AlfalfaGEDB | Msa0090580

M. sativa cultivar zhongmu-4 / Msa0090580

KEGG: K02978
GO: GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF01667.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0090580	sp\|Q9M2F1\|RS272_ARATH	96.471	85	3	0	15	99	2	86	1.10e-57	175

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0090580	A0A151TEH8	96.552	87	3	0	13	99	1	87	3.50e-56	177

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0032780	Msa0090580	0.824403	8.227205e-54	-8.615850e-47
Msa0044010	Msa0090580	0.885202	9.965053e-72	-8.615850e-47
Msa0077320	Msa0090580	0.803828	2.893074e-49	-8.615850e-47
Msa0090580	Msa0183840	0.831933	1.260304e-55	-8.615850e-47
Msa0090580	Msa0229150	0.807415	5.111252e-50	-8.615850e-47
Msa0090580	Msa0281330	0.820670	6.068268e-53	-8.615850e-47
Msa0090580	Msa0281370	0.805331	1.405770e-49	-8.615850e-47
Msa0090580	Msa0376830	0.800711	1.267802e-48	-8.615850e-47
Msa0090580	Msa0725440	0.802428	5.637494e-49	-8.615850e-47
Msa0090580	Msa0781080	0.824981	6.012110e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0090580	MtrunA17_Chr2g0291901	100.000	85	0	15	99	2	86	8.33e-60	177
Msa0090580	MtrunA17_Chr1g0210581	100.000	85	0	15	99	2	86	8.33e-60	177
Msa0090580	MtrunA17_Chr2g0283551	98.824	85	1	15	99	2	86	1.90e-59	176

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0090580	AT3G61110.1	96.471	85	3	15	99	2	86	1.12e-58	175
Msa0090580	AT2G45710.1	95.181	83	4	15	97	2	84	1.05e-55	167
Msa0090580	AT5G47930.1	96.386	83	3	15	97	2	84	2.85e-55	166
Msa0090580	AT3G61111.1	83.529	85	14	15	99	2	86	1.35e-48	149
Msa0090580	AT3G61111.2	80.488	41	8	15	55	2	42	1.11e-17	71.2

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Find 43 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCACGACTGTTTGAGAG+TGG	0.670924	1_2:-72659836	None:intergenic
AAATTTAATTTAGTGCTAAC+GGG	0.427882	1_2:-72660136	None:intergenic
AATACCATGAAGAATGAGTT+AGG	0.426658	1_2:-72659045	None:intergenic
ACACATTAACACAAGACAAC+TGG	0.469557	1_2:-72660047	None:intergenic
ACCCAAAGTTGAGAGGGCTG+TGG	0.599911	1_2:+72658630	Msa0090580:CDS
ACGGTATTGTGCCAGCCAAC+CGG	0.474939	1_2:+72659873	Msa0090580:CDS
ACTAGTCATGCTAAATTAGA+GGG	0.602198	1_2:-72660259	None:intergenic
ACTAGTGTACTTGTTTGGTA+TGG	0.527204	1_2:+72660276	Msa0090580:three_prime_UTR
AGATGGGACCCAAAGTTGAG+AGG	0.608186	1_2:+72658623	None:intergenic
AGCCAACCGGCGGCAAAGCA+AGG	0.463038	1_2:+72659886	Msa0090580:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCTCATCAAGAGTTTCTA+GGG	+	chr1_2:72658810-72658829	Msa0090580:intron	30.0%
TAAAGAAACAAAAGAGAGAG+TGG	-	chr1_2:72658876-72658895	None:intergenic	30.0%
AATACCATGAAGAATGAGTT+AGG	-	chr1_2:72659048-72659067	None:intergenic	30.0%
TTATATAGATACTAGAGACC+CGG	+	chr1_2:72659249-72659268	Msa0090580:intron	30.0%
CAATGTCACAATGATTGTTA+TGG	+	chr1_2:72659498-72659517	Msa0090580:intron	30.0%
ACCAAAAATTCGACTTATAC+AGG	-	chr1_2:72659598-72659617	None:intergenic	30.0%
AAACCAACAAGTCAAATCAA+AGG	-	chr1_2:72659775-72659794	None:intergenic	30.0%
ACTAGTCATGCTAAATTAGA+GGG	-	chr1_2:72660262-72660281	None:intergenic	30.0%
AATCTCATCAAGAGTTTCTA+GGG	+	chr1_2:72658810-72658829	Msa0090580:intron	30.0%
TAAAGAAACAAAAGAGAGAG+TGG	-	chr1_2:72658876-72658895	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	72658625	72660326	72658625	ID=Msa0090580;Name=Msa0090580
chr1_2	mRNA	72658625	72660326	72658625	ID=Msa0090580-mRNA-1;Parent=Msa0090580;Name=Msa0090580-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0\|0.75\|0.8\|0.8\|0.75\|0.6\|5\|342\|99
chr1_2	exon	72658625	72658666	72658625	ID=Msa0090580-mRNA-1:exon:25226;Parent=Msa0090580-mRNA-1
chr1_2	exon	72658961	72659062	72658961	ID=Msa0090580-mRNA-1:exon:25227;Parent=Msa0090580-mRNA-1
chr1_2	exon	72659165	72659193	72659165	ID=Msa0090580-mRNA-1:exon:25228;Parent=Msa0090580-mRNA-1
chr1_2	exon	72659821	72660162	72659821	ID=Msa0090580-mRNA-1:exon:25229;Parent=Msa0090580-mRNA-1
chr1_2	exon	72660200	72660326	72660200	ID=Msa0090580-mRNA-1:exon:25230;Parent=Msa0090580-mRNA-1
chr1_2	CDS	72658625	72658666	72658625	ID=Msa0090580-mRNA-1:cds;Parent=Msa0090580-mRNA-1
chr1_2	CDS	72658961	72659062	72658961	ID=Msa0090580-mRNA-1:cds;Parent=Msa0090580-mRNA-1
chr1_2	CDS	72659165	72659193	72659165	ID=Msa0090580-mRNA-1:cds;Parent=Msa0090580-mRNA-1
chr1_2	CDS	72659821	72659947	72659821	ID=Msa0090580-mRNA-1:cds;Parent=Msa0090580-mRNA-1
chr1_2	three_prime_UTR	72659948	72660162	72659948	ID=Msa0090580-mRNA-1:three_prime_utr;Parent=Msa0090580-mRNA-1
chr1_2	three_prime_UTR	72660200	72660326	72660200	ID=Msa0090580-mRNA-1:three_prime_utr;Parent=Msa0090580-mRNA-1

Gene Sequence	>Msa0090580 ATGGGACCCAAAGTTGAGAGGGCTGTGGAATCAAATGTGGAGGTTCTCCAAAACGACATCGATCTCTTGAACCCACCAGCGGAGCTTGAGAAAAGGAAGCACAAGCTCAAGCGTCTCGTTCAATCTCCTAACTCATTCTTCATGGATGTCAAATGCCAAGGATGCTTCAACATAACTACTGTATTTAGCCACTCTCAAACAGTCGTGGTTTGCGGCAACTGTCAGACGGTATTGTGCCAGCCAACCGGCGGCAAAGCAAGGCTAACAGAGGGGTGCTCCTTCAGGAAGAAGGGTGATTAG
Protein sequence	>Msa0090580 MGPKVERAVESNVEVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD*