AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0704990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0704990 MtrunA17_Chr8g0383291 89.871 464 7 1 2 425 66 529 0.0 853
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0704990 AT2G21860.1 65.688 443 124 2 3 417 69 511 0.0 622

Find 115 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATTTGGATCATTAATT+TGG 0.084716 4_4:+77530710 None:intergenic
TTGGTATGAACCGGTGTTTC+AGG 0.206928 4_4:-77531115 Msa0704990:CDS
AATTCAGAGTGTTACCATTT+TGG 0.211658 4_4:-77533716 Msa0704990:five_prime_UTR
ATTCACACATTCATCCAATT+TGG 0.214697 4_4:+77530697 None:intergenic
GAAAAGCAAAAGGGTCATTT+TGG 0.227489 4_4:-77531134 Msa0704990:CDS
CTAGATTTGAAGAACAAATT+AGG 0.233092 4_4:-77531773 Msa0704990:CDS
GAAGTAAAGGGAAGCATATT+TGG 0.240241 4_4:-77531731 Msa0704990:CDS
CCCTCTCAACTCTGCTTCTT+GGG 0.260895 4_4:-77533409 Msa0704990:CDS
GCCCTCTCAACTCTGCTTCT+TGG 0.274661 4_4:-77533410 Msa0704990:CDS
ATATGGAGAAGAATAGTAAA+AGG 0.275566 4_4:+77533571 None:intergenic
AAGAATAGTAAAAGGGAAAA+AGG 0.282457 4_4:+77533579 None:intergenic
TATTTCAGTGTATTAGATAA+TGG 0.312534 4_4:-77531015 Msa0704990:CDS
TCATGCATTGATCCTCCATT+AGG 0.313626 4_4:-77530766 Msa0704990:CDS
CAAACGAAGAGTCGGTTAAC+TGG 0.314699 4_4:-77531847 Msa0704990:CDS
TCCAAATTAATGATCCAAAT+TGG 0.322012 4_4:-77530711 Msa0704990:CDS
TTCGTCCTCTCTCTTTCATT+TGG 0.322166 4_4:+77530853 None:intergenic
TGGAGCTGGCGCGTTGTAGC+GGG 0.328165 4_4:-77531210 Msa0704990:CDS
GAGTTATTTCAAATGAGTTT+TGG 0.328583 4_4:-77530993 Msa0704990:CDS
GCTGCAGGGCAGTCTTATAC+TGG 0.330058 4_4:-77530907 Msa0704990:CDS
TTCATACGAAAGTGCGAATC+TGG 0.340979 4_4:-77531394 Msa0704990:CDS
TTCTCCTCCTCCATACCATT+TGG 0.346423 4_4:+77531076 None:intergenic
CATGCATTGATCCTCCATTA+GGG 0.358125 4_4:-77530765 Msa0704990:CDS
TCAACCATTGGAGGCACATA+TGG 0.360449 4_4:+77531303 None:intergenic
TATGGAGGAGGAGAAAATAT+AGG 0.367865 4_4:-77531068 Msa0704990:CDS
TCATTTGGATATGCTCCATC+TGG 0.369299 4_4:+77530868 None:intergenic
GTTAAGAGAGGTAAGGTATA+TGG 0.378832 4_4:-77531045 Msa0704990:CDS
GATGATGGAGGAAAGCAATA+AGG 0.394420 4_4:+77533510 None:intergenic
GGAGGCACATATGGCTTAGT+AGG 0.394962 4_4:+77531312 None:intergenic
TGGGGTTTGTTCCACTATCA+TGG 0.398219 4_4:-77530940 Msa0704990:CDS
ATGGAGGAGGAGAAAATATA+GGG 0.404522 4_4:-77531067 Msa0704990:CDS
TGTAGCTAATGACCTTAGTT+GGG 0.414877 4_4:-77530959 Msa0704990:CDS
TAATTACATACTTGATCAAC+AGG 0.415438 4_4:+77531429 None:intergenic
AGAGATTGAGAATGAGCATA+TGG 0.418966 4_4:+77533554 None:intergenic
TCAGGTACTTAATTGCTTGT+TGG 0.420248 4_4:-77531496 Msa0704990:CDS
TTCTATAGAGGAAAAGCAAA+AGG 0.423876 4_4:-77531144 Msa0704990:CDS
AATGGAATAAGAAACCAAAA+TGG 0.428123 4_4:+77533702 None:intergenic
ATTGCAGAAGATTTGTTTGT+TGG 0.430954 4_4:-77531252 Msa0704990:CDS
GTTGAAGAACTGCGGTCGTC+AGG 0.432171 4_4:-77531514 Msa0704990:CDS
GAGATTCACAATGAAGTAAA+GGG 0.435424 4_4:-77531743 Msa0704990:CDS
GAACCCTCTGGAGTCCCTAA+TGG 0.441951 4_4:+77530751 None:intergenic
ATGGAGCTGGCGCGTTGTAG+CGG 0.444125 4_4:-77531211 Msa0704990:CDS
TATGGAGAAGAATAGTAAAA+GGG 0.449175 4_4:+77533572 None:intergenic
ATGTAGCTAATGACCTTAGT+TGG 0.456001 4_4:-77530960 Msa0704990:CDS
GAGTCCACGGTTGTTGATGA+TGG 0.456847 4_4:+77533495 None:intergenic
CATGGAGCTGCTAAAGCTGC+AGG 0.462494 4_4:-77530922 Msa0704990:CDS
CAGCCTTCAGTAATTCTCTC+TGG 0.462625 4_4:+77531894 None:intergenic
CCTCCAATGGTTGAATTTCG+CGG 0.464187 4_4:-77531294 Msa0704990:CDS
CTTTAGCAGCTCCATGATAG+TGG 0.464240 4_4:+77530929 None:intergenic
TGAGATTCACAATGAAGTAA+AGG 0.466183 4_4:-77531744 Msa0704990:CDS
TGCCCGCGAAATTCAACCAT+TGG 0.472472 4_4:+77531291 None:intergenic
CTGTAACACGCAAAGCGAAA+AGG 0.472645 4_4:+77531368 None:intergenic
CTCCAATGGTTGAATTTCGC+GGG 0.485968 4_4:-77531293 Msa0704990:CDS
CTGCAGGGCAGTCTTATACT+GGG 0.487163 4_4:-77530906 Msa0704990:CDS
GAATGAAAACTTGAACCCTC+TGG 0.494780 4_4:+77530739 None:intergenic
CATTTGAAGGCCAAATGGTA+TGG 0.506239 4_4:-77531086 Msa0704990:CDS
CCCAAGAAGCAGAGTTGAGA+GGG 0.506484 4_4:+77533409 None:intergenic
AGAAATGTGAAATCAAAGAG+TGG 0.510895 4_4:-77530813 Msa0704990:CDS
GCAGTACTTGTTAGTCCAGA+TGG 0.511090 4_4:-77530883 Msa0704990:CDS
CAGAAGATTTGTTTGTTGGT+TGG 0.512517 4_4:-77531248 Msa0704990:CDS
CAAGGGAATTGATCATATGC+TGG 0.512768 4_4:+77531180 None:intergenic
AGATTGAAATGGGTTGATGA+AGG 0.515244 4_4:-77531968 Msa0704990:CDS
CAATATCAGCTATTCTATAG+AGG 0.515759 4_4:-77531156 Msa0704990:CDS
TAGAGAGTTTGCAATGGAGC+TGG 0.516155 4_4:-77531224 Msa0704990:CDS
CAGAGAGAATTACTGAAGGC+TGG 0.524861 4_4:-77531893 Msa0704990:CDS
AGTGGAACAAACCCCAACTA+AGG 0.536966 4_4:+77530947 None:intergenic
TTCAGTAATTCTCTCTGGAG+TGG 0.537115 4_4:+77531899 None:intergenic
AGAAAATATAGGGTTAAGAG+AGG 0.541135 4_4:-77531057 Msa0704990:CDS
GTGAGGATGGTGGCTATAGT+TGG 0.542421 4_4:-77533447 Msa0704990:CDS
TTTCGTATGAAGCGATGCAT+CGG 0.549436 4_4:+77531406 None:intergenic
TGGGAAGATGAAGTTGCAGT+TGG 0.559282 4_4:+77533666 None:intergenic
ATATAGGGTTAAGAGAGGTA+AGG 0.560870 4_4:-77531052 Msa0704990:CDS
GATTGAAATGGGTTGATGAA+GGG 0.563961 4_4:-77531967 Msa0704990:CDS
GTAGCTAATGACCTTAGTTG+GGG 0.568269 4_4:-77530958 Msa0704990:CDS
GGATGAGCCTCCGGTGAGGA+TGG 0.570432 4_4:-77533460 Msa0704990:CDS
AAGATGAAGTTGCAGTTGGA+AGG 0.572125 4_4:+77533670 None:intergenic
TGCAGGGCAGTCTTATACTG+GGG 0.572559 4_4:-77530905 Msa0704990:CDS
TCTATAGAGGAAAAGCAAAA+GGG 0.577392 4_4:-77531143 Msa0704990:CDS
GTTGGAAGGACATCTTAGAA+TGG 0.578244 4_4:+77533684 None:intergenic
GGAGCTGGCGCGTTGTAGCG+GGG 0.580346 4_4:-77531209 Msa0704990:CDS
GAAATGTGAAATCAAAGAGT+GGG 0.580566 4_4:-77530812 Msa0704990:CDS
TGTGACGATGGATGAGCCTC+CGG 0.581185 4_4:-77533469 Msa0704990:exon
ATGGTGGCTATAGTTGGCCA+TGG 0.581673 4_4:-77533441 Msa0704990:CDS
CGCTGTTACAAACGAAGAGT+CGG 0.585099 4_4:-77531855 Msa0704990:CDS
CCGCGAAATTCAACCATTGG+AGG 0.586866 4_4:+77531294 None:intergenic
ATGGAGCTGCTAAAGCTGCA+GGG 0.587852 4_4:-77530921 Msa0704990:CDS
AGGAAAGCAATAAGGAGTAG+TGG 0.591834 4_4:+77533518 None:intergenic
GAAAAGTAGGTTGCATAGCT+CGG 0.592376 4_4:-77533779 None:intergenic
GAGGCACATATGGCTTAGTA+GGG 0.597220 4_4:+77531313 None:intergenic
AAGGCCAAATGGTATGGAGG+AGG 0.599053 4_4:-77531080 Msa0704990:CDS
TAAGCCATATGTGCCTCCAA+TGG 0.599741 4_4:-77531307 Msa0704990:CDS
ACTATAGCCACCATCCTCAC+CGG 0.601762 4_4:+77533450 None:intergenic
TCCCAAGAAGCAGAGTTGAG+AGG 0.610361 4_4:+77533408 None:intergenic
AACTGTATGTTGAAGAACTG+CGG 0.613073 4_4:-77531522 Msa0704990:CDS
TGAGAGGGCTGACAGCTCCA+TGG 0.617554 4_4:+77533424 None:intergenic
TGAGTTTGAAGCACATGTGT+GGG 0.620501 4_4:+77533647 None:intergenic
GATTTGAAGAACAAATTAGG+AGG 0.621101 4_4:-77531770 Msa0704990:CDS
CATCGTCACATCAGAGTCCA+CGG 0.621255 4_4:+77533482 None:intergenic
CCCTCTGGAGTCCCTAATGG+AGG 0.622618 4_4:+77530754 None:intergenic
GTTGGTTAGAGAGTTTGCAA+TGG 0.622715 4_4:-77531230 Msa0704990:CDS
TGAGCCTCCGGTGAGGATGG+TGG 0.634453 4_4:-77533457 Msa0704990:CDS
ATTAGATTGAATGCACTCGT+CGG 0.634851 4_4:+77531925 None:intergenic
TTGAAGGCCAAATGGTATGG+AGG 0.635847 4_4:-77531083 Msa0704990:CDS
TCCACGGTTGTTGATGATGG+AGG 0.639105 4_4:+77533498 None:intergenic
TTGAGTTTGAAGCACATGTG+TGG 0.641740 4_4:+77533646 None:intergenic
CATATCCAAATGAAAGAGAG+AGG 0.645957 4_4:-77530858 Msa0704990:CDS
AGAATAGCTGATATTGACAA+GGG 0.651578 4_4:+77531163 None:intergenic
CCTCCATTAGGGACTCCAGA+GGG 0.662863 4_4:-77530754 Msa0704990:CDS
TAGAATAGCTGATATTGACA+AGG 0.664980 4_4:+77531162 None:intergenic
CGTGGACTCTGATGTGACGA+TGG 0.665005 4_4:-77533481 Msa0704990:exon
TCCTCCATCATCAACAACCG+TGG 0.665964 4_4:-77533499 Msa0704990:five_prime_UTR
TCCTCCATTAGGGACTCCAG+AGG 0.675079 4_4:-77530755 Msa0704990:CDS
ATAGCTCGGTAAGCAGCGAG+TGG 0.680601 4_4:-77533765 Msa0704990:five_prime_UTR
CGATGGATGAGCCTCCGGTG+AGG 0.688939 4_4:-77533464 Msa0704990:CDS
ACTCCAGAGAGAATTACTGA+AGG 0.689331 4_4:-77531897 Msa0704990:CDS
ATAGCCACCATCCTCACCGG+AGG 0.702930 4_4:+77533453 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATAAAAGAAATATGT+GGG + chr4_4:77532007-77532026 None:intergenic 10.0%
!! TTATATCCTTATATAAAAAC+AGG + chr4_4:77531153-77531172 None:intergenic 15.0%
!! ATTTCAATATAAAAATAGCT+TGG + chr4_4:77531209-77531228 None:intergenic 15.0%
!!! TTATTTTATTTATCCAAACA+GGG + chr4_4:77531282-77531301 None:intergenic 15.0%
!!! TTTATTTTATTTATCCAAAC+AGG + chr4_4:77531283-77531302 None:intergenic 15.0%
!!! GATCTTTTTTCTTTATTTAT+AGG - chr4_4:77531899-77531918 Msa0704990:CDS 15.0%
!! TTATGATATAGTAGTTAATT+AGG + chr4_4:77531960-77531979 None:intergenic 15.0%
!! GATTAAATAAAAGAAATATG+TGG + chr4_4:77532008-77532027 None:intergenic 15.0%
!!! CTATAACCTGTTTTTATATA+AGG - chr4_4:77531144-77531163 Msa0704990:CDS 20.0%
!! ACAACTTATATGAAAACATT+TGG + chr4_4:77531308-77531327 None:intergenic 20.0%
!! TATAACTTTATTGAGTTTAC+GGG + chr4_4:77531467-77531486 None:intergenic 20.0%
!! GTATAACTTTATTGAGTTTA+CGG + chr4_4:77531468-77531487 None:intergenic 20.0%
!! ACTCAATAAAGTTATACATA+AGG - chr4_4:77531471-77531490 Msa0704990:CDS 20.0%
!! ATATAGTAGTTAATTAGGTT+GGG + chr4_4:77531955-77531974 None:intergenic 20.0%
!!! TTATTTCTTTCAAATTTGCT+TGG - chr4_4:77532061-77532080 Msa0704990:intron 20.0%
!!! TTTGACTATTTTCTTACTTA+TGG - chr4_4:77532177-77532196 Msa0704990:intron 20.0%
!!! TTGACTATTTTCTTACTTAT+GGG - chr4_4:77532178-77532197 Msa0704990:intron 20.0%
!! AAGCATATTTGGAAAAATAT+TGG - chr4_4:77532750-77532769 Msa0704990:intron 20.0%
!! AGCATATTTGGAAAAATATT+GGG - chr4_4:77532751-77532770 Msa0704990:intron 20.0%
!! TACTAATCAATGCTTATATA+AGG - chr4_4:77532877-77532896 Msa0704990:intron 20.0%
!! TATTTCAGTGTATTAGATAA+TGG - chr4_4:77533455-77533474 Msa0704990:CDS 20.0%
! AATGGAATAAGAAACCAAAA+TGG + chr4_4:77530771-77530790 None:intergenic 25.0%
! AAGAATAGTAAAAGGGAAAA+AGG + chr4_4:77530894-77530913 None:intergenic 25.0%
! TATGGAGAAGAATAGTAAAA+GGG + chr4_4:77530901-77530920 None:intergenic 25.0%
! ATATGGAGAAGAATAGTAAA+AGG + chr4_4:77530902-77530921 None:intergenic 25.0%
! ACATGAAACTCATTTGAATT+TGG + chr4_4:77531501-77531520 None:intergenic 25.0%
!! AAATTTATTGTAGTTTGTGG+TGG - chr4_4:77531582-77531601 Msa0704990:intron 25.0%
! TTACATACTTTAGCAAATCA+TGG - chr4_4:77531677-77531696 Msa0704990:intron 25.0%
! AGTTAATTCTCAAATCTTTG+AGG + chr4_4:77531792-77531811 None:intergenic 25.0%
! TTCTACGTTAATAAACATCT+TGG + chr4_4:77531878-77531897 None:intergenic 25.0%
! AAGATGTTTATTAACGTAGA+AGG - chr4_4:77531877-77531896 Msa0704990:CDS 25.0%
! GATATAGTAGTTAATTAGGT+TGG + chr4_4:77531956-77531975 None:intergenic 25.0%
!!! AATGATTTTACTGGCTAAAA+CGG + chr4_4:77531983-77532002 None:intergenic 25.0%
!!! TTTAAGTTCTAAAGTGCTAA+TGG - chr4_4:77532251-77532270 Msa0704990:intron 25.0%
!!! AACAAGTTGAAATTAGCTTT+TGG + chr4_4:77532314-77532333 None:intergenic 25.0%
! GTTGTAAAGCTATCATTTAA+AGG - chr4_4:77532331-77532350 Msa0704990:intron 25.0%
! TGATTAAAGGGAACATTAAA+TGG + chr4_4:77532475-77532494 None:intergenic 25.0%
! ATTTAATGTTCCCTTTAATC+AGG - chr4_4:77532474-77532493 Msa0704990:intron 25.0%
!! AATCTTTTTGCCTGATTAAA+GGG + chr4_4:77532487-77532506 None:intergenic 25.0%
! CTAGATTTGAAGAACAAATT+AGG - chr4_4:77532697-77532716 Msa0704990:intron 25.0%
! GCATATTTGGAAAAATATTG+GGG - chr4_4:77532752-77532771 Msa0704990:intron 25.0%
!!! AGTCTTTGTTTTATCTAACT+CGG + chr4_4:77532782-77532801 None:intergenic 25.0%
! TAATTACATACTTGATCAAC+AGG + chr4_4:77533044-77533063 None:intergenic 25.0%
! GAAAAATAATTGTCTTGAGT+TGG - chr4_4:77533124-77533143 Msa0704990:intron 25.0%
!! TTTCAGGTAAAAACATTTGA+AGG - chr4_4:77533371-77533390 Msa0704990:intron 25.0%
!!! GAGTTATTTCAAATGAGTTT+TGG - chr4_4:77533477-77533496 Msa0704990:exon 25.0%
! TCCAAATTAATGATCCAAAT+TGG - chr4_4:77533759-77533778 Msa0704990:five_prime_UTR 25.0%
! TCCAATTTGGATCATTAATT+TGG + chr4_4:77533763-77533782 None:intergenic 25.0%
!! AATTCAGAGTGTTACCATTT+TGG - chr4_4:77530754-77530773 Msa0704990:CDS 30.0%
AGTAAGCTGAAAACAACTTA+TGG - chr4_4:77531365-77531384 Msa0704990:CDS 30.0%
AACATATGCATATAGTGAGA+TGG - chr4_4:77531558-77531577 Msa0704990:CDS 30.0%
ACATATGCATATAGTGAGAT+GGG - chr4_4:77531559-77531578 Msa0704990:CDS 30.0%
GGGAAATTTATTGTAGTTTG+TGG - chr4_4:77531579-77531598 Msa0704990:intron 30.0%
GAAGGCAATAATATAATGTG+CGG - chr4_4:77531615-77531634 Msa0704990:intron 30.0%
GCGGATATAACATTAAAATC+TGG - chr4_4:77531634-77531653 Msa0704990:intron 30.0%
TTGGAATAGCATGATTCATA+AGG - chr4_4:77531706-77531725 Msa0704990:intron 30.0%
! TATGTGGGTAATGATTTTAC+TGG + chr4_4:77531992-77532011 None:intergenic 30.0%
!! TGTCATAATAGTTTTGCTAG+AGG - chr4_4:77532148-77532167 Msa0704990:intron 30.0%
!! GTCATAATAGTTTTGCTAGA+GGG - chr4_4:77532149-77532168 Msa0704990:intron 30.0%
ATTGAGAAGCTTATCCAAAA+AGG - chr4_4:77532408-77532427 Msa0704990:intron 30.0%
TCCAAAAAGGTTCATACTAA+CGG - chr4_4:77532421-77532440 Msa0704990:intron 30.0%
! CAATCTTTTTGCCTGATTAA+AGG + chr4_4:77532488-77532507 None:intergenic 30.0%
ATCAGGCAAAAAGATTGAAA+TGG - chr4_4:77532491-77532510 Msa0704990:intron 30.0%
TCAGGCAAAAAGATTGAAAT+GGG - chr4_4:77532492-77532511 Msa0704990:intron 30.0%
GATTTGAAGAACAAATTAGG+AGG - chr4_4:77532700-77532719 Msa0704990:intron 30.0%
TGAGATTCACAATGAAGTAA+AGG - chr4_4:77532726-77532745 Msa0704990:intron 30.0%
GAGATTCACAATGAAGTAAA+GGG - chr4_4:77532727-77532746 Msa0704990:intron 30.0%
!! AAGTTTTTCAATACTGGAAC+TGG + chr4_4:77532903-77532922 None:intergenic 30.0%
ATTGAAAAACTTGAGAGCAA+AGG - chr4_4:77532911-77532930 Msa0704990:intron 30.0%
TTGAAAAACTTGAGAGCAAA+GGG - chr4_4:77532912-77532931 Msa0704990:intron 30.0%
! TGAAGAGCTTTTCTACAATT+AGG + chr4_4:77533002-77533021 None:intergenic 30.0%
! ATTGCAGAAGATTTGTTTGT+TGG - chr4_4:77533218-77533237 Msa0704990:intron 30.0%
AGAATAGCTGATATTGACAA+GGG + chr4_4:77533310-77533329 None:intergenic 30.0%
TAGAATAGCTGATATTGACA+AGG + chr4_4:77533311-77533330 None:intergenic 30.0%
CAATATCAGCTATTCTATAG+AGG - chr4_4:77533314-77533333 Msa0704990:intron 30.0%
TTCTATAGAGGAAAAGCAAA+AGG - chr4_4:77533326-77533345 Msa0704990:intron 30.0%
TCTATAGAGGAAAAGCAAAA+GGG - chr4_4:77533327-77533346 Msa0704990:intron 30.0%
!! AATGTTTTTACCTGAAACAC+CGG + chr4_4:77533368-77533387 None:intergenic 30.0%
AAAAACATTTGAAGGCCAAA+TGG - chr4_4:77533379-77533398 Msa0704990:intron 30.0%
AGAAAATATAGGGTTAAGAG+AGG - chr4_4:77533413-77533432 Msa0704990:CDS 30.0%
!!! AAATGAGTTTTGGACAATTG+TGG - chr4_4:77533487-77533506 Msa0704990:five_prime_UTR 30.0%
AGAAATGTGAAATCAAAGAG+TGG - chr4_4:77533657-77533676 Msa0704990:five_prime_UTR 30.0%
GAAATGTGAAATCAAAGAGT+GGG - chr4_4:77533658-77533677 Msa0704990:five_prime_UTR 30.0%
AGAGATTGAGAATGAGCATA+TGG + chr4_4:77530919-77530938 None:intergenic 35.0%
! TTGAGTTTACGGGTATGTTT+TGG + chr4_4:77531457-77531476 None:intergenic 35.0%
!! GTAATCCAAGAGTGCTATTT+AGG - chr4_4:77531530-77531549 Msa0704990:CDS 35.0%
! TAGCAAATCATGGATTGTGT+TGG - chr4_4:77531687-77531706 Msa0704990:intron 35.0%
CATGATTCATAAGGAAACAC+AGG - chr4_4:77531715-77531734 Msa0704990:CDS 35.0%
AAAATCCAAAGACATGTTGC+AGG + chr4_4:77531849-77531868 None:intergenic 35.0%
! TCCGTTAGTATGAACCTTTT+TGG + chr4_4:77532425-77532444 None:intergenic 35.0%
!! AGATTGAAATGGGTTGATGA+AGG - chr4_4:77532502-77532521 Msa0704990:intron 35.0%
!! GATTGAAATGGGTTGATGAA+GGG - chr4_4:77532503-77532522 Msa0704990:intron 35.0%
ATTAGATTGAATGCACTCGT+CGG + chr4_4:77532548-77532567 None:intergenic 35.0%
! GAAGTAAAGGGAAGCATATT+TGG - chr4_4:77532739-77532758 Msa0704990:intron 35.0%
!! GCTCTCAAGTTTTTCAATAC+TGG + chr4_4:77532909-77532928 None:intergenic 35.0%
AACTGTATGTTGAAGAACTG+CGG - chr4_4:77532948-77532967 Msa0704990:intron 35.0%
TCAGGTACTTAATTGCTTGT+TGG - chr4_4:77532974-77532993 Msa0704990:intron 35.0%
! CAGAAGATTTGTTTGTTGGT+TGG - chr4_4:77533222-77533241 Msa0704990:intron 35.0%
! GAAAAGCAAAAGGGTCATTT+TGG - chr4_4:77533336-77533355 Msa0704990:intron 35.0%
TATGGAGGAGGAGAAAATAT+AGG - chr4_4:77533402-77533421 Msa0704990:CDS 35.0%
ATGGAGGAGGAGAAAATATA+GGG - chr4_4:77533403-77533422 Msa0704990:CDS 35.0%
ATATAGGGTTAAGAGAGGTA+AGG - chr4_4:77533418-77533437 Msa0704990:CDS 35.0%
GTTAAGAGAGGTAAGGTATA+TGG - chr4_4:77533425-77533444 Msa0704990:CDS 35.0%
ATGTAGCTAATGACCTTAGT+TGG - chr4_4:77533510-77533529 Msa0704990:five_prime_UTR 35.0%
TGTAGCTAATGACCTTAGTT+GGG - chr4_4:77533511-77533530 Msa0704990:five_prime_UTR 35.0%
CATATCCAAATGAAAGAGAG+AGG - chr4_4:77533612-77533631 Msa0704990:five_prime_UTR 35.0%
GTTGGAAGGACATCTTAGAA+TGG + chr4_4:77530789-77530808 None:intergenic 40.0%
AAGATGAAGTTGCAGTTGGA+AGG + chr4_4:77530803-77530822 None:intergenic 40.0%
! TGAGTTTGAAGCACATGTGT+GGG + chr4_4:77530826-77530845 None:intergenic 40.0%
! TTGAGTTTGAAGCACATGTG+TGG + chr4_4:77530827-77530846 None:intergenic 40.0%
AGGAAAGCAATAAGGAGTAG+TGG + chr4_4:77530955-77530974 None:intergenic 40.0%
!! GATGATGGAGGAAAGCAATA+AGG + chr4_4:77530963-77530982 None:intergenic 40.0%
TCTATACTGTAGACCCTGTT+TGG - chr4_4:77531266-77531285 Msa0704990:CDS 40.0%
ACTCTCCTAAATAGCACTCT+TGG + chr4_4:77531538-77531557 None:intergenic 40.0%
! TTCAGTAATTCTCTCTGGAG+TGG + chr4_4:77532574-77532593 None:intergenic 40.0%
ACTCCAGAGAGAATTACTGA+AGG - chr4_4:77532573-77532592 Msa0704990:intron 40.0%
TTTCGTATGAAGCGATGCAT+CGG + chr4_4:77533067-77533086 None:intergenic 40.0%
! TTCATACGAAAGTGCGAATC+TGG - chr4_4:77533076-77533095 Msa0704990:intron 40.0%
GTTGGTTAGAGAGTTTGCAA+TGG - chr4_4:77533240-77533259 Msa0704990:intron 40.0%
CAAGGGAATTGATCATATGC+TGG + chr4_4:77533293-77533312 None:intergenic 40.0%
!! AGGGTCATTTTGGTATGAAC+CGG - chr4_4:77533346-77533365 Msa0704990:intron 40.0%
CATTTGAAGGCCAAATGGTA+TGG - chr4_4:77533384-77533403 Msa0704990:intron 40.0%
GTAGCTAATGACCTTAGTTG+GGG - chr4_4:77533512-77533531 Msa0704990:five_prime_UTR 40.0%
TCATTTGGATATGCTCCATC+TGG + chr4_4:77533605-77533624 None:intergenic 40.0%
TTCGTCCTCTCTCTTTCATT+TGG + chr4_4:77533620-77533639 None:intergenic 40.0%
! TCATGCATTGATCCTCCATT+AGG - chr4_4:77533704-77533723 Msa0704990:five_prime_UTR 40.0%
! CATGCATTGATCCTCCATTA+GGG - chr4_4:77533705-77533724 Msa0704990:five_prime_UTR 40.0%
GAATGAAAACTTGAACCCTC+TGG + chr4_4:77533734-77533753 None:intergenic 40.0%
TGGGAAGATGAAGTTGCAGT+TGG + chr4_4:77530807-77530826 None:intergenic 45.0%
! TGTGGTGGAGAAGAAAGAGA+AGG - chr4_4:77531597-77531616 Msa0704990:intron 45.0%
TGCAACCTGCAACATGTCTT+TGG - chr4_4:77531841-77531860 Msa0704990:CDS 45.0%
! AATTTGCTTGGACAGCATGC+AGG - chr4_4:77532073-77532092 Msa0704990:intron 45.0%
CAGCCTTCAGTAATTCTCTC+TGG + chr4_4:77532579-77532598 None:intergenic 45.0%
CAGAGAGAATTACTGAAGGC+TGG - chr4_4:77532577-77532596 Msa0704990:intron 45.0%
CGCTGTTACAAACGAAGAGT+CGG - chr4_4:77532615-77532634 Msa0704990:intron 45.0%
CAAACGAAGAGTCGGTTAAC+TGG - chr4_4:77532623-77532642 Msa0704990:intron 45.0%
TGCAAACTGTAACCGAAGCA+TGG - chr4_4:77532814-77532833 Msa0704990:intron 45.0%
GCAAACTGTAACCGAAGCAT+GGG - chr4_4:77532815-77532834 Msa0704990:intron 45.0%
! GACGCAGTTCTGACGATATA+CGG - chr4_4:77532841-77532860 Msa0704990:intron 45.0%
CTGTAACACGCAAAGCGAAA+AGG + chr4_4:77533105-77533124 None:intergenic 45.0%
GAGGCACATATGGCTTAGTA+GGG + chr4_4:77533160-77533179 None:intergenic 45.0%
TAAGCCATATGTGCCTCCAA+TGG - chr4_4:77533163-77533182 Msa0704990:intron 45.0%
! TCAACCATTGGAGGCACATA+TGG + chr4_4:77533170-77533189 None:intergenic 45.0%
CCTCCAATGGTTGAATTTCG+CGG - chr4_4:77533176-77533195 Msa0704990:intron 45.0%
CTCCAATGGTTGAATTTCGC+GGG - chr4_4:77533177-77533196 Msa0704990:intron 45.0%
TAGAGAGTTTGCAATGGAGC+TGG - chr4_4:77533246-77533265 Msa0704990:intron 45.0%
TTGGTATGAACCGGTGTTTC+AGG - chr4_4:77533355-77533374 Msa0704990:intron 45.0%
TTGAAGGCCAAATGGTATGG+AGG - chr4_4:77533387-77533406 Msa0704990:intron 45.0%
TTCTCCTCCTCCATACCATT+TGG + chr4_4:77533397-77533416 None:intergenic 45.0%
AGTGGAACAAACCCCAACTA+AGG + chr4_4:77533526-77533545 None:intergenic 45.0%
! TGGGGTTTGTTCCACTATCA+TGG - chr4_4:77533530-77533549 Msa0704990:five_prime_UTR 45.0%
CTTTAGCAGCTCCATGATAG+TGG + chr4_4:77533544-77533563 None:intergenic 45.0%
! GCAGTACTTGTTAGTCCAGA+TGG - chr4_4:77533587-77533606 Msa0704990:five_prime_UTR 45.0%
TCCTCCATCATCAACAACCG+TGG - chr4_4:77530971-77530990 Msa0704990:CDS 50.0%
!! TCCACGGTTGTTGATGATGG+AGG + chr4_4:77530975-77530994 None:intergenic 50.0%
! GAGTCCACGGTTGTTGATGA+TGG + chr4_4:77530978-77530997 None:intergenic 50.0%
CATCGTCACATCAGAGTCCA+CGG + chr4_4:77530991-77531010 None:intergenic 50.0%
ACTATAGCCACCATCCTCAC+CGG + chr4_4:77531023-77531042 None:intergenic 50.0%
! GTGAGGATGGTGGCTATAGT+TGG - chr4_4:77531023-77531042 Msa0704990:CDS 50.0%
ATGGTGGCTATAGTTGGCCA+TGG - chr4_4:77531029-77531048 Msa0704990:CDS 50.0%
CCCAAGAAGCAGAGTTGAGA+GGG + chr4_4:77531064-77531083 None:intergenic 50.0%
CCCTCTCAACTCTGCTTCTT+GGG - chr4_4:77531061-77531080 Msa0704990:CDS 50.0%
TCCCAAGAAGCAGAGTTGAG+AGG + chr4_4:77531065-77531084 None:intergenic 50.0%
! GGAGGCACATATGGCTTAGT+AGG + chr4_4:77533161-77533180 None:intergenic 50.0%
CCGCGAAATTCAACCATTGG+AGG + chr4_4:77533179-77533198 None:intergenic 50.0%
TGCCCGCGAAATTCAACCAT+TGG + chr4_4:77533182-77533201 None:intergenic 50.0%
AAGGCCAAATGGTATGGAGG+AGG - chr4_4:77533390-77533409 Msa0704990:CDS 50.0%
ATGGAGCTGCTAAAGCTGCA+GGG - chr4_4:77533549-77533568 Msa0704990:five_prime_UTR 50.0%
! CTGCAGGGCAGTCTTATACT+GGG - chr4_4:77533564-77533583 Msa0704990:five_prime_UTR 50.0%
! TGCAGGGCAGTCTTATACTG+GGG - chr4_4:77533565-77533584 Msa0704990:five_prime_UTR 50.0%
ATAGCTCGGTAAGCAGCGAG+TGG - chr4_4:77530705-77530724 Msa0704990:CDS 55.0%
CGTGGACTCTGATGTGACGA+TGG - chr4_4:77530989-77531008 Msa0704990:CDS 55.0%
TGTGACGATGGATGAGCCTC+CGG - chr4_4:77531001-77531020 Msa0704990:CDS 55.0%
GCCCTCTCAACTCTGCTTCT+TGG - chr4_4:77531060-77531079 Msa0704990:CDS 55.0%
! ACTGCGTCGATCCCATGCTT+CGG + chr4_4:77532829-77532848 None:intergenic 55.0%
GTTGAAGAACTGCGGTCGTC+AGG - chr4_4:77532956-77532975 Msa0704990:intron 55.0%
CATGGAGCTGCTAAAGCTGC+AGG - chr4_4:77533548-77533567 Msa0704990:five_prime_UTR 55.0%
! GCTGCAGGGCAGTCTTATAC+TGG - chr4_4:77533563-77533582 Msa0704990:five_prime_UTR 55.0%
TCCTCCATTAGGGACTCCAG+AGG - chr4_4:77533715-77533734 Msa0704990:five_prime_UTR 55.0%
CCTCCATTAGGGACTCCAGA+GGG - chr4_4:77533716-77533735 Msa0704990:five_prime_UTR 55.0%
!! GAACCCTCTGGAGTCCCTAA+TGG + chr4_4:77533722-77533741 None:intergenic 55.0%
ATAGCCACCATCCTCACCGG+AGG + chr4_4:77531020-77531039 None:intergenic 60.0%
TGAGAGGGCTGACAGCTCCA+TGG + chr4_4:77531049-77531068 None:intergenic 60.0%
ATGGAGCTGGCGCGTTGTAG+CGG - chr4_4:77533259-77533278 Msa0704990:intron 60.0%
!! CCCTCTGGAGTCCCTAATGG+AGG + chr4_4:77533719-77533738 None:intergenic 60.0%
CGATGGATGAGCCTCCGGTG+AGG - chr4_4:77531006-77531025 Msa0704990:CDS 65.0%
GGATGAGCCTCCGGTGAGGA+TGG - chr4_4:77531010-77531029 Msa0704990:CDS 65.0%
TGAGCCTCCGGTGAGGATGG+TGG - chr4_4:77531013-77531032 Msa0704990:CDS 65.0%
TGGAGCTGGCGCGTTGTAGC+GGG - chr4_4:77533260-77533279 Msa0704990:intron 65.0%
GGAGCTGGCGCGTTGTAGCG+GGG - chr4_4:77533261-77533280 Msa0704990:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 77530699 77533793 77530699 ID=Msa0704990;Name=Msa0704990
chr4_4 mRNA 77530699 77533793 77530699 ID=Msa0704990-mRNA-1;Parent=Msa0704990;Name=Msa0704990-mRNA-1;_AED=0.09;_eAED=0.09;_QI=309|0.5|0.33|1|1|1|3|0|425
chr4_4 exon 77530699 77531593 77530699 ID=Msa0704990-mRNA-1:exon:24647;Parent=Msa0704990-mRNA-1
chr4_4 exon 77531710 77531996 77531710 ID=Msa0704990-mRNA-1:exon:24646;Parent=Msa0704990-mRNA-1
chr4_4 exon 77533389 77533793 77533389 ID=Msa0704990-mRNA-1:exon:24645;Parent=Msa0704990-mRNA-1
chr4_4 five_prime_UTR 77533485 77533793 77533485 ID=Msa0704990-mRNA-1:five_prime_utr;Parent=Msa0704990-mRNA-1
chr4_4 CDS 77533389 77533484 77533389 ID=Msa0704990-mRNA-1:cds;Parent=Msa0704990-mRNA-1
chr4_4 CDS 77531710 77531996 77531710 ID=Msa0704990-mRNA-1:cds;Parent=Msa0704990-mRNA-1
chr4_4 CDS 77530699 77531593 77530699 ID=Msa0704990-mRNA-1:cds;Parent=Msa0704990-mRNA-1
Gene Sequence

>Msa0704990

ATGGATGAGCCTCCGGTGAGGATGGTGGCTATAGTTGGCCATGGAGCTGTCAGCCCTCTCAACTCTGCTTCTTGGGAACAAGTCATGCTTCATACTGCAAAAAGATTGAAATGGGTTGATGAAGGGTATGAACTTCTTGTATTTACCGACGAGTGCATTCAATCTAATGAACCACTCCAGAGAGAATTACTGAAGGCTGGTATATTAGTGATTGTCGCTGTTACAAACGAAGAGTCGGTTAACTGGATTAAAATCAGCAGCAAAACTATTGAAAATGTAATATGCTTTGACTCTTCACTAGATTTGAAGAACAAATTAGGAGGCTATGAGATTCACAATGAAGTAAAGGGAAGCATATTTGGAAAAATATTGGGGAGTTCCGAGCCAGTTCCAGTATTGAAAAACTTGAGAGCAAAGGGTTTTTCAACTTTAAACTGTATGTTGAAGAACTGCGGTCGTCAGGTACTTAATTGCTTGTTGGATCCTAATTGTAGAAAAGCTCTTCAATGTCTGAATAAGTGTAGTCCTGTTGATCAAGTATGTAATTACCGATGCATCGCTTCATACGAAAGTGCGAATCTGGAAGCCTTTTCGCTTTGCGTGTTACAGAAAAATAATTGTCTTGAGTTGGAAGCAGAAGTCCCTACTAAGCCATATGTGCCTCCAATGGTTGAATTTCGCGGGCAGAACTTGAGTCATGAAATTGCAGAAGATTTGTTTGTTGGTTGGTTAGAGAGTTTGCAATGGAGCTGGCGCGTTGTAGCGGGGCAGAATCCAGCATATGATCAATTCCCTTGTCAATATCAGCTATTCTATAGAGGAAAAGCAAAAGGGTCATTTTGGTATGAACCGGTGTTTCAGGTAAAAACATTTGAAGGCCAAATGGTATGGAGGAGGAGAAAATATAGGGTTAAGAGAGGTAAGGTATATGGCACATTCTATTTCAGTGTATTAGATAATGGAGTTATTTCAAATGAGTTTTGGACAATTGTGGATGTAGCTAATGACCTTAGTTGGGGTTTGTTCCACTATCATGGAGCTGCTAAAGCTGCAGGGCAGTCTTATACTGGGGCAGTACTTGTTAGTCCAGATGGAGCATATCCAAATGAAAGAGAGAGGACGAAAATTGTTGCTGCACTAGAGAAATGTGAAATCAAAGAGTGGGAGCTTTTCTTTGTTGACAATTGTTCATGCATTGATCCTCCATTAGGGACTCCAGAGGGTTCAAGTTTTCATTCTGTAGTCCAAATTAATGATCCAAATTGGATGAATGTGTGA

Protein sequence

>Msa0704990

MDEPPVRMVAIVGHGAVSPLNSASWEQVMLHTAKRLKWVDEGYELLVFTDECIQSNEPLQRELLKAGILVIVAVTNEESVNWIKISSKTIENVICFDSSLDLKNKLGGYEIHNEVKGSIFGKILGSSEPVPVLKNLRAKGFSTLNCMLKNCGRQVLNCLLDPNCRKALQCLNKCSPVDQVCNYRCIASYESANLEAFSLCVLQKNNCLELEAEVPTKPYVPPMVEFRGQNLSHEIAEDLFVGWLESLQWSWRVVAGQNPAYDQFPCQYQLFYRGKAKGSFWYEPVFQVKTFEGQMVWRRRKYRVKRGKVYGTFYFSVLDNGVISNEFWTIVDVANDLSWGLFHYHGAAKAAGQSYTGAVLVSPDGAYPNERERTKIVAALEKCEIKEWELFFVDNCSCIDPPLGTPEGSSFHSVVQINDPNWMNV*