AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0430020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0430020 MtrunA17_Chr3g0133941 94.495 218 6 1 1 212 1 218 9.37e-151 417
Msa0430020 MtrunA17_Chr3g0142051 37.719 114 61 3 95 207 13 117 9.23e-15 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0430020 AT1G07700.1 76.515 132 30 1 76 207 74 204 9.52e-71 214
Msa0430020 AT1G07700.4 76.515 132 30 1 76 207 74 204 9.52e-71 214
Msa0430020 AT1G07700.2 76.515 132 30 1 76 207 74 204 9.52e-71 214
Msa0430020 AT1G07700.3 76.515 132 30 1 76 207 87 217 3.43e-70 213
Msa0430020 AT5G42980.1 33.628 113 67 2 95 207 12 116 6.29e-12 60.8
Msa0430020 AT3G51030.1 36.697 109 59 3 95 202 13 112 1.37e-11 59.7

Find 64 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGGCAAAAGCGCGGTTT+TGG 0.277958 3_2:+81591705 None:intergenic
TCCTTTCTTTGTCTCTGGTT+GGG 0.298576 3_2:-81593059 None:intergenic
TAGTATCCGCAAACATTAAA+AGG 0.305832 3_2:-81593338 None:intergenic
ACTTCCCAACAAAGTGAATT+AGG 0.309838 3_2:-81593273 None:intergenic
AACAATCCTTTCTTTGTCTC+TGG 0.330128 3_2:-81593064 None:intergenic
GTCAGCCTAATTCACTTTGT+TGG 0.358599 3_2:+81593268 Msa0430020:three_prime_UTR
TATGTTCGGAAAATTCATTT+TGG 0.367172 3_2:+81591775 Msa0430020:five_prime_UTR
CTAGATAAGTCTAAAGGAAC+TGG 0.380813 3_2:+81592206 Msa0430020:CDS
GCAAAGTTGTGCAAGAAATC+TGG 0.381106 3_2:+81592296 Msa0430020:CDS
TCAGCCTAATTCACTTTGTT+GGG 0.398705 3_2:+81593269 Msa0430020:three_prime_UTR
TTGCGGAACGACTTAGAATC+AGG 0.406477 3_2:+81592667 Msa0430020:CDS
AATTCTCTCACACATTCAAC+AGG 0.416746 3_2:-81592155 None:intergenic
TTATGCTTTAGAAAGATAAC+AGG 0.421854 3_2:-81592332 None:intergenic
TATTGATAAGCTAAGGGATA+AGG 0.422341 3_2:-81591850 None:intergenic
CAGTGTAAAACAAGGATCAT+AGG 0.422790 3_2:-81591824 None:intergenic
AACTAGTGACATACCTTGTA+TGG 0.427244 3_2:-81591889 None:intergenic
ATCCTTTCTTTGTCTCTGGT+TGG 0.431773 3_2:-81593060 None:intergenic
CTTCCATTGAATCATATGTT+CGG 0.438349 3_2:+81591761 Msa0430020:five_prime_UTR
TTTCCGAACATATGATTCAA+TGG 0.438359 3_2:-81591764 None:intergenic
TGCAACTTCCACAAGAGGTT+CGG 0.443956 3_2:-81592253 None:intergenic
AATAATTTATTGATAAGCTA+AGG 0.448915 3_2:-81591857 None:intergenic
CTCTTCCACTTCTACAAAGA+TGG 0.449719 3_2:+81593018 Msa0430020:CDS
GATTTCTTCCGAACCTCTTG+TGG 0.457067 3_2:+81592245 Msa0430020:CDS
GATATGTATACTTTCCATGT+AGG 0.472363 3_2:+81593463 Msa0430020:three_prime_UTR
AGTCATAGAAAACTATATCT+TGG 0.473717 3_2:+81592035 Msa0430020:CDS
TATTGATTATTAACCATACA+AGG 0.478364 3_2:+81591876 Msa0430020:five_prime_UTR
AAGCCTTGTTGACATTCAAC+GGG 0.478995 3_2:-81592104 None:intergenic
ACATCATCATCATCTTCATC+AGG 0.492703 3_2:-81592128 None:intergenic
TTGAGCTAACTTCGAGCTCA+AGG 0.494823 3_2:+81593129 Msa0430020:exon
TGACTGTTGTACGTATAAAT+CGG 0.500257 3_2:+81593174 Msa0430020:three_prime_UTR
ACTAGATTAGTAGATGAGTC+TGG 0.500815 3_2:+81593357 Msa0430020:three_prime_UTR
CAAGCCTTGTTGACATTCAA+CGG 0.505128 3_2:-81592105 None:intergenic
AAGTTGCAAGTATATTGAGC+AGG 0.512637 3_2:+81592268 Msa0430020:CDS
CTACAAAGATGGAAAACTGT+TGG 0.519244 3_2:+81593029 Msa0430020:CDS
AAAATTCTAGATAAGTCTAA+AGG 0.519884 3_2:+81592200 Msa0430020:CDS
TCTAAGTCGTTCCGCAACCT+CGG 0.520659 3_2:-81592661 None:intergenic
AGTGTAAAACAAGGATCATA+GGG 0.526894 3_2:-81591823 None:intergenic
AACTGGATCTCTTGTTGTGG+TGG 0.529192 3_2:+81592223 Msa0430020:CDS
TGATGAAGAATCCGAGGTTG+CGG 0.530168 3_2:+81592650 Msa0430020:CDS
TATGATTCAATGGAAGAAGA+AGG 0.550164 3_2:-81591754 None:intergenic
AATACAGAAATCATGACAGC+TGG 0.550199 3_2:-81593439 None:intergenic
ATCTAATCTGACACTTAGAA+AGG 0.556672 3_2:-81591946 None:intergenic
ATAATTTATTGATAAGCTAA+GGG 0.559409 3_2:-81591856 None:intergenic
CATAGAAAACTATATCTTGG+TGG 0.559490 3_2:+81592038 Msa0430020:CDS
ACAAAGTGAATTAGGCTGAC+AGG 0.560513 3_2:-81593265 None:intergenic
TCCCAACCAGAGACAAAGAA+AGG 0.565898 3_2:+81593058 Msa0430020:CDS
ATACTTGCAACTTCCACAAG+AGG 0.567703 3_2:-81592258 None:intergenic
ATAGAAAACTATATCTTGGT+GGG 0.574832 3_2:+81592039 Msa0430020:CDS
TGGTACCTATTAATAAAATG+AGG 0.575324 3_2:+81592069 Msa0430020:CDS
AGTTGCAAGTATATTGAGCA+GGG 0.585364 3_2:+81592269 Msa0430020:CDS
TGAGCTAACTTCGAGCTCAA+GGG 0.585733 3_2:+81593130 Msa0430020:exon
CTTCAAGAGATGAGTACTTG+AGG 0.592510 3_2:-81593095 None:intergenic
AAGAGATGAGTACTTGAGGA+TGG 0.618825 3_2:-81593091 None:intergenic
TGAACTTAGAGCGTTCATGT+TGG 0.620966 3_2:-81591731 None:intergenic
TGCGGAACGACTTAGAATCA+GGG 0.632999 3_2:+81592668 Msa0430020:CDS
CTAACTTCGAGCTCAAGGGA+TGG 0.651893 3_2:+81593134 Msa0430020:exon
TCTTTGTAGAAGTGGAAGAG+AGG 0.655662 3_2:-81593015 None:intergenic
AGGAACTGGATCTCTTGTTG+TGG 0.658617 3_2:+81592220 Msa0430020:CDS
TATCCCGTTGAATGTCAACA+AGG 0.662409 3_2:+81592101 Msa0430020:CDS
ATACGTACAACAGTCATCGA+AGG 0.671294 3_2:-81593167 None:intergenic
AGATTGGAAATTCTAGACTG+AGG 0.672668 3_2:-81591987 None:intergenic
TAAGGTGTCAGTGTAAAACA+AGG 0.672939 3_2:-81591832 None:intergenic
TGAGTATGATGAAGAATCCG+AGG 0.729308 3_2:+81592644 Msa0430020:CDS
ATATCACAAAGGCAAAAGCG+CGG 0.738438 3_2:+81591699 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTTATTGATAAGCTAA+GGG - chr3_2:81591859-81591878 None:intergenic 15.0%
!! AATAATTTATTGATAAGCTA+AGG - chr3_2:81591860-81591879 None:intergenic 15.0%
!!! ATTATTCAATAAGTTGATTT+TGG - chr3_2:81592971-81592990 None:intergenic 15.0%
!! ATAATTTATTGATAAGCTAA+GGG - chr3_2:81591859-81591878 None:intergenic 15.0%
!! AATAATTTATTGATAAGCTA+AGG - chr3_2:81591860-81591879 None:intergenic 15.0%
!!! ATTATTCAATAAGTTGATTT+TGG - chr3_2:81592971-81592990 None:intergenic 15.0%
!!! TATTGATTATTAACCATACA+AGG + chr3_2:81591876-81591895 Msa0430020:five_prime_UTR 20.0%
!!! TTGTACCTCATTTTATTAAT+AGG - chr3_2:81592077-81592096 None:intergenic 20.0%
!! AAAATTCTAGATAAGTCTAA+AGG + chr3_2:81592200-81592219 Msa0430020:CDS 20.0%
!! ACTATTAGTTACAAATTAGT+TGG + chr3_2:81592406-81592425 Msa0430020:intron 20.0%
!! ATAATACAAATGTGATACAT+TGG - chr3_2:81592503-81592522 None:intergenic 20.0%
!! TTAGATATTTATAGCATGTA+GGG - chr3_2:81592932-81592951 None:intergenic 20.0%
!!! CTTTTGAAAAAGTTCTAATA+AGG - chr3_2:81593528-81593547 None:intergenic 20.0%
!!! TATTGATTATTAACCATACA+AGG + chr3_2:81591876-81591895 Msa0430020:five_prime_UTR 20.0%
!!! TTGTACCTCATTTTATTAAT+AGG - chr3_2:81592077-81592096 None:intergenic 20.0%
!! AAAATTCTAGATAAGTCTAA+AGG + chr3_2:81592200-81592219 Msa0430020:CDS 20.0%
!! ACTATTAGTTACAAATTAGT+TGG + chr3_2:81592406-81592425 Msa0430020:intron 20.0%
!! ATAATACAAATGTGATACAT+TGG - chr3_2:81592503-81592522 None:intergenic 20.0%
!! TTAGATATTTATAGCATGTA+GGG - chr3_2:81592932-81592951 None:intergenic 20.0%
!!! CTTTTGAAAAAGTTCTAATA+AGG - chr3_2:81593528-81593547 None:intergenic 20.0%
!! TATGTTCGGAAAATTCATTT+TGG + chr3_2:81591775-81591794 Msa0430020:five_prime_UTR 25.0%
! AGTCATAGAAAACTATATCT+TGG + chr3_2:81592035-81592054 Msa0430020:CDS 25.0%
! ATAGAAAACTATATCTTGGT+GGG + chr3_2:81592039-81592058 Msa0430020:CDS 25.0%
! TGGTACCTATTAATAAAATG+AGG + chr3_2:81592069-81592088 Msa0430020:CDS 25.0%
!!! TTATGCTTTAGAAAGATAAC+AGG - chr3_2:81592335-81592354 None:intergenic 25.0%
!! TATGGATTAAAAACTGTTAG+CGG + chr3_2:81592434-81592453 Msa0430020:intron 25.0%
! GTTAGATATTTATAGCATGT+AGG - chr3_2:81592933-81592952 None:intergenic 25.0%
! TAATAATCACAAACTAATGC+AGG + chr3_2:81592987-81593006 Msa0430020:intron 25.0%
! TAAAACCAGAAAAAGAGTAA+TGG + chr3_2:81593313-81593332 Msa0430020:three_prime_UTR 25.0%
! CATATAAAAAAGAACCTACA+TGG - chr3_2:81593480-81593499 None:intergenic 25.0%
!!! GAACTTTTTCAAAAGTTAGA+AGG + chr3_2:81593533-81593552 Msa0430020:three_prime_UTR 25.0%
!! TATGTTCGGAAAATTCATTT+TGG + chr3_2:81591775-81591794 Msa0430020:five_prime_UTR 25.0%
! AGTCATAGAAAACTATATCT+TGG + chr3_2:81592035-81592054 Msa0430020:CDS 25.0%
! ATAGAAAACTATATCTTGGT+GGG + chr3_2:81592039-81592058 Msa0430020:CDS 25.0%
! TGGTACCTATTAATAAAATG+AGG + chr3_2:81592069-81592088 Msa0430020:CDS 25.0%
!!! TTATGCTTTAGAAAGATAAC+AGG - chr3_2:81592335-81592354 None:intergenic 25.0%
!! TATGGATTAAAAACTGTTAG+CGG + chr3_2:81592434-81592453 Msa0430020:intron 25.0%
! GTTAGATATTTATAGCATGT+AGG - chr3_2:81592933-81592952 None:intergenic 25.0%
! TAATAATCACAAACTAATGC+AGG + chr3_2:81592987-81593006 Msa0430020:intron 25.0%
! TAAAACCAGAAAAAGAGTAA+TGG + chr3_2:81593313-81593332 Msa0430020:three_prime_UTR 25.0%
! CATATAAAAAAGAACCTACA+TGG - chr3_2:81593480-81593499 None:intergenic 25.0%
!!! GAACTTTTTCAAAAGTTAGA+AGG + chr3_2:81593533-81593552 Msa0430020:three_prime_UTR 25.0%
TATGATTCAATGGAAGAAGA+AGG - chr3_2:81591757-81591776 None:intergenic 30.0%
CTTCCATTGAATCATATGTT+CGG + chr3_2:81591761-81591780 Msa0430020:five_prime_UTR 30.0%
TTTCCGAACATATGATTCAA+TGG - chr3_2:81591767-81591786 None:intergenic 30.0%
AGTGTAAAACAAGGATCATA+GGG - chr3_2:81591826-81591845 None:intergenic 30.0%
TATTGATAAGCTAAGGGATA+AGG - chr3_2:81591853-81591872 None:intergenic 30.0%
ATCTAATCTGACACTTAGAA+AGG - chr3_2:81591949-81591968 None:intergenic 30.0%
!!! TTCCAATCTAGTTTTTAGCT+TGG + chr3_2:81592001-81592020 Msa0430020:CDS 30.0%
AACCAAGCTAAAAACTAGAT+TGG - chr3_2:81592006-81592025 None:intergenic 30.0%
! GATATAGTTTTCTATGACTG+TGG - chr3_2:81592034-81592053 None:intergenic 30.0%
CATAGAAAACTATATCTTGG+TGG + chr3_2:81592038-81592057 Msa0430020:CDS 30.0%
TTAACTGTTCAGTTTGTCTA+TGG + chr3_2:81592377-81592396 Msa0430020:intron 30.0%
!! ACAAATTAGTTGGTGACTTA+TGG + chr3_2:81592416-81592435 Msa0430020:intron 30.0%
ATCAATTACCTGCAATAAGA+GGG - chr3_2:81592625-81592644 None:intergenic 30.0%
AAACATGAAGATGATACTGA+TGG - chr3_2:81592736-81592755 None:intergenic 30.0%
CTTAGTATGCATTCAATTGA+TGG + chr3_2:81592813-81592832 Msa0430020:intron 30.0%
! GATGGATAATCTTGTTTCTT+AGG + chr3_2:81592831-81592850 Msa0430020:intron 30.0%
TGACTGTTGTACGTATAAAT+CGG + chr3_2:81593174-81593193 Msa0430020:three_prime_UTR 30.0%
! ATGGTACCTTTTAATGTTTG+CGG + chr3_2:81593332-81593351 Msa0430020:three_prime_UTR 30.0%
TAGTATCCGCAAACATTAAA+AGG - chr3_2:81593341-81593360 None:intergenic 30.0%
GATATGTATACTTTCCATGT+AGG + chr3_2:81593463-81593482 Msa0430020:three_prime_UTR 30.0%
TATGATTCAATGGAAGAAGA+AGG - chr3_2:81591757-81591776 None:intergenic 30.0%
CTTCCATTGAATCATATGTT+CGG + chr3_2:81591761-81591780 Msa0430020:five_prime_UTR 30.0%
TTTCCGAACATATGATTCAA+TGG - chr3_2:81591767-81591786 None:intergenic 30.0%
AGTGTAAAACAAGGATCATA+GGG - chr3_2:81591826-81591845 None:intergenic 30.0%
TATTGATAAGCTAAGGGATA+AGG - chr3_2:81591853-81591872 None:intergenic 30.0%
ATCTAATCTGACACTTAGAA+AGG - chr3_2:81591949-81591968 None:intergenic 30.0%
!!! TTCCAATCTAGTTTTTAGCT+TGG + chr3_2:81592001-81592020 Msa0430020:CDS 30.0%
AACCAAGCTAAAAACTAGAT+TGG - chr3_2:81592006-81592025 None:intergenic 30.0%
! GATATAGTTTTCTATGACTG+TGG - chr3_2:81592034-81592053 None:intergenic 30.0%
CATAGAAAACTATATCTTGG+TGG + chr3_2:81592038-81592057 Msa0430020:CDS 30.0%
TTAACTGTTCAGTTTGTCTA+TGG + chr3_2:81592377-81592396 Msa0430020:intron 30.0%
!! ACAAATTAGTTGGTGACTTA+TGG + chr3_2:81592416-81592435 Msa0430020:intron 30.0%
ATCAATTACCTGCAATAAGA+GGG - chr3_2:81592625-81592644 None:intergenic 30.0%
AAACATGAAGATGATACTGA+TGG - chr3_2:81592736-81592755 None:intergenic 30.0%
CTTAGTATGCATTCAATTGA+TGG + chr3_2:81592813-81592832 Msa0430020:intron 30.0%
! GATGGATAATCTTGTTTCTT+AGG + chr3_2:81592831-81592850 Msa0430020:intron 30.0%
TGACTGTTGTACGTATAAAT+CGG + chr3_2:81593174-81593193 Msa0430020:three_prime_UTR 30.0%
! ATGGTACCTTTTAATGTTTG+CGG + chr3_2:81593332-81593351 Msa0430020:three_prime_UTR 30.0%
TAGTATCCGCAAACATTAAA+AGG - chr3_2:81593341-81593360 None:intergenic 30.0%
GATATGTATACTTTCCATGT+AGG + chr3_2:81593463-81593482 Msa0430020:three_prime_UTR 30.0%
CAGTGTAAAACAAGGATCAT+AGG - chr3_2:81591827-81591846 None:intergenic 35.0%
! TAAGGTGTCAGTGTAAAACA+AGG - chr3_2:81591835-81591854 None:intergenic 35.0%
AACTAGTGACATACCTTGTA+TGG - chr3_2:81591892-81591911 None:intergenic 35.0%
AGATTGGAAATTCTAGACTG+AGG - chr3_2:81591990-81592009 None:intergenic 35.0%
ATATCTTGGTGGGACAAAAA+TGG + chr3_2:81592049-81592068 Msa0430020:CDS 35.0%
ACATCATCATCATCTTCATC+AGG - chr3_2:81592131-81592150 None:intergenic 35.0%
AATTCTCTCACACATTCAAC+AGG - chr3_2:81592158-81592177 None:intergenic 35.0%
CTAGATAAGTCTAAAGGAAC+TGG + chr3_2:81592206-81592225 Msa0430020:CDS 35.0%
AAGTTGCAAGTATATTGAGC+AGG + chr3_2:81592268-81592287 Msa0430020:CDS 35.0%
AGTTGCAAGTATATTGAGCA+GGG + chr3_2:81592269-81592288 Msa0430020:CDS 35.0%
CATCAATTACCTGCAATAAG+AGG - chr3_2:81592626-81592645 None:intergenic 35.0%
! GTTTTCCATCTTTGTAGAAG+TGG - chr3_2:81593026-81593045 None:intergenic 35.0%
CTACAAAGATGGAAAACTGT+TGG + chr3_2:81593029-81593048 Msa0430020:CDS 35.0%
AACAATCCTTTCTTTGTCTC+TGG - chr3_2:81593067-81593086 None:intergenic 35.0%
TCAGCCTAATTCACTTTGTT+GGG + chr3_2:81593269-81593288 Msa0430020:three_prime_UTR 35.0%
ACTTCCCAACAAAGTGAATT+AGG - chr3_2:81593276-81593295 None:intergenic 35.0%
!! TGGTTTTACAAACTCTACAC+TGG - chr3_2:81593301-81593320 None:intergenic 35.0%
! AGGTACCATTACTCTTTTTC+TGG - chr3_2:81593321-81593340 None:intergenic 35.0%
ACTAGATTAGTAGATGAGTC+TGG + chr3_2:81593357-81593376 Msa0430020:three_prime_UTR 35.0%
AATACAGAAATCATGACAGC+TGG - chr3_2:81593442-81593461 None:intergenic 35.0%
CAGTGTAAAACAAGGATCAT+AGG - chr3_2:81591827-81591846 None:intergenic 35.0%
! TAAGGTGTCAGTGTAAAACA+AGG - chr3_2:81591835-81591854 None:intergenic 35.0%
AACTAGTGACATACCTTGTA+TGG - chr3_2:81591892-81591911 None:intergenic 35.0%
AGATTGGAAATTCTAGACTG+AGG - chr3_2:81591990-81592009 None:intergenic 35.0%
ATATCTTGGTGGGACAAAAA+TGG + chr3_2:81592049-81592068 Msa0430020:CDS 35.0%
ACATCATCATCATCTTCATC+AGG - chr3_2:81592131-81592150 None:intergenic 35.0%
AATTCTCTCACACATTCAAC+AGG - chr3_2:81592158-81592177 None:intergenic 35.0%
CTAGATAAGTCTAAAGGAAC+TGG + chr3_2:81592206-81592225 Msa0430020:CDS 35.0%
AAGTTGCAAGTATATTGAGC+AGG + chr3_2:81592268-81592287 Msa0430020:CDS 35.0%
AGTTGCAAGTATATTGAGCA+GGG + chr3_2:81592269-81592288 Msa0430020:CDS 35.0%
CATCAATTACCTGCAATAAG+AGG - chr3_2:81592626-81592645 None:intergenic 35.0%
! GTTTTCCATCTTTGTAGAAG+TGG - chr3_2:81593026-81593045 None:intergenic 35.0%
CTACAAAGATGGAAAACTGT+TGG + chr3_2:81593029-81593048 Msa0430020:CDS 35.0%
AACAATCCTTTCTTTGTCTC+TGG - chr3_2:81593067-81593086 None:intergenic 35.0%
TCAGCCTAATTCACTTTGTT+GGG + chr3_2:81593269-81593288 Msa0430020:three_prime_UTR 35.0%
ACTTCCCAACAAAGTGAATT+AGG - chr3_2:81593276-81593295 None:intergenic 35.0%
!! TGGTTTTACAAACTCTACAC+TGG - chr3_2:81593301-81593320 None:intergenic 35.0%
! AGGTACCATTACTCTTTTTC+TGG - chr3_2:81593321-81593340 None:intergenic 35.0%
ACTAGATTAGTAGATGAGTC+TGG + chr3_2:81593357-81593376 Msa0430020:three_prime_UTR 35.0%
AATACAGAAATCATGACAGC+TGG - chr3_2:81593442-81593461 None:intergenic 35.0%
! TGAACTTAGAGCGTTCATGT+TGG - chr3_2:81591734-81591753 None:intergenic 40.0%
TATCCCGTTGAATGTCAACA+AGG + chr3_2:81592101-81592120 Msa0430020:CDS 40.0%
!! AAGCCTTGTTGACATTCAAC+GGG - chr3_2:81592107-81592126 None:intergenic 40.0%
!! CAAGCCTTGTTGACATTCAA+CGG - chr3_2:81592108-81592127 None:intergenic 40.0%
ATACTTGCAACTTCCACAAG+AGG - chr3_2:81592261-81592280 None:intergenic 40.0%
GCAAAGTTGTGCAAGAAATC+TGG + chr3_2:81592296-81592315 Msa0430020:CDS 40.0%
CTGTTCAGTTTGTCTATGGT+TGG + chr3_2:81592381-81592400 Msa0430020:intron 40.0%
TATCACTTCCCTCTTATTGC+AGG + chr3_2:81592614-81592633 Msa0430020:intron 40.0%
TGAGTATGATGAAGAATCCG+AGG + chr3_2:81592644-81592663 Msa0430020:CDS 40.0%
CATGAAGATGATACTGATGG+CGG - chr3_2:81592733-81592752 None:intergenic 40.0%
TCTTTGTAGAAGTGGAAGAG+AGG - chr3_2:81593018-81593037 None:intergenic 40.0%
CTCTTCCACTTCTACAAAGA+TGG + chr3_2:81593018-81593037 Msa0430020:CDS 40.0%
TCCTTTCTTTGTCTCTGGTT+GGG - chr3_2:81593062-81593081 None:intergenic 40.0%
ATCCTTTCTTTGTCTCTGGT+TGG - chr3_2:81593063-81593082 None:intergenic 40.0%
AAGAGATGAGTACTTGAGGA+TGG - chr3_2:81593094-81593113 None:intergenic 40.0%
CTTCAAGAGATGAGTACTTG+AGG - chr3_2:81593098-81593117 None:intergenic 40.0%
ATACGTACAACAGTCATCGA+AGG - chr3_2:81593170-81593189 None:intergenic 40.0%
ACAAAGTGAATTAGGCTGAC+AGG - chr3_2:81593268-81593287 None:intergenic 40.0%
GTCAGCCTAATTCACTTTGT+TGG + chr3_2:81593268-81593287 Msa0430020:three_prime_UTR 40.0%
! TGAACTTAGAGCGTTCATGT+TGG - chr3_2:81591734-81591753 None:intergenic 40.0%
TATCCCGTTGAATGTCAACA+AGG + chr3_2:81592101-81592120 Msa0430020:CDS 40.0%
!! AAGCCTTGTTGACATTCAAC+GGG - chr3_2:81592107-81592126 None:intergenic 40.0%
!! CAAGCCTTGTTGACATTCAA+CGG - chr3_2:81592108-81592127 None:intergenic 40.0%
ATACTTGCAACTTCCACAAG+AGG - chr3_2:81592261-81592280 None:intergenic 40.0%
GCAAAGTTGTGCAAGAAATC+TGG + chr3_2:81592296-81592315 Msa0430020:CDS 40.0%
CTGTTCAGTTTGTCTATGGT+TGG + chr3_2:81592381-81592400 Msa0430020:intron 40.0%
TATCACTTCCCTCTTATTGC+AGG + chr3_2:81592614-81592633 Msa0430020:intron 40.0%
TGAGTATGATGAAGAATCCG+AGG + chr3_2:81592644-81592663 Msa0430020:CDS 40.0%
CATGAAGATGATACTGATGG+CGG - chr3_2:81592733-81592752 None:intergenic 40.0%
TCTTTGTAGAAGTGGAAGAG+AGG - chr3_2:81593018-81593037 None:intergenic 40.0%
CTCTTCCACTTCTACAAAGA+TGG + chr3_2:81593018-81593037 Msa0430020:CDS 40.0%
TCCTTTCTTTGTCTCTGGTT+GGG - chr3_2:81593062-81593081 None:intergenic 40.0%
ATCCTTTCTTTGTCTCTGGT+TGG - chr3_2:81593063-81593082 None:intergenic 40.0%
AAGAGATGAGTACTTGAGGA+TGG - chr3_2:81593094-81593113 None:intergenic 40.0%
CTTCAAGAGATGAGTACTTG+AGG - chr3_2:81593098-81593117 None:intergenic 40.0%
ATACGTACAACAGTCATCGA+AGG - chr3_2:81593170-81593189 None:intergenic 40.0%
ACAAAGTGAATTAGGCTGAC+AGG - chr3_2:81593268-81593287 None:intergenic 40.0%
GTCAGCCTAATTCACTTTGT+TGG + chr3_2:81593268-81593287 Msa0430020:three_prime_UTR 40.0%
AGGAACTGGATCTCTTGTTG+TGG + chr3_2:81592220-81592239 Msa0430020:CDS 45.0%
! AACTGGATCTCTTGTTGTGG+TGG + chr3_2:81592223-81592242 Msa0430020:CDS 45.0%
GATTTCTTCCGAACCTCTTG+TGG + chr3_2:81592245-81592264 Msa0430020:CDS 45.0%
TGCAACTTCCACAAGAGGTT+CGG - chr3_2:81592256-81592275 None:intergenic 45.0%
TGATGAAGAATCCGAGGTTG+CGG + chr3_2:81592650-81592669 Msa0430020:CDS 45.0%
TTGCGGAACGACTTAGAATC+AGG + chr3_2:81592667-81592686 Msa0430020:CDS 45.0%
TGCGGAACGACTTAGAATCA+GGG + chr3_2:81592668-81592687 Msa0430020:CDS 45.0%
TCCCAACCAGAGACAAAGAA+AGG + chr3_2:81593058-81593077 Msa0430020:CDS 45.0%
TTGAGCTAACTTCGAGCTCA+AGG + chr3_2:81593129-81593148 Msa0430020:exon 45.0%
TGAGCTAACTTCGAGCTCAA+GGG + chr3_2:81593130-81593149 Msa0430020:exon 45.0%
! GAATCCAAAACCGCGCTTTT+TGG - chr3_2:81591712-81591731 None:intergenic 45.0%
AGGAACTGGATCTCTTGTTG+TGG + chr3_2:81592220-81592239 Msa0430020:CDS 45.0%
! AACTGGATCTCTTGTTGTGG+TGG + chr3_2:81592223-81592242 Msa0430020:CDS 45.0%
GATTTCTTCCGAACCTCTTG+TGG + chr3_2:81592245-81592264 Msa0430020:CDS 45.0%
TGCAACTTCCACAAGAGGTT+CGG - chr3_2:81592256-81592275 None:intergenic 45.0%
TGATGAAGAATCCGAGGTTG+CGG + chr3_2:81592650-81592669 Msa0430020:CDS 45.0%
TTGCGGAACGACTTAGAATC+AGG + chr3_2:81592667-81592686 Msa0430020:CDS 45.0%
TGCGGAACGACTTAGAATCA+GGG + chr3_2:81592668-81592687 Msa0430020:CDS 45.0%
TCCCAACCAGAGACAAAGAA+AGG + chr3_2:81593058-81593077 Msa0430020:CDS 45.0%
TTGAGCTAACTTCGAGCTCA+AGG + chr3_2:81593129-81593148 Msa0430020:exon 45.0%
TGAGCTAACTTCGAGCTCAA+GGG + chr3_2:81593130-81593149 Msa0430020:exon 45.0%
TCTAAGTCGTTCCGCAACCT+CGG - chr3_2:81592664-81592683 None:intergenic 50.0%
CTAACTTCGAGCTCAAGGGA+TGG + chr3_2:81593134-81593153 Msa0430020:exon 50.0%
TCTAAGTCGTTCCGCAACCT+CGG - chr3_2:81592664-81592683 None:intergenic 50.0%
CTAACTTCGAGCTCAAGGGA+TGG + chr3_2:81593134-81593153 Msa0430020:exon 50.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 81591712 81593570 81591712 ID=Msa0430020;Name=Msa0430020
chr3_2 mRNA 81591712 81593570 81591712 ID=Msa0430020-mRNA-1;Parent=Msa0430020;Name=Msa0430020-mRNA-1;_AED=0.10;_eAED=0.10;_QI=188|1|1|1|1|1|3|433|212
chr3_2 exon 81591712 81592355 81591712 ID=Msa0430020-mRNA-1:exon:22563;Parent=Msa0430020-mRNA-1
chr3_2 exon 81592636 81592689 81592636 ID=Msa0430020-mRNA-1:exon:22564;Parent=Msa0430020-mRNA-1
chr3_2 exon 81593009 81593570 81593009 ID=Msa0430020-mRNA-1:exon:22565;Parent=Msa0430020-mRNA-1
chr3_2 five_prime_UTR 81591712 81591899 81591712 ID=Msa0430020-mRNA-1:five_prime_utr;Parent=Msa0430020-mRNA-1
chr3_2 CDS 81591900 81592355 81591900 ID=Msa0430020-mRNA-1:cds;Parent=Msa0430020-mRNA-1
chr3_2 CDS 81592636 81592689 81592636 ID=Msa0430020-mRNA-1:cds;Parent=Msa0430020-mRNA-1
chr3_2 CDS 81593009 81593137 81593009 ID=Msa0430020-mRNA-1:cds;Parent=Msa0430020-mRNA-1
chr3_2 three_prime_UTR 81593138 81593570 81593138 ID=Msa0430020-mRNA-1:three_prime_utr;Parent=Msa0430020-mRNA-1
Gene Sequence

>Msa0430020

ATGTCACTAGTTGTCATTCAGCAGCAGAATATTCTGCATACAAAGTCCTTTCTAAGTGTCAGATTAGATCTGTACTTAAACAAACAACCTCAGTCTAGAATTTCCAATCTAGTTTTTAGCTTGGTTTCTAACCACAGTCATAGAAAACTATATCTTGGTGGGACAAAAATGGTACCTATTAATAAAATGAGGTACAATTTCTATCCCGTTGAATGTCAACAAGGCTTGCCTGATGAAGATGATGATGATGTCTGTCCTGTTGAATGTGTGAGAGAATTCAAGACTGATGAAGAGTTCTTGAAAATTCTAGATAAGTCTAAAGGAACTGGATCTCTTGTTGTGGTGGATTTCTTCCGAACCTCTTGTGGAAGTTGCAAGTATATTGAGCAGGGTTTTGCAAAGTTGTGCAAGAAATCTGGTAGCAATGATGTTCCTGTTATCTTTCTAAAGCATAATGTAATTGATGAGTATGATGAAGAATCCGAGGTTGCGGAACGACTTAGAATCAGGGCAGTGCCTCTCTTCCACTTCTACAAAGATGGAAAACTGTTGGAAGCATTCCCAACCAGAGACAAAGAAAGGATTGTTGCTGCCATCCTCAAGTACTCATCTCTTGAAGCAGAAGATATTTTGAGCTAA

Protein sequence

>Msa0430020

MSLVVIQQQNILHTKSFLSVRLDLYLNKQPQSRISNLVFSLVSNHSHRKLYLGGTKMVPINKMRYNFYPVECQQGLPDEDDDDVCPVECVREFKTDEEFLKILDKSKGTGSLVVVDFFRTSCGSCKYIEQGFAKLCKKSGSNDVPVIFLKHNVIDEYDEESEVAERLRIRAVPLFHFYKDGKLLEAFPTRDKERIVAAILKYSSLEAEDILS*