!! | CCTTTTACATTTTTTGATTC+TGG | - | chr1_2:47268607-47268626 | Msa0073550:intron | 25.0% |
| !! | ACTTTTTAACACTCTTTATG+AGG | + | chr1_2:47268658-47268677 | None:intergenic | 25.0% |
| !! | AAAAAGTTTAAAACTCAAGC+TGG | - | chr1_2:47268671-47268690 | Msa0073550:CDS | 25.0% |
| !! | AAAAGTTTAAAACTCAAGCT+GGG | - | chr1_2:47268672-47268691 | Msa0073550:CDS | 25.0% |
| ! | AATATGCATAACTAGCAAAT+CGG | + | chr1_2:47268700-47268719 | None:intergenic | 25.0% |
| ! | ATTTAATCAACTAAACGTAC+CGG | + | chr1_2:47268782-47268801 | None:intergenic | 25.0% |
| ! | TTGACAGAGAACAAAAATTA+AGG | - | chr1_2:47268851-47268870 | Msa0073550:CDS | 25.0% |
| !! | ATAACTCTTTATTTGGTGAA+AGG | + | chr1_2:47268998-47269017 | None:intergenic | 25.0% |
| ! | CAACAACATTAATTACATAC+AGG | - | chr1_2:47269186-47269205 | Msa0073550:intron | 25.0% |
| !!! | CGCTTTTTAAAAAAATGGAT+TGG | + | chr1_2:47269272-47269291 | None:intergenic | 25.0% |
| !! | TTTTACAGTTTTCATTGGAT+TGG | - | chr1_2:47269316-47269335 | Msa0073550:intron | 25.0% |
| !!! | AGTAAGATCATTTTTGTTAG+GGG | + | chr1_2:47269361-47269380 | None:intergenic | 25.0% |
| ! | ATATAATTTCCACCTTGAAA+AGG | - | chr1_2:47269669-47269688 | Msa0073550:intron | 25.0% |
| ! | TCATGTTCTTTATATCCATT+TGG | - | chr1_2:47269730-47269749 | Msa0073550:intron | 25.0% |
| ! | TGAAAACTAGTAAAACTGAA+TGG | - | chr1_2:47269822-47269841 | Msa0073550:intron | 25.0% |
| ! | GAAAACTAGTAAAACTGAAT+GGG | - | chr1_2:47269823-47269842 | Msa0073550:intron | 25.0% |
| ! | TGAATCTTAAATGTTGTGTT+TGG | - | chr1_2:47269872-47269891 | Msa0073550:intron | 25.0% |
| !!! | ATTGATTTTTCCTCTAGAAT+TGG | + | chr1_2:47270143-47270162 | None:intergenic | 25.0% |
| !!! | CAATTGATTTTGACATGTTT+AGG | + | chr1_2:47270180-47270199 | None:intergenic | 25.0% |
| !!! | CAATTGATTTTGACATGTTT+AGG | + | chr1_2:47270180-47270199 | None:intergenic | 25.0% |
| !! | ATTGAGTATAGAATCACTTT+TGG | - | chr1_2:47270237-47270256 | Msa0073550:intron | 25.0% |
| ! | GAATTGAACAAATCAATTCA+AGG | - | chr1_2:47270340-47270359 | Msa0073550:intron | 25.0% |
| !! | ATATGGCTTTTATTCAGTTT+TGG | - | chr1_2:47270598-47270617 | Msa0073550:intron | 25.0% |
| ! | ACTGAATTTGATTCTAACAT+AGG | - | chr1_2:47270751-47270770 | Msa0073550:intron | 25.0% |
| ! | CTGCAATTATAAGAAAATGA+TGG | + | chr1_2:47270789-47270808 | None:intergenic | 25.0% |
| !! | CATCATTTTCTTATAATTGC+AGG | - | chr1_2:47270787-47270806 | Msa0073550:intron | 25.0% |
| ! | GAATTATCCTTCTTTCTTTA+GGG | + | chr1_2:47270907-47270926 | None:intergenic | 25.0% |
| ! | CTAAAGAAAGAAGGATAATT+CGG | - | chr1_2:47270906-47270925 | Msa0073550:intron | 25.0% |
| ! | GAGAAATCTTTATCAGAAAT+CGG | - | chr1_2:47270956-47270975 | Msa0073550:intron | 25.0% |
| ! | AGAAATCTTTATCAGAAATC+GGG | - | chr1_2:47270957-47270976 | Msa0073550:intron | 25.0% |
| ! | TATATAGAAGAGAATACACA+AGG | - | chr1_2:47271090-47271109 | Msa0073550:intron | 25.0% |
| ! | GTTATGCATTTCAGTTTATA+TGG | - | chr1_2:47271112-47271131 | Msa0073550:intron | 25.0% |
| !! | AAGAGATCAAAGTATTAAAC+AGG | - | chr1_2:47271266-47271285 | Msa0073550:five_prime_UTR | 25.0% |
| GATAAAGTTGAATGAAGTGA+GGG | + | chr1_2:47264671-47264690 | None:intergenic | 30.0% | |
| CTAAATATTTCTTCGCTTCA+TGG | - | chr1_2:47264706-47264725 | Msa0073550:three_prime_UTR | 30.0% | |
| GTCAAAGTTATCTTAAAGCA+TGG | - | chr1_2:47264978-47264997 | Msa0073550:CDS | 30.0% | |
| TCATGCATACAAAGTTACAA+AGG | + | chr1_2:47265225-47265244 | None:intergenic | 30.0% | |
| CATCTTCCAAATATGGATAA+TGG | - | chr1_2:47265247-47265266 | Msa0073550:intron | 30.0% | |
| ! | GTTTTGCTTATAATAGTGAC+TGG | - | chr1_2:47265398-47265417 | Msa0073550:intron | 30.0% |
| TGTGTTTGTGTAAAACTAGA+AGG | + | chr1_2:47265621-47265640 | None:intergenic | 30.0% | |
| AAATCAAATGGCAAGAAAAG+TGG | + | chr1_2:47265774-47265793 | None:intergenic | 30.0% | |
| TGTTTCACAATTTGGAGAAT+AGG | - | chr1_2:47265926-47265945 | Msa0073550:intron | 30.0% | |
| !! | GAATCTCGTTTTAATAACCA+TGG | - | chr1_2:47265962-47265981 | Msa0073550:intron | 30.0% |
| TCTTGTAAAAGAACTGAAGT+AGG | + | chr1_2:47266088-47266107 | None:intergenic | 30.0% | |
| ! | AATAAAAGTACATGGTAGAG+AGG | + | chr1_2:47266246-47266265 | None:intergenic | 30.0% |
| AAAGTTGTGCTTTCATTGAA+TGG | + | chr1_2:47266400-47266419 | None:intergenic | 30.0% | |
| TATACATGGAATGCAGTAAA+TGG | - | chr1_2:47266487-47266506 | Msa0073550:CDS | 30.0% | |
| TTCCATTATGTGATGAAGTA+GGG | + | chr1_2:47266540-47266559 | None:intergenic | 30.0% | |
| ATTCCATTATGTGATGAAGT+AGG | + | chr1_2:47266541-47266560 | None:intergenic | 30.0% | |
| AACATTAAATACAACGCAGA+TGG | - | chr1_2:47266627-47266646 | Msa0073550:intron | 30.0% | |
| GTCTGTTAGTAATTGTTAAG+TGG | - | chr1_2:47266786-47266805 | Msa0073550:intron | 30.0% | |
| AATATCAATTAAAGCTGACG+AGG | - | chr1_2:47266981-47267000 | Msa0073550:intron | 30.0% | |
| ! | CTGACAATTCAATTCCTTTT+GGG | - | chr1_2:47267007-47267026 | Msa0073550:intron | 30.0% |
| !! | ACTTTACTTTTCCTGGTTTT+AGG | - | chr1_2:47267065-47267084 | Msa0073550:intron | 30.0% |
| !!! | TCCTGGTTTTAGGTTAATTT+TGG | - | chr1_2:47267075-47267094 | Msa0073550:intron | 30.0% |
| ACCAAAATTAACCTAAAACC+AGG | + | chr1_2:47267079-47267098 | None:intergenic | 30.0% | |
| !!! | TGGTTTTAGGTTAATTTTGG+TGG | - | chr1_2:47267078-47267097 | Msa0073550:intron | 30.0% |
| !!! | TTGGCTTTAACTTTTGACTT+CGG | + | chr1_2:47267234-47267253 | None:intergenic | 30.0% |
| GTACAAAAGAAGACAAGTAA+AGG | - | chr1_2:47267300-47267319 | Msa0073550:CDS | 30.0% | |
| GTAACAGGAATTATTGAGAT+TGG | - | chr1_2:47267489-47267508 | Msa0073550:intron | 30.0% | |
| GCTCATAGTTTACCTAAAAT+TGG | - | chr1_2:47267757-47267776 | Msa0073550:intron | 30.0% | |
| CAATATTTGATTGTGGAGTT+CGG | + | chr1_2:47267971-47267990 | None:intergenic | 30.0% | |
| GAGAACACAATATTTGATTG+TGG | + | chr1_2:47267978-47267997 | None:intergenic | 30.0% | |
| CTAGCCAAACATTTATATAC+GGG | + | chr1_2:47268140-47268159 | None:intergenic | 30.0% | |
| TATAAATGTTTGGCTAGAGT+TGG | - | chr1_2:47268143-47268162 | Msa0073550:intron | 30.0% | |
| !! | TGTTAAGTTAGTTGGTGATT+CGG | - | chr1_2:47268318-47268337 | Msa0073550:intron | 30.0% |
| !! | GATTTGCTAGTTATGCATAT+TGG | - | chr1_2:47268699-47268718 | Msa0073550:CDS | 30.0% |
| GATAAAACAAGCAATAAGGA+AGG | - | chr1_2:47268724-47268743 | Msa0073550:CDS | 30.0% | |
| AGGCAATATATAATCATTCC+AGG | - | chr1_2:47268744-47268763 | Msa0073550:CDS | 30.0% | |
| ACAAAAATTAAGGTAGTTCG+TGG | - | chr1_2:47268861-47268880 | Msa0073550:CDS | 30.0% | |
| GCAACACATAACTCTTTATT+TGG | + | chr1_2:47269005-47269024 | None:intergenic | 30.0% | |
| ! | TCAGTTTTCACAACAGAAAA+TGG | - | chr1_2:47269238-47269257 | Msa0073550:intron | 30.0% |
| GGTATATAACAAACTTAGCA+AGG | - | chr1_2:47269449-47269468 | Msa0073550:intron | 30.0% | |
| TAACAAACTTAGCAAGGTAT+TGG | - | chr1_2:47269455-47269474 | Msa0073550:intron | 30.0% | |
| AAAGAAATTGTACATGGAAG+AGG | - | chr1_2:47269482-47269501 | Msa0073550:intron | 30.0% | |
| AAGAAATTGTACATGGAAGA+GGG | - | chr1_2:47269483-47269502 | Msa0073550:intron | 30.0% | |
| TTGCTAATTCTTCTTTGGTT+GGG | + | chr1_2:47269518-47269537 | None:intergenic | 30.0% | |
| CAAAGAAGAATTAGCAAGAA+GGG | - | chr1_2:47269521-47269540 | Msa0073550:intron | 30.0% | |
| !! | TTCAGCTTCTTACTTTTGTT+TGG | - | chr1_2:47269768-47269787 | Msa0073550:intron | 30.0% |
| TTGAGTGTAAAAACCATGTT+TGG | - | chr1_2:47270082-47270101 | Msa0073550:intron | 30.0% | |
| AGCTACAAATTATAGCTTCA+AGG | - | chr1_2:47270112-47270131 | Msa0073550:intron | 30.0% | |
| !! | AGGCTAAAAATCACTTTTAG+AGG | - | chr1_2:47270360-47270379 | Msa0073550:intron | 30.0% |
| ! | AACAGGCAAAATTGATTCTA+GGG | + | chr1_2:47270455-47270474 | None:intergenic | 30.0% |
| !!! | AATTTTGCCTGTTCTAAAAG+TGG | - | chr1_2:47270462-47270481 | Msa0073550:intron | 30.0% |
| !!! | TTTGATTCCACTTTTAGAAC+AGG | + | chr1_2:47270472-47270491 | None:intergenic | 30.0% |
| ! | TTTGTTCTTCCTTTGTTTAG+AGG | - | chr1_2:47270652-47270671 | Msa0073550:intron | 30.0% |
| ! | TTGTTCTTCCTTTGTTTAGA+GGG | - | chr1_2:47270653-47270672 | Msa0073550:intron | 30.0% |
| CGAATTATCCTTCTTTCTTT+AGG | + | chr1_2:47270908-47270927 | None:intergenic | 30.0% | |
| !!! | CTAAGATTTGGTTTTGAAGA+TGG | - | chr1_2:47270929-47270948 | Msa0073550:intron | 30.0% |
