AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0362840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0362840 MtrunA17_Chr3g0101881 94.681 188 10 0 1 188 1 188 7.14e-115 324
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0362840 AT3G13120.3 64.398 191 65 1 1 188 1 191 5.48e-75 224
Msa0362840 AT3G13120.2 64.398 191 65 1 1 188 1 191 5.48e-75 224
Msa0362840 AT3G13120.1 64.398 191 65 1 1 188 1 191 5.48e-75 224

Find 42 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCTTTGTGCTTTGTTTC+TGG 0.060318 3_1:-54593260 Msa0362840:CDS
ATAAATCCATGTGCATAATT+TGG 0.219282 3_1:+54590588 None:intergenic
GACACAGTGAATTCGCTTCT+TGG 0.315569 3_1:+54591035 None:intergenic
ACCTCAGAATTCAAAGCTTC+AGG 0.320276 3_1:+54593176 None:intergenic
TGCATCCAGTATCTGCTTGC+AGG 0.346889 3_1:+54591104 None:intergenic
GCTCTAAATATATTTGCTTC+AGG 0.347187 3_1:-54590863 Msa0362840:exon
TGTGTACGTGTGGAGATTTA+AGG 0.348074 3_1:+54591013 None:intergenic
AAGCACAAAGATTGAAGCTT+TGG 0.358455 3_1:+54593269 None:intergenic
AAACTAACAAAATGATCATT+TGG 0.362526 3_1:+54590729 None:intergenic
GGATTCCTGCAAGCAGATAC+TGG 0.366808 3_1:-54591109 Msa0362840:CDS
AGATAACAATGGTGAAGAAT+TGG 0.371117 3_1:+54593298 None:intergenic
ACAACAGTTGATAACTTAAG+AGG 0.390677 3_1:+54593209 None:intergenic
CTTCAGAGAGTTTGTTTCAA+TGG 0.392816 3_1:-54593369 Msa0362840:exon
TTCTCATTATGTTGTCATCT+AGG 0.397505 3_1:-54590707 Msa0362840:three_prime_UTR
TTCTTGGTTGGTAAAGGAAC+AGG 0.402200 3_1:+54591051 None:intergenic
AGACTTACATTACATTGAAT+AGG 0.410551 3_1:+54590640 None:intergenic
GAATCTATTGTTTGTGCTGT+AGG 0.413081 3_1:+54590931 None:intergenic
AACTTCAACTTCCTAGTAAT+AGG 0.416007 3_1:-54590815 Msa0362840:three_prime_UTR
GCAAATATCTATGTGACAAC+AGG 0.420997 3_1:+54590667 None:intergenic
TTACTTGGTCCCCTTGATAG+AGG 0.436195 3_1:-54591130 Msa0362840:CDS
AATCAAGCTTAGATCTTACT+TGG 0.443706 3_1:-54591145 Msa0362840:CDS
TCGACTCATTTCCTATTACT+AGG 0.459472 3_1:+54590804 None:intergenic
ATTCGCTTCTTGGTTGGTAA+AGG 0.474280 3_1:+54591045 None:intergenic
ATGCAGCTTGATCTTCCTGC+TGG 0.477604 3_1:-54590904 Msa0362840:CDS
GATGAGTTCTGATCTCGAAA+TGG 0.486839 3_1:+54590977 None:intergenic
CTTGCAGGAATCCTCTATCA+AGG 0.519406 3_1:+54591119 None:intergenic
CAGTGAATTCGCTTCTTGGT+TGG 0.546112 3_1:+54591039 None:intergenic
TTGTTTCTGGTAACACGTTG+AGG 0.552159 3_1:-54593247 Msa0362840:CDS
ACTTCGACATCAACGCCAGC+AGG 0.555474 3_1:+54590889 None:intergenic
CATTGGGGATAATGCAGACA+TGG 0.557328 3_1:-54592523 Msa0362840:intron
CACACGTACACAAGGATGCT+CGG 0.558591 3_1:-54591002 Msa0362840:CDS
AAAGAAATACATTCAGAGAG+TGG 0.565246 3_1:+54590759 None:intergenic
TTAAGACAGAAAATATGTTG+TGG 0.573239 3_1:+54590539 None:intergenic
TCCTGAAGCTTTGAATTCTG+AGG 0.574072 3_1:-54593177 Msa0362840:intron
ATTCTTCCAAATTATGCACA+TGG 0.574714 3_1:-54590594 Msa0362840:three_prime_UTR
TTGGAAGAGACAGAAAGAGA+AGG 0.576021 3_1:+54593317 None:intergenic
TTGCAGGAATCCTCTATCAA+GGG 0.586905 3_1:+54591120 None:intergenic
TTTGGCTTTGAAGATAACAA+TGG 0.593808 3_1:+54593287 None:intergenic
CGAGCATCCTTGTGTACGTG+TGG 0.612723 3_1:+54591003 None:intergenic
ATAGGAAATGAGTCGATACT+CGG 0.624257 3_1:-54590797 Msa0362840:three_prime_UTR
TAAATCTCCACACGTACACA+AGG 0.632451 3_1:-54591010 Msa0362840:CDS
TGCAGGAATCCTCTATCAAG+GGG 0.633408 3_1:+54591121 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTATGGAAATTATTTA+AGG - chr3_1:54591161-54591180 Msa0362840:CDS 10.0%
!! TTATTTAAGGAAATTATTTA+TGG - chr3_1:54591174-54591193 Msa0362840:intron 10.0%
!! TTATTTATGGAAATTATTTA+AGG - chr3_1:54591161-54591180 Msa0362840:CDS 10.0%
!! AAAAATATATCACATTAATT+CGG + chr3_1:54591918-54591937 None:intergenic 10.0%
!!! GAATATTGATTTTGTTTAAT+TGG - chr3_1:54590856-54590875 Msa0362840:three_prime_UTR 15.0%
!! AAAATATATCACATTAATTC+GGG + chr3_1:54591917-54591936 None:intergenic 15.0%
!! AACAGTGAAATAATAAAATA+AGG + chr3_1:54592091-54592110 None:intergenic 15.0%
!!! TATTTTATTATTTCACTGTT+TGG - chr3_1:54592091-54592110 Msa0362840:intron 15.0%
!! AAAAAAAATGCATTAAAATC+TGG + chr3_1:54592368-54592387 None:intergenic 15.0%
!!! ATTGATTTTGTTTAATTGGT+TGG - chr3_1:54590860-54590879 Msa0362840:exon 20.0%
!! TTGAGTATAAAATTCAATTC+TGG - chr3_1:54590952-54590971 Msa0362840:CDS 20.0%
!! AAATTACCTATGCTAAAAAT+TGG + chr3_1:54590989-54591008 None:intergenic 20.0%
!! TTGAACATATGAAAAACTAT+GGG - chr3_1:54591102-54591121 Msa0362840:CDS 20.0%
!! TTATTTGCAGTTTAATATGT+TGG - chr3_1:54591259-54591278 Msa0362840:intron 20.0%
!! TAAGTGTATATGAATTTCAT+TGG - chr3_1:54591282-54591301 Msa0362840:intron 20.0%
!!! ATGTTTTAACTCAATTTAGT+TGG - chr3_1:54591347-54591366 Msa0362840:intron 20.0%
!! ACATATTAAATGACTGAAAA+TGG + chr3_1:54591549-54591568 None:intergenic 20.0%
!! ACAGATAAGTTATAACTTAT+AGG + chr3_1:54592725-54592744 None:intergenic 20.0%
!! TATAAGTTATAACTTATCTG+TGG - chr3_1:54592724-54592743 Msa0362840:intron 20.0%
!! AAACTAACAAAATGATCATT+TGG + chr3_1:54593239-54593258 None:intergenic 20.0%
! CAATACAAACATGAAGAAAA+GGG + chr3_1:54590817-54590836 None:intergenic 25.0%
! ACAATACAAACATGAAGAAA+AGG + chr3_1:54590818-54590837 None:intergenic 25.0%
! GTTGAACATATGAAAAACTA+TGG - chr3_1:54591101-54591120 Msa0362840:CDS 25.0%
! TGAACATATGAAAAACTATG+GGG - chr3_1:54591103-54591122 Msa0362840:CDS 25.0%
! TAAAACATTCAGAAAAACGT+AGG + chr3_1:54591335-54591354 None:intergenic 25.0%
!!! GATTTGCTATTTTCAATAGT+TGG - chr3_1:54591475-54591494 Msa0362840:intron 25.0%
!! GGTTTATATTTGTTTGCTTT+TGG - chr3_1:54591496-54591515 Msa0362840:intron 25.0%
!!! TTATATTTGTTTGCTTTTGG+AGG - chr3_1:54591499-54591518 Msa0362840:intron 25.0%
! ATGTAATAGCAATGAAATCA+TGG - chr3_1:54591565-54591584 Msa0362840:intron 25.0%
! TGTAATAGCAATGAAATCAT+GGG - chr3_1:54591566-54591585 Msa0362840:intron 25.0%
! TTACAAATTGAGTGTATGTT+TGG + chr3_1:54591701-54591720 None:intergenic 25.0%
! TGTTTGATAAGTCAAGTAAT+AGG - chr3_1:54591725-54591744 Msa0362840:intron 25.0%
!! TTTTTGGATGAAAAAAGTGA+TGG + chr3_1:54592008-54592027 None:intergenic 25.0%
!! TTTTTCATCCAAAAAATCGA+AGG - chr3_1:54592013-54592032 Msa0362840:intron 25.0%
! AGCTTACATTGTTAATGAAA+AGG - chr3_1:54592040-54592059 Msa0362840:intron 25.0%
! AGAATGAAAACAGCTAAATA+GGG + chr3_1:54592184-54592203 None:intergenic 25.0%
! AAGAATGAAAACAGCTAAAT+AGG + chr3_1:54592185-54592204 None:intergenic 25.0%
!! GAGTTAACTGATGATTTTTA+TGG - chr3_1:54592679-54592698 Msa0362840:intron 25.0%
!! TTAACTGATGATTTTTATGG+AGG - chr3_1:54592682-54592701 Msa0362840:intron 25.0%
!!! TGTTTCTTCGAATTTTTAGA+TGG - chr3_1:54592778-54592797 Msa0362840:intron 25.0%
! AGACTTACATTACATTGAAT+AGG + chr3_1:54593328-54593347 None:intergenic 25.0%
! ATAAATCCATGTGCATAATT+TGG + chr3_1:54593380-54593399 None:intergenic 25.0%
AGATAACAATGGTGAAGAAT+TGG + chr3_1:54590670-54590689 None:intergenic 30.0%
!! TTTGGCTTTGAAGATAACAA+TGG + chr3_1:54590681-54590700 None:intergenic 30.0%
!! ACAACAGTTGATAACTTAAG+AGG + chr3_1:54590759-54590778 None:intergenic 30.0%
CTTCATGTTTGTATTGTGTT+TGG - chr3_1:54590821-54590840 Msa0362840:three_prime_UTR 30.0%
! TGGTTCTGTAGTAACAAAAA+TGG - chr3_1:54590880-54590899 Msa0362840:CDS 30.0%
!!! AAAGCTCCAATTTTTAGCAT+AGG - chr3_1:54590980-54590999 Msa0362840:CDS 30.0%
!! AAAGCATTGAGAAAATTCCT+AGG + chr3_1:54591054-54591073 None:intergenic 30.0%
! TAGGAATTTTCTCAATGCTT+TGG - chr3_1:54591053-54591072 Msa0362840:CDS 30.0%
GAACATATGAAAAACTATGG+GGG - chr3_1:54591104-54591123 Msa0362840:CDS 30.0%
AGGGGAATGGAAATTATTTA+TGG - chr3_1:54591148-54591167 Msa0362840:CDS 30.0%
GAAATTATTTAAGGAGACAC+TGG - chr3_1:54591196-54591215 Msa0362840:intron 30.0%
GAGGGAATGGAAATTATTTA+TGG - chr3_1:54591222-54591241 Msa0362840:intron 30.0%
TCTTTGTGATGAAAATGTCT+TGG - chr3_1:54591372-54591391 Msa0362840:intron 30.0%
!!! GAAAATGTCTTGGTGTTTTT+AGG - chr3_1:54591382-54591401 Msa0362840:intron 30.0%
AATTGAGTGTATGTTTGGAT+TGG + chr3_1:54591696-54591715 None:intergenic 30.0%
! AGCTTTTACCTTCGATTTTT+TGG + chr3_1:54592024-54592043 None:intergenic 30.0%
TGTTAATGAAAAGGAACTGA+AGG - chr3_1:54592049-54592068 Msa0362840:intron 30.0%
TGTAAATGAAAAAGCCGAAA+GGG + chr3_1:54592161-54592180 None:intergenic 30.0%
AATAAGGTGCATATAGAGTA+AGG + chr3_1:54592225-54592244 None:intergenic 30.0%
TACTCTATATGCACCTTATT+TGG - chr3_1:54592225-54592244 Msa0362840:intron 30.0%
! TATATGCACCTTATTTGGTT+TGG - chr3_1:54592230-54592249 Msa0362840:intron 30.0%
TGATAAAGCCAAACCAAATA+AGG + chr3_1:54592241-54592260 None:intergenic 30.0%
AATGTTTCAGAAGAATGGAT+GGG + chr3_1:54592269-54592288 None:intergenic 30.0%
AATCCAATGTTTCAGAAGAA+TGG + chr3_1:54592274-54592293 None:intergenic 30.0%
!! TTCTTCTGAAACATTGGATT+TGG - chr3_1:54592274-54592293 Msa0362840:intron 30.0%
GGTAATAAAAAAGAGGGAAA+AGG - chr3_1:54592556-54592575 Msa0362840:CDS 30.0%
! TTGATTCTGATTTTCTGCTT+TGG + chr3_1:54592806-54592825 None:intergenic 30.0%
AATCAAGCTTAGATCTTACT+TGG - chr3_1:54592820-54592839 Msa0362840:intron 30.0%
AACTACCAATGCAAAAACAA+TGG - chr3_1:54592889-54592908 Msa0362840:intron 30.0%
ACTACCAATGCAAAAACAAT+GGG - chr3_1:54592890-54592909 Msa0362840:intron 30.0%
! GCTCTAAATATATTTGCTTC+AGG - chr3_1:54593102-54593121 Msa0362840:intron 30.0%
AACTTCAACTTCCTAGTAAT+AGG - chr3_1:54593150-54593169 Msa0362840:intron 30.0%
AAAGAAATACATTCAGAGAG+TGG + chr3_1:54593209-54593228 None:intergenic 30.0%
TTCTCATTATGTTGTCATCT+AGG - chr3_1:54593258-54593277 Msa0362840:CDS 30.0%
ATTCTTCCAAATTATGCACA+TGG - chr3_1:54593371-54593390 Msa0362840:exon 30.0%
! CTTCAGAGAGTTTGTTTCAA+TGG - chr3_1:54590596-54590615 Msa0362840:three_prime_UTR 35.0%
AAGCACAAAGATTGAAGCTT+TGG + chr3_1:54590699-54590718 None:intergenic 35.0%
!! CAATCTTTGTGCTTTGTTTC+TGG - chr3_1:54590705-54590724 Msa0362840:three_prime_UTR 35.0%
GTTACATGTAATGAGTACCT+AGG - chr3_1:54591034-54591053 Msa0362840:CDS 35.0%
TGAATTTGCAGACATTGGAA+AGG - chr3_1:54591128-54591147 Msa0362840:CDS 35.0%
GAATTTGCAGACATTGGAAA+GGG - chr3_1:54591129-54591148 Msa0362840:CDS 35.0%
AATTTGCAGACATTGGAAAG+GGG - chr3_1:54591130-54591149 Msa0362840:CDS 35.0%
AAACGTAGGTCAATCTAAAC+CGG + chr3_1:54591321-54591340 None:intergenic 35.0%
!!! GTGTTTTTAGGTTGATGACT+TGG - chr3_1:54591394-54591413 Msa0362840:intron 35.0%
! ATGCTAATTTTTGACGTGCT+TGG + chr3_1:54591425-54591444 None:intergenic 35.0%
AGCACGTCAAAAATTAGCAT+TGG - chr3_1:54591425-54591444 Msa0362840:intron 35.0%
GCACGTCAAAAATTAGCATT+GGG - chr3_1:54591426-54591445 Msa0362840:intron 35.0%
CACGTCAAAAATTAGCATTG+GGG - chr3_1:54591427-54591446 Msa0362840:intron 35.0%
!! TTTTGGAGGCTTCTTATATG+TGG - chr3_1:54591513-54591532 Msa0362840:intron 35.0%
! TTAGTGCATCTTTGGATTAG+CGG - chr3_1:54591594-54591613 Msa0362840:intron 35.0%
! ATGATTTGGCAAAATTGCAG+TGG + chr3_1:54591643-54591662 None:intergenic 35.0%
! ACTGCAATTTTGCCAAATCA+TGG - chr3_1:54591642-54591661 Msa0362840:intron 35.0%
! CTATGCCATACTTTTGACAA+GGG + chr3_1:54591792-54591811 None:intergenic 35.0%
! ACTATGCCATACTTTTGACA+AGG + chr3_1:54591793-54591812 None:intergenic 35.0%
TATGGCATAGTTTCAGAACA+AGG - chr3_1:54591802-54591821 Msa0362840:intron 35.0%
GTTTCAGAACAAGGTTACAT+TGG - chr3_1:54591811-54591830 Msa0362840:intron 35.0%
AAGGGTAAGTGAAAGACTTT+GGG + chr3_1:54592143-54592162 None:intergenic 35.0%
AAAGGGTAAGTGAAAGACTT+TGG + chr3_1:54592144-54592163 None:intergenic 35.0%
AAGTCTTTCACTTACCCTTT+CGG - chr3_1:54592144-54592163 Msa0362840:intron 35.0%
GTGTAAATGAAAAAGCCGAA+AGG + chr3_1:54592162-54592181 None:intergenic 35.0%
!! TAGCTGTTTTCATTCTTCTG+AGG - chr3_1:54592188-54592207 Msa0362840:intron 35.0%
!! AGCTGTTTTCATTCTTCTGA+GGG - chr3_1:54592189-54592208 Msa0362840:intron 35.0%
CAATGTTTCAGAAGAATGGA+TGG + chr3_1:54592270-54592289 None:intergenic 35.0%
!! CATCCATTCTTCTGAAACAT+TGG - chr3_1:54592268-54592287 Msa0362840:intron 35.0%
TCCTGAGGGTAATAAAAAAG+AGG - chr3_1:54592549-54592568 Msa0362840:CDS 35.0%
CCTGAGGGTAATAAAAAAGA+GGG - chr3_1:54592550-54592569 Msa0362840:CDS 35.0%
TAGTCATCATCCAATTTCCA+TGG - chr3_1:54592632-54592651 Msa0362840:intron 35.0%
GAATCTATTGTTTGTGCTGT+AGG + chr3_1:54593037-54593056 None:intergenic 35.0%
TCGACTCATTTCCTATTACT+AGG + chr3_1:54593164-54593183 None:intergenic 35.0%
ATAGGAAATGAGTCGATACT+CGG - chr3_1:54593168-54593187 Msa0362840:intron 35.0%
GCAAATATCTATGTGACAAC+AGG + chr3_1:54593301-54593320 None:intergenic 35.0%
TTGGAAGAGACAGAAAGAGA+AGG + chr3_1:54590651-54590670 None:intergenic 40.0%
!! TTGTTTCTGGTAACACGTTG+AGG - chr3_1:54590718-54590737 Msa0362840:three_prime_UTR 40.0%
!! TCCTGAAGCTTTGAATTCTG+AGG - chr3_1:54590788-54590807 Msa0362840:three_prime_UTR 40.0%
ACCTCAGAATTCAAAGCTTC+AGG + chr3_1:54590792-54590811 None:intergenic 40.0%
TTTAAGGAGACACTGGAAAG+AGG - chr3_1:54591203-54591222 Msa0362840:intron 40.0%
TTAAGGAGACACTGGAAAGA+GGG - chr3_1:54591204-54591223 Msa0362840:intron 40.0%
!! GGGACATTTTAGTGCATCTT+TGG - chr3_1:54591586-54591605 Msa0362840:intron 40.0%
TGAGTTAGGCAAAATCACAC+TGG + chr3_1:54591670-54591689 None:intergenic 40.0%
! TGAGTGTATGTTTGGATTGG+CGG + chr3_1:54591693-54591712 None:intergenic 40.0%
ATGTTTCACTGCTGAGTAAC+TGG + chr3_1:54591764-54591783 None:intergenic 40.0%
ATGCTCCCTTGTCAAAAGTA+TGG - chr3_1:54591784-54591803 Msa0362840:intron 40.0%
ACCACTGGATAGAAATCAGA+CGG + chr3_1:54592428-54592447 None:intergenic 40.0%
AATCCAAATCCCTGAAACAC+AGG - chr3_1:54592502-54592521 Msa0362840:intron 40.0%
!!! CCCTCTTTTTTATTACCCTC+AGG + chr3_1:54592553-54592572 None:intergenic 40.0%
!! CCTCACTTTTCCATGGAAAT+TGG + chr3_1:54592645-54592664 None:intergenic 40.0%
CCAATTTCCATGGAAAAGTG+AGG - chr3_1:54592642-54592661 Msa0362840:intron 40.0%
!! TTCTACTCCTCACTTTTCCA+TGG + chr3_1:54592652-54592671 None:intergenic 40.0%
TTGCAGGAATCCTCTATCAA+GGG + chr3_1:54592848-54592867 None:intergenic 40.0%
!!! AGGACCCATTGTTTTTGCAT+TGG + chr3_1:54592897-54592916 None:intergenic 40.0%
!! TTCTTGGTTGGTAAAGGAAC+AGG + chr3_1:54592917-54592936 None:intergenic 40.0%
!! ATTCGCTTCTTGGTTGGTAA+AGG + chr3_1:54592923-54592942 None:intergenic 40.0%
TGTGTACGTGTGGAGATTTA+AGG + chr3_1:54592955-54592974 None:intergenic 40.0%
TAAATCTCCACACGTACACA+AGG - chr3_1:54592955-54592974 Msa0362840:intron 40.0%
! GATGAGTTCTGATCTCGAAA+TGG + chr3_1:54592991-54593010 None:intergenic 40.0%
GGGGTTGAATTTGCAGACAT+TGG - chr3_1:54591123-54591142 Msa0362840:CDS 45.0%
!! CATTGGCTTCAGCAATGTTC+CGG - chr3_1:54591299-54591318 Msa0362840:intron 45.0%
CATTGGGGATAATGCAGACA+TGG - chr3_1:54591442-54591461 Msa0362840:intron 45.0%
ATCACACTGGCACCATGATT+TGG + chr3_1:54591657-54591676 None:intergenic 45.0%
! AGTGTTGGATCGAGACTAGA+CGG - chr3_1:54592341-54592360 Msa0362840:intron 45.0%
ACCGTCTGATTTCTATCCAG+TGG - chr3_1:54592424-54592443 Msa0362840:intron 45.0%
CCACATAGTGTGATTGCACA+AGG + chr3_1:54592528-54592547 None:intergenic 45.0%
CCTTGTGCAATCACACTATG+TGG - chr3_1:54592525-54592544 Msa0362840:CDS 45.0%
ATCACACTATGTGGTTCCTG+AGG - chr3_1:54592534-54592553 Msa0362840:CDS 45.0%
TCACACTATGTGGTTCCTGA+GGG - chr3_1:54592535-54592554 Msa0362840:CDS 45.0%
TTACTTGGTCCCCTTGATAG+AGG - chr3_1:54592835-54592854 Msa0362840:intron 45.0%
TGCAGGAATCCTCTATCAAG+GGG + chr3_1:54592847-54592866 None:intergenic 45.0%
CTTGCAGGAATCCTCTATCA+AGG + chr3_1:54592849-54592868 None:intergenic 45.0%
CAGTGAATTCGCTTCTTGGT+TGG + chr3_1:54592929-54592948 None:intergenic 45.0%
GACACAGTGAATTCGCTTCT+TGG + chr3_1:54592933-54592952 None:intergenic 45.0%
GCAGACATTGGAAAGGGGAA+TGG - chr3_1:54591135-54591154 Msa0362840:CDS 50.0%
GAGACACTGGAAAGAGGGAA+TGG - chr3_1:54591209-54591228 Msa0362840:intron 50.0%
!! GTTTGGATTGGCGGTGAGTT+AGG + chr3_1:54591684-54591703 None:intergenic 50.0%
TTCCACACATTCACGCAGTC+TGG - chr3_1:54592308-54592327 Msa0362840:intron 50.0%
TCCACACATTCACGCAGTCT+GGG - chr3_1:54592309-54592328 Msa0362840:intron 50.0%
! ATTCACGCAGTCTGGGATGT+CGG - chr3_1:54592316-54592335 Msa0362840:intron 50.0%
TCATGGACGTAGGTAACCAC+TGG + chr3_1:54592443-54592462 None:intergenic 50.0%
AGTCATGGTCTCATGGACGT+AGG + chr3_1:54592453-54592472 None:intergenic 50.0%
TTCACGCAGTCATGGTCTCA+TGG + chr3_1:54592460-54592479 None:intergenic 50.0%
TTTGGATTTGACGCTGTCCG+CGG + chr3_1:54592490-54592509 None:intergenic 50.0%
AGGCCTGTGTTTCAGGGATT+TGG + chr3_1:54592508-54592527 None:intergenic 50.0%
TGCACAAGGCCTGTGTTTCA+GGG + chr3_1:54592514-54592533 None:intergenic 50.0%
TTGCACAAGGCCTGTGTTTC+AGG + chr3_1:54592515-54592534 None:intergenic 50.0%
GGATTCCTGCAAGCAGATAC+TGG - chr3_1:54592856-54592875 Msa0362840:intron 50.0%
TGCATCCAGTATCTGCTTGC+AGG + chr3_1:54592864-54592883 None:intergenic 50.0%
CACACGTACACAAGGATGCT+CGG - chr3_1:54592963-54592982 Msa0362840:intron 50.0%
ATGCAGCTTGATCTTCCTGC+TGG - chr3_1:54593061-54593080 Msa0362840:intron 50.0%
TCCCAGACTGCGTGAATGTG+TGG + chr3_1:54592313-54592332 None:intergenic 55.0%
! TCTGGGATGTCGGTGAGTGT+TGG - chr3_1:54592326-54592345 Msa0362840:intron 55.0%
GGTGCACATTCACGCAGTCA+TGG + chr3_1:54592468-54592487 None:intergenic 55.0%
TTGGATTTGACGCTGTCCGC+GGG + chr3_1:54592489-54592508 None:intergenic 55.0%
CGAGCATCCTTGTGTACGTG+TGG + chr3_1:54592965-54592984 None:intergenic 55.0%
ACTTCGACATCAACGCCAGC+AGG + chr3_1:54593079-54593098 None:intergenic 55.0%
ACTGCGTGAATGTGCACCCG+CGG - chr3_1:54592470-54592489 Msa0362840:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 54590552 54593435 54590552 ID=Msa0362840;Name=Msa0362840
chr3_1 mRNA 54590552 54593435 54590552 ID=Msa0362840-mRNA-1;Parent=Msa0362840;Name=Msa0362840-mRNA-1;_AED=0.01;_eAED=0.01;_QI=63|1|1|1|1|1|3|327|188
chr3_1 exon 54590552 54591190 54590552 ID=Msa0362840-mRNA-1:exon:9904;Parent=Msa0362840-mRNA-1
chr3_1 exon 54592524 54592583 54592524 ID=Msa0362840-mRNA-1:exon:9903;Parent=Msa0362840-mRNA-1
chr3_1 exon 54593178 54593435 54593178 ID=Msa0362840-mRNA-1:exon:9902;Parent=Msa0362840-mRNA-1
chr3_1 five_prime_UTR 54593373 54593435 54593373 ID=Msa0362840-mRNA-1:five_prime_utr;Parent=Msa0362840-mRNA-1
chr3_1 CDS 54593178 54593372 54593178 ID=Msa0362840-mRNA-1:cds;Parent=Msa0362840-mRNA-1
chr3_1 CDS 54592524 54592583 54592524 ID=Msa0362840-mRNA-1:cds;Parent=Msa0362840-mRNA-1
chr3_1 CDS 54590879 54591190 54590879 ID=Msa0362840-mRNA-1:cds;Parent=Msa0362840-mRNA-1
chr3_1 three_prime_UTR 54590552 54590878 54590552 ID=Msa0362840-mRNA-1:three_prime_utr;Parent=Msa0362840-mRNA-1
Gene Sequence

>Msa0362840

ATGGCAGTTTCATCTCTCTCAGCAACATTCATTCCTTCTCTTTCTGTCTCTTCCAATTCTTCACCATTGTTATCTTCAAAGCCAAAGCTTCAATCTTTGTGCTTTGTTTCTGGTAACACGTTGAGGATTACAAATGCGAAACCTCTTAAGTTATCAACTGTTGTTCATGCTGCTCCTGAAGCTTTGAATTCTGAGGTTGATGACTTGGAGACTCCAAGCACGTCAAAAATTAGCATTGGGGATAATGCAGACATGATGGCACCAAAGCAGAAAATCAGAATCAAGCTTAGATCTTACTTGGTCCCCTTGATAGAGGATTCCTGCAAGCAGATACTGGATGCAGCAAGAACTACCAATGCAAAAACAATGGGTCCTGTTCCTTTACCAACCAAGAAGCGAATTCACTGTGTCCTTAAATCTCCACACGTACACAAGGATGCTCGGTTCCATTTCGAGATCAGAACTCATCAGCGTGTCATTGATATTCTGTTTCCTACAGCACAAACAATAGATTCTCTTATGCAGCTTGATCTTCCTGCTGGCGTTGATGTCGAAGTCAAGCTCTAA

Protein sequence

>Msa0362840

MAVSSLSATFIPSLSVSSNSSPLLSSKPKLQSLCFVSGNTLRITNAKPLKLSTVVHAAPEALNSEVDDLETPSTSKISIGDNADMMAPKQKIRIKLRSYLVPLIEDSCKQILDAARTTNAKTMGPVPLPTKKRIHCVLKSPHVHKDARFHFEIRTHQRVIDILFPTAQTIDSLMQLDLPAGVDVEVKL*