Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781080 | sp|Q84WM9|EF1B1_ARATH | 69.737 | 228 | 63 | 3 | 1 | 222 | 1 | 228 | 9.19e-99 | 289 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781080 | B7FMR1 | 97.758 | 223 | 4 | 1 | 1 | 222 | 1 | 223 | 2.28e-152 | 431 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0781080 | 0.807986 | 3.866550e-50 | -8.615850e-47 |
| Msa0002790 | Msa0781080 | 0.832636 | 8.443500e-56 | -8.615850e-47 |
| Msa0027590 | Msa0781080 | 0.815313 | 9.854479e-52 | -8.615850e-47 |
| Msa0032780 | Msa0781080 | 0.888563 | 5.282968e-73 | -8.615850e-47 |
| Msa0032810 | Msa0781080 | 0.855126 | 7.776076e-62 | -8.615850e-47 |
| Msa0038090 | Msa0781080 | 0.871784 | 5.250609e-67 | -8.615850e-47 |
| Msa0042480 | Msa0781080 | 0.805063 | 1.599844e-49 | -8.615850e-47 |
| Msa0044010 | Msa0781080 | 0.809479 | 1.853815e-50 | -8.615850e-47 |
| Msa0045730 | Msa0781080 | 0.870275 | 1.650707e-66 | -8.615850e-47 |
| Msa0075350 | Msa0781080 | 0.834692 | 2.586806e-56 | -8.615850e-47 |
| Msa0090580 | Msa0781080 | 0.824981 | 6.012110e-54 | -8.615850e-47 |
| Msa0114570 | Msa0781080 | 0.832739 | 7.959603e-56 | -8.615850e-47 |
| Msa0116130 | Msa0781080 | 0.856363 | 3.385065e-62 | -8.615850e-47 |
| Msa0116670 | Msa0781080 | 0.839446 | 1.577268e-57 | -8.615850e-47 |
| Msa0604960 | Msa0781080 | 0.851439 | 8.866229e-61 | -8.615850e-47 |
| Msa0615580 | Msa0781080 | 0.816212 | 6.211109e-52 | -8.615850e-47 |
| Msa0617540 | Msa0781080 | 0.829769 | 4.275946e-55 | -8.615850e-47 |
| Msa0622230 | Msa0781080 | 0.809162 | 2.168390e-50 | -8.615850e-47 |
| Msa0622750 | Msa0781080 | 0.861000 | 1.394798e-63 | -8.615850e-47 |
| Msa0623200 | Msa0781080 | 0.862858 | 3.762967e-64 | -8.615850e-47 |
| Msa0643820 | Msa0781080 | 0.819032 | 1.436624e-52 | -8.615850e-47 |
| Msa0656410 | Msa0781080 | 0.800264 | 1.563533e-48 | -8.615850e-47 |
| Msa0666230 | Msa0781080 | 0.802874 | 4.561483e-49 | -8.615850e-47 |
| Msa0683660 | Msa0781080 | 0.835967 | 1.232740e-56 | -8.615850e-47 |
| Msa0698780 | Msa0781080 | 0.804783 | 1.830294e-49 | -8.615850e-47 |
| Msa0705800 | Msa0781080 | 0.868763 | 5.125638e-66 | -8.615850e-47 |
| Msa0706500 | Msa0781080 | 0.808927 | 2.435387e-50 | -8.615850e-47 |
| Msa0712610 | Msa0781080 | 0.903514 | 3.205830e-79 | -8.615850e-47 |
| Msa0717380 | Msa0781080 | 0.827395 | 1.601852e-54 | -8.615850e-47 |
| Msa0729200 | Msa0781080 | 0.849351 | 3.418522e-60 | -8.615850e-47 |
| Msa0745970 | Msa0781080 | 0.844458 | 7.465423e-59 | -8.615850e-47 |
| Msa0752910 | Msa0781080 | 0.858893 | 6.025179e-63 | -8.615850e-47 |
| Msa0766080 | Msa0781080 | 0.869357 | 3.291089e-66 | -8.615850e-47 |
| Msa0769590 | Msa0781080 | 0.843800 | 1.121518e-58 | -8.615850e-47 |
| Msa0781080 | Msa0785130 | 0.846742 | 1.794396e-59 | -8.615850e-47 |
| Msa0781080 | Msa0788380 | 0.841555 | 4.425446e-58 | -8.615850e-47 |
| Msa0781080 | Msa0792420 | 0.840369 | 9.064720e-58 | -8.615850e-47 |
| Msa0781080 | Msa0799830 | 0.801156 | 1.028555e-48 | -8.615850e-47 |
| Msa0781080 | Msa0806880 | 0.834257 | 3.328182e-56 | -8.615850e-47 |
| Msa0781080 | Msa0817540 | 0.830192 | 3.371772e-55 | -8.615850e-47 |
| Msa0781080 | Msa0822580 | 0.859723 | 3.395457e-63 | -8.615850e-47 |
| Msa0781080 | Msa0827380 | 0.897789 | 1.000065e-76 | -8.615850e-47 |
| Msa0781080 | Msa0845550 | 0.824890 | 6.317074e-54 | -8.615850e-47 |
| Msa0781080 | Msa0861320 | 0.917868 | 3.138785e-86 | -8.615850e-47 |
| Msa0781080 | Msa0867060 | 0.819714 | 1.004725e-52 | -8.615850e-47 |
| Msa0781080 | Msa0876170 | 0.845865 | 3.110210e-59 | -8.615850e-47 |
| Msa0781080 | Msa0888810 | 0.839501 | 1.525840e-57 | -8.615850e-47 |
| Msa0781080 | Msa0915540 | 0.829366 | 5.358326e-55 | -8.615850e-47 |
| Msa0781080 | Msa0945480 | 0.858596 | 7.392313e-63 | -8.615850e-47 |
| Msa0781080 | Msa1010310 | 0.836365 | 9.766173e-57 | -8.615850e-47 |
| Msa0781080 | Msa1021120 | 0.820729 | 5.881143e-53 | -8.615850e-47 |
| Msa0781080 | Msa1037290 | 0.872688 | 2.624429e-67 | -8.615850e-47 |
| Msa0781080 | Msa1039520 | 0.812253 | 4.653378e-51 | -8.615850e-47 |
| Msa0781080 | Msa1040160 | 0.822590 | 2.183295e-53 | -8.615850e-47 |
| Msa0781080 | Msa1078870 | 0.831946 | 1.251310e-55 | -8.615850e-47 |
| Msa0781080 | Msa1078980 | 0.827565 | 1.458260e-54 | -8.615850e-47 |
| Msa0781080 | Msa1080350 | 0.884806 | 1.399347e-71 | -8.615850e-47 |
| Msa0781080 | Msa1082170 | 0.871988 | 4.492176e-67 | -8.615850e-47 |
| Msa0781080 | Msa1083370 | 0.803362 | 3.614271e-49 | -8.615850e-47 |
| Msa0781080 | Msa1089220 | 0.818677 | 1.729947e-52 | -8.615850e-47 |
| Msa0781080 | Msa1094380 | 0.840005 | 1.128181e-57 | -8.615850e-47 |
| Msa0781080 | Msa1096900 | 0.856759 | 2.588141e-62 | -8.615850e-47 |
| Msa0781080 | Msa1125860 | 0.881024 | 3.383181e-70 | -8.615850e-47 |
| Msa0781080 | Msa1126060 | 0.880344 | 5.930540e-70 | -8.615850e-47 |
| Msa0781080 | Msa1126520 | 0.893436 | 6.296774e-75 | -8.615850e-47 |
| Msa0781080 | Msa1164150 | 0.850841 | 1.307874e-60 | -8.615850e-47 |
| Msa0781080 | Msa1165640 | 0.815511 | 8.905287e-52 | -8.615850e-47 |
| Msa0781080 | Msa1166870 | 0.802443 | 5.597876e-49 | -8.615850e-47 |
| Msa0781080 | Msa1167540 | 0.825930 | 3.582270e-54 | -8.615850e-47 |
| Msa0781080 | Msa1169180 | 0.806296 | 8.814801e-50 | -8.615850e-47 |
| Msa0781080 | Msa1186030 | 0.817809 | 2.719180e-52 | -8.615850e-47 |
| Msa0781080 | Msa1193690 | 0.812445 | 4.223652e-51 | -8.615850e-47 |
| Msa0781080 | Msa1215820 | 0.811099 | 8.291492e-51 | -8.615850e-47 |
| Msa0781080 | Msa1218170 | 0.866821 | 2.153604e-65 | -8.615850e-47 |
| Msa0781080 | Msa1228490 | 0.810503 | 1.115791e-50 | -8.615850e-47 |
| Msa0781080 | Msa1256840 | 0.862393 | 5.231812e-64 | -8.615850e-47 |
| Msa0781080 | Msa1266060 | 0.820008 | 8.603468e-53 | -8.615850e-47 |
| Msa0781080 | Msa1273340 | 0.813144 | 2.969172e-51 | -8.615850e-47 |
| Msa0781080 | Msa1311400 | 0.871073 | 9.019607e-67 | -8.615850e-47 |
| Msa0781080 | Msa1316680 | 0.805498 | 1.296968e-49 | -8.615850e-47 |
| Msa0781080 | Msa1321790 | 0.813317 | 2.721170e-51 | -8.615850e-47 |
| Msa0781080 | Msa1332250 | 0.848379 | 6.363780e-60 | -8.615850e-47 |
| Msa0781080 | Msa1338190 | 0.828135 | 1.064013e-54 | -8.615850e-47 |
| Msa0781080 | Msa1340980 | 0.815801 | 7.675642e-52 | -8.615850e-47 |
| Msa0781080 | Msa1349570 | 0.832284 | 1.031810e-55 | -8.615850e-47 |
| Msa0781080 | Msa1356790 | 0.897252 | 1.683193e-76 | -8.615850e-47 |
