AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0049990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0049990 MtrunA17_Chr3g0101881 94.681 188 10 0 1 188 1 188 7.14e-115 324
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0049990 AT3G13120.3 64.398 191 65 1 1 188 1 191 5.48e-75 224
Msa0049990 AT3G13120.2 64.398 191 65 1 1 188 1 191 5.48e-75 224
Msa0049990 AT3G13120.1 64.398 191 65 1 1 188 1 191 5.48e-75 224

Find 42 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCTTTGTGCTTTGTTTC+TGG 0.060318 1_2:-3523373 Msa0049990:CDS
ATAAATCCATGTGCATAATT+TGG 0.219282 1_2:+3520701 None:intergenic
GACACAGTGAATTCGCTTCT+TGG 0.315569 1_2:+3521148 None:intergenic
ACCTCAGAATTCAAAGCTTC+AGG 0.320276 1_2:+3523289 None:intergenic
TGCATCCAGTATCTGCTTGC+AGG 0.346889 1_2:+3521217 None:intergenic
GCTCTAAATATATTTGCTTC+AGG 0.347187 1_2:-3520976 Msa0049990:exon
TGTGTACGTGTGGAGATTTA+AGG 0.348074 1_2:+3521126 None:intergenic
AAGCACAAAGATTGAAGCTT+TGG 0.358455 1_2:+3523382 None:intergenic
AAACTAACAAAATGATCATT+TGG 0.362526 1_2:+3520842 None:intergenic
GGATTCCTGCAAGCAGATAC+TGG 0.366808 1_2:-3521222 Msa0049990:CDS
AGATAACAATGGTGAAGAAT+TGG 0.371117 1_2:+3523411 None:intergenic
ACAACAGTTGATAACTTAAG+AGG 0.390677 1_2:+3523322 None:intergenic
CTTCAGAGAGTTTGTTTCAA+TGG 0.392816 1_2:-3523482 Msa0049990:exon
TTCTCATTATGTTGTCATCT+AGG 0.397505 1_2:-3520820 Msa0049990:three_prime_UTR
TTCTTGGTTGGTAAAGGAAC+AGG 0.402200 1_2:+3521164 None:intergenic
AGACTTACATTACATTGAAT+AGG 0.410551 1_2:+3520753 None:intergenic
GAATCTATTGTTTGTGCTGT+AGG 0.413081 1_2:+3521044 None:intergenic
AACTTCAACTTCCTAGTAAT+AGG 0.416007 1_2:-3520928 Msa0049990:three_prime_UTR
GCAAATATCTATGTGACAAC+AGG 0.420997 1_2:+3520780 None:intergenic
TTACTTGGTCCCCTTGATAG+AGG 0.436195 1_2:-3521243 Msa0049990:CDS
AATCAAGCTTAGATCTTACT+TGG 0.443706 1_2:-3521258 Msa0049990:CDS
TCGACTCATTTCCTATTACT+AGG 0.459472 1_2:+3520917 None:intergenic
ATTCGCTTCTTGGTTGGTAA+AGG 0.474280 1_2:+3521158 None:intergenic
ATGCAGCTTGATCTTCCTGC+TGG 0.477604 1_2:-3521017 Msa0049990:CDS
GATGAGTTCTGATCTCGAAA+TGG 0.486839 1_2:+3521090 None:intergenic
CTTGCAGGAATCCTCTATCA+AGG 0.519406 1_2:+3521232 None:intergenic
CAGTGAATTCGCTTCTTGGT+TGG 0.546112 1_2:+3521152 None:intergenic
TTGTTTCTGGTAACACGTTG+AGG 0.552159 1_2:-3523360 Msa0049990:CDS
ACTTCGACATCAACGCCAGC+AGG 0.555474 1_2:+3521002 None:intergenic
CATTGGGGATAATGCAGACA+TGG 0.557328 1_2:-3522636 Msa0049990:intron
CACACGTACACAAGGATGCT+CGG 0.558591 1_2:-3521115 Msa0049990:CDS
AAAGAAATACATTCAGAGAG+TGG 0.565246 1_2:+3520872 None:intergenic
TTAAGACAGAAAATATGTTG+TGG 0.573239 1_2:+3520652 None:intergenic
TCCTGAAGCTTTGAATTCTG+AGG 0.574072 1_2:-3523290 Msa0049990:intron
ATTCTTCCAAATTATGCACA+TGG 0.574714 1_2:-3520707 Msa0049990:three_prime_UTR
TTGGAAGAGACAGAAAGAGA+AGG 0.576021 1_2:+3523430 None:intergenic
TTGCAGGAATCCTCTATCAA+GGG 0.586905 1_2:+3521233 None:intergenic
TTTGGCTTTGAAGATAACAA+TGG 0.593808 1_2:+3523400 None:intergenic
CGAGCATCCTTGTGTACGTG+TGG 0.612723 1_2:+3521116 None:intergenic
ATAGGAAATGAGTCGATACT+CGG 0.624257 1_2:-3520910 Msa0049990:three_prime_UTR
TAAATCTCCACACGTACACA+AGG 0.632451 1_2:-3521123 Msa0049990:CDS
TGCAGGAATCCTCTATCAAG+GGG 0.633408 1_2:+3521234 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTATGGAAATTATTTA+AGG - chr1_2:3521274-3521293 Msa0049990:CDS 10.0%
!! TTATTTAAGGAAATTATTTA+TGG - chr1_2:3521287-3521306 Msa0049990:intron 10.0%
!! TTATTTATGGAAATTATTTA+AGG - chr1_2:3521274-3521293 Msa0049990:CDS 10.0%
!! AAAAATATATCACATTAATT+CGG + chr1_2:3522031-3522050 None:intergenic 10.0%
!!! GAATATTGATTTTGTTTAAT+TGG - chr1_2:3520969-3520988 Msa0049990:three_prime_UTR 15.0%
!! AAAATATATCACATTAATTC+GGG + chr1_2:3522030-3522049 None:intergenic 15.0%
!! AACAGTGAAATAATAAAATA+AGG + chr1_2:3522204-3522223 None:intergenic 15.0%
!!! TATTTTATTATTTCACTGTT+TGG - chr1_2:3522204-3522223 Msa0049990:intron 15.0%
!! AAAAAAAATGCATTAAAATC+TGG + chr1_2:3522481-3522500 None:intergenic 15.0%
!!! ATTGATTTTGTTTAATTGGT+TGG - chr1_2:3520973-3520992 Msa0049990:exon 20.0%
!! TTGAGTATAAAATTCAATTC+TGG - chr1_2:3521065-3521084 Msa0049990:CDS 20.0%
!! AAATTACCTATGCTAAAAAT+TGG + chr1_2:3521102-3521121 None:intergenic 20.0%
!! TTGAACATATGAAAAACTAT+GGG - chr1_2:3521215-3521234 Msa0049990:CDS 20.0%
!! TTATTTGCAGTTTAATATGT+TGG - chr1_2:3521372-3521391 Msa0049990:intron 20.0%
!! TAAGTGTATATGAATTTCAT+TGG - chr1_2:3521395-3521414 Msa0049990:intron 20.0%
!!! ATGTTTTAACTCAATTTAGT+TGG - chr1_2:3521460-3521479 Msa0049990:intron 20.0%
!! ACATATTAAATGACTGAAAA+TGG + chr1_2:3521662-3521681 None:intergenic 20.0%
!! ACAGATAAGTTATAACTTAT+AGG + chr1_2:3522838-3522857 None:intergenic 20.0%
!! TATAAGTTATAACTTATCTG+TGG - chr1_2:3522837-3522856 Msa0049990:intron 20.0%
!! AAACTAACAAAATGATCATT+TGG + chr1_2:3523352-3523371 None:intergenic 20.0%
! CAATACAAACATGAAGAAAA+GGG + chr1_2:3520930-3520949 None:intergenic 25.0%
! ACAATACAAACATGAAGAAA+AGG + chr1_2:3520931-3520950 None:intergenic 25.0%
! GTTGAACATATGAAAAACTA+TGG - chr1_2:3521214-3521233 Msa0049990:CDS 25.0%
! TGAACATATGAAAAACTATG+GGG - chr1_2:3521216-3521235 Msa0049990:CDS 25.0%
! TAAAACATTCAGAAAAACGT+AGG + chr1_2:3521448-3521467 None:intergenic 25.0%
!!! GATTTGCTATTTTCAATAGT+TGG - chr1_2:3521588-3521607 Msa0049990:intron 25.0%
!! GGTTTATATTTGTTTGCTTT+TGG - chr1_2:3521609-3521628 Msa0049990:intron 25.0%
!!! TTATATTTGTTTGCTTTTGG+AGG - chr1_2:3521612-3521631 Msa0049990:intron 25.0%
! ATGTAATAGCAATGAAATCA+TGG - chr1_2:3521678-3521697 Msa0049990:intron 25.0%
! TGTAATAGCAATGAAATCAT+GGG - chr1_2:3521679-3521698 Msa0049990:intron 25.0%
! TTACAAATTGAGTGTATGTT+TGG + chr1_2:3521814-3521833 None:intergenic 25.0%
! TGTTTGATAAGTCAAGTAAT+AGG - chr1_2:3521838-3521857 Msa0049990:intron 25.0%
!! TTTTTGGATGAAAAAAGTGA+TGG + chr1_2:3522121-3522140 None:intergenic 25.0%
!! TTTTTCATCCAAAAAATCGA+AGG - chr1_2:3522126-3522145 Msa0049990:intron 25.0%
! AGCTTACATTGTTAATGAAA+AGG - chr1_2:3522153-3522172 Msa0049990:intron 25.0%
! AGAATGAAAACAGCTAAATA+GGG + chr1_2:3522297-3522316 None:intergenic 25.0%
! AAGAATGAAAACAGCTAAAT+AGG + chr1_2:3522298-3522317 None:intergenic 25.0%
!! GAGTTAACTGATGATTTTTA+TGG - chr1_2:3522792-3522811 Msa0049990:intron 25.0%
!! TTAACTGATGATTTTTATGG+AGG - chr1_2:3522795-3522814 Msa0049990:intron 25.0%
!!! TGTTTCTTCGAATTTTTAGA+TGG - chr1_2:3522891-3522910 Msa0049990:intron 25.0%
! AGACTTACATTACATTGAAT+AGG + chr1_2:3523441-3523460 None:intergenic 25.0%
! ATAAATCCATGTGCATAATT+TGG + chr1_2:3523493-3523512 None:intergenic 25.0%
AGATAACAATGGTGAAGAAT+TGG + chr1_2:3520783-3520802 None:intergenic 30.0%
!! TTTGGCTTTGAAGATAACAA+TGG + chr1_2:3520794-3520813 None:intergenic 30.0%
!! ACAACAGTTGATAACTTAAG+AGG + chr1_2:3520872-3520891 None:intergenic 30.0%
CTTCATGTTTGTATTGTGTT+TGG - chr1_2:3520934-3520953 Msa0049990:three_prime_UTR 30.0%
! TGGTTCTGTAGTAACAAAAA+TGG - chr1_2:3520993-3521012 Msa0049990:CDS 30.0%
!!! AAAGCTCCAATTTTTAGCAT+AGG - chr1_2:3521093-3521112 Msa0049990:CDS 30.0%
!! AAAGCATTGAGAAAATTCCT+AGG + chr1_2:3521167-3521186 None:intergenic 30.0%
! TAGGAATTTTCTCAATGCTT+TGG - chr1_2:3521166-3521185 Msa0049990:CDS 30.0%
GAACATATGAAAAACTATGG+GGG - chr1_2:3521217-3521236 Msa0049990:CDS 30.0%
AGGGGAATGGAAATTATTTA+TGG - chr1_2:3521261-3521280 Msa0049990:CDS 30.0%
GAAATTATTTAAGGAGACAC+TGG - chr1_2:3521309-3521328 Msa0049990:intron 30.0%
GAGGGAATGGAAATTATTTA+TGG - chr1_2:3521335-3521354 Msa0049990:intron 30.0%
TCTTTGTGATGAAAATGTCT+TGG - chr1_2:3521485-3521504 Msa0049990:intron 30.0%
!!! GAAAATGTCTTGGTGTTTTT+AGG - chr1_2:3521495-3521514 Msa0049990:intron 30.0%
AATTGAGTGTATGTTTGGAT+TGG + chr1_2:3521809-3521828 None:intergenic 30.0%
! AGCTTTTACCTTCGATTTTT+TGG + chr1_2:3522137-3522156 None:intergenic 30.0%
TGTTAATGAAAAGGAACTGA+AGG - chr1_2:3522162-3522181 Msa0049990:intron 30.0%
TGTAAATGAAAAAGCCGAAA+GGG + chr1_2:3522274-3522293 None:intergenic 30.0%
AATAAGGTGCATATAGAGTA+AGG + chr1_2:3522338-3522357 None:intergenic 30.0%
TACTCTATATGCACCTTATT+TGG - chr1_2:3522338-3522357 Msa0049990:intron 30.0%
! TATATGCACCTTATTTGGTT+TGG - chr1_2:3522343-3522362 Msa0049990:intron 30.0%
TGATAAAGCCAAACCAAATA+AGG + chr1_2:3522354-3522373 None:intergenic 30.0%
AATGTTTCAGAAGAATGGAT+GGG + chr1_2:3522382-3522401 None:intergenic 30.0%
AATCCAATGTTTCAGAAGAA+TGG + chr1_2:3522387-3522406 None:intergenic 30.0%
!! TTCTTCTGAAACATTGGATT+TGG - chr1_2:3522387-3522406 Msa0049990:intron 30.0%
GGTAATAAAAAAGAGGGAAA+AGG - chr1_2:3522669-3522688 Msa0049990:CDS 30.0%
! TTGATTCTGATTTTCTGCTT+TGG + chr1_2:3522919-3522938 None:intergenic 30.0%
AATCAAGCTTAGATCTTACT+TGG - chr1_2:3522933-3522952 Msa0049990:intron 30.0%
AACTACCAATGCAAAAACAA+TGG - chr1_2:3523002-3523021 Msa0049990:intron 30.0%
ACTACCAATGCAAAAACAAT+GGG - chr1_2:3523003-3523022 Msa0049990:intron 30.0%
! GCTCTAAATATATTTGCTTC+AGG - chr1_2:3523215-3523234 Msa0049990:intron 30.0%
AACTTCAACTTCCTAGTAAT+AGG - chr1_2:3523263-3523282 Msa0049990:intron 30.0%
AAAGAAATACATTCAGAGAG+TGG + chr1_2:3523322-3523341 None:intergenic 30.0%
TTCTCATTATGTTGTCATCT+AGG - chr1_2:3523371-3523390 Msa0049990:CDS 30.0%
ATTCTTCCAAATTATGCACA+TGG - chr1_2:3523484-3523503 Msa0049990:exon 30.0%
! CTTCAGAGAGTTTGTTTCAA+TGG - chr1_2:3520709-3520728 Msa0049990:three_prime_UTR 35.0%
AAGCACAAAGATTGAAGCTT+TGG + chr1_2:3520812-3520831 None:intergenic 35.0%
!! CAATCTTTGTGCTTTGTTTC+TGG - chr1_2:3520818-3520837 Msa0049990:three_prime_UTR 35.0%
GTTACATGTAATGAGTACCT+AGG - chr1_2:3521147-3521166 Msa0049990:CDS 35.0%
TGAATTTGCAGACATTGGAA+AGG - chr1_2:3521241-3521260 Msa0049990:CDS 35.0%
GAATTTGCAGACATTGGAAA+GGG - chr1_2:3521242-3521261 Msa0049990:CDS 35.0%
AATTTGCAGACATTGGAAAG+GGG - chr1_2:3521243-3521262 Msa0049990:CDS 35.0%
AAACGTAGGTCAATCTAAAC+CGG + chr1_2:3521434-3521453 None:intergenic 35.0%
!!! GTGTTTTTAGGTTGATGACT+TGG - chr1_2:3521507-3521526 Msa0049990:intron 35.0%
! ATGCTAATTTTTGACGTGCT+TGG + chr1_2:3521538-3521557 None:intergenic 35.0%
AGCACGTCAAAAATTAGCAT+TGG - chr1_2:3521538-3521557 Msa0049990:intron 35.0%
GCACGTCAAAAATTAGCATT+GGG - chr1_2:3521539-3521558 Msa0049990:intron 35.0%
CACGTCAAAAATTAGCATTG+GGG - chr1_2:3521540-3521559 Msa0049990:intron 35.0%
!! TTTTGGAGGCTTCTTATATG+TGG - chr1_2:3521626-3521645 Msa0049990:intron 35.0%
! TTAGTGCATCTTTGGATTAG+CGG - chr1_2:3521707-3521726 Msa0049990:intron 35.0%
! ATGATTTGGCAAAATTGCAG+TGG + chr1_2:3521756-3521775 None:intergenic 35.0%
! ACTGCAATTTTGCCAAATCA+TGG - chr1_2:3521755-3521774 Msa0049990:intron 35.0%
! CTATGCCATACTTTTGACAA+GGG + chr1_2:3521905-3521924 None:intergenic 35.0%
! ACTATGCCATACTTTTGACA+AGG + chr1_2:3521906-3521925 None:intergenic 35.0%
TATGGCATAGTTTCAGAACA+AGG - chr1_2:3521915-3521934 Msa0049990:intron 35.0%
GTTTCAGAACAAGGTTACAT+TGG - chr1_2:3521924-3521943 Msa0049990:intron 35.0%
AAGGGTAAGTGAAAGACTTT+GGG + chr1_2:3522256-3522275 None:intergenic 35.0%
AAAGGGTAAGTGAAAGACTT+TGG + chr1_2:3522257-3522276 None:intergenic 35.0%
AAGTCTTTCACTTACCCTTT+CGG - chr1_2:3522257-3522276 Msa0049990:intron 35.0%
GTGTAAATGAAAAAGCCGAA+AGG + chr1_2:3522275-3522294 None:intergenic 35.0%
!! TAGCTGTTTTCATTCTTCTG+AGG - chr1_2:3522301-3522320 Msa0049990:intron 35.0%
!! AGCTGTTTTCATTCTTCTGA+GGG - chr1_2:3522302-3522321 Msa0049990:intron 35.0%
CAATGTTTCAGAAGAATGGA+TGG + chr1_2:3522383-3522402 None:intergenic 35.0%
!! CATCCATTCTTCTGAAACAT+TGG - chr1_2:3522381-3522400 Msa0049990:intron 35.0%
TCCTGAGGGTAATAAAAAAG+AGG - chr1_2:3522662-3522681 Msa0049990:CDS 35.0%
CCTGAGGGTAATAAAAAAGA+GGG - chr1_2:3522663-3522682 Msa0049990:CDS 35.0%
TAGTCATCATCCAATTTCCA+TGG - chr1_2:3522745-3522764 Msa0049990:intron 35.0%
GAATCTATTGTTTGTGCTGT+AGG + chr1_2:3523150-3523169 None:intergenic 35.0%
TCGACTCATTTCCTATTACT+AGG + chr1_2:3523277-3523296 None:intergenic 35.0%
ATAGGAAATGAGTCGATACT+CGG - chr1_2:3523281-3523300 Msa0049990:intron 35.0%
GCAAATATCTATGTGACAAC+AGG + chr1_2:3523414-3523433 None:intergenic 35.0%
TTGGAAGAGACAGAAAGAGA+AGG + chr1_2:3520764-3520783 None:intergenic 40.0%
!! TTGTTTCTGGTAACACGTTG+AGG - chr1_2:3520831-3520850 Msa0049990:three_prime_UTR 40.0%
!! TCCTGAAGCTTTGAATTCTG+AGG - chr1_2:3520901-3520920 Msa0049990:three_prime_UTR 40.0%
ACCTCAGAATTCAAAGCTTC+AGG + chr1_2:3520905-3520924 None:intergenic 40.0%
TTTAAGGAGACACTGGAAAG+AGG - chr1_2:3521316-3521335 Msa0049990:intron 40.0%
TTAAGGAGACACTGGAAAGA+GGG - chr1_2:3521317-3521336 Msa0049990:intron 40.0%
!! GGGACATTTTAGTGCATCTT+TGG - chr1_2:3521699-3521718 Msa0049990:intron 40.0%
TGAGTTAGGCAAAATCACAC+TGG + chr1_2:3521783-3521802 None:intergenic 40.0%
! TGAGTGTATGTTTGGATTGG+CGG + chr1_2:3521806-3521825 None:intergenic 40.0%
ATGTTTCACTGCTGAGTAAC+TGG + chr1_2:3521877-3521896 None:intergenic 40.0%
ATGCTCCCTTGTCAAAAGTA+TGG - chr1_2:3521897-3521916 Msa0049990:intron 40.0%
ACCACTGGATAGAAATCAGA+CGG + chr1_2:3522541-3522560 None:intergenic 40.0%
AATCCAAATCCCTGAAACAC+AGG - chr1_2:3522615-3522634 Msa0049990:intron 40.0%
!!! CCCTCTTTTTTATTACCCTC+AGG + chr1_2:3522666-3522685 None:intergenic 40.0%
!! CCTCACTTTTCCATGGAAAT+TGG + chr1_2:3522758-3522777 None:intergenic 40.0%
CCAATTTCCATGGAAAAGTG+AGG - chr1_2:3522755-3522774 Msa0049990:intron 40.0%
!! TTCTACTCCTCACTTTTCCA+TGG + chr1_2:3522765-3522784 None:intergenic 40.0%
TTGCAGGAATCCTCTATCAA+GGG + chr1_2:3522961-3522980 None:intergenic 40.0%
!!! AGGACCCATTGTTTTTGCAT+TGG + chr1_2:3523010-3523029 None:intergenic 40.0%
!! TTCTTGGTTGGTAAAGGAAC+AGG + chr1_2:3523030-3523049 None:intergenic 40.0%
!! ATTCGCTTCTTGGTTGGTAA+AGG + chr1_2:3523036-3523055 None:intergenic 40.0%
TGTGTACGTGTGGAGATTTA+AGG + chr1_2:3523068-3523087 None:intergenic 40.0%
TAAATCTCCACACGTACACA+AGG - chr1_2:3523068-3523087 Msa0049990:intron 40.0%
! GATGAGTTCTGATCTCGAAA+TGG + chr1_2:3523104-3523123 None:intergenic 40.0%
GGGGTTGAATTTGCAGACAT+TGG - chr1_2:3521236-3521255 Msa0049990:CDS 45.0%
!! CATTGGCTTCAGCAATGTTC+CGG - chr1_2:3521412-3521431 Msa0049990:intron 45.0%
CATTGGGGATAATGCAGACA+TGG - chr1_2:3521555-3521574 Msa0049990:intron 45.0%
ATCACACTGGCACCATGATT+TGG + chr1_2:3521770-3521789 None:intergenic 45.0%
! AGTGTTGGATCGAGACTAGA+CGG - chr1_2:3522454-3522473 Msa0049990:intron 45.0%
ACCGTCTGATTTCTATCCAG+TGG - chr1_2:3522537-3522556 Msa0049990:intron 45.0%
CCACATAGTGTGATTGCACA+AGG + chr1_2:3522641-3522660 None:intergenic 45.0%
CCTTGTGCAATCACACTATG+TGG - chr1_2:3522638-3522657 Msa0049990:CDS 45.0%
ATCACACTATGTGGTTCCTG+AGG - chr1_2:3522647-3522666 Msa0049990:CDS 45.0%
TCACACTATGTGGTTCCTGA+GGG - chr1_2:3522648-3522667 Msa0049990:CDS 45.0%
TTACTTGGTCCCCTTGATAG+AGG - chr1_2:3522948-3522967 Msa0049990:intron 45.0%
TGCAGGAATCCTCTATCAAG+GGG + chr1_2:3522960-3522979 None:intergenic 45.0%
CTTGCAGGAATCCTCTATCA+AGG + chr1_2:3522962-3522981 None:intergenic 45.0%
CAGTGAATTCGCTTCTTGGT+TGG + chr1_2:3523042-3523061 None:intergenic 45.0%
GACACAGTGAATTCGCTTCT+TGG + chr1_2:3523046-3523065 None:intergenic 45.0%
GCAGACATTGGAAAGGGGAA+TGG - chr1_2:3521248-3521267 Msa0049990:CDS 50.0%
GAGACACTGGAAAGAGGGAA+TGG - chr1_2:3521322-3521341 Msa0049990:intron 50.0%
!! GTTTGGATTGGCGGTGAGTT+AGG + chr1_2:3521797-3521816 None:intergenic 50.0%
TTCCACACATTCACGCAGTC+TGG - chr1_2:3522421-3522440 Msa0049990:intron 50.0%
TCCACACATTCACGCAGTCT+GGG - chr1_2:3522422-3522441 Msa0049990:intron 50.0%
! ATTCACGCAGTCTGGGATGT+CGG - chr1_2:3522429-3522448 Msa0049990:intron 50.0%
TCATGGACGTAGGTAACCAC+TGG + chr1_2:3522556-3522575 None:intergenic 50.0%
AGTCATGGTCTCATGGACGT+AGG + chr1_2:3522566-3522585 None:intergenic 50.0%
TTCACGCAGTCATGGTCTCA+TGG + chr1_2:3522573-3522592 None:intergenic 50.0%
TTTGGATTTGACGCTGTCCG+CGG + chr1_2:3522603-3522622 None:intergenic 50.0%
AGGCCTGTGTTTCAGGGATT+TGG + chr1_2:3522621-3522640 None:intergenic 50.0%
TGCACAAGGCCTGTGTTTCA+GGG + chr1_2:3522627-3522646 None:intergenic 50.0%
TTGCACAAGGCCTGTGTTTC+AGG + chr1_2:3522628-3522647 None:intergenic 50.0%
GGATTCCTGCAAGCAGATAC+TGG - chr1_2:3522969-3522988 Msa0049990:intron 50.0%
TGCATCCAGTATCTGCTTGC+AGG + chr1_2:3522977-3522996 None:intergenic 50.0%
CACACGTACACAAGGATGCT+CGG - chr1_2:3523076-3523095 Msa0049990:intron 50.0%
ATGCAGCTTGATCTTCCTGC+TGG - chr1_2:3523174-3523193 Msa0049990:intron 50.0%
TCCCAGACTGCGTGAATGTG+TGG + chr1_2:3522426-3522445 None:intergenic 55.0%
! TCTGGGATGTCGGTGAGTGT+TGG - chr1_2:3522439-3522458 Msa0049990:intron 55.0%
GGTGCACATTCACGCAGTCA+TGG + chr1_2:3522581-3522600 None:intergenic 55.0%
TTGGATTTGACGCTGTCCGC+GGG + chr1_2:3522602-3522621 None:intergenic 55.0%
CGAGCATCCTTGTGTACGTG+TGG + chr1_2:3523078-3523097 None:intergenic 55.0%
ACTTCGACATCAACGCCAGC+AGG + chr1_2:3523192-3523211 None:intergenic 55.0%
ACTGCGTGAATGTGCACCCG+CGG - chr1_2:3522583-3522602 Msa0049990:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 3520665 3523548 3520665 ID=Msa0049990;Name=Msa0049990
chr1_2 mRNA 3520665 3523548 3520665 ID=Msa0049990-mRNA-1;Parent=Msa0049990;Name=Msa0049990-mRNA-1;_AED=0.01;_eAED=0.01;_QI=63|1|1|1|1|1|3|327|188
chr1_2 exon 3520665 3521303 3520665 ID=Msa0049990-mRNA-1:exon:883;Parent=Msa0049990-mRNA-1
chr1_2 exon 3522637 3522696 3522637 ID=Msa0049990-mRNA-1:exon:882;Parent=Msa0049990-mRNA-1
chr1_2 exon 3523291 3523548 3523291 ID=Msa0049990-mRNA-1:exon:881;Parent=Msa0049990-mRNA-1
chr1_2 five_prime_UTR 3523486 3523548 3523486 ID=Msa0049990-mRNA-1:five_prime_utr;Parent=Msa0049990-mRNA-1
chr1_2 CDS 3523291 3523485 3523291 ID=Msa0049990-mRNA-1:cds;Parent=Msa0049990-mRNA-1
chr1_2 CDS 3522637 3522696 3522637 ID=Msa0049990-mRNA-1:cds;Parent=Msa0049990-mRNA-1
chr1_2 CDS 3520992 3521303 3520992 ID=Msa0049990-mRNA-1:cds;Parent=Msa0049990-mRNA-1
chr1_2 three_prime_UTR 3520665 3520991 3520665 ID=Msa0049990-mRNA-1:three_prime_utr;Parent=Msa0049990-mRNA-1
Gene Sequence

>Msa0049990

ATGGCAGTTTCATCTCTCTCAGCAACATTCATTCCTTCTCTTTCTGTCTCTTCCAATTCTTCACCATTGTTATCTTCAAAGCCAAAGCTTCAATCTTTGTGCTTTGTTTCTGGTAACACGTTGAGGATTACAAATGCGAAACCTCTTAAGTTATCAACTGTTGTTCATGCTGCTCCTGAAGCTTTGAATTCTGAGGTTGATGACTTGGAGACTCCAAGCACGTCAAAAATTAGCATTGGGGATAATGCAGACATGATGGCACCAAAGCAGAAAATCAGAATCAAGCTTAGATCTTACTTGGTCCCCTTGATAGAGGATTCCTGCAAGCAGATACTGGATGCAGCAAGAACTACCAATGCAAAAACAATGGGTCCTGTTCCTTTACCAACCAAGAAGCGAATTCACTGTGTCCTTAAATCTCCACACGTACACAAGGATGCTCGGTTCCATTTCGAGATCAGAACTCATCAGCGTGTCATTGATATTCTGTTTCCTACAGCACAAACAATAGATTCTCTTATGCAGCTTGATCTTCCTGCTGGCGTTGATGTCGAAGTCAAGCTCTAA

Protein sequence

>Msa0049990

MAVSSLSATFIPSLSVSSNSSPLLSSKPKLQSLCFVSGNTLRITNAKPLKLSTVVHAAPEALNSEVDDLETPSTSKISIGDNADMMAPKQKIRIKLRSYLVPLIEDSCKQILDAARTTNAKTMGPVPLPTKKRIHCVLKSPHVHKDARFHFEIRTHQRVIDILFPTAQTIDSLMQLDLPAGVDVEVKL*