| GAAATCTTTATCAGAAATCG+GGG | - | chr1_2:47270958-47270977 | Msa0073550:intron | 30.0% | |
| ! | TATTTGGTTTATCCAGAGAA+AGG | - | chr1_2:47270984-47271003 | Msa0073550:intron | 30.0% |
| ! | ATTTGGTTTATCCAGAGAAA+GGG | - | chr1_2:47270985-47271004 | Msa0073550:intron | 30.0% |
| !!! | TACCTAGATCAAGTTTTGAA+AGG | - | chr1_2:47271178-47271197 | Msa0073550:CDS | 30.0% |
| GTATTTATATATGGGCAATG+TGG | - | chr1_2:47271369-47271388 | Msa0073550:five_prime_UTR | 30.0% | |
| ATTTAACATAAGCACCATGA+GGG | + | chr1_2:47271425-47271444 | None:intergenic | 30.0% | |
| !!! | CTTATTTTAGACCTCTGGTT+TGG | + | chr1_2:47264596-47264615 | None:intergenic | 35.0% |
| GGATAAAGTTGAATGAAGTG+AGG | + | chr1_2:47264672-47264691 | None:intergenic | 35.0% | |
| GTATCCTCGTATTTCAGTTA+TGG | - | chr1_2:47264815-47264834 | Msa0073550:three_prime_UTR | 35.0% | |
| GATTCCATAACTGAAATACG+AGG | + | chr1_2:47264822-47264841 | None:intergenic | 35.0% | |
| TTTCAGTTATGGAATCTGCT+AGG | - | chr1_2:47264826-47264845 | Msa0073550:three_prime_UTR | 35.0% | |
| ! | CCAGAAGTATAAGAAGATGA+AGG | + | chr1_2:47264909-47264928 | None:intergenic | 35.0% |
| CCTTCATCTTCTTATACTTC+TGG | - | chr1_2:47264906-47264925 | Msa0073550:three_prime_UTR | 35.0% | |
| ! | TGTATTTTCAATTGCGGTTG+CGG | - | chr1_2:47265046-47265065 | Msa0073550:CDS | 35.0% |
| ATCACAAGTGGAACTTCAAA+AGG | + | chr1_2:47265162-47265181 | None:intergenic | 35.0% | |
| AGGCTCCCAATTCAAAATTA+TGG | + | chr1_2:47265205-47265224 | None:intergenic | 35.0% | |
| CATGATGCATCTTCCAAATA+TGG | - | chr1_2:47265240-47265259 | Msa0073550:CDS | 35.0% | |
| TTGCTTATAATAGTGACTGG+AGG | - | chr1_2:47265401-47265420 | Msa0073550:intron | 35.0% | |
| TGCTTATAATAGTGACTGGA+GGG | - | chr1_2:47265402-47265421 | Msa0073550:intron | 35.0% | |
| ! | TTTATCCGCTCAAGTTTTTC+TGG | - | chr1_2:47265833-47265852 | Msa0073550:intron | 35.0% |
| AGATGAATAACTAGTACACC+AGG | + | chr1_2:47266056-47266075 | None:intergenic | 35.0% | |
| TAAGAAAGACAAGACATGTC+AGG | - | chr1_2:47266144-47266163 | Msa0073550:intron | 35.0% | |
| TTAGGCAGTATCAACATACA+AGG | - | chr1_2:47266444-47266463 | Msa0073550:CDS | 35.0% | |
| TTCCCTACTTCATCACATAA+TGG | - | chr1_2:47266535-47266554 | Msa0073550:CDS | 35.0% | |
| TAAATACAACGCAGATGGAT+AGG | - | chr1_2:47266632-47266651 | Msa0073550:intron | 35.0% | |
| AAATACAACGCAGATGGATA+GGG | - | chr1_2:47266633-47266652 | Msa0073550:intron | 35.0% | |
| AGATTAACTTCCTCACAAAC+AGG | - | chr1_2:47266862-47266881 | Msa0073550:intron | 35.0% | |
| ! | GCTGACAATTCAATTCCTTT+TGG | - | chr1_2:47267006-47267025 | Msa0073550:intron | 35.0% |
| !! | CATCTTCACTTTACTTTTCC+TGG | - | chr1_2:47267058-47267077 | Msa0073550:intron | 35.0% |
| !! | GTTTTATTGCCTCCAAGTAA+AGG | + | chr1_2:47267162-47267181 | None:intergenic | 35.0% |
| ACAAGCCTTCAATCTCAATT+TGG | - | chr1_2:47267523-47267542 | Msa0073550:intron | 35.0% | |
| CCTTCAATCTCAATTTGGAA+GGG | - | chr1_2:47267528-47267547 | Msa0073550:intron | 35.0% | |
| GATTCAAGCAAATTTACGCA+TGG | - | chr1_2:47267645-47267664 | Msa0073550:intron | 35.0% | |
| TACGTTGCTAAAAGTTACCA+AGG | - | chr1_2:47267673-47267692 | Msa0073550:intron | 35.0% | |
| TAGTTTACCTAAAATTGGGC+AGG | - | chr1_2:47267762-47267781 | Msa0073550:intron | 35.0% | |
| ATATTACGGTTCAGTTTGCA+AGG | + | chr1_2:47267834-47267853 | None:intergenic | 35.0% | |
| !! | TTTTTACTTTTGAACCGGGT+TGG | - | chr1_2:47268017-47268036 | Msa0073550:intron | 35.0% |
| ! | CCTTTTCTATACTGATGTGA+TGG | + | chr1_2:47268053-47268072 | None:intergenic | 35.0% |
| CCATCACATCAGTATAGAAA+AGG | - | chr1_2:47268050-47268069 | Msa0073550:intron | 35.0% | |
| !!! | TGGTCAGTTTTGTTCTTCAT+TGG | - | chr1_2:47268097-47268116 | Msa0073550:intron | 35.0% |
| TAGAGTTGGAGCATAAATTG+TGG | - | chr1_2:47268157-47268176 | Msa0073550:intron | 35.0% | |
| CAGAAAAACCAAGATATAGC+TGG | + | chr1_2:47268248-47268267 | None:intergenic | 35.0% | |
| !! | CAGCTATATCTTGGTTTTTC+TGG | - | chr1_2:47268246-47268265 | Msa0073550:intron | 35.0% |
| !! | CTATATCTTGGTTTTTCTGG+TGG | - | chr1_2:47268249-47268268 | Msa0073550:intron | 35.0% |
| AACTTAACAGTAAGCTGATC+AGG | + | chr1_2:47268307-47268326 | None:intergenic | 35.0% | |
| CAGCTTACTGTTAAGTTAGT+TGG | - | chr1_2:47268310-47268329 | Msa0073550:intron | 35.0% | |
| GCTGTGAACTTTATTCGATA+CGG | + | chr1_2:47268554-47268573 | None:intergenic | 35.0% | |
| TTTGATTCTGGTGTTTATGC+AGG | - | chr1_2:47268619-47268638 | Msa0073550:intron | 35.0% | |
| TTGCTAGTTATGCATATTGG+TGG | - | chr1_2:47268702-47268721 | Msa0073550:CDS | 35.0% | |
| GGTGGATAAAACAAGCAATA+AGG | - | chr1_2:47268720-47268739 | Msa0073550:CDS | 35.0% | |
| !!! | GCTTCACTCTTTTGAAATGT+CGG | - | chr1_2:47268806-47268825 | Msa0073550:CDS | 35.0% |
| !!! | CTTCACTCTTTTGAAATGTC+GGG | - | chr1_2:47268807-47268826 | Msa0073550:CDS | 35.0% |
| !!! | TTCACTCTTTTGAAATGTCG+GGG | - | chr1_2:47268808-47268827 | Msa0073550:CDS | 35.0% |
| AATTAAGGTAGTTCGTGGAT+TGG | - | chr1_2:47268866-47268885 | Msa0073550:CDS | 35.0% | |
| TTCAATCCCTTCGATTAGAT+TGG | - | chr1_2:47268922-47268941 | Msa0073550:intron | 35.0% | |
| !! | TGTTGTTGTTGACTTGTTAC+TGG | + | chr1_2:47269174-47269193 | None:intergenic | 35.0% |
| !! | TGTCTTGTTTCCGTTTGAAT+TGG | - | chr1_2:47269210-47269229 | Msa0073550:intron | 35.0% |
| TGTTTCCGTTTGAATTGGAT+TGG | - | chr1_2:47269215-47269234 | Msa0073550:intron | 35.0% | |
| ACTGACCAATCCAATTCAAA+CGG | + | chr1_2:47269223-47269242 | None:intergenic | 35.0% | |
| ! | TCGGCTTTTACAGTTTTCAT+TGG | - | chr1_2:47269311-47269330 | Msa0073550:intron | 35.0% |
| !! | CAGTTTTCATTGGATTGGAT+TGG | - | chr1_2:47269321-47269340 | Msa0073550:CDS | 35.0% |
| ! | TTCATTGGATTGGATTGGAT+TGG | - | chr1_2:47269326-47269345 | Msa0073550:CDS | 35.0% |
| TTCTCCTGGAGATAATACAA+GGG | + | chr1_2:47269429-47269448 | None:intergenic | 35.0% | |
| !! | GTTTGTTATATACCTTCTCC+TGG | + | chr1_2:47269443-47269462 | None:intergenic | 35.0% |
| CTTGCTAATTCTTCTTTGGT+TGG | + | chr1_2:47269519-47269538 | None:intergenic | 35.0% | |
| CCTTCTTGCTAATTCTTCTT+TGG | + | chr1_2:47269523-47269542 | None:intergenic | 35.0% | |
| CCAAAGAAGAATTAGCAAGA+AGG | - | chr1_2:47269520-47269539 | Msa0073550:intron | 35.0% | |
| ACAGTGTTCTGCATAGAAAT+TGG | + | chr1_2:47269597-47269616 | None:intergenic | 35.0% | |
| AATTTCTATGCAGAACACTG+TGG | - | chr1_2:47269596-47269615 | Msa0073550:intron | 35.0% | |
| ATTTCTATGCAGAACACTGT+GGG | - | chr1_2:47269597-47269616 | Msa0073550:intron | 35.0% | |
| ATCACAATGTTGTGTCTGTT+TGG | - | chr1_2:47269956-47269975 | Msa0073550:CDS | 35.0% | |
| TCACAATGTTGTGTCTGTTT+GGG | - | chr1_2:47269957-47269976 | Msa0073550:CDS | 35.0% | |
| ! | ACAGGCAAAATTGATTCTAG+GGG | + | chr1_2:47270454-47270473 | None:intergenic | 35.0% |
| ! | GAACAGGCAAAATTGATTCT+AGG | + | chr1_2:47270456-47270475 | None:intergenic | 35.0% |
| GCAGATTAGCAAAAGAAACA+TGG | - | chr1_2:47270505-47270524 | Msa0073550:intron | 35.0% | |
| AAAGCCATATGCCATAGAAA+CGG | + | chr1_2:47270588-47270607 | None:intergenic | 35.0% | |
| ! | TGTTCTTCCTTTGTTTAGAG+GGG | - | chr1_2:47270654-47270673 | Msa0073550:intron | 35.0% |
| AGGATAATTCGGCTAAGATT+TGG | - | chr1_2:47270917-47270936 | Msa0073550:intron | 35.0% | |
| TCAGAAATCGGGGAAATATT+TGG | - | chr1_2:47270968-47270987 | Msa0073550:intron | 35.0% | |
| CTATATAAGCAAGTCTGCAT+AGG | + | chr1_2:47271077-47271096 | None:intergenic | 35.0% | |
| !!! | GAGTGTCACAAACTTTTTTC+TGG | - | chr1_2:47271137-47271156 | Msa0073550:intron | 35.0% |
| AGGTACTACAGTTCAAAAAG+TGG | + | chr1_2:47271163-47271182 | None:intergenic | 35.0% | |
| CACCTTTCAAAACTTGATCT+AGG | + | chr1_2:47271183-47271202 | None:intergenic | 35.0% | |
| ! | TTGATTTTCACATTCCCTCA+TGG | - | chr1_2:47271408-47271427 | Msa0073550:five_prime_UTR | 35.0% |
| CATTTAACATAAGCACCATG+AGG | + | chr1_2:47271426-47271445 | None:intergenic | 35.0% | |
| CATGGTGCTTATGTTAAATG+CGG | - | chr1_2:47271426-47271445 | Msa0073550:five_prime_UTR | 35.0% | |
| !!! | CGTAGCTTATTTTAGACCTC+TGG | + | chr1_2:47264601-47264620 | None:intergenic | 40.0% |
| TGAGTTCTTGGAAGACAAAG+TGG | + | chr1_2:47264870-47264889 | None:intergenic | 40.0% | |
| TGGATTGTATATACACGCTC+TGG | - | chr1_2:47265267-47265286 | Msa0073550:intron | 40.0% | |
| ATGTGCCAGAAAAACTTGAG+CGG | + | chr1_2:47265841-47265860 | None:intergenic | 40.0% | |
| ! | GAACATAAGCATCGTAACCA+TGG | + | chr1_2:47265982-47266001 | None:intergenic | 40.0% |
| TGAATAACTAGTACACCAGG+CGG | + | chr1_2:47266053-47266072 | None:intergenic | 40.0% | |
| AAGAGCAGTGTGATGAGTAT+AGG | - | chr1_2:47266104-47266123 | Msa0073550:intron | 40.0% | |
| AAACACGGATTCTGTGTAAC+TGG | + | chr1_2:47266302-47266321 | None:intergenic | 40.0% | |
| GCACACAAAGGAAAAAGTTG+TGG | + | chr1_2:47266349-47266368 | None:intergenic | 40.0% | |
| !! | AACTTTTTCCTTTGTGTGCG+CGG | - | chr1_2:47266350-47266369 | Msa0073550:intron | 40.0% |
| AATGCAGTAAATGGCTCCTT+AGG | - | chr1_2:47266496-47266515 | Msa0073550:CDS | 40.0% | |
| GTTCAAGAAGAGAATGACAC+CGG | - | chr1_2:47266661-47266680 | Msa0073550:intron | 40.0% | |
| ACTAACAGACTGAACTGACA+TGG | + | chr1_2:47266776-47266795 | None:intergenic | 40.0% | |
| TTTGCGCATCTATAAGGAGA+CGG | + | chr1_2:47266831-47266850 | None:intergenic | 40.0% | |
| AGAACGTTTGCGCATCTATA+AGG | + | chr1_2:47266837-47266856 | None:intergenic | 40.0% | |
| TTCCTCACAAACAGGAGAAA+TGG | - | chr1_2:47266870-47266889 | Msa0073550:intron | 40.0% | |
| ATCCATTTCTCCTGTTTGTG+AGG | + | chr1_2:47266875-47266894 | None:intergenic | 40.0% | |
| TCACAAACAGGAGAAATGGA+TGG | - | chr1_2:47266874-47266893 | Msa0073550:intron | 40.0% | |
| CTATCTGCATGCTGTAAAGT+TGG | + | chr1_2:47266904-47266923 | None:intergenic | 40.0% | |
| TATTAAGTCTTCAGCTACCG+AGG | + | chr1_2:47266965-47266984 | None:intergenic | 40.0% | |
| GAAGGTAGAACTAACCCAAA+AGG | + | chr1_2:47267024-47267043 | None:intergenic | 40.0% | |
| !! | TTGGGTTAGTTCTACCTTCT+TGG | - | chr1_2:47267025-47267044 | Msa0073550:intron | 40.0% |
| GATGTTAGAGTTAGCCAAGA+AGG | + | chr1_2:47267042-47267061 | None:intergenic | 40.0% | |
| ! | TCGAAGTCGTGTTGATCTTA+CGG | + | chr1_2:47267184-47267203 | None:intergenic | 40.0% |
| TCCAGCAAGGTAAGTTTCAT+TGG | + | chr1_2:47267253-47267272 | None:intergenic | 40.0% | |
| ! | CTCTGCAGAAACTTGTTCAA+GGG | + | chr1_2:47267342-47267361 | None:intergenic | 40.0% |
| ! | ACTCTGCAGAAACTTGTTCA+AGG | + | chr1_2:47267343-47267362 | None:intergenic | 40.0% |
| GTCAAAAGTTGCTTCGATTC+AGG | + | chr1_2:47267366-47267385 | None:intergenic | 40.0% | |
| TTCTGAACAAGAGTCTCAGT+TGG | - | chr1_2:47267386-47267405 | Msa0073550:CDS | 40.0% | |
| TCAGTTGGTTGTTCAGATAC+AGG | - | chr1_2:47267401-47267420 | Msa0073550:CDS | 40.0% | |
| GCCTTCAATCTCAATTTGGA+AGG | - | chr1_2:47267527-47267546 | Msa0073550:intron | 40.0% | |
| CCCTTCCAAATTGAGATTGA+AGG | + | chr1_2:47267531-47267550 | None:intergenic | 40.0% | |
| AGTTTAGACGCTTCATCAGT+TGG | - | chr1_2:47267729-47267748 | Msa0073550:intron | 40.0% | |
| GTTTAGACGCTTCATCAGTT+GGG | - | chr1_2:47267730-47267749 | Msa0073550:intron | 40.0% | |
| GTCAAAGACGTAGACACAAT+TGG | - | chr1_2:47267945-47267964 | Msa0073550:intron | 40.0% | |
| ! | ATGGTGTTAGAAAACCAACC+CGG | + | chr1_2:47268034-47268053 | None:intergenic | 40.0% |
| AACACTTAGAAGTCAGACGA+TGG | + | chr1_2:47268211-47268230 | None:intergenic | 40.0% | |
| ! | CACTCTACTATCCTTTTGCA+AGG | + | chr1_2:47268399-47268418 | None:intergenic | 40.0% |
| ATTCTGGTGTTTATGCAGGA+GGG | - | chr1_2:47268623-47268642 | Msa0073550:intron | 40.0% | |
| !! | GTTCGTGGATTGGATTAGAT+CGG | - | chr1_2:47268876-47268895 | Msa0073550:CDS | 40.0% |
| !!! | TGGATTAGATCGGTTTTGAG+AGG | - | chr1_2:47268886-47268905 | Msa0073550:CDS | 40.0% |
| AGAACCCTTGTATTATCTCC+AGG | - | chr1_2:47269422-47269441 | Msa0073550:CDS | 40.0% | |
| CTTCTCCTGGAGATAATACA+AGG | + | chr1_2:47269430-47269449 | None:intergenic | 40.0% | |
| CTTGTATTATCTCCAGGAGA+AGG | - | chr1_2:47269428-47269447 | Msa0073550:intron | 40.0% | |
| !! | CAAACTTAGCAAGGTATTGG+AGG | - | chr1_2:47269458-47269477 | Msa0073550:intron | 40.0% |
| GGAGGCAAAGAAATTGTACA+TGG | - | chr1_2:47269476-47269495 | Msa0073550:intron | 40.0% | |
| GAAGAATTAGCAAGAAGGGT+AGG | - | chr1_2:47269525-47269544 | Msa0073550:intron | 40.0% | |
| TTTCTATGCAGAACACTGTG+GGG | - | chr1_2:47269598-47269617 | Msa0073550:intron | 40.0% | |
| TGAGACAGATACAACTTTCC+AGG | - | chr1_2:47269623-47269642 | Msa0073550:intron | 40.0% | |
| ! | TAAGAAGCTGCACCTTTTCA+AGG | + | chr1_2:47269684-47269703 | None:intergenic | 40.0% |
| TAGCAGCCTAAAGTATGACA+GGG | - | chr1_2:47269905-47269924 | Msa0073550:CDS | 40.0% | |
| !! | GTAGCTTTTGACTCCAAACA+TGG | + | chr1_2:47270098-47270117 | None:intergenic | 40.0% |
| CAAGGTAGAACCAATTCTAG+AGG | - | chr1_2:47270130-47270149 | Msa0073550:intron | 40.0% | |
| CATGTTTAGGTGAAGTCGAT+TGG | + | chr1_2:47270167-47270186 | None:intergenic | 40.0% | |
| CTTCAGTCTAATCACTACTC+CGG | + | chr1_2:47270562-47270581 | None:intergenic | 40.0% | |
| GACTGAAGTTACCGTTTCTA+TGG | - | chr1_2:47270574-47270593 | Msa0073550:intron | 40.0% | |
| GTTACCGTTTCTATGGCATA+TGG | - | chr1_2:47270581-47270600 | Msa0073550:intron | 40.0% | |
| GTTTCGCAACACTCATGTTT+GGG | + | chr1_2:47270841-47270860 | None:intergenic | 40.0% | |
| TGTTTCGCAACACTCATGTT+TGG | + | chr1_2:47270842-47270861 | None:intergenic | 40.0% | |
| TCTTACGCCCTAAAGAAAGA+AGG | - | chr1_2:47270897-47270916 | Msa0073550:intron | 40.0% | |
| !! | AAGCTCAAGAAGTGTCTTGT+TGG | - | chr1_2:47271037-47271056 | Msa0073550:intron | 40.0% |
| !! | AAGAAGTGTCTTGTTGGTCA+AGG | - | chr1_2:47271043-47271062 | Msa0073550:intron | 40.0% |
| !! | ATGAAGGAAGAGTGTTCCAG+TGG | + | chr1_2:47264893-47264912 | None:intergenic | 45.0% |
| !! | AACCTGCAGTTTTGATGCTC+CGG | - | chr1_2:47266005-47266024 | Msa0073550:intron | 45.0% |
| !! | ACTTTTTCCTTTGTGTGCGC+GGG | - | chr1_2:47266351-47266370 | Msa0073550:intron | 45.0% |
| TCTTACAAGTTCTCCAGACG+AGG | + | chr1_2:47266736-47266755 | None:intergenic | 45.0% | |
| CATCTATAAGGAGACGGCTT+AGG | + | chr1_2:47266825-47266844 | None:intergenic | 45.0% | |
| CTGGAAGAGGCTAAACTGAA+GGG | + | chr1_2:47267129-47267148 | None:intergenic | 45.0% | |
| ACTGGAAGAGGCTAAACTGA+AGG | + | chr1_2:47267130-47267149 | None:intergenic | 45.0% | |
| CAGTTTAGCCTCTTCCAGTT+CGG | - | chr1_2:47267131-47267150 | Msa0073550:intron | 45.0% | |
| AAGTAAAGGTTCAGCCGAAC+TGG | + | chr1_2:47267148-47267167 | None:intergenic | 45.0% | |
| AGTTCGGCTGAACCTTTACT+TGG | - | chr1_2:47267147-47267166 | Msa0073550:intron | 45.0% | |
| GCCAATGAAACTTACCTTGC+TGG | - | chr1_2:47267249-47267268 | Msa0073550:intron | 45.0% | |
| TGGTTGTTCAGATACAGGTG+TGG | - | chr1_2:47267406-47267425 | Msa0073550:CDS | 45.0% | |
| ATTTGGAAGGGAACCGACTA+TGG | - | chr1_2:47267540-47267559 | Msa0073550:intron | 45.0% | |
| GCTTAACAGTCGGAAACTGA+AGG | - | chr1_2:47267585-47267604 | Msa0073550:intron | 45.0% | |
| GCTAAAAGTTACCAAGGTCG+TGG | - | chr1_2:47267679-47267698 | Msa0073550:intron | 45.0% | |
| ! | CAGCATTGAGGACTTATTGC+AGG | - | chr1_2:47267705-47267724 | Msa0073550:intron | 45.0% |
| TACCCTTGAACCATAGCACA+GGG | + | chr1_2:47267810-47267829 | None:intergenic | 45.0% | |
| TTACCCTTGAACCATAGCAC+AGG | + | chr1_2:47267811-47267830 | None:intergenic | 45.0% | |
| AGCTGATGCATCCTTGCAAA+AGG | - | chr1_2:47268385-47268404 | Msa0073550:CDS | 45.0% | |
| TGAACACGCACAAATTGTCG+AGG | + | chr1_2:47268462-47268481 | None:intergenic | 45.0% | |
| GATTCTGGTGTTTATGCAGG+AGG | - | chr1_2:47268622-47268641 | Msa0073550:intron | 45.0% | |
| ! | CAACTAAACGTACCGGTAGA+CGG | + | chr1_2:47268775-47268794 | None:intergenic | 45.0% |
| CGAGCACCAATCTAATCGAA+GGG | + | chr1_2:47268931-47268950 | None:intergenic | 45.0% | |
| ACGAGCACCAATCTAATCGA+AGG | + | chr1_2:47268932-47268951 | None:intergenic | 45.0% | |
| CACTCGATTCTTCACTTGCA+TGG | + | chr1_2:47269136-47269155 | None:intergenic | 45.0% | |
| CATGCAAGTGAAGAATCGAG+TGG | - | chr1_2:47269134-47269153 | Msa0073550:CDS | 45.0% | |
| GGTAGGAATTTCACCAGACA+AGG | - | chr1_2:47269542-47269561 | Msa0073550:intron | 45.0% | |
| TTTCACCAGACAAGGTTGAG+AGG | - | chr1_2:47269550-47269569 | Msa0073550:intron | 45.0% | |
| AGTAACCTCTCAACCTTGTC+TGG | + | chr1_2:47269558-47269577 | None:intergenic | 45.0% | |
| AGTAGCTGCGATACAATACC+TGG | + | chr1_2:47269644-47269663 | None:intergenic | 45.0% | |
| CTAGCAGCCTAAAGTATGAC+AGG | - | chr1_2:47269904-47269923 | Msa0073550:CDS | 45.0% | |
| TCCAAGCCCTGTCATACTTT+AGG | + | chr1_2:47269914-47269933 | None:intergenic | 45.0% | |
| GTTGTGTCTGTTTGGGTCAT+CGG | - | chr1_2:47269964-47269983 | Msa0073550:CDS | 45.0% | |
| !! | AATAGCGTTTGGTTCTGCCA+TGG | - | chr1_2:47270006-47270025 | Msa0073550:CDS | 45.0% |
| ! | TCTTCCTTTGTTTAGAGGGG+TGG | - | chr1_2:47270657-47270676 | Msa0073550:intron | 45.0% |
| AGATCCACCCCTCTAAACAA+AGG | + | chr1_2:47270664-47270683 | None:intergenic | 45.0% | |
| ACACTAAACTGCTGCAGTTG+AGG | - | chr1_2:47271209-47271228 | Msa0073550:CDS | 45.0% | |
| TGCAGTTGAGGACAAATCAG+AGG | - | chr1_2:47271221-47271240 | Msa0073550:exon | 45.0% | |
| GCAGTTGAGGACAAATCAGA+GGG | - | chr1_2:47271222-47271241 | Msa0073550:exon | 45.0% | |
| GTCTTCCAAGAACTCACCAC+TGG | - | chr1_2:47264874-47264893 | Msa0073550:three_prime_UTR | 50.0% | |
| GTGTTCCAGTGGTGAGTTCT+TGG | + | chr1_2:47264882-47264901 | None:intergenic | 50.0% | |
| ! | GTGACTGGAGGGTGTATATC+TGG | - | chr1_2:47265413-47265432 | Msa0073550:intron | 50.0% |
| !! | ACCTGCAGTTTTGATGCTCC+GGG | - | chr1_2:47266006-47266025 | Msa0073550:intron | 50.0% |
| TTGATGCTCCGGGAACAAGT+TGG | - | chr1_2:47266016-47266035 | Msa0073550:intron | 50.0% | |
| TGATGCTCCGGGAACAAGTT+GGG | - | chr1_2:47266017-47266036 | Msa0073550:intron | 50.0% | |
| TGCTACCTGATCAGTGTTGC+CGG | + | chr1_2:47266683-47266702 | None:intergenic | 50.0% | |
| ATCAGGTAGCACGTGACTTC+AGG | - | chr1_2:47266692-47266711 | Msa0073550:intron | 50.0% | |
| TCCCTCAAAACAAGCAGCCT+CGG | - | chr1_2:47266945-47266964 | Msa0073550:intron | 50.0% | |
| !!! | ACCGAGGCTGCTTGTTTTGA+GGG | + | chr1_2:47266949-47266968 | None:intergenic | 50.0% |
| !!! | TACCGAGGCTGCTTGTTTTG+AGG | + | chr1_2:47266950-47266969 | None:intergenic | 50.0% |
| TCGGCTGAACCTTTACTTGG+AGG | - | chr1_2:47267150-47267169 | Msa0073550:intron | 50.0% | |
| ! | CTGCAGCATCTTTTCCAGCA+AGG | + | chr1_2:47267266-47267285 | None:intergenic | 50.0% |
| GGAACCGACTATGGCTGAAT+GGG | - | chr1_2:47267549-47267568 | Msa0073550:intron | 50.0% | |
| TCAGCCCATTCAGCCATAGT+CGG | + | chr1_2:47267556-47267575 | None:intergenic | 50.0% | |
| !! | ACTATGGCTGAATGGGCTGA+GGG | - | chr1_2:47267556-47267575 | Msa0073550:intron | 50.0% |
| ! | CTGAAGGCACAACTTCGTTG+TGG | - | chr1_2:47267601-47267620 | Msa0073550:intron | 50.0% |
| GACGCTTCATCAGTTGGGTA+TGG | - | chr1_2:47267735-47267754 | Msa0073550:intron | 50.0% | |
| ACCCTTGAACCATAGCACAG+GGG | + | chr1_2:47267809-47267828 | None:intergenic | 50.0% | |
| ! | TTTATGCAGGAGGGAAGCAC+AGG | - | chr1_2:47268632-47268651 | Msa0073550:intron | 50.0% |
| TTCCAGGACAATCCGTCTAC+CGG | - | chr1_2:47268760-47268779 | Msa0073550:CDS | 50.0% | |
| !! | GAAGCTGCACCTTTTCAAGG+TGG | + | chr1_2:47269681-47269700 | None:intergenic | 50.0% |
| GCCTAAAGTATGACAGGGCT+TGG | - | chr1_2:47269910-47269929 | Msa0073550:CDS | 50.0% | |
| ! | TAACTGACGGACCCTTTCTC+TGG | + | chr1_2:47270999-47271018 | None:intergenic | 50.0% |
| ! | TCTTGAGCTTGTAGAGTGCC+CGG | + | chr1_2:47271027-47271046 | None:intergenic | 50.0% |
| GGACAAATCAGAGGGCCTAA+TGG | - | chr1_2:47271230-47271249 | Msa0073550:exon | 50.0% | |
| ! | TCCCGGAGCATCAAAACTGC+AGG | + | chr1_2:47266010-47266029 | None:intergenic | 55.0% |
| ! | CTGTAGGCCCAACTTGTTCC+CGG | + | chr1_2:47266027-47266046 | None:intergenic | 55.0% |
| TGACACCGGCAACACTGATC+AGG | - | chr1_2:47266675-47266694 | Msa0073550:intron | 55.0% | |
| AGGTTCAGCCGAACTGGAAG+AGG | + | chr1_2:47267142-47267161 | None:intergenic | 55.0% | |
| GGGAACCGACTATGGCTGAA+TGG | - | chr1_2:47267548-47267567 | Msa0073550:intron | 55.0% | |
| !! | GACTATGGCTGAATGGGCTG+AGG | - | chr1_2:47267555-47267574 | Msa0073550:intron | 55.0% |
| AGGGTGCAGGGCTTAACAGT+CGG | - | chr1_2:47267575-47267594 | Msa0073550:intron | 55.0% | |
| CAATGCTGAGACCACGACCT+TGG | + | chr1_2:47267693-47267712 | None:intergenic | 55.0% | |
| AGGTCGTGGTCTCAGCATTG+AGG | - | chr1_2:47267693-47267712 | Msa0073550:intron | 55.0% | |
| CCCTTGAACCATAGCACAGG+GGG | + | chr1_2:47267808-47267827 | None:intergenic | 55.0% | |
| CCCCCTGTGCTATGGTTCAA+GGG | - | chr1_2:47267805-47267824 | Msa0073550:intron | 55.0% | |
| !! | TACCGGTAGACGGATTGTCC+TGG | + | chr1_2:47268765-47268784 | None:intergenic | 55.0% |
| TTCCGCAGCTGTCAGCCATT+AGG | + | chr1_2:47271248-47271267 | None:intergenic | 55.0% | |
| GTACACCAGGCGGTGACTGT+AGG | + | chr1_2:47266043-47266062 | None:intergenic | 60.0% | |
| ACTCACACCCGCGCACACAA+AGG | + | chr1_2:47266361-47266380 | None:intergenic | 60.0% | |
| CCAGACGAGGCAAGAGATGC+AGG | + | chr1_2:47266723-47266742 | None:intergenic | 60.0% | |
| CCTGCATCTCTTGCCTCGTC+TGG | - | chr1_2:47266720-47266739 | Msa0073550:intron | 60.0% | |
| !! | CTGAATGGGCTGAGGGTGCA+GGG | - | chr1_2:47267563-47267582 | Msa0073550:intron | 60.0% |
| ! | CGAGCGGCCTGCCCAATTTT+AGG | + | chr1_2:47267772-47267791 | None:intergenic | 60.0% |
| GGCTATAGCCCCCTGTGCTA+TGG | - | chr1_2:47267797-47267816 | Msa0073550:intron | 60.0% | |
| GCCCCCTGTGCTATGGTTCA+AGG | - | chr1_2:47267804-47267823 | Msa0073550:intron | 60.0% | |
| GGGTCCGTCAGTTAGAGAGC+CGG | - | chr1_2:47271005-47271024 | Msa0073550:intron | 60.0% | |
| GGTCCGTCAGTTAGAGAGCC+GGG | - | chr1_2:47271006-47271025 | Msa0073550:intron | 60.0% | |
| GTGCCCGGCTCTCTAACTGA+CGG | + | chr1_2:47271012-47271031 | None:intergenic | 60.0% | |
| GGCCTAATGGCTGACAGCTG+CGG | - | chr1_2:47271243-47271262 | Msa0073550:five_prime_UTR | 60.0% | |
| TTGGGCCTACAGTCACCGCC+TGG | - | chr1_2:47266035-47266054 | Msa0073550:intron | 65.0% | |
| !! | GCTGAATGGGCTGAGGGTGC+AGG | - | chr1_2:47267562-47267581 | Msa0073550:intron | 65.0% |
| AATTGGGCAGGCCGCTCGAG+CGG | - | chr1_2:47267774-47267793 | Msa0073550:intron | 65.0% | |
| ATTGGGCAGGCCGCTCGAGC+GGG | - | chr1_2:47267775-47267794 | Msa0073550:intron | 70.0% | |
| GGGCTATAGCCCCGCTCGAG+CGG | + | chr1_2:47267788-47267807 | None:intergenic | 70.0% | |
| TTGGGCAGGCCGCTCGAGCG+GGG | - | chr1_2:47267776-47267795 | Msa0073550:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 47264593 | 47271475 | 47264593 | ID=Msa0073550;Name=Msa0073550 |
| chr1_2 | mRNA | 47264593 | 47271475 | 47264593 | ID=Msa0073550-mRNA-1;Parent=Msa0073550;Name=Msa0073550-mRNA-1;_AED=0.06;_eAED=0.06;_QI=241|1|1|1|0.87|0.88|9|379|561 |
| chr1_2 | exon | 47264593 | 47265259 | 47264593 | ID=Msa0073550-mRNA-1:exon:14373;Parent=Msa0073550-mRNA-1 |
| chr1_2 | exon | 47266424 | 47266624 | 47266424 | ID=Msa0073550-mRNA-1:exon:14372;Parent=Msa0073550-mRNA-1 |
| chr1_2 | exon | 47267287 | 47267427 | 47267287 | ID=Msa0073550-mRNA-1:exon:14371;Parent=Msa0073550-mRNA-1 |
| chr1_2 | exon | 47268342 | 47268572 | 47268342 | ID=Msa0073550-mRNA-1:exon:14370;Parent=Msa0073550-mRNA-1 |
| chr1_2 | exon | 47268646 | 47268934 | 47268646 | ID=Msa0073550-mRNA-1:exon:14369;Parent=Msa0073550-mRNA-1 |
| chr1_2 | exon | 47269040 | 47269204 | 47269040 | ID=Msa0073550-mRNA-1:exon:14368;Parent=Msa0073550-mRNA-1 |
| chr1_2 | exon | 47269319 | 47269443 | 47269319 | ID=Msa0073550-mRNA-1:exon:14367;Parent=Msa0073550-mRNA-1 |
| chr1_2 | exon | 47269903 | 47270054 | 47269903 | ID=Msa0073550-mRNA-1:exon:14366;Parent=Msa0073550-mRNA-1 |
| chr1_2 | exon | 47271141 | 47271475 | 47271141 | ID=Msa0073550-mRNA-1:exon:14365;Parent=Msa0073550-mRNA-1 |
| chr1_2 | five_prime_UTR | 47271235 | 47271475 | 47271235 | ID=Msa0073550-mRNA-1:five_prime_utr;Parent=Msa0073550-mRNA-1 |
| chr1_2 | CDS | 47271141 | 47271234 | 47271141 | ID=Msa0073550-mRNA-1:cds;Parent=Msa0073550-mRNA-1 |
| chr1_2 | CDS | 47269903 | 47270054 | 47269903 | ID=Msa0073550-mRNA-1:cds;Parent=Msa0073550-mRNA-1 |
| chr1_2 | CDS | 47269319 | 47269443 | 47269319 | ID=Msa0073550-mRNA-1:cds;Parent=Msa0073550-mRNA-1 |
| chr1_2 | CDS | 47269040 | 47269204 | 47269040 | ID=Msa0073550-mRNA-1:cds;Parent=Msa0073550-mRNA-1 |
| chr1_2 | CDS | 47268646 | 47268934 | 47268646 | ID=Msa0073550-mRNA-1:cds;Parent=Msa0073550-mRNA-1 |
| chr1_2 | CDS | 47268342 | 47268572 | 47268342 | ID=Msa0073550-mRNA-1:cds;Parent=Msa0073550-mRNA-1 |
| chr1_2 | CDS | 47267287 | 47267427 | 47267287 | ID=Msa0073550-mRNA-1:cds;Parent=Msa0073550-mRNA-1 |
| chr1_2 | CDS | 47266424 | 47266624 | 47266424 | ID=Msa0073550-mRNA-1:cds;Parent=Msa0073550-mRNA-1 |
| chr1_2 | CDS | 47264972 | 47265259 | 47264972 | ID=Msa0073550-mRNA-1:cds;Parent=Msa0073550-mRNA-1 |
| chr1_2 | three_prime_UTR | 47264593 | 47264971 | 47264593 | ID=Msa0073550-mRNA-1:three_prime_utr;Parent=Msa0073550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