| Msa0781080 | Msa1362790 | 0.882889 | 7.129150e-71 | -8.615850e-47 |
| Msa0781080 | Msa1364110 | 0.815506 | 8.928310e-52 | -8.615850e-47 |
| Msa0781080 | Msa1368920 | 0.870848 | 1.070219e-66 | -8.615850e-47 |
| Msa0781080 | Msa1369190 | 0.852655 | 4.003649e-61 | -8.615850e-47 |
| Msa0781080 | Msa1374240 | 0.867528 | 1.280858e-65 | -8.615850e-47 |
| Msa0781080 | Msa1392590 | 0.858469 | 8.067264e-63 | -8.615850e-47 |
| Msa0781080 | Msa1403910 | 0.823648 | 1.236741e-53 | -8.615850e-47 |
| Msa0781080 | Msa1406080 | 0.916459 | 1.736790e-85 | -8.615850e-47 |
| Msa0781080 | Msa1410440 | 0.820849 | 5.520150e-53 | -8.615850e-47 |
| Msa0781080 | Msa1413260 | 0.801919 | 7.174156e-49 | -8.615850e-47 |
| Msa0781080 | Msa1413500 | 0.826636 | 2.433672e-54 | -8.615850e-47 |
| Msa0781080 | Msa1418770 | 0.845584 | 3.706891e-59 | -8.615850e-47 |
| Msa0781080 | Msa1425670 | 0.818092 | 2.348010e-52 | -8.615850e-47 |
| Msa0781080 | Msa1426120 | 0.844300 | 8.235919e-59 | -8.615850e-47 |
| Msa0781080 | Msa1426370 | 0.832550 | 8.866746e-56 | -8.615850e-47 |
| Msa0781080 | Msa1426490 | 0.855258 | 7.117060e-62 | -8.615850e-47 |
| Msa0781080 | Msa1427560 | 0.811680 | 6.203296e-51 | -8.615850e-47 |
| Msa0781080 | Msa1455950 | 0.836614 | 8.439860e-57 | -8.615850e-47 |
| Msa0781080 | Msa1456050 | 0.823030 | 1.724879e-53 | -8.615850e-47 |
| Msa0781080 | Msa1462860 | 0.822919 | 1.830601e-53 | -8.615850e-47 |
| Msa0781080 | Msa1465260 | 0.801112 | 1.050130e-48 | -8.615850e-47 |
| Msa0133540 | Msa0781080 | 0.863319 | 2.710518e-64 | -8.615850e-47 |
| Msa0138890 | Msa0781080 | 0.887389 | 1.489076e-72 | -8.615850e-47 |
| Msa0172900 | Msa0781080 | 0.840297 | 9.464881e-58 | -8.615850e-47 |
| Msa0172930 | Msa0781080 | 0.845481 | 3.953654e-59 | -8.615850e-47 |
| Msa0173530 | Msa0781080 | 0.837152 | 6.151386e-57 | -8.615850e-47 |
| Msa0181490 | Msa0781080 | 0.869309 | 3.411127e-66 | -8.615850e-47 |
| Msa0192750 | Msa0781080 | 0.814244 | 1.700517e-51 | -8.615850e-47 |
| Msa0194940 | Msa0781080 | 0.817155 | 3.819232e-52 | -8.615850e-47 |
| Msa0210360 | Msa0781080 | 0.849307 | 3.516534e-60 | -8.615850e-47 |
| Msa0218830 | Msa0781080 | 0.838514 | 2.749244e-57 | -8.615850e-47 |
| Msa0219120 | Msa0781080 | 0.870291 | 1.630442e-66 | -8.615850e-47 |
| Msa0221030 | Msa0781080 | 0.800738 | 1.252145e-48 | -8.615850e-47 |
| Msa0222730 | Msa0781080 | 0.820331 | 7.258119e-53 | -8.615850e-47 |
| Msa0224560 | Msa0781080 | 0.821501 | 3.904655e-53 | -8.615850e-47 |
| Msa0229150 | Msa0781080 | 0.874091 | 8.854545e-68 | -8.615850e-47 |
| Msa0230490 | Msa0781080 | 0.886651 | 2.840068e-72 | -8.615850e-47 |
| Msa0230520 | Msa0781080 | 0.827349 | 1.642782e-54 | -8.615850e-47 |
| Msa0376830 | Msa0781080 | 0.818721 | 1.690549e-52 | -8.615850e-47 |
| Msa0423750 | Msa0781080 | 0.820772 | 5.749342e-53 | -8.615850e-47 |
| Msa0443390 | Msa0781080 | 0.844583 | 6.910415e-59 | -8.615850e-47 |
| Msa0481520 | Msa0781080 | 0.803031 | 4.232246e-49 | -8.615850e-47 |
| Msa0481850 | Msa0781080 | 0.884269 | 2.215992e-71 | -8.615850e-47 |
| Msa0258850 | Msa0781080 | 0.864450 | 1.205755e-64 | -8.615850e-47 |
| Msa0265250 | Msa0781080 | 0.814896 | 1.219537e-51 | -8.615850e-47 |
| Msa0289580 | Msa0781080 | 0.802413 | 5.678060e-49 | -8.615850e-47 |
| Msa0289610 | Msa0781080 | 0.805930 | 1.052173e-49 | -8.615850e-47 |
| Msa0296250 | Msa0781080 | 0.811013 | 8.654590e-51 | -8.615850e-47 |
| Msa0297830 | Msa0781080 | 0.846393 | 2.234422e-59 | -8.615850e-47 |
| Msa0298200 | Msa0781080 | 0.862368 | 5.325918e-64 | -8.615850e-47 |
| Msa0298870 | Msa0781080 | 0.803921 | 2.766917e-49 | -8.615850e-47 |
| Msa0301220 | Msa0781080 | 0.834391 | 3.078903e-56 | -8.615850e-47 |
| Msa0306690 | Msa0781080 | 0.874307 | 7.478367e-68 | -8.615850e-47 |
| Msa0317910 | Msa0781080 | 0.802321 | 5.929452e-49 | -8.615850e-47 |
| Msa0327300 | Msa0781080 | 0.815968 | 7.042806e-52 | -8.615850e-47 |
| Msa0332640 | Msa0781080 | 0.831271 | 1.835339e-55 | -8.615850e-47 |
| Msa0333910 | Msa0781080 | 0.814598 | 1.420125e-51 | -8.615850e-47 |
| Msa0334030 | Msa0781080 | 0.818167 | 2.257400e-52 | -8.615850e-47 |
| Msa0335840 | Msa0781080 | 0.851225 | 1.019170e-60 | -8.615850e-47 |
| Msa0337670 | Msa0781080 | 0.850767 | 1.372412e-60 | -8.615850e-47 |
| Msa0348830 | Msa0781080 | 0.886075 | 4.689628e-72 | -8.615850e-47 |
| Msa0483110 | Msa0781080 | 0.865485 | 5.707460e-65 | -8.615850e-47 |
| Msa0527150 | Msa0781080 | 0.803572 | 3.269319e-49 | -8.615850e-47 |
| Msa0534750 | Msa0781080 | 0.833485 | 5.191898e-56 | -8.615850e-47 |
| Msa0546030 | Msa0781080 | 0.814968 | 1.175634e-51 | -8.615850e-47 |
| Msa0584030 | Msa0781080 | 0.851602 | 7.975554e-61 | -8.615850e-47 |
| Msa0588630 | Msa0781080 | -0.809969 | 1.454580e-50 | -8.615850e-47 |
| Msa0590940 | Msa0781080 | 0.834931 | 2.253443e-56 | -8.615850e-47 |
| Msa0596370 | Msa0781080 | 0.824949 | 6.115887e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781080 | MtrunA17_Chr5g0441161 | 97.758 | 223 | 4 | 1 | 1 | 222 | 1 | 223 | 4.39e-156 | 431 |
| Msa0781080 | MtrunA17_Chr4g0008681 | 63.636 | 231 | 75 | 3 | 1 | 222 | 1 | 231 | 6.16e-76 | 229 |
| Msa0781080 | MtrunA17_Chr2g0305121 | 63.203 | 231 | 76 | 4 | 1 | 222 | 1 | 231 | 6.13e-74 | 224 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781080 | AT5G12110.1 | 69.737 | 228 | 63 | 3 | 1 | 222 | 1 | 228 | 9.34e-100 | 289 |
| Msa0781080 | AT5G19510.1 | 74.107 | 224 | 56 | 2 | 1 | 222 | 1 | 224 | 1.62e-90 | 266 |
| Msa0781080 | AT2G18110.1 | 58.079 | 229 | 84 | 4 | 5 | 222 | 4 | 231 | 1.78e-72 | 220 |
| Msa0781080 | AT1G30230.1 | 59.211 | 228 | 83 | 4 | 5 | 222 | 4 | 231 | 3.83e-69 | 211 |
| Msa0781080 | AT1G30230.2 | 59.211 | 228 | 83 | 4 | 5 | 222 | 4 | 231 | 8.90e-69 | 212 |
Find 98 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCACCATAACTGCTTTAT+TGG | 0.144642 | 5_2:+63405424 | None:intergenic |
| TAGCAAGGGCTCATAATTTA+AGG | 0.165402 | 5_2:+63405237 | None:intergenic |
| GAGTTGTGTGTGTATGATTT+AGG | 0.212090 | 5_2:-63408618 | Msa0781080:five_prime_UTR |
| AATCGTCATATTGGCGTTCT+TGG | 0.231833 | 5_2:-63405296 | Msa0781080:three_prime_UTR |
| TGAGAGTTGAGAGAGAATTT+TGG | 0.253583 | 5_2:+63408555 | None:intergenic |
| CTCTGGACATACTCGTTAAT+TGG | 0.274565 | 5_2:+63405825 | None:intergenic |
| GTCGTTTCTTCTTTCATGTT+TGG | 0.283824 | 5_2:-63405694 | Msa0781080:three_prime_UTR |
| AGTTGTGTGTGTATGATTTA+GGG | 0.293643 | 5_2:-63408617 | Msa0781080:five_prime_UTR |
| TCTAATCAGCCGCTTGAAAA+TGG | 0.306365 | 5_2:+63405757 | None:intergenic |
| TTAGCAGGTGCTCCTGCAGC+TGG | 0.312184 | 5_2:+63407759 | None:intergenic |
| TTACTCTCTTTCTTCTTTGC+GGG | 0.314961 | 5_2:+63406297 | None:intergenic |
| CTGAGAAGGTAACAGCCATT+AGG | 0.352405 | 5_2:+63408479 | None:intergenic |
| AGAGAGATGGAAATATTTAA+TGG | 0.353217 | 5_2:-63405629 | Msa0781080:three_prime_UTR |
| TGATAAATCAAACGGGGATA+TGG | 0.353507 | 5_2:+63405154 | None:intergenic |
| GTTGGAGTTCATGGTAATAA+TGG | 0.353706 | 5_2:-63405362 | Msa0781080:three_prime_UTR |
| CTGAGGCACAATCGTCATAT+TGG | 0.364569 | 5_2:-63405305 | Msa0781080:three_prime_UTR |
| TTGTGTATCGATTCAATAAA+CGG | 0.373231 | 5_2:+63405510 | None:intergenic |
| TGAGAAGGTAACAGCCATTA+GGG | 0.375051 | 5_2:+63408480 | None:intergenic |
| CCTTTGTGTCACCAAATGAT+TGG | 0.376164 | 5_2:-63405270 | Msa0781080:three_prime_UTR |
| GATGATGATCTTGACCTCTT+TGG | 0.382817 | 5_2:-63406375 | Msa0781080:CDS |
| ACATGCTCCCCAGGTTAAAC+CGG | 0.384492 | 5_2:+63406069 | None:intergenic |
| TCCCTCAATGATTTCCTCTC+TGG | 0.387083 | 5_2:-63408430 | Msa0781080:CDS |
| TTGAAATTCCCGGTTTAACC+TGG | 0.398982 | 5_2:-63406078 | Msa0781080:CDS |
| CTTACTCTCTTTCTTCTTTG+CGG | 0.404225 | 5_2:+63406296 | None:intergenic |
| AAACGACAGAGTGGAGGAGA+AGG | 0.405632 | 5_2:+63405710 | None:intergenic |
| AGCAAGGGCTCATAATTTAA+GGG | 0.409284 | 5_2:+63405238 | None:intergenic |
| GTTCGCAGCGTTGAAATTCC+CGG | 0.412225 | 5_2:-63406088 | Msa0781080:CDS |
| CGATTCATCGCAAACCCTAA+TGG | 0.420045 | 5_2:-63408494 | Msa0781080:exon |
| AAAATTTAAATAGAAGCATA+TGG | 0.427426 | 5_2:+63405550 | None:intergenic |
| CCATGCCAATAAAGCAGTTA+TGG | 0.428995 | 5_2:-63405429 | Msa0781080:three_prime_UTR |
| CAAAGTGTATGGATATGTTT+CGG | 0.431607 | 5_2:-63408028 | Msa0781080:CDS |
| CAATATGACGATTGTGCCTC+AGG | 0.437306 | 5_2:+63405306 | None:intergenic |
| GGAAAACCATGCCAATCATT+TGG | 0.439116 | 5_2:+63405259 | None:intergenic |
| AAGGATGATATCAAAGTGTA+TGG | 0.446962 | 5_2:-63408039 | Msa0781080:CDS |
| TATACTGCTGGAATCATTCA+AGG | 0.447457 | 5_2:-63405213 | Msa0781080:three_prime_UTR |
| TAAGAAGGCAGCAGAGGAAA+GGG | 0.453012 | 5_2:-63406334 | Msa0781080:CDS |
| CGAACACCATGCACATTTGT+GGG | 0.460914 | 5_2:-63405588 | Msa0781080:three_prime_UTR |
| AGATACAAGATCGTCAATAA+TGG | 0.472820 | 5_2:+63405884 | None:intergenic |
| ATTGGCATGGCATATGCAAA+AGG | 0.478361 | 5_2:+63405442 | None:intergenic |
| CATTAGGGTTTGCGATGAAT+CGG | 0.480889 | 5_2:+63408495 | None:intergenic |
| AGTGGAAGTGCTCCAGCTGC+AGG | 0.481359 | 5_2:-63407771 | Msa0781080:CDS |
| TCGAACACCATGCACATTTG+TGG | 0.488452 | 5_2:-63405589 | Msa0781080:three_prime_UTR |
| TGCATTTGTTACAGCCAAGC+TGG | 0.491896 | 5_2:-63405949 | Msa0781080:intron |
| AAGCTGGTTGCTGTTGGATA+CGG | 0.492710 | 5_2:-63405933 | Msa0781080:CDS |
| TCCAGAGAGGAAATCATTGA+GGG | 0.494384 | 5_2:+63408429 | None:intergenic |
| AGCCCTTGCTAGTATACTGC+TGG | 0.500730 | 5_2:-63405225 | Msa0781080:three_prime_UTR |
| TGAGACAGACATGAAGAAGC+TGG | 0.511507 | 5_2:-63406119 | Msa0781080:CDS |
| TGAAACAGAGGAGGATAAGA+AGG | 0.514826 | 5_2:-63406349 | Msa0781080:CDS |
| ATAAGAAGGCAGCAGAGGAA+AGG | 0.514986 | 5_2:-63406335 | Msa0781080:CDS |
| TCATCATCATCTTCAGCAGC+AGG | 0.517729 | 5_2:+63406390 | None:intergenic |
| GCTGATTAGACTGTTATTTG+CGG | 0.518900 | 5_2:-63405744 | Msa0781080:three_prime_UTR |
| CCATAACTGCTTTATTGGCA+TGG | 0.526932 | 5_2:+63405429 | None:intergenic |
| ATGCGACAATGTCACAGCTC+TGG | 0.527719 | 5_2:+63405808 | None:intergenic |
| ATGTCTGTCTCATCATCCCA+TGG | 0.532053 | 5_2:+63406130 | None:intergenic |
| ATTGTATGGAGTGAGAGAGA+TGG | 0.536485 | 5_2:-63405642 | Msa0781080:three_prime_UTR |
| TTCTGCTTGATGTTAAGCCA+TGG | 0.537433 | 5_2:-63406147 | Msa0781080:CDS |
| TCTCTTCACATCTTGCTGCA+AGG | 0.539260 | 5_2:-63407957 | Msa0781080:intron |
| TGAAATTCCCGGTTTAACCT+GGG | 0.541002 | 5_2:-63406077 | Msa0781080:CDS |
| TGGCTTAACATCAAGCAGAA+TGG | 0.546092 | 5_2:+63406150 | None:intergenic |
| AGACATGAAGAAGCTGGAAG+AGG | 0.547223 | 5_2:-63406113 | Msa0781080:CDS |
| TTCCAGAGAGGAAATCATTG+AGG | 0.548339 | 5_2:+63408428 | None:intergenic |
| TCATGTTTGGTGTGTTTCAG+TGG | 0.549318 | 5_2:-63405681 | Msa0781080:three_prime_UTR |
| GAGATACATACAGCTTTAGC+AGG | 0.553332 | 5_2:+63407744 | None:intergenic |
| CTGTGAGTCTTTCTTCAATG+AGG | 0.560347 | 5_2:+63405853 | None:intergenic |
| ATCGTACCAACCAGCAACAT+TGG | 0.561284 | 5_2:+63407984 | None:intergenic |
| AACGACAGAGTGGAGGAGAA+GGG | 0.565824 | 5_2:+63405711 | None:intergenic |
| CTCAGATCTTCACACAGAAG+AGG | 0.570425 | 5_2:-63408461 | Msa0781080:CDS |
| ACATTGGCAAAAGCATCACT+TGG | 0.572710 | 5_2:+63408000 | None:intergenic |
| GGAGGATAAGAAGGCAGCAG+AGG | 0.581848 | 5_2:-63406340 | Msa0781080:CDS |
| TCAGATCTTCACACAGAAGA+GGG | 0.583876 | 5_2:-63408460 | Msa0781080:CDS |
| GCTCAAGGTGTGAAATTCAG+TGG | 0.585505 | 5_2:-63407789 | Msa0781080:CDS |
| GTGTCACCAAATGATTGGCA+TGG | 0.587235 | 5_2:-63405265 | Msa0781080:three_prime_UTR |
| ATTCCAGCAGTATACTAGCA+AGG | 0.592946 | 5_2:+63405222 | None:intergenic |
| TCTGCTTGATGTTAAGCCAT+GGG | 0.593895 | 5_2:-63406146 | Msa0781080:CDS |
| CGGGGATATGGTGCTATCCA+CGG | 0.593943 | 5_2:+63405166 | None:intergenic |
| TGTTTGGTGTGTTTCAGTGG+TGG | 0.597058 | 5_2:-63405678 | Msa0781080:three_prime_UTR |
| CATGCTCCCCAGGTTAAACC+GGG | 0.597168 | 5_2:+63406070 | None:intergenic |
| TAGGGTTTGCGATGAATCGG+TGG | 0.599404 | 5_2:+63408498 | None:intergenic |
| ACAGCCAAGCTGGTTGCTGT+TGG | 0.600555 | 5_2:-63405939 | Msa0781080:intron |
| TTCTGTGTGAAGATCTGAGA+AGG | 0.604138 | 5_2:+63408465 | None:intergenic |
| GAAATTCCCGGTTTAACCTG+GGG | 0.605534 | 5_2:-63406076 | Msa0781080:CDS |
| AGTTTCCCTGGAAAAGCTCA+AGG | 0.612295 | 5_2:-63407804 | Msa0781080:CDS |
| CCAATCATTTGGTGACACAA+AGG | 0.613556 | 5_2:+63405270 | None:intergenic |
| TTCCAGCAGTATACTAGCAA+GGG | 0.614350 | 5_2:+63405223 | None:intergenic |
| CCTCTGTTTCATCACCAAAG+AGG | 0.617705 | 5_2:+63406361 | None:intergenic |
| GAAGGCAGCAGAGGAAAGGG+AGG | 0.617890 | 5_2:-63406331 | Msa0781080:CDS |
| GGTTTGCGATGAATCGGTGG+CGG | 0.621249 | 5_2:+63408501 | None:intergenic |
| GACAGAGTGGAGGAGAAGGG+AGG | 0.622905 | 5_2:+63405714 | None:intergenic |
| GTATCCAACAGCAACCAGCT+TGG | 0.624167 | 5_2:+63405935 | None:intergenic |
| ATGGTAATAATGGTTACATG+TGG | 0.633867 | 5_2:-63405352 | Msa0781080:three_prime_UTR |
| ATTCAGGGATCAATTGACAA+AGG | 0.634362 | 5_2:-63408058 | Msa0781080:intron |
| CCTCTTTGGTGATGAAACAG+AGG | 0.645851 | 5_2:-63406361 | Msa0781080:CDS |
| TGCCAATAAAGCAGTTATGG+TGG | 0.646400 | 5_2:-63405426 | Msa0781080:three_prime_UTR |
| GTAAAGTTGCGATCATGCCG+TGG | 0.658532 | 5_2:-63405183 | Msa0781080:three_prime_UTR |
| AAGAAGAAACGACAGAGTGG+AGG | 0.662799 | 5_2:+63405704 | None:intergenic |
| TGAAAGAAGAAACGACAGAG+TGG | 0.667900 | 5_2:+63405701 | None:intergenic |
| CTTTGGTGATGAAACAGAGG+AGG | 0.675786 | 5_2:-63406358 | Msa0781080:CDS |
| GCTAATCCCACAAATGTGCA+TGG | 0.688751 | 5_2:+63405582 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAAGATCAATAATTA+AGG | + | chr5_2:63405914-63405933 | None:intergenic | 10.0% |
| !! | TTTATATTGAAATATGAATT+TGG | - | chr5_2:63405926-63405945 | Msa0781080:CDS | 10.0% |
| !! | AATTTCAATAATAAAATTGT+TGG | + | chr5_2:63406905-63406924 | None:intergenic | 10.0% |
| !! | CGTGAAAAAAAAAATAATAT+TGG | - | chr5_2:63405177-63405196 | Msa0781080:three_prime_UTR | 15.0% |
| !!! | TTCTATTTTATTGTTTTGAA+TGG | - | chr5_2:63405693-63405712 | Msa0781080:three_prime_UTR | 15.0% |
| !!! | TCTATTTTATTGTTTTGAAT+GGG | - | chr5_2:63405694-63405713 | Msa0781080:three_prime_UTR | 15.0% |
| !!! | AAAATTTAAGTTTGAGTTTT+TGG | - | chr5_2:63408039-63408058 | Msa0781080:CDS | 15.0% |
| !!! | AAAATTTAAATAGAAGCATA+TGG | + | chr5_2:63408272-63408291 | None:intergenic | 15.0% |
| !!! | AAATATATTTTTTTCCAGAG+AGG | + | chr5_2:63405406-63405425 | None:intergenic | 20.0% |
| !! | TCTGGAAAAAAATATATTTC+TGG | - | chr5_2:63405407-63405426 | Msa0781080:three_prime_UTR | 20.0% |
| !! | CTGGAAAAAAATATATTTCT+GGG | - | chr5_2:63405408-63405427 | Msa0781080:three_prime_UTR | 20.0% |
| !! | TAAAAAAAGTAGAAATTGAG+AGG | + | chr5_2:63405446-63405465 | None:intergenic | 20.0% |
| !!! | TTTTTATTGTTTCTGAGATT+TGG | - | chr5_2:63405490-63405509 | Msa0781080:three_prime_UTR | 20.0% |
| !!! | TTTTATTGTTTCTGAGATTT+GGG | - | chr5_2:63405491-63405510 | Msa0781080:three_prime_UTR | 20.0% |
| !! | ATTCGAATCAATAAAATAGA+AGG | + | chr5_2:63405549-63405568 | None:intergenic | 20.0% |
| !!! | TTTTTTACTGTTTTGAGATT+TGG | - | chr5_2:63405585-63405604 | Msa0781080:three_prime_UTR | 20.0% |
| !!! | TTTTTACTGTTTTGAGATTT+GGG | - | chr5_2:63405586-63405605 | Msa0781080:three_prime_UTR | 20.0% |
| !!! | CTATTTTATTGTTTTGAATG+GGG | - | chr5_2:63405695-63405714 | Msa0781080:three_prime_UTR | 20.0% |
| !! | ACACGAAAAATTAAAATTGA+GGG | + | chr5_2:63406100-63406119 | None:intergenic | 20.0% |
| !! | AACACGAAAAATTAAAATTG+AGG | + | chr5_2:63406101-63406120 | None:intergenic | 20.0% |
| !!! | GTTATTGTCATTTGTAAATT+TGG | - | chr5_2:63406575-63406594 | Msa0781080:intron | 20.0% |
| !!! | GAGTCTTTGATTTTATTTAT+TGG | - | chr5_2:63406695-63406714 | Msa0781080:intron | 20.0% |
| !! | AAAATTACAAAATGTCTTCT+AGG | + | chr5_2:63406740-63406759 | None:intergenic | 20.0% |
| !!! | GAAATAAAAATAGAGTACTT+TGG | + | chr5_2:63406852-63406871 | None:intergenic | 20.0% |
| !! | AATCATTGCATGTTTATTAT+AGG | - | chr5_2:63407025-63407044 | Msa0781080:intron | 20.0% |
| !! | AAAAATTTATAACGACTAGA+AGG | + | chr5_2:63407553-63407572 | None:intergenic | 20.0% |
| !!! | TCATTAAGTGATATTTTTAC+AGG | - | chr5_2:63407635-63407654 | Msa0781080:intron | 20.0% |
| !!! | GGTTTTTCAAATTCTATGTT+GGG | - | chr5_2:63405512-63405531 | Msa0781080:three_prime_UTR | 25.0% |
| !! | TTGATTCGAATTGAAAAGAT+TGG | - | chr5_2:63405558-63405577 | Msa0781080:three_prime_UTR | 25.0% |
| !!! | TTTTTACTGTTTCTGAGATT+TGG | - | chr5_2:63405635-63405654 | Msa0781080:three_prime_UTR | 25.0% |
| !!! | TTTTACTGTTTCTGAGATTT+GGG | - | chr5_2:63405636-63405655 | Msa0781080:three_prime_UTR | 25.0% |
| !!! | TTTTTACTGTTTCTGAGATT+TGG | - | chr5_2:63405635-63405654 | Msa0781080:three_prime_UTR | 25.0% |
| !!! | TTTTACTGTTTCTGAGATTT+GGG | - | chr5_2:63405636-63405655 | Msa0781080:three_prime_UTR | 25.0% |
| !! | ATTTGGGTTATTGAAATTCA+GGG | - | chr5_2:63405746-63405765 | Msa0781080:three_prime_UTR | 25.0% |
| !!! | CATTTTTCAGTAATATACTG+TGG | - | chr5_2:63406206-63406225 | Msa0781080:intron | 25.0% |
| !! | CATCCAACATAATTTGAAAT+CGG | - | chr5_2:63406276-63406295 | Msa0781080:intron | 25.0% |
| ! | ATAAATAATCCACACGAAAA+AGG | - | chr5_2:63406781-63406800 | Msa0781080:intron | 25.0% |
| !!! | TGGTTTTTTAGAGTAGTATT+AGG | - | chr5_2:63406951-63406970 | Msa0781080:intron | 25.0% |
| !!! | GGTTTTTTAGAGTAGTATTA+GGG | - | chr5_2:63406952-63406971 | Msa0781080:intron | 25.0% |
| ! | CATGTTTATTATAGGCAATT+AGG | - | chr5_2:63407033-63407052 | Msa0781080:intron | 25.0% |
| ! | ATTCGAATGATCAAATTACT+TGG | + | chr5_2:63407392-63407411 | None:intergenic | 25.0% |
| ! | ATCATTCGAATTTATTTGTC+AGG | - | chr5_2:63407401-63407420 | Msa0781080:intron | 25.0% |
| !!! | TTAAGTGATATTTTTACAGG+TGG | - | chr5_2:63407638-63407657 | Msa0781080:intron | 25.0% |
| !!! | GTTTTGTTACAAGAATTGTA+TGG | - | chr5_2:63408163-63408182 | Msa0781080:intron | 25.0% |
| ! | AGAGAGATGGAAATATTTAA+TGG | - | chr5_2:63408190-63408209 | Msa0781080:intron | 25.0% |
| !!! | TTGTGTATCGATTCAATAAA+CGG | + | chr5_2:63408312-63408331 | None:intergenic | 25.0% |
| !! | TGATTTTCATAAATATCCTG+AGG | - | chr5_2:63408497-63408516 | Msa0781080:exon | 25.0% |
| AGTTGTGTGTGTATGATTTA+GGG | - | chr5_2:63405202-63405221 | Msa0781080:three_prime_UTR | 30.0% | |
| ! | GAATTTTGGGCTTCAATAAT+TGG | + | chr5_2:63405253-63405272 | None:intergenic | 30.0% |
| ! | TAGAAATTGAGAGGATTTTG+GGG | + | chr5_2:63405437-63405456 | None:intergenic | 30.0% |
| ! | GTAGAAATTGAGAGGATTTT+GGG | + | chr5_2:63405438-63405457 | None:intergenic | 30.0% |
| ! | AGTAGAAATTGAGAGGATTT+TGG | + | chr5_2:63405439-63405458 | None:intergenic | 30.0% |
| !! | GGGTTTTTCAAATTCTATGT+TGG | - | chr5_2:63405511-63405530 | Msa0781080:three_prime_UTR | 30.0% |
| ! | GATTTGGGTTATTGAAATTC+AGG | - | chr5_2:63405745-63405764 | Msa0781080:three_prime_UTR | 30.0% |
| AAGGATGATATCAAAGTGTA+TGG | - | chr5_2:63405780-63405799 | Msa0781080:exon | 30.0% | |
| CAAAGTGTATGGATATGTTT+CGG | - | chr5_2:63405791-63405810 | Msa0781080:exon | 30.0% | |
| ! | TTTTGTATGAATAGTTTCCC+TGG | - | chr5_2:63406003-63406022 | Msa0781080:intron | 30.0% |
| TGTATTTCTTAGAGTAACAC+TGG | - | chr5_2:63406180-63406199 | Msa0781080:intron | 30.0% | |
| GTATTTCTTAGAGTAACACT+GGG | - | chr5_2:63406181-63406200 | Msa0781080:intron | 30.0% | |
| !! | ATGCCGATTTCAAATTATGT+TGG | + | chr5_2:63406282-63406301 | None:intergenic | 30.0% |
| GAAAAGCTTACAGGTTTAAA+GGG | + | chr5_2:63406352-63406371 | None:intergenic | 30.0% | |
| TGAAAAGCