AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1374790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1374790 MtrunA17_Chr3g0136871 97.778 180 4 0 1 180 1 180 1.33e-128 358
Msa1374790 MtrunA17_Chr7g0256441 87.273 165 4 1 1 165 1 148 1.94e-99 283
Msa1374790 MtrunA17_Chr1g0150131 66.897 145 44 2 7 147 4 148 8.59e-67 202
Msa1374790 MtrunA17_Chr8g0360371 49.630 135 59 4 12 142 5 134 1.89e-37 130
Msa1374790 MtrunA17_Chr4g0041811 49.587 121 60 1 11 131 16 135 2.92e-36 125
Msa1374790 MtrunA17_Chr2g0317231 52.137 117 53 2 12 128 10 123 8.20e-35 129
Msa1374790 MtrunA17_Chr4g0039721 39.459 185 93 6 1 176 1 175 1.78e-34 119
Msa1374790 MtrunA17_Chr2g0331181 44.928 138 68 5 23 157 23 155 3.14e-34 119
Msa1374790 MtrunA17_Chr2g0324721 43.210 162 77 5 10 159 2 160 6.51e-34 119
Msa1374790 MtrunA17_Chr4g0062341 38.122 181 92 7 8 179 7 176 5.28e-33 116
Msa1374790 MtrunA17_Chr4g0062311 38.122 181 92 7 8 179 7 176 5.28e-33 116
Msa1374790 MtrunA17_Chr6g0458331 50.467 107 49 3 23 128 33 136 1.28e-30 109
Msa1374790 MtrunA17_Chr2g0319611 50.926 108 50 3 24 129 23 129 1.97e-30 111
Msa1374790 MtrunA17_Chr4g0040291 41.420 169 82 4 24 179 22 186 5.06e-30 108
Msa1374790 MtrunA17_Chr2g0324711 41.379 174 84 6 12 173 7 174 7.20e-29 109
Msa1374790 MtrunA17_Chr8g0385021 41.104 163 76 4 14 158 11 171 1.89e-27 104
Msa1374790 MtrunA17_Chr4g0073901 40.708 113 67 0 15 127 17 129 3.69e-27 101
Msa1374790 MtrunA17_Chr2g0323021 35.811 148 86 4 14 157 12 154 1.32e-24 95.5
Msa1374790 MtrunA17_Chr8g0385031 45.614 114 60 2 14 127 11 122 2.92e-24 96.3
Msa1374790 MtrunA17_Chr4g0073921 40.496 121 67 3 12 128 11 130 9.75e-24 94.4
Msa1374790 MtrunA17_Chr8g0385041 40.000 115 65 3 29 143 27 137 4.23e-21 88.2
Msa1374790 MtrunA17_Chr1g0188981 36.735 98 61 1 31 127 32 129 1.70e-20 84.0
Msa1374790 MtrunA17_Chr3g0127521 44.444 99 53 2 63 160 75 172 1.51e-19 83.6
Msa1374790 MtrunA17_Chr8g0335531 32.500 160 93 5 5 155 2 155 8.31e-19 79.7
Msa1374790 MtrunA17_Chr8g0335571 39.344 122 66 4 10 129 7 122 1.11e-18 79.3
Msa1374790 MtrunA17_Chr4g0064041 38.144 97 60 0 31 127 194 290 1.82e-18 81.3
Msa1374790 MtrunA17_Chr4g0064041 34.058 138 83 2 12 144 8 142 2.03e-17 78.6
Msa1374790 MtrunA17_Chr8g0387804 36.792 106 65 2 22 127 24 127 2.68e-18 76.6
Msa1374790 MtrunA17_Chr6g0481491 36.441 118 69 3 17 134 18 129 6.41e-17 75.1
Msa1374790 MtrunA17_Chr6g0453921 31.818 176 98 6 3 170 8 169 7.11e-17 74.3
Msa1374790 MtrunA17_Chr2g0306461 41.346 104 58 3 24 127 25 125 1.11e-16 74.3
Msa1374790 MtrunA17_Chr6g0459441 40.385 104 57 3 24 127 23 121 1.27e-16 73.6
Msa1374790 MtrunA17_Chr5g0394321 28.571 140 90 3 48 180 44 180 1.42e-16 73.6
Msa1374790 MtrunA17_Chr4g0033131 31.481 162 94 5 22 179 23 171 1.94e-16 72.8
Msa1374790 MtrunA17_Chr4g0033531 31.481 162 94 5 22 179 23 171 1.94e-16 72.8
Msa1374790 MtrunA17_Chr4g0064031 36.458 96 59 2 24 117 25 120 3.69e-16 72.0
Msa1374790 MtrunA17_Chr1g0205701 28.986 138 85 2 48 174 43 178 7.02e-16 71.6
Msa1374790 MtrunA17_Chr1g0196801 30.357 168 97 6 23 179 19 177 2.34e-15 70.1
Msa1374790 MtrunA17_Chr7g0253631 34.109 129 75 3 8 131 2 125 2.35e-15 71.6
Msa1374790 MtrunA17_Chr8g0379081 44.578 83 38 2 74 156 1 75 2.99e-15 68.6
Msa1374790 MtrunA17_Chr3g0132431 37.500 96 58 2 47 142 41 134 3.74e-14 67.0
Msa1374790 MtrunA17_Chr7g0253641 33.600 125 72 4 13 132 7 125 4.36e-14 67.8
Msa1374790 MtrunA17_Chr3g0132411 39.506 81 48 1 47 127 80 159 1.11e-13 65.5
Msa1374790 MtrunA17_Chr7g0253761 29.299 157 101 3 8 159 2 153 1.25e-13 65.5
Msa1374790 MtrunA17_Chr3g0132441 40.741 81 47 1 47 127 41 120 1.41e-13 65.9
Msa1374790 MtrunA17_Chr6g0483981 32.468 154 97 3 12 159 8 160 3.49e-13 66.6
Msa1374790 MtrunA17_Chr2g0289741 31.818 132 83 3 49 179 44 169 4.89e-13 63.9
Msa1374790 MtrunA17_Chr5g0440711 31.111 135 80 5 12 144 14 137 4.31e-12 60.8
Msa1374790 MtrunA17_Chr1g0185541 38.235 68 42 0 60 127 3 70 4.59e-12 58.9
Msa1374790 MtrunA17_Chr3g0132701 36.190 105 61 3 24 127 23 122 6.43e-12 61.6
Msa1374790 MtrunA17_Chr6g0453801 33.333 129 72 5 7 127 9 131 1.95e-11 59.7
Msa1374790 MtrunA17_Chr3g0132511 35.238 105 62 3 24 127 23 122 3.86e-11 59.7
Msa1374790 MtrunA17_Chr8g0380901 36.364 77 48 1 49 125 43 118 5.74e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1374790 AT2G25060.1 56.442 163 68 2 11 172 15 175 2.10e-61 188
Msa1374790 AT4G31840.1 54.386 171 69 4 8 172 2 169 7.53e-58 179
Msa1374790 AT5G25090.1 47.222 180 84 3 6 174 4 183 2.22e-51 163
Msa1374790 AT4G30590.1 55.556 126 51 1 12 132 8 133 3.53e-48 155
Msa1374790 AT5G57920.1 54.545 121 54 1 22 141 18 138 3.15e-46 150
Msa1374790 AT5G57920.3 54.545 121 54 1 22 141 50 170 3.53e-46 151
Msa1374790 AT5G57920.2 54.622 119 53 1 24 141 19 137 1.29e-45 148
Msa1374790 AT2G23990.1 48.077 156 68 3 1 155 1 144 4.51e-42 140
Msa1374790 AT2G23990.2 42.857 175 68 4 1 155 1 163 1.20e-37 129
Msa1374790 AT1G48940.1 40.116 172 97 4 11 180 10 177 4.15e-34 119
Msa1374790 AT3G18590.1 50.420 119 54 3 12 128 12 127 1.17e-33 118
Msa1374790 AT3G20570.1 34.884 172 83 3 12 156 15 184 2.47e-32 115
Msa1374790 AT4G27520.1 44.595 148 69 3 12 159 16 150 3.43e-31 115
Msa1374790 AT5G53870.2 44.079 152 68 5 11 155 7 148 3.59e-30 113
Msa1374790 AT5G53870.1 44.079 152 68 5 11 155 7 148 4.26e-30 113
Msa1374790 AT5G14345.1 46.429 112 57 2 36 146 24 133 3.11e-29 105
Msa1374790 AT4G28365.1 37.975 158 84 6 12 158 11 165 3.25e-27 102
Msa1374790 AT4G32490.1 39.416 137 75 4 3 134 2 135 9.69e-27 101
Msa1374790 AT1G79800.1 44.762 105 54 3 25 128 32 133 3.70e-26 99.4
Msa1374790 AT1G64640.1 33.571 140 89 2 4 140 6 144 1.23e-22 90.1
Msa1374790 AT2G31050.1 36.765 136 82 2 10 145 11 142 1.42e-21 87.4
Msa1374790 AT2G32300.1 35.417 144 83 4 18 160 17 151 2.85e-20 85.5
Msa1374790 AT2G32300.2 35.417 144 83 4 18 160 47 181 5.06e-20 85.1
Msa1374790 AT2G26720.1 32.353 136 88 2 10 145 11 142 5.49e-20 83.6
Msa1374790 AT5G07475.1 29.412 187 114 7 6 180 3 183 1.76e-18 79.3
Msa1374790 AT3G60270.1 37.374 99 57 2 31 129 29 122 5.55e-16 72.4
Msa1374790 AT5G26330.1 33.721 86 57 0 49 134 43 128 4.08e-15 70.1
Msa1374790 AT1G72230.1 37.755 98 51 2 39 127 21 117 5.90e-15 69.7
Msa1374790 AT3G17675.1 30.645 124 75 3 10 127 9 127 1.76e-14 67.0
Msa1374790 AT5G20230.1 31.034 116 74 2 31 141 28 142 1.59e-13 66.2
Msa1374790 AT1G45063.2 32.812 128 81 3 2 128 4 127 3.97e-13 66.2
Msa1374790 AT1G45063.2 34.694 98 61 2 31 127 152 247 9.65e-13 65.1
Msa1374790 AT1G45063.1 32.812 128 81 3 2 128 4 127 6.59e-13 66.2
Msa1374790 AT1G45063.1 34.694 98 61 2 31 127 152 247 1.57e-12 65.1
Msa1374790 AT2G27035.1 28.105 153 90 5 29 180 30 163 6.80e-13 63.5
Msa1374790 AT4G01380.1 34.545 110 68 4 35 142 79 186 8.06e-13 64.3
Msa1374790 AT3G27200.1 38.095 84 50 2 46 128 40 122 1.41e-12 63.2
Msa1374790 AT3G60280.1 37.374 99 57 3 31 129 27 120 1.43e-12 63.9
Msa1374790 AT2G44790.1 40.964 83 46 2 49 129 45 126 7.48e-12 61.6
Msa1374790 AT1G22480.1 39.024 82 49 1 54 135 41 121 6.21e-11 58.5

Find 62 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAATCACCGCACCTAATT+AGG 0.210319 tig0019570:+133435 Msa1374790:exon
AACTGGACTTGTGACTGTTC+TGG 0.274010 tig0019570:+133381 Msa1374790:CDS
TTGTTCTTGTTCCTTCTCTT+TGG 0.278533 tig0019570:+132837 Msa1374790:CDS
AACTTCACTATATCCTAATT+AGG 0.307719 tig0019570:-133448 None:intergenic
AATAATAACTTGCTTGATAT+AGG 0.319142 tig0019570:+133593 Msa1374790:three_prime_UTR
CCCATCATTGTAATGTTCAA+TGG 0.374125 tig0019570:-133158 None:intergenic
CCATCATTGTAATGTTCAAT+GGG 0.379061 tig0019570:-133157 None:intergenic
GGGACTGTTGGCTATTTATG+TGG 0.381502 tig0019570:+133402 Msa1374790:CDS
GCTCCACTGATGAAGTAAAA+TGG 0.384841 tig0019570:-133211 None:intergenic
ACTGGACTTGTGACTGTTCT+GGG 0.401738 tig0019570:+133382 Msa1374790:CDS
ATTGTATTATTATTTATAGA+TGG 0.403303 tig0019570:-132673 None:intergenic
CTCTGCAGCTAAGGAACTAT+TGG 0.408413 tig0019570:+132863 Msa1374790:CDS
CCCATTGAACATTACAATGA+TGG 0.412359 tig0019570:+133157 Msa1374790:CDS
TTTGCATTGATCTGGTTCCT+TGG 0.413913 tig0019570:-132699 None:intergenic
AGGGGTGGTTTGCATTGATC+TGG 0.415179 tig0019570:-132707 None:intergenic
TTCAAAGTCGGCGATCATCT+TGG 0.440071 tig0019570:+132963 Msa1374790:CDS
TGTCACTTTGCAAGCACAAA+GGG 0.448828 tig0019570:-132726 None:intergenic
AAGTTATTATTCATAAGCTT+TGG 0.459492 tig0019570:-133581 None:intergenic
TACTTCATCAGTGGAGCAAA+GGG 0.460490 tig0019570:+133217 Msa1374790:CDS
GGACCTTCTTCCAACTCTGC+TGG 0.465938 tig0019570:-133322 None:intergenic
AGTGCGCCGGTGTTGCGAAC+TGG 0.466338 tig0019570:+133364 Msa1374790:CDS
CTTTGGTTTCTCTGCAGCTA+AGG 0.473136 tig0019570:+132854 Msa1374790:CDS
CTGCTAGTTGGTGCAACAGC+TGG 0.474292 tig0019570:-133343 None:intergenic
GGACTGTTGGCTATTTATGT+GGG 0.487905 tig0019570:+133403 Msa1374790:CDS
AGTGAGTCTGCTTCAGATGA+TGG 0.493397 tig0019570:-132915 None:intergenic
TGCACCATCTCCAGCAGAGT+TGG 0.499713 tig0019570:+133312 Msa1374790:CDS
TCTTCCAACTCTGCTGGAGA+TGG 0.500018 tig0019570:-133316 None:intergenic
TGTGACTGTTCTGGGACTGT+TGG 0.507080 tig0019570:+133390 Msa1374790:CDS
AACTCTGCTGGAGATGGTGC+AGG 0.510903 tig0019570:-133310 None:intergenic
TTTGCAGTTTGGAAATATGA+TGG 0.513645 tig0019570:+133073 Msa1374790:intron
AGCAGACTCACTCAACCAAT+GGG 0.514967 tig0019570:+132926 Msa1374790:CDS
AACACCGGCGCACTGCTAGT+TGG 0.529681 tig0019570:-133355 None:intergenic
TCTCCAAAGAAAAGATCCAT+TGG 0.532263 tig0019570:+133280 Msa1374790:CDS
CCATTGAACATTACAATGAT+GGG 0.540182 tig0019570:+133158 Msa1374790:CDS
TTACTTCATCAGTGGAGCAA+AGG 0.544859 tig0019570:+133216 Msa1374790:CDS
AAGCAGACTCACTCAACCAA+TGG 0.548958 tig0019570:+132925 Msa1374790:CDS
TTCTTTCTGATAGCTGAATG+TGG 0.553596 tig0019570:-132769 None:intergenic
GCAAAGGGACACTGTGAGCA+AGG 0.567702 tig0019570:+133232 Msa1374790:CDS
AATAATAATACAATAATCCA+AGG 0.570368 tig0019570:+132682 Msa1374790:five_prime_UTR
CTGATGAAGTAAAATGGTCC+AGG 0.572076 tig0019570:-133205 None:intergenic
CAGTTTGGAAATATGATGGT+GGG 0.580211 tig0019570:+133077 Msa1374790:intron
TGCACCAACTAGCAGTGCGC+CGG 0.584450 tig0019570:+133351 Msa1374790:CDS
GAAAAGTCTCGTTTCAAAGT+CGG 0.587560 tig0019570:+132951 Msa1374790:CDS
TCTCCAGCAGAGTTGGAAGA+AGG 0.588093 tig0019570:+133319 Msa1374790:CDS
ACAAGTCCAGTTCGCAACAC+CGG 0.589779 tig0019570:-133370 None:intergenic
TTGTCACTTTGCAAGCACAA+AGG 0.591024 tig0019570:-132727 None:intergenic
TGGTGCAGGTGAAACTCCAA+TGG 0.600203 tig0019570:-133296 None:intergenic
GCAGTTTGGAAATATGATGG+TGG 0.604799 tig0019570:+133076 Msa1374790:intron
CACTATATCCTAATTAGGTG+CGG 0.608986 tig0019570:-133443 None:intergenic
AGGCAAGATAGATGCATGGA+AGG 0.615286 tig0019570:+132890 Msa1374790:CDS
CTGCAGAGAAACCAAAGAGA+AGG 0.616684 tig0019570:-132848 None:intergenic
AAGGTAAAGCTAGACAGACC+TGG 0.622619 tig0019570:+133187 Msa1374790:CDS
CATCATTGTAATGTTCAATG+GGG 0.626069 tig0019570:-133156 None:intergenic
GCAGCTAAGGAACTATTGGT+CGG 0.634929 tig0019570:+132867 Msa1374790:CDS
ACTTTGCAAGCACAAAGGGG+TGG 0.644733 tig0019570:-132722 None:intergenic
AGTTCTTGAGAACACAGCCA+TGG 0.674329 tig0019570:-132799 None:intergenic
TCGGAGGCAAGATAGATGCA+TGG 0.675253 tig0019570:+132886 Msa1374790:CDS
AGGACAAAAGCTGATTGTGG+TGG 0.679977 tig0019570:+133252 Msa1374790:CDS
GTCACTTTGCAAGCACAAAG+GGG 0.685393 tig0019570:-132725 None:intergenic
GCTAAGGAACTATTGGTCGG+AGG 0.690687 tig0019570:+132870 Msa1374790:CDS
GCAAGGACAAAAGCTGATTG+TGG 0.718198 tig0019570:+133249 Msa1374790:CDS
TTACAATGATGGGAACACGA+AGG 0.756088 tig0019570:+133168 Msa1374790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGTATTATTATTTATAGA+TGG - tig0019570:132676-132695 None:intergenic 10.0%
!! ATTGTATTATTATTTATAGA+TGG - tig0019570:132676-132695 None:intergenic 10.0%
!! AATAATAATACAATAATCCA+AGG + tig0019570:132682-132701 Msa1374790:five_prime_UTR 15.0%
!! TATGAAAAATAACTTGATAT+AGG + tig0019570:133655-133674 Msa1374790:three_prime_UTR 15.0%
!! AATAATAATACAATAATCCA+AGG + tig0019570:132682-132701 Msa1374790:five_prime_UTR 15.0%
!! TATGAAAAATAACTTGATAT+AGG + tig0019570:133655-133674 Msa1374790:three_prime_UTR 15.0%
!!! GATTCATTATTTTTTTCCAA+AGG + tig0019570:133501-133520 Msa1374790:three_prime_UTR 20.0%
!!! ATATCAAGTTTTTATTCCTT+TGG - tig0019570:133520-133539 None:intergenic 20.0%
!! AAGGAATAAAAACTTGATAT+AGG + tig0019570:133520-133539 Msa1374790:three_prime_UTR 20.0%
!!! AAAAAATAATGAAGGTATTC+AGG - tig0019570:133561-133580 None:intergenic 20.0%
!! AAGTTATTATTCATAAGCTT+TGG - tig0019570:133584-133603 None:intergenic 20.0%
!!! AATAATAACTTGCTTGATAT+AGG + tig0019570:133593-133612 Msa1374790:three_prime_UTR 20.0%
!!! AAGTTATTTTTCATAAGCTT+TGG - tig0019570:133650-133669 None:intergenic 20.0%
!!! GATTCATTATTTTTTTCCAA+AGG + tig0019570:133501-133520 Msa1374790:three_prime_UTR 20.0%
!!! ATATCAAGTTTTTATTCCTT+TGG - tig0019570:133520-133539 None:intergenic 20.0%
!! AAGGAATAAAAACTTGATAT+AGG + tig0019570:133520-133539 Msa1374790:three_prime_UTR 20.0%
!!! AAAAAATAATGAAGGTATTC+AGG - tig0019570:133561-133580 None:intergenic 20.0%
!! AAGTTATTATTCATAAGCTT+TGG - tig0019570:133584-133603 None:intergenic 20.0%
!!! AATAATAACTTGCTTGATAT+AGG + tig0019570:133593-133612 Msa1374790:three_prime_UTR 20.0%
!!! AAGTTATTTTTCATAAGCTT+TGG - tig0019570:133650-133669 None:intergenic 20.0%
! AACTTCACTATATCCTAATT+AGG - tig0019570:133451-133470 None:intergenic 25.0%
!!! AGCTTTGGAAAAAATAATGA+AGG - tig0019570:133569-133588 None:intergenic 25.0%
! AACTTCACTATATCCTAATT+AGG - tig0019570:133451-133470 None:intergenic 25.0%
!!! AGCTTTGGAAAAAATAATGA+AGG - tig0019570:133569-133588 None:intergenic 25.0%
!!! TTTACCTTTGTTTTGCAGTT+TGG + tig0019570:133062-133081 Msa1374790:intron 30.0%
ATTTCCAAACTGCAAAACAA+AGG - tig0019570:133069-133088 None:intergenic 30.0%
TTTGCAGTTTGGAAATATGA+TGG + tig0019570:133073-133092 Msa1374790:intron 30.0%
CATCATTGTAATGTTCAATG+GGG - tig0019570:133159-133178 None:intergenic 30.0%
CCATCATTGTAATGTTCAAT+GGG - tig0019570:133160-133179 None:intergenic 30.0%
CCATTGAACATTACAATGAT+GGG + tig0019570:133158-133177 Msa1374790:CDS 30.0%
!! AGCTTTGGAAAAAACAATGA+AGG - tig0019570:133635-133654 None:intergenic 30.0%
!!! TTTACCTTTGTTTTGCAGTT+TGG + tig0019570:133062-133081 Msa1374790:intron 30.0%
ATTTCCAAACTGCAAAACAA+AGG - tig0019570:133069-133088 None:intergenic 30.0%
TTTGCAGTTTGGAAATATGA+TGG + tig0019570:133073-133092 Msa1374790:intron 30.0%
CATCATTGTAATGTTCAATG+GGG - tig0019570:133159-133178 None:intergenic 30.0%
CCATCATTGTAATGTTCAAT+GGG - tig0019570:133160-133179 None:intergenic 30.0%
CCATTGAACATTACAATGAT+GGG + tig0019570:133158-133177 Msa1374790:CDS 30.0%
!! AGCTTTGGAAAAAACAATGA+AGG - tig0019570:133635-133654 None:intergenic 30.0%
TTCTTTCTGATAGCTGAATG+TGG - tig0019570:132772-132791 None:intergenic 35.0%
!! TCAGAAAGAAAAAAGCACCA+TGG + tig0019570:132782-132801 Msa1374790:exon 35.0%
TTGTTCTTGTTCCTTCTCTT+TGG + tig0019570:132837-132856 Msa1374790:CDS 35.0%
GAAAAGTCTCGTTTCAAAGT+CGG + tig0019570:132951-132970 Msa1374790:CDS 35.0%
AGAAAAAGATGTGTCAGTGA+TGG - tig0019570:133042-133061 None:intergenic 35.0%
CAGTTTGGAAATATGATGGT+GGG + tig0019570:133077-133096 Msa1374790:intron 35.0%
CCCATTGAACATTACAATGA+TGG + tig0019570:133157-133176 Msa1374790:CDS 35.0%
CCCATCATTGTAATGTTCAA+TGG - tig0019570:133161-133180 None:intergenic 35.0%
TCTCCAAAGAAAAGATCCAT+TGG + tig0019570:133280-133299 Msa1374790:CDS 35.0%
! ACTCCAATGGATCTTTTCTT+TGG - tig0019570:133286-133305 None:intergenic 35.0%
CACTATATCCTAATTAGGTG+CGG - tig0019570:133446-133465 None:intergenic 35.0%
TTCTTTCTGATAGCTGAATG+TGG - tig0019570:132772-132791 None:intergenic 35.0%
!! TCAGAAAGAAAAAAGCACCA+TGG + tig0019570:132782-132801 Msa1374790:exon 35.0%
TTGTTCTTGTTCCTTCTCTT+TGG + tig0019570:132837-132856 Msa1374790:CDS 35.0%
GAAAAGTCTCGTTTCAAAGT+CGG + tig0019570:132951-132970 Msa1374790:CDS 35.0%
AGAAAAAGATGTGTCAGTGA+TGG - tig0019570:133042-133061 None:intergenic 35.0%
CAGTTTGGAAATATGATGGT+GGG + tig0019570:133077-133096 Msa1374790:intron 35.0%
CCCATTGAACATTACAATGA+TGG + tig0019570:133157-133176 Msa1374790:CDS 35.0%
CCCATCATTGTAATGTTCAA+TGG - tig0019570:133161-133180 None:intergenic 35.0%
TCTCCAAAGAAAAGATCCAT+TGG + tig0019570:133280-133299 Msa1374790:CDS 35.0%
! ACTCCAATGGATCTTTTCTT+TGG - tig0019570:133286-133305 None:intergenic 35.0%
CACTATATCCTAATTAGGTG+CGG - tig0019570:133446-133465 None:intergenic 35.0%
! TTTGCATTGATCTGGTTCCT+TGG - tig0019570:132702-132721 None:intergenic 40.0%
!! TGTCACTTTGCAAGCACAAA+GGG - tig0019570:132729-132748 None:intergenic 40.0%
!! TTGTCACTTTGCAAGCACAA+AGG - tig0019570:132730-132749 None:intergenic 40.0%
GCAGTTTGGAAATATGATGG+TGG + tig0019570:133076-133095 Msa1374790:intron 40.0%
! TTACAATGATGGGAACACGA+AGG + tig0019570:133168-133187 Msa1374790:CDS 40.0%
CTGATGAAGTAAAATGGTCC+AGG - tig0019570:133208-133227 None:intergenic 40.0%
! GGACCATTTTACTTCATCAG+TGG + tig0019570:133208-133227 Msa1374790:CDS 40.0%
GCTCCACTGATGAAGTAAAA+TGG - tig0019570:133214-133233 None:intergenic 40.0%
TTACTTCATCAGTGGAGCAA+AGG + tig0019570:133216-133235 Msa1374790:CDS 40.0%
TACTTCATCAGTGGAGCAAA+GGG + tig0019570:133217-133236 Msa1374790:CDS 40.0%
! GGACTGTTGGCTATTTATGT+GGG + tig0019570:133403-133422 Msa1374790:CDS 40.0%
ATGAATCACCGCACCTAATT+AGG + tig0019570:133435-133454 Msa1374790:exon 40.0%
! TTTGCATTGATCTGGTTCCT+TGG - tig0019570:132702-132721 None:intergenic 40.0%
!! TGTCACTTTGCAAGCACAAA+GGG - tig0019570:132729-132748 None:intergenic 40.0%
!! TTGTCACTTTGCAAGCACAA+AGG - tig0019570:132730-132749 None:intergenic 40.0%
GCAGTTTGGAAATATGATGG+TGG + tig0019570:133076-133095 Msa1374790:intron 40.0%
! TTACAATGATGGGAACACGA+AGG + tig0019570:133168-133187 Msa1374790:CDS 40.0%
CTGATGAAGTAAAATGGTCC+AGG - tig0019570:133208-133227 None:intergenic 40.0%
! GGACCATTTTACTTCATCAG+TGG + tig0019570:133208-133227 Msa1374790:CDS 40.0%
GCTCCACTGATGAAGTAAAA+TGG - tig0019570:133214-133233 None:intergenic 40.0%
TTACTTCATCAGTGGAGCAA+AGG + tig0019570:133216-133235 Msa1374790:CDS 40.0%
TACTTCATCAGTGGAGCAAA+GGG + tig0019570:133217-133236 Msa1374790:CDS 40.0%
! GGACTGTTGGCTATTTATGT+GGG + tig0019570:133403-133422 Msa1374790:CDS 40.0%
ATGAATCACCGCACCTAATT+AGG + tig0019570:133435-133454 Msa1374790:exon 40.0%
! GTCACTTTGCAAGCACAAAG+GGG - tig0019570:132728-132747 None:intergenic 45.0%
AGTTCTTGAGAACACAGCCA+TGG - tig0019570:132802-132821 None:intergenic 45.0%
CTGCAGAGAAACCAAAGAGA+AGG - tig0019570:132851-132870 None:intergenic 45.0%
! CTTTGGTTTCTCTGCAGCTA+AGG + tig0019570:132854-132873 Msa1374790:CDS 45.0%
CTCTGCAGCTAAGGAACTAT+TGG + tig0019570:132863-132882 Msa1374790:CDS 45.0%
GCAGCTAAGGAACTATTGGT+CGG + tig0019570:132867-132886 Msa1374790:CDS 45.0%
AGGCAAGATAGATGCATGGA+AGG + tig0019570:132890-132909 Msa1374790:CDS 45.0%
AGTGAGTCTGCTTCAGATGA+TGG - tig0019570:132918-132937 None:intergenic 45.0%
AAGCAGACTCACTCAACCAA+TGG + tig0019570:132925-132944 Msa1374790:CDS 45.0%
AGCAGACTCACTCAACCAAT+GGG + tig0019570:132926-132945 Msa1374790:CDS 45.0%
! AACGAGACTTTTCTGCCCAT+TGG - tig0019570:132944-132963 None:intergenic 45.0%
TTCAAAGTCGGCGATCATCT+TGG + tig0019570:132963-132982 Msa1374790:CDS 45.0%
AAGGTAAAGCTAGACAGACC+TGG + tig0019570:133187-133206 Msa1374790:CDS 45.0%
GCAAGGACAAAAGCTGATTG+TGG + tig0019570:133249-133268 Msa1374790:CDS 45.0%
AGGACAAAAGCTGATTGTGG+TGG + tig0019570:133252-133271 Msa1374790:CDS 45.0%
AACTGGACTTGTGACTGTTC+TGG + tig0019570:133381-133400 Msa1374790:CDS 45.0%
ACTGGACTTGTGACTGTTCT+GGG + tig0019570:133382-133401 Msa1374790:CDS 45.0%
! GGGACTGTTGGCTATTTATG+TGG + tig0019570:133402-133421 Msa1374790:CDS 45.0%
! GTCACTTTGCAAGCACAAAG+GGG - tig0019570:132728-132747 None:intergenic 45.0%
AGTTCTTGAGAACACAGCCA+TGG - tig0019570:132802-132821 None:intergenic 45.0%
CTGCAGAGAAACCAAAGAGA+AGG - tig0019570:132851-132870 None:intergenic 45.0%
! CTTTGGTTTCTCTGCAGCTA+AGG + tig0019570:132854-132873 Msa1374790:CDS 45.0%
CTCTGCAGCTAAGGAACTAT+TGG + tig0019570:132863-132882 Msa1374790:CDS 45.0%
GCAGCTAAGGAACTATTGGT+CGG + tig0019570:132867-132886 Msa1374790:CDS 45.0%
AGGCAAGATAGATGCATGGA+AGG + tig0019570:132890-132909 Msa1374790:CDS 45.0%
AGTGAGTCTGCTTCAGATGA+TGG - tig0019570:132918-132937 None:intergenic 45.0%
AAGCAGACTCACTCAACCAA+TGG + tig0019570:132925-132944 Msa1374790:CDS 45.0%
AGCAGACTCACTCAACCAAT+GGG + tig0019570:132926-132945 Msa1374790:CDS 45.0%
! AACGAGACTTTTCTGCCCAT+TGG - tig0019570:132944-132963 None:intergenic 45.0%
TTCAAAGTCGGCGATCATCT+TGG + tig0019570:132963-132982 Msa1374790:CDS 45.0%
AAGGTAAAGCTAGACAGACC+TGG + tig0019570:133187-133206 Msa1374790:CDS 45.0%
GCAAGGACAAAAGCTGATTG+TGG + tig0019570:133249-133268 Msa1374790:CDS 45.0%
AGGACAAAAGCTGATTGTGG+TGG + tig0019570:133252-133271 Msa1374790:CDS 45.0%
AACTGGACTTGTGACTGTTC+TGG + tig0019570:133381-133400 Msa1374790:CDS 45.0%
ACTGGACTTGTGACTGTTCT+GGG + tig0019570:133382-133401 Msa1374790:CDS 45.0%
! GGGACTGTTGGCTATTTATG+TGG + tig0019570:133402-133421 Msa1374790:CDS 45.0%
! AGGGGTGGTTTGCATTGATC+TGG - tig0019570:132710-132729 None:intergenic 50.0%
ACTTTGCAAGCACAAAGGGG+TGG - tig0019570:132725-132744 None:intergenic 50.0%
GCTAAGGAACTATTGGTCGG+AGG + tig0019570:132870-132889 Msa1374790:CDS 50.0%
TCGGAGGCAAGATAGATGCA+TGG + tig0019570:132886-132905 Msa1374790:CDS 50.0%
TGGTGCAGGTGAAACTCCAA+TGG - tig0019570:133299-133318 None:intergenic 50.0%
TCTTCCAACTCTGCTGGAGA+TGG - tig0019570:133319-133338 None:intergenic 50.0%
TCTCCAGCAGAGTTGGAAGA+AGG + tig0019570:133319-133338 Msa1374790:CDS 50.0%
ACAAGTCCAGTTCGCAACAC+CGG - tig0019570:133373-133392 None:intergenic 50.0%
!! TGTGACTGTTCTGGGACTGT+TGG + tig0019570:133390-133409 Msa1374790:CDS 50.0%
! AGGGGTGGTTTGCATTGATC+TGG - tig0019570:132710-132729 None:intergenic 50.0%
ACTTTGCAAGCACAAAGGGG+TGG - tig0019570:132725-132744 None:intergenic 50.0%
GCTAAGGAACTATTGGTCGG+AGG + tig0019570:132870-132889 Msa1374790:CDS 50.0%
TCGGAGGCAAGATAGATGCA+TGG + tig0019570:132886-132905 Msa1374790:CDS 50.0%
TGGTGCAGGTGAAACTCCAA+TGG - tig0019570:133299-133318 None:intergenic 50.0%
TCTTCCAACTCTGCTGGAGA+TGG - tig0019570:133319-133338 None:intergenic 50.0%
TCTCCAGCAGAGTTGGAAGA+AGG + tig0019570:133319-133338 Msa1374790:CDS 50.0%
ACAAGTCCAGTTCGCAACAC+CGG - tig0019570:133373-133392 None:intergenic 50.0%
!! TGTGACTGTTCTGGGACTGT+TGG + tig0019570:133390-133409 Msa1374790:CDS 50.0%
GCAAAGGGACACTGTGAGCA+AGG + tig0019570:133232-133251 Msa1374790:CDS 55.0%
AACTCTGCTGGAGATGGTGC+AGG - tig0019570:133313-133332 None:intergenic 55.0%
TGCACCATCTCCAGCAGAGT+TGG + tig0019570:133312-133331 Msa1374790:CDS 55.0%
GGACCTTCTTCCAACTCTGC+TGG - tig0019570:133325-133344 None:intergenic 55.0%
! CTGCTAGTTGGTGCAACAGC+TGG - tig0019570:133346-133365 None:intergenic 55.0%
GCAAAGGGACACTGTGAGCA+AGG + tig0019570:133232-133251 Msa1374790:CDS 55.0%
AACTCTGCTGGAGATGGTGC+AGG - tig0019570:133313-133332 None:intergenic 55.0%
TGCACCATCTCCAGCAGAGT+TGG + tig0019570:133312-133331 Msa1374790:CDS 55.0%
GGACCTTCTTCCAACTCTGC+TGG - tig0019570:133325-133344 None:intergenic 55.0%
! CTGCTAGTTGGTGCAACAGC+TGG - tig0019570:133346-133365 None:intergenic 55.0%
TGCACCAACTAGCAGTGCGC+CGG + tig0019570:133351-133370 Msa1374790:CDS 60.0%
AACACCGGCGCACTGCTAGT+TGG - tig0019570:133358-133377 None:intergenic 60.0%
TGCACCAACTAGCAGTGCGC+CGG + tig0019570:133351-133370 Msa1374790:CDS 60.0%
AACACCGGCGCACTGCTAGT+TGG - tig0019570:133358-133377 None:intergenic 60.0%
!! AGTGCGCCGGTGTTGCGAAC+TGG + tig0019570:133364-133383 Msa1374790:CDS 65.0%
!! AGTGCGCCGGTGTTGCGAAC+TGG + tig0019570:133364-133383 Msa1374790:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0019570 gene 132666 133690 132666 ID=Msa1374790;Name=Msa1374790
tig0019570 mRNA 132666 133690 132666 ID=Msa1374790-mRNA-1;Parent=Msa1374790;Name=Msa1374790-mRNA-1;_AED=0.00;_eAED=0.00;_QI=135|1|1|1|1|1|2|252|180
tig0019570 exon 132666 132984 132666 ID=Msa1374790-mRNA-1:exon:4059;Parent=Msa1374790-mRNA-1
tig0019570 exon 133080 133690 133080 ID=Msa1374790-mRNA-1:exon:4060;Parent=Msa1374790-mRNA-1
tig0019570 five_prime_UTR 132666 132800 132666 ID=Msa1374790-mRNA-1:five_prime_utr;Parent=Msa1374790-mRNA-1
tig0019570 CDS 132801 132984 132801 ID=Msa1374790-mRNA-1:cds;Parent=Msa1374790-mRNA-1
tig0019570 CDS 133080 133438 133080 ID=Msa1374790-mRNA-1:cds;Parent=Msa1374790-mRNA-1
tig0019570 three_prime_UTR 133439 133690 133439 ID=Msa1374790-mRNA-1:three_prime_utr;Parent=Msa1374790-mRNA-1
Gene Sequence

>Msa1374790

ATGGCTGTGTTCTCAAGAACTGCTTCTGCTTCTCTATTGTTCTTGTTCCTTCTCTTTGGTTTCTCTGCAGCTAAGGAACTATTGGTCGGAGGCAAGATAGATGCATGGAAGGTTCCATCATCTGAAGCAGACTCACTCAACCAATGGGCAGAAAAGTCTCGTTTCAAAGTCGGCGATCATCTTGTTTGGAAATATGATGGTGGGAAAGACTCAGTTTTGCAAGTAAACAAAGAAGATTATGCTAATTGCAACAGCTCAAACCCCATTGAACATTACAATGATGGGAACACGAAGGTAAAGCTAGACAGACCTGGACCATTTTACTTCATCAGTGGAGCAAAGGGACACTGTGAGCAAGGACAAAAGCTGATTGTGGTGGTTATGTCTCCAAAGAAAAGATCCATTGGAGTTTCACCTGCACCATCTCCAGCAGAGTTGGAAGAAGGTCCAGCTGTTGCACCAACTAGCAGTGCGCCGGTGTTGCGAACTGGACTTGTGACTGTTCTGGGACTGTTGGCTATTTATGTGGGTTTTCTCATATGA

Protein sequence

>Msa1374790

MAVFSRTASASLLFLFLLFGFSAAKELLVGGKIDAWKVPSSEADSLNQWAEKSRFKVGDHLVWKYDGGKDSVLQVNKEDYANCNSSNPIEHYNDGNTKVKLDRPGPFYFISGAKGHCEQGQKLIVVVMSPKKRSIGVSPAPSPAELEEGPAVAPTSSAPVLRTGLVTVLGLLAIYVGFLI*