AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1416460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1416460 MtrunA17_Chr1g0193711 96.813 251 8 0 1 251 1 251 0.0 503
Msa1416460 MtrunA17_Chr7g0270991 69.650 257 71 5 1 251 6 261 3.03e-118 338
Msa1416460 MtrunA17_Chr1g0213971 64.677 201 63 3 52 249 48 243 2.28e-88 262
Msa1416460 MtrunA17_Chr3g0104751 65.027 183 55 2 74 249 23 203 8.57e-78 233
Msa1416460 MtrunA17_Chr3g0113441 63.842 177 54 3 78 247 58 231 1.11e-72 221
Msa1416460 MtrunA17_Chr7g0274841 67.808 146 40 1 86 224 5 150 5.02e-69 210
Msa1416460 MtrunA17_Chr4g0038431 65.101 149 45 1 83 224 2 150 1.10e-68 209
Msa1416460 MtrunA17_Chr3g0145501 66.438 146 42 1 86 224 13 158 4.23e-67 206
Msa1416460 MtrunA17_Chr8g0353571 58.084 167 63 3 87 247 20 185 3.88e-62 193
Msa1416460 MtrunA17_Chr7g0260441 59.763 169 58 2 87 247 9 175 2.42e-61 204
Msa1416460 MtrunA17_Chr4g0045321 56.977 172 65 2 85 248 4 174 2.05e-60 194
Msa1416460 MtrunA17_Chr8g0374621 57.647 170 63 2 86 247 5 173 3.07e-60 194
Msa1416460 MtrunA17_Chr4g0037281 52.332 193 79 4 68 248 25 216 3.88e-59 187
Msa1416460 MtrunA17_Chr1g0149061 46.409 181 86 3 79 251 1 178 1.34e-41 151
Msa1416460 MtrunA17_Chr2g0321111 43.850 187 98 6 58 243 431 611 1.02e-40 147
Msa1416460 MtrunA17_Chr3g0138061 47.399 173 81 2 87 251 12 182 2.01e-40 148
Msa1416460 MtrunA17_Chr7g0266721 49.664 149 69 5 97 244 17 160 1.02e-39 135
Msa1416460 MtrunA17_Chr8g0351571 50.345 145 64 5 99 241 10 148 6.83e-33 117
Msa1416460 MtrunA17_Chr5g0401141 47.222 144 70 5 99 241 354 492 2.10e-29 115
Msa1416460 MtrunA17_Chr3g0122871 62.712 59 22 0 170 228 55 113 4.11e-23 90.9
Msa1416460 MtrunA17_Chr2g0288371 44.872 156 74 8 92 242 15 163 1.29e-21 93.2
Msa1416460 MtrunA17_Chr6g0484281 37.500 168 83 9 97 250 8 167 2.03e-16 78.2
Msa1416460 MtrunA17_Chr8g0357591 36.905 168 84 9 97 250 8 167 2.83e-15 75.1
Msa1416460 MtrunA17_Chr2g0305071 27.094 203 107 8 71 234 44 244 1.59e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1416460 AT3G62030.3 62.121 264 80 7 1 250 1 258 7.44e-106 307
Msa1416460 AT3G62030.1 61.887 265 80 7 1 250 1 259 1.07e-105 306
Msa1416460 AT3G62030.2 70.370 216 55 4 42 251 101 313 1.04e-104 306
Msa1416460 AT5G13120.2 64.615 195 61 3 62 249 59 252 6.93e-87 259
Msa1416460 AT5G13120.1 64.615 195 61 3 62 249 63 256 8.72e-87 258
Msa1416460 AT2G29960.1 65.405 185 50 3 77 249 19 201 7.39e-77 231
Msa1416460 AT2G29960.3 65.405 185 50 3 77 249 19 201 7.39e-77 231
Msa1416460 AT5G58710.1 66.286 175 50 2 82 249 32 204 5.69e-76 229
Msa1416460 AT3G55920.1 58.462 195 71 3 62 249 37 228 1.04e-71 219
Msa1416460 AT2G21130.1 62.722 169 54 2 86 247 6 172 2.11e-71 216
Msa1416460 AT3G56070.1 62.722 169 54 2 86 247 5 171 5.89e-70 213
Msa1416460 AT3G56070.2 62.722 169 54 2 86 247 5 171 5.89e-70 213
Msa1416460 AT4G38740.1 60.947 169 57 2 86 247 5 171 2.96e-69 211
Msa1416460 AT2G16600.1 66.438 146 42 1 86 224 6 151 1.36e-68 209
Msa1416460 AT2G29960.2 60.428 187 50 4 75 249 17 191 8.57e-68 208
Msa1416460 AT4G34870.1 57.396 169 63 2 86 247 5 171 1.34e-62 194
Msa1416460 AT3G63400.2 57.955 176 64 2 79 246 1 174 2.07e-61 198
Msa1416460 AT2G38730.1 57.485 167 64 3 87 247 34 199 4.71e-61 191
Msa1416460 AT4G34960.1 55.682 176 70 2 82 250 44 218 1.73e-60 190
Msa1416460 AT3G63400.3 57.955 176 64 2 79 246 1 174 8.03e-60 198
Msa1416460 AT3G63400.4 57.955 176 64 2 79 246 1 174 8.03e-60 198
Msa1416460 AT3G63400.1 57.955 176 64 2 79 246 1 174 8.03e-60 198
Msa1416460 AT2G15790.1 58.721 172 62 2 85 248 4 174 1.06e-59 193
Msa1416460 AT2G16600.2 61.871 139 38 1 86 224 6 129 2.57e-58 182
Msa1416460 AT4G34960.2 60.156 128 44 1 82 202 44 171 1.30e-47 155
Msa1416460 AT3G44600.1 44.920 187 96 6 58 243 445 625 3.46e-41 149
Msa1416460 AT2G36130.1 48.993 149 70 5 97 244 17 160 3.49e-39 134
Msa1416460 AT3G22920.1 43.605 172 80 5 85 247 4 167 2.11e-35 126
Msa1416460 AT4G32420.1 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa1416460 AT4G32420.5 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa1416460 AT4G32420.3 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa1416460 AT4G32420.6 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa1416460 AT4G32420.4 47.403 154 73 1 79 224 1 154 4.89e-34 130
Msa1416460 AT1G01940.1 51.515 132 57 4 99 228 10 136 1.36e-32 117
Msa1416460 AT5G67530.1 44.898 147 75 5 99 244 353 494 1.74e-29 116
Msa1416460 AT4G33060.1 48.800 125 56 5 92 213 15 134 7.76e-26 105
Msa1416460 AT1G53720.2 36.970 165 88 7 97 250 8 167 5.06e-17 79.7
Msa1416460 AT1G53720.1 36.970 165 88 7 97 250 8 167 6.51e-17 80.1
Msa1416460 AT3G66654.4 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa1416460 AT3G66654.2 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa1416460 AT3G66654.3 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa1416460 AT3G66654.1 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa1416460 AT3G66654.5 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa1416460 AT2G47320.1 31.818 132 83 4 99 230 87 211 7.31e-11 60.8

Find 75 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAGTCAGAACCTTCTTTC+TGG 0.154886 tig0024351:+59553 Msa1416460:CDS
CAATTAATGTATAAGGATTT+TGG 0.155123 tig0024351:-62448 None:intergenic
AGGATTGTTATTGGCCTATT+TGG 0.177067 tig0024351:+60364 Msa1416460:CDS
AATCAAAGATTTCATGATTC+AGG 0.190133 tig0024351:+60589 Msa1416460:CDS
GACAATCGCCATGTTGTATT+TGG 0.201360 tig0024351:+62080 Msa1416460:CDS
TCGGAAATTCTCAACTGTTT+TGG 0.213114 tig0024351:-60398 None:intergenic
GTTAATTATAGTGAGAAAAT+TGG 0.213849 tig0024351:+62516 Msa1416460:three_prime_UTR
TCACTTCAGCTGAAACTTAT+AGG 0.216930 tig0024351:-59405 None:intergenic
AATTGACTGCCGTTACTATT+AGG 0.258601 tig0024351:-61021 None:intergenic
GCAGTTAAGGAGGGTGGTTT+TGG 0.262552 tig0024351:+62273 Msa1416460:three_prime_UTR
TCTGCTGGAAGGATTGTTAT+TGG 0.310916 tig0024351:+60355 Msa1416460:CDS
GGTAGTTCAATTCCTGTGTT+TGG 0.318369 tig0024351:+62309 Msa1416460:three_prime_UTR
AAAATGACAATTAATGTATA+AGG 0.322234 tig0024351:-62455 None:intergenic
GAAAACCTTGCTTGTTACTT+TGG 0.335769 tig0024351:-60308 None:intergenic
TCATTACGCGGCTAGGCTTT+CGG 0.339565 tig0024351:+60083 Msa1416460:CDS
AACCACGCGTGTTATCTAAA+AGG 0.362659 tig0024351:-59377 None:intergenic
TGGGAACAACATCTCCAAAT+AGG 0.365016 tig0024351:-60378 None:intergenic
AATGTGGCACAAAACTTTCT+AGG 0.369756 tig0024351:-59473 None:intergenic
ACTGGTGGAGTCAGTATCTA+TGG 0.378727 tig0024351:+60742 Msa1416460:CDS
AATTTATGCTTCTGAACTGT+TGG 0.402995 tig0024351:+62486 Msa1416460:three_prime_UTR
AAGCGAAATCAATCACTTCT+CGG 0.414942 tig0024351:+60121 Msa1416460:CDS
TGTCAATTACAATGCAGTTA+AGG 0.425790 tig0024351:+62260 Msa1416460:three_prime_UTR
TTCTGGTTTCAATGCTGTCC+AGG 0.432366 tig0024351:+59570 Msa1416460:CDS
TGTGCAGGAGAGAAAGGATA+TGG 0.434325 tig0024351:+60539 Msa1416460:intron
TCTGGAGAACTTCCTCTAGA+TGG 0.439502 tig0024351:+62200 Msa1416460:CDS
TTCTTTGATGTAGTTATTGG+AGG 0.441576 tig0024351:+60328 Msa1416460:CDS
AGTCTGCTAATGCATAATAT+AGG 0.446327 tig0024351:-62420 None:intergenic
ACTCGAGTGTGAAGAAGATT+AGG 0.448639 tig0024351:+59443 Msa1416460:five_prime_UTR
ATCAAAGATTTCATGATTCA+GGG 0.450983 tig0024351:+60590 Msa1416460:CDS
GTATTTGGACATGTCATTGA+TGG 0.451288 tig0024351:+62095 Msa1416460:CDS
ATCTTTGTTCTCAACACAGT+TGG 0.459490 tig0024351:+59528 Msa1416460:CDS
AGATTTCATGATTCAGGGAG+GGG 0.477957 tig0024351:+60595 Msa1416460:CDS
AATAACTGTGCAGGAGAGAA+AGG 0.485014 tig0024351:+60533 Msa1416460:intron
GGATGCAGTAAATTGTCATC+AGG 0.485711 tig0024351:+60057 Msa1416460:CDS
AATAATTAAATGCCACTGAA+AGG 0.490665 tig0024351:+62356 Msa1416460:three_prime_UTR
AATTTCCGAGCTTTGTGCAC+AGG 0.492690 tig0024351:+60412 Msa1416460:CDS
GCAGTGAAGCATGTTGGTCC+TGG 0.495639 tig0024351:+60973 Msa1416460:intron
ACTGCATCCAAGGTGTGCTC+TGG 0.499496 tig0024351:-60043 None:intergenic
ACATGCAAAATTGTTAACTC+TGG 0.506072 tig0024351:+62182 Msa1416460:CDS
ATAATTAAATGCCACTGAAA+GGG 0.508280 tig0024351:+62357 Msa1416460:three_prime_UTR
TTTAATTGGATGCAGGGAAC+TGG 0.519277 tig0024351:+60724 Msa1416460:intron
GCTTACCTGTGCACAAAGCT+CGG 0.530446 tig0024351:-60417 None:intergenic
CAGGATATCATTACGCGGCT+AGG 0.536024 tig0024351:+60076 Msa1416460:CDS
TTTGATTATGCGATGGAAGG+TGG 0.537643 tig0024351:-60573 None:intergenic
TACAATGCAGTTAAGGAGGG+TGG 0.541796 tig0024351:+62267 Msa1416460:three_prime_UTR
CATGTTGTAGACTTCATGGT+TGG 0.543936 tig0024351:+62058 Msa1416460:intron
TGGACATGTCATTGATGGAA+TGG 0.546157 tig0024351:+62100 Msa1416460:CDS
TTTGCCATGCTCAAAACTCC+AGG 0.566786 tig0024351:-60991 None:intergenic
GTTATTGGAGGTGAATCTGC+TGG 0.567014 tig0024351:+60340 Msa1416460:CDS
ATGACAATTTACTGCATCCA+AGG 0.568939 tig0024351:-60053 None:intergenic
CAATTACAATGCAGTTAAGG+AGG 0.570128 tig0024351:+62263 Msa1416460:three_prime_UTR
TGAAATCTTTGATTATGCGA+TGG 0.571761 tig0024351:-60580 None:intergenic
AAGATTTCATGATTCAGGGA+GGG 0.575956 tig0024351:+60594 Msa1416460:CDS
TGTGAGGACACTTGAATCAC+AGG 0.579355 tig0024351:+62127 Msa1416460:CDS
AATTGGATGCAGGGAACTGG+TGG 0.579513 tig0024351:+60727 Msa1416460:intron
TTCCTTGCAGTGAAGCATGT+TGG 0.583628 tig0024351:+60967 Msa1416460:intron
CAGCATTGAAACCAGAAAGA+AGG 0.585026 tig0024351:-59564 None:intergenic
TTCGCTAAATGCCCTTTCAG+TGG 0.592657 tig0024351:-62368 None:intergenic
ACTGCCGTTACTATTAGGAC+CGG 0.594476 tig0024351:-61016 None:intergenic
ATCTTTGATTATGCGATGGA+AGG 0.597625 tig0024351:-60576 None:intergenic
GAGACAAGCAGCTACAACAA+TGG 0.607894 tig0024351:+62149 Msa1416460:CDS
TTGGAGGTGAATCTGCTGGA+AGG 0.612520 tig0024351:+60344 Msa1416460:CDS
CAGGGAGGGGACTTCACAGA+AGG 0.623364 tig0024351:+60608 Msa1416460:CDS
AGCAGTACCAGAGCACACCT+TGG 0.625062 tig0024351:+60036 Msa1416460:CDS
AAGAATGTACAGCACTTCAG+AGG 0.635860 tig0024351:-62232 None:intergenic
AATTACAATGCAGTTAAGGA+GGG 0.640700 tig0024351:+62264 Msa1416460:three_prime_UTR
GCAAGCCAAAGTAACAAGCA+AGG 0.646742 tig0024351:+60303 Msa1416460:CDS
AATGCCGGTCCTAATAGTAA+CGG 0.652519 tig0024351:+61012 Msa1416460:CDS
AGCAATGACAATCCAAACAC+AGG 0.657721 tig0024351:-62321 None:intergenic
AGGATAGATCAACCATCTAG+AGG 0.669924 tig0024351:-62212 None:intergenic
AAAGATTTCATGATTCAGGG+AGG 0.670380 tig0024351:+60593 Msa1416460:CDS
GGTGGAGTCAGTATCTATGG+TGG 0.680041 tig0024351:+60745 Msa1416460:CDS
TGACATGTCCAAATACAACA+TGG 0.711914 tig0024351:-62088 None:intergenic
TTGATGGAATGGATGTTGTG+AGG 0.719565 tig0024351:+62111 Msa1416460:CDS
GTCATCAGGATATCATTACG+CGG 0.726671 tig0024351:+60071 Msa1416460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTATTTAAATAAATTTCAA+AGG - tig0024351:61205-61224 None:intergenic 10.0%
!! AAAACATATTATTAAAACTT+GGG - tig0024351:61461-61480 None:intergenic 10.0%
!!! TTTGTTTTTGTTTTCATTTT+AGG + tig0024351:59993-60012 Msa1416460:intron 15.0%
!!! TTGTTTTTGTTTTCATTTTA+GGG + tig0024351:59994-60013 Msa1416460:intron 15.0%
!! ACAAATTTAAATCTGAATAA+TGG - tig0024351:60878-60897 None:intergenic 15.0%
!! TAATCTAATAAACTATTCTA+AGG + tig0024351:61149-61168 Msa1416460:intron 15.0%
!! GAAAACATATTATTAAAACT+TGG - tig0024351:61462-61481 None:intergenic 15.0%
!!! AAATTTGAGTTTTGAAATAT+AGG - tig0024351:61627-61646 None:intergenic 15.0%
!! AAAATGACAATTAATGTATA+AGG - tig0024351:62458-62477 None:intergenic 15.0%
!! GTTTAATAAGTCTTTAAATG+TGG + tig0024351:59858-59877 Msa1416460:intron 20.0%
!! TGTAAATGTACATTGTTAAT+GGG + tig0024351:59961-59980 Msa1416460:intron 20.0%
!!! TGTTTTTGTTTTCATTTTAG+GGG + tig0024351:59995-60014 Msa1416460:intron 20.0%
!!! TAAGCATTCAAATTTTTCTT+CGG + tig0024351:60435-60454 Msa1416460:intron 20.0%
!!! CACATCAAATATGTTTTAAT+TGG + tig0024351:60710-60729 Msa1416460:intron 20.0%
!!! TGTCATTTTAATCTTTTTAC+TGG + tig0024351:60895-60914 Msa1416460:intron 20.0%
!! TTCATAAAGTAATAGAAGAT+GGG - tig0024351:61079-61098 None:intergenic 20.0%
!! ATTCATAAAGTAATAGAAGA+TGG - tig0024351:61080-61099 None:intergenic 20.0%
!! ATTACTTTATGAATCAGATA+AGG + tig0024351:61086-61105 Msa1416460:intron 20.0%
!! TTACTTTATGAATCAGATAA+GGG + tig0024351:61087-61106 Msa1416460:intron 20.0%
!! TTAGCATTTGTATTAACATT+TGG - tig0024351:61275-61294 None:intergenic 20.0%
!!! AGCATTTAGAATAACTTATT+CGG - tig0024351:61311-61330 None:intergenic 20.0%
!! AATATTCCTTGTATGTAAAA+GGG - tig0024351:61497-61516 None:intergenic 20.0%
!! TAATATTCCTTGTATGTAAA+AGG - tig0024351:61498-61517 None:intergenic 20.0%
!! TTTACATACAAGGAATATTA+TGG + tig0024351:61498-61517 Msa1416460:intron 20.0%
!! TTACATACAAGGAATATTAT+GGG + tig0024351:61499-61518 Msa1416460:intron 20.0%
!!! TTTTTATGGATTTTAAACTG+TGG + tig0024351:61668-61687 Msa1416460:intron 20.0%
!!! CAATTAATGTATAAGGATTT+TGG - tig0024351:62451-62470 None:intergenic 20.0%
!! GTTAATTATAGTGAGAAAAT+TGG + tig0024351:62516-62535 Msa1416460:three_prime_UTR 20.0%
!! TGACTAACAAGAAACTTTTT+GGG - tig0024351:59504-59523 None:intergenic 25.0%
!! ATGACTAACAAGAAACTTTT+TGG - tig0024351:59505-59524 None:intergenic 25.0%
! AAAAAGTTTCTTGTTAGTCA+TGG + tig0024351:59504-59523 Msa1416460:exon 25.0%
! ATAAGAATTAGATAGTAACC+TGG - tig0024351:59591-59610 None:intergenic 25.0%
!! TTAAGGTGTTTATTCAAACA+GGG - tig0024351:59636-59655 None:intergenic 25.0%
!! ATTAAGGTGTTTATTCAAAC+AGG - tig0024351:59637-59656 None:intergenic 25.0%
! CTGTAAATGTACATTGTTAA+TGG + tig0024351:59960-59979 Msa1416460:intron 25.0%
!! CCAAATCACGTAATTTTTAA+TGG - tig0024351:60183-60202 None:intergenic 25.0%
! CCATTAAAAATTACGTGATT+TGG + tig0024351:60180-60199 Msa1416460:intron 25.0%
!! ATTTCGTTTGCAGAAAATTT+TGG + tig0024351:60204-60223 Msa1416460:intron 25.0%
!! AAAATTTTGGATAGCCAATT+CGG + tig0024351:60217-60236 Msa1416460:intron 25.0%
!! ATTGGTTTCATTATCTTACA+TGG + tig0024351:60254-60273 Msa1416460:intron 25.0%
!! GTTTTCTTTGATGTAGTTAT+TGG + tig0024351:60325-60344 Msa1416460:CDS 25.0%
! AATCAAAGATTTCATGATTC+AGG + tig0024351:60589-60608 Msa1416460:CDS 25.0%
! ATCAAAGATTTCATGATTCA+GGG + tig0024351:60590-60609 Msa1416460:CDS 25.0%
! AGCGTACTAACAAAATATAA+CGG - tig0024351:60645-60664 None:intergenic 25.0%
!!! AATATGTTTTAATTGGATGC+AGG + tig0024351:60717-60736 Msa1416460:intron 25.0%
!!! ATATGTTTTAATTGGATGCA+GGG + tig0024351:60718-60737 Msa1416460:intron 25.0%
!! CAGTATTAAAAGTTTTGCTT+TGG + tig0024351:60852-60871 Msa1416460:intron 25.0%
!!! ATTTTTTATTTGCACTGTAC+CGG + tig0024351:61041-61060 Msa1416460:CDS 25.0%
! TACTTTATGAATCAGATAAG+GGG + tig0024351:61088-61107 Msa1416460:intron 25.0%
!!! CTGGAAATGTATTTTTAAGT+GGG + tig0024351:61392-61411 Msa1416460:intron 25.0%
! AACTCAAAAAACAACTTGTA+AGG - tig0024351:61430-61449 None:intergenic 25.0%
!!! TACAAGTTGTTTTTTGAGTT+AGG + tig0024351:61430-61449 Msa1416460:intron 25.0%
! CATATTATTAAAACTTGGGT+TGG - tig0024351:61457-61476 None:intergenic 25.0%
!!! CTAAAAGTCTGTACTTTTTA+TGG + tig0024351:61654-61673 Msa1416460:intron 25.0%
! TTGACCTACTGAAAAAATAA+AGG + tig0024351:61708-61727 Msa1416460:intron 25.0%
! ATAATTGCATTTGTGAGATT+GGG - tig0024351:61751-61770 None:intergenic 25.0%
! TATAATTGCATTTGTGAGAT+TGG - tig0024351:61752-61771 None:intergenic 25.0%
! CAATTGCTACAATGTTATAT+TGG + tig0024351:61785-61804 Msa1416460:intron 25.0%
! TTTGACAATTTAACATCAAC+AGG + tig0024351:61819-61838 Msa1416460:intron 25.0%
! TTGACAATTTAACATCAACA+GGG + tig0024351:61820-61839 Msa1416460:intron 25.0%
! TGCAATCAAAGTCAATAAAA+AGG - tig0024351:61872-61891 None:intergenic 25.0%
!! ACAATTTTGCATGTTTTCAA+GGG - tig0024351:62176-62195 None:intergenic 25.0%
!! AACAATTTTGCATGTTTTCA+AGG - tig0024351:62177-62196 None:intergenic 25.0%
! AATAATTAAATGCCACTGAA+AGG + tig0024351:62356-62375 Msa1416460:three_prime_UTR 25.0%
! ATAATTAAATGCCACTGAAA+GGG + tig0024351:62357-62376 Msa1416460:three_prime_UTR 25.0%
!!! AGCGAATTACTTATTTTGTA+AGG + tig0024351:62385-62404 Msa1416460:three_prime_UTR 25.0%
ATGCTATAAGCTGCAAATTA+AGG - tig0024351:59653-59672 None:intergenic 30.0%
! GCATAAGAATGTGTTACTAA+AGG + tig0024351:59934-59953 Msa1416460:intron 30.0%
TTCTTTGATGTAGTTATTGG+AGG + tig0024351:60328-60347 Msa1416460:CDS 30.0%
! TATGAGTATTGTGGTGAAAT+TGG + tig0024351:60472-60491 Msa1416460:intron 30.0%
TTTGAGAATAATAACTGTGC+AGG + tig0024351:60524-60543 Msa1416460:intron 30.0%
TGAAATCTTTGATTATGCGA+TGG - tig0024351:60583-60602 None:intergenic 30.0%
TACATATACACATGATGCTA+AGG + tig0024351:60671-60690 Msa1416460:intron 30.0%
ACATATACACATGATGCTAA+GGG + tig0024351:60672-60691 Msa1416460:intron 30.0%
CCACTTAAAAATACATTTCC+AGG - tig0024351:61394-61413 None:intergenic 30.0%
!! CCTGGAAATGTATTTTTAAG+TGG + tig0024351:61391-61410 Msa1416460:intron 30.0%
AAAAACAACTTGTAAGGTGA+GGG - tig0024351:61424-61443 None:intergenic 30.0%
AAAAAACAACTTGTAAGGTG+AGG - tig0024351:61425-61444 None:intergenic 30.0%
!! AAAAGTACAGACTTTTAGCT+AGG - tig0024351:61652-61671 None:intergenic 30.0%
!!! CAAGCCTTTATTTTTTCAGT+AGG - tig0024351:61715-61734 None:intergenic 30.0%
! TTTTCATGTTGTAGACTTCA+TGG + tig0024351:62054-62073 Msa1416460:intron 30.0%
ACATGCAAAATTGTTAACTC+TGG + tig0024351:62182-62201 Msa1416460:CDS 30.0%
TGTCAATTACAATGCAGTTA+AGG + tig0024351:62260-62279 Msa1416460:three_prime_UTR 30.0%
AATTACAATGCAGTTAAGGA+GGG + tig0024351:62264-62283 Msa1416460:three_prime_UTR 30.0%
AGTCTGCTAATGCATAATAT+AGG - tig0024351:62423-62442 None:intergenic 30.0%
AATTTATGCTTCTGAACTGT+TGG + tig0024351:62486-62505 Msa1416460:three_prime_UTR 30.0%
TCACTTCAGCTGAAACTTAT+AGG - tig0024351:59408-59427 None:intergenic 35.0%
AATGTGGCACAAAACTTTCT+AGG - tig0024351:59476-59495 None:intergenic 35.0%
!!! AACTTTTTGGGTGGAAAATG+TGG - tig0024351:59492-59511 None:intergenic 35.0%
!! CTAACAAGAAACTTTTTGGG+TGG - tig0024351:59501-59520 None:intergenic 35.0%
ATCTTTGTTCTCAACACAGT+TGG + tig0024351:59528-59547 Msa1416460:CDS 35.0%
ATGACAATTTACTGCATCCA+AGG - tig0024351:60056-60075 None:intergenic 35.0%
AAGCGAAATCAATCACTTCT+CGG + tig0024351:60121-60140 Msa1416460:CDS 35.0%
! GAAAACCTTGCTTGTTACTT+TGG - tig0024351:60311-60330 None:intergenic 35.0%
! AGGATTGTTATTGGCCTATT+TGG + tig0024351:60364-60383 Msa1416460:CDS 35.0%
! CGGAAATTCTCAACTGTTTT+GGG - tig0024351:60400-60419 None:intergenic 35.0%
! TCGGAAATTCTCAACTGTTT+TGG - tig0024351:60401-60420 None:intergenic 35.0%
! TTGTCGTTGTATGAGTATTG+TGG + tig0024351:60463-60482 Msa1416460:intron 35.0%
ATCTTTGATTATGCGATGGA+AGG - tig0024351:60579-60598 None:intergenic 35.0%
AAAGATTTCATGATTCAGGG+AGG + tig0024351:60593-60612 Msa1416460:CDS 35.0%
AAGATTTCATGATTCAGGGA+GGG + tig0024351:60594-60613 Msa1416460:CDS 35.0%
! TCTTTTTACTGGACTGTCAA+TGG + tig0024351:60906-60925 Msa1416460:intron 35.0%
AATTGACTGCCGTTACTATT+AGG - tig0024351:61024-61043 None:intergenic 35.0%
! GAAGTTCCCTTTTACATACA+AGG + tig0024351:61488-61507 Msa1416460:intron 35.0%
! ATAGGCTGTGTGTTTCATTT+TGG - tig0024351:61609-61628 None:intergenic 35.0%
TGGTTGAGACGCTAAATATT+AGG - tig0024351:61961-61980 None:intergenic 35.0%
TGACATGTCCAAATACAACA+TGG - tig0024351:62091-62110 None:intergenic 35.0%
GTATTTGGACATGTCATTGA+TGG + tig0024351:62095-62114 Msa1416460:CDS 35.0%
CAATTACAATGCAGTTAAGG+AGG + tig0024351:62263-62282 Msa1416460:three_prime_UTR 35.0%
! ATCCTTTTAGATAACACGCG+TGG + tig0024351:59375-59394 Msa1416460:five_prime_UTR 40.0%
AACCACGCGTGTTATCTAAA+AGG - tig0024351:59380-59399 None:intergenic 40.0%
ACTCGAGTGTGAAGAAGATT+AGG + tig0024351:59443-59462 Msa1416460:five_prime_UTR 40.0%
! CAGCATTGAAACCAGAAAGA+AGG - tig0024351:59567-59586 None:intergenic 40.0%
GGATGCAGTAAATTGTCATC+AGG + tig0024351:60057-60076 Msa1416460:CDS 40.0%
GTCATCAGGATATCATTACG+CGG + tig0024351:60071-60090 Msa1416460:CDS 40.0%
!! GTTTTGAATCACTGCCGAAT+TGG - tig0024351:60234-60253 None:intergenic 40.0%
TCGGCAGTGATTCAAAACAT+TGG + tig0024351:60236-60255 Msa1416460:intron 40.0%
!! TACATGGCTGTGTTACTTCT+AGG + tig0024351:60270-60289 Msa1416460:intron 40.0%
TCTGCTGGAAGGATTGTTAT+TGG + tig0024351:60355-60374 Msa1416460:CDS 40.0%
TGGGAACAACATCTCCAAAT+AGG - tig0024351:60381-60400 None:intergenic 40.0%
AATAACTGTGCAGGAGAGAA+AGG + tig0024351:60533-60552 Msa1416460:intron 40.0%
TTTGATTATGCGATGGAAGG+TGG - tig0024351:60576-60595 None:intergenic 40.0%
AGATTTCATGATTCAGGGAG+GGG + tig0024351:60595-60614 Msa1416460:CDS 40.0%
TTTAATTGGATGCAGGGAAC+TGG + tig0024351:60724-60743 Msa1416460:intron 40.0%
AATGCCGGTCCTAATAGTAA+CGG + tig0024351:61012-61031 Msa1416460:CDS 40.0%
AGATGGGAAAATAGTCTCAC+CGG - tig0024351:61063-61082 None:intergenic 40.0%
GTCCCACGTTAAATGAGATA+TGG + tig0024351:61368-61387 Msa1416460:intron 40.0%
GGCCATATCTCATTTAACGT+GGG - tig0024351:61373-61392 None:intergenic 40.0%
AGGCCATATCTCATTTAACG+TGG - tig0024351:61374-61393 None:intergenic 40.0%
ACGTTAAATGAGATATGGCC+TGG + tig0024351:61373-61392 Msa1416460:intron 40.0%
CATGTTGTAGACTTCATGGT+TGG + tig0024351:62058-62077 Msa1416460:intron 40.0%
GACAATCGCCATGTTGTATT+TGG + tig0024351:62080-62099 Msa1416460:CDS 40.0%
TGGACATGTCATTGATGGAA+TGG + tig0024351:62100-62119 Msa1416460:CDS 40.0%
TTGATGGAATGGATGTTGTG+AGG + tig0024351:62111-62130 Msa1416460:CDS 40.0%
AGGATAGATCAACCATCTAG+AGG - tig0024351:62215-62234 None:intergenic 40.0%
AAGAATGTACAGCACTTCAG+AGG - tig0024351:62235-62254 None:intergenic 40.0%
GGTAGTTCAATTCCTGTGTT+TGG + tig0024351:62309-62328 Msa1416460:three_prime_UTR 40.0%
AGCAATGACAATCCAAACAC+AGG - tig0024351:62324-62343 None:intergenic 40.0%
CAGAGTCAGAACCTTCTTTC+TGG + tig0024351:59553-59572 Msa1416460:CDS 45.0%
!! TTCTGGTTTCAATGCTGTCC+AGG + tig0024351:59570-59589 Msa1416460:CDS 45.0%
GCAAGCCAAAGTAACAAGCA+AGG + tig0024351:60303-60322 Msa1416460:CDS 45.0%
GTTATTGGAGGTGAATCTGC+TGG + tig0024351:60340-60359 Msa1416460:CDS 45.0%
! AATTTCCGAGCTTTGTGCAC+AGG + tig0024351:60412-60431 Msa1416460:CDS 45.0%
TGTGCAGGAGAGAAAGGATA+TGG + tig0024351:60539-60558 Msa1416460:intron 45.0%
ACTGGTGGAGTCAGTATCTA+TGG + tig0024351:60742-60761 Msa1416460:CDS 45.0%
TTCCTTGCAGTGAAGCATGT+TGG + tig0024351:60967-60986 Msa1416460:intron 45.0%
TTTGCCATGCTCAAAACTCC+AGG - tig0024351:60994-61013 None:intergenic 45.0%
!! GTTTTGAGCATGGCAAATGC+CGG + tig0024351:60997-61016 Msa1416460:CDS 45.0%
ACTGCCGTTACTATTAGGAC+CGG - tig0024351:61019-61038 None:intergenic 45.0%
AAGGGGAATCCTTCTGTGTT+TGG + tig0024351:61105-61124 Msa1416460:intron 45.0%
AGGGGAATCCTTCTGTGTTT+GGG + tig0024351:61106-61125 Msa1416460:intron 45.0%
CCTGTTTACCCAAACACAGA+AGG - tig0024351:61117-61136 None:intergenic 45.0%
CCTTCTGTGTTTGGGTAAAC+AGG + tig0024351:61114-61133 Msa1416460:intron 45.0%
TGTGAGGACACTTGAATCAC+AGG + tig0024351:62127-62146 Msa1416460:CDS 45.0%
GAGACAAGCAGCTACAACAA+TGG + tig0024351:62149-62168 Msa1416460:CDS 45.0%
TCTGGAGAACTTCCTCTAGA+TGG + tig0024351:62200-62219 Msa1416460:CDS 45.0%
TACAATGCAGTTAAGGAGGG+TGG + tig0024351:62267-62286 Msa1416460:three_prime_UTR 45.0%
! CAGTTAAGGAGGGTGGTTTT+GGG + tig0024351:62274-62293 Msa1416460:three_prime_UTR 45.0%
!! AGTTAAGGAGGGTGGTTTTG+GGG + tig0024351:62275-62294 Msa1416460:three_prime_UTR 45.0%
TTCGCTAAATGCCCTTTCAG+TGG - tig0024351:62371-62390 None:intergenic 45.0%
CAGGATATCATTACGCGGCT+AGG + tig0024351:60076-60095 Msa1416460:CDS 50.0%
TCATTACGCGGCTAGGCTTT+CGG + tig0024351:60083-60102 Msa1416460:CDS 50.0%
TTGGAGGTGAATCTGCTGGA+AGG + tig0024351:60344-60363 Msa1416460:CDS 50.0%
GCTTACCTGTGCACAAAGCT+CGG - tig0024351:60420-60439 None:intergenic 50.0%
AATTGGATGCAGGGAACTGG+TGG + tig0024351:60727-60746 Msa1416460:intron 50.0%
GGTGGAGTCAGTATCTATGG+TGG + tig0024351:60745-60764 Msa1416460:CDS 50.0%
GACCAACATGCTTCACTGCA+AGG - tig0024351:60972-60991 None:intergenic 50.0%
!!! TGGTCCTGGAGTTTTGAGCA+TGG + tig0024351:60987-61006 Msa1416460:CDS 50.0%
! GCAGTTAAGGAGGGTGGTTT+TGG + tig0024351:62273-62292 Msa1416460:three_prime_UTR 50.0%
AGCAGTACCAGAGCACACCT+TGG + tig0024351:60036-60055 Msa1416460:CDS 55.0%
ACTGCATCCAAGGTGTGCTC+TGG - tig0024351:60046-60065 None:intergenic 55.0%
GCAGTGAAGCATGTTGGTCC+TGG + tig0024351:60973-60992 Msa1416460:intron 55.0%
!!! TAAGGAGGGTGGTTTTGGGG+AGG + tig0024351:62278-62297 Msa1416460:three_prime_UTR 55.0%
CAGGGAGGGGACTTCACAGA+AGG + tig0024351:60608-60627 Msa1416460:CDS 60.0%
!!! GAGGGTGGTTTTGGGGAGGA+GGG + tig0024351:62282-62301 Msa1416460:three_prime_UTR 60.0%
!!! GTGGTTTTGGGGAGGAGGGA+GGG + tig0024351:62286-62305 Msa1416460:three_prime_UTR 60.0%
!!! TGGTTTTGGGGAGGAGGGAG+GGG + tig0024351:62287-62306 Msa1416460:three_prime_UTR 60.0%
!!! GGAGGGTGGTTTTGGGGAGG+AGG + tig0024351:62281-62300 Msa1416460:three_prime_UTR 65.0%
!!! GGTGGTTTTGGGGAGGAGGG+AGG + tig0024351:62285-62304 Msa1416460:three_prime_UTR 65.0%
!!! GGTTTTGGGGAGGAGGGAGG+GGG + tig0024351:62288-62307 Msa1416460:three_prime_UTR 65.0%
! GTGCGTGCGCGCGCACGTGC+TGG - tig0024351:61981-62000 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0024351 gene 59365 62548 59365 ID=Msa1416460;Name=Msa1416460
tig0024351 mRNA 59365 62548 59365 ID=Msa1416460-mRNA-1;Parent=Msa1416460;Name=Msa1416460-mRNA-1;_AED=0.07;_eAED=0.07;_QI=158|1|1|1|1|1|7|322|251
tig0024351 exon 59365 59591 59365 ID=Msa1416460-mRNA-1:exon:22920;Parent=Msa1416460-mRNA-1
tig0024351 exon 60015 60170 60015 ID=Msa1416460-mRNA-1:exon:22921;Parent=Msa1416460-mRNA-1
tig0024351 exon 60292 60433 60292 ID=Msa1416460-mRNA-1:exon:22922;Parent=Msa1416460-mRNA-1
tig0024351 exon 60546 60634 60546 ID=Msa1416460-mRNA-1:exon:22923;Parent=Msa1416460-mRNA-1
tig0024351 exon 60739 60793 60739 ID=Msa1416460-mRNA-1:exon:22924;Parent=Msa1416460-mRNA-1
tig0024351 exon 60977 61062 60977 ID=Msa1416460-mRNA-1:exon:22925;Parent=Msa1416460-mRNA-1
tig0024351 exon 62068 62548 62068 ID=Msa1416460-mRNA-1:exon:22926;Parent=Msa1416460-mRNA-1
tig0024351 five_prime_UTR 59365 59522 59365 ID=Msa1416460-mRNA-1:five_prime_utr;Parent=Msa1416460-mRNA-1
tig0024351 CDS 59523 59591 59523 ID=Msa1416460-mRNA-1:cds;Parent=Msa1416460-mRNA-1
tig0024351 CDS 60015 60170 60015 ID=Msa1416460-mRNA-1:cds;Parent=Msa1416460-mRNA-1
tig0024351 CDS 60292 60433 60292 ID=Msa1416460-mRNA-1:cds;Parent=Msa1416460-mRNA-1
tig0024351 CDS 60546 60634 60546 ID=Msa1416460-mRNA-1:cds;Parent=Msa1416460-mRNA-1
tig0024351 CDS 60739 60793 60739 ID=Msa1416460-mRNA-1:cds;Parent=Msa1416460-mRNA-1
tig0024351 CDS 60977 61062 60977 ID=Msa1416460-mRNA-1:cds;Parent=Msa1416460-mRNA-1
tig0024351 CDS 62068 62226 62068 ID=Msa1416460-mRNA-1:cds;Parent=Msa1416460-mRNA-1
tig0024351 three_prime_UTR 62227 62548 62227 ID=Msa1416460-mRNA-1:three_prime_utr;Parent=Msa1416460-mRNA-1
Gene Sequence

>Msa1416460

ATGGCATCTTTGTTCTCAACACAGTTGGTGCAGAGTCAGAACCTTCTTTCTGGTTTCAATGCTGTCCAGGGGAAGTCACATGTAGTCTGTAGCAGTACCAGAGCACACCTTGGATGCAGTAAATTGTCATCAGGATATCATTACGCGGCTAGGCTTTCGGTGTCACAACAATCTAAAGCGAAATCAATCACTTCTCGGAGAATAACATGTACTAGTAGTGCTAGTGCTGCAGATCTGCAAGCCAAAGTAACAAGCAAGGTTTTCTTTGATGTAGTTATTGGAGGTGAATCTGCTGGAAGGATTGTTATTGGCCTATTTGGAGATGTTGTTCCCAAAACAGTTGAGAATTTCCGAGCTTTGTGCACAGGAGAGAAAGGATATGGTTACAAAGATTCCACCTTCCATCGCATAATCAAAGATTTCATGATTCAGGGAGGGGACTTCACAGAAGGAAATGGAACTGGTGGAGTCAGTATCTATGGTGGTAAATTTGAAGATGAGAATTTTACTTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCAAATGCCGGTCCTAATAGTAACGGCAGTCAATTTTTTATTTGCACTGTACCGACTTCATGGTTGGACAATCGCCATGTTGTATTTGGACATGTCATTGATGGAATGGATGTTGTGAGGACACTTGAATCACAGGAGACAAGCAGCTACAACAATGGTCCCTTGAAAACATGCAAAATTGTTAACTCTGGAGAACTTCCTCTAGATGGTTGA

Protein sequence

>Msa1416460

MASLFSTQLVQSQNLLSGFNAVQGKSHVVCSSTRAHLGCSKLSSGYHYAARLSVSQQSKAKSITSRRITCTSSASAADLQAKVTSKVFFDVVIGGESAGRIVIGLFGDVVPKTVENFRALCTGEKGYGYKDSTFHRIIKDFMIQGGDFTEGNGTGGVSIYGGKFEDENFTLKHVGPGVLSMANAGPNSNGSQFFICTVPTSWLDNRHVVFGHVIDGMDVVRTLESQETSSYNNGPLKTCKIVNSGELPLDG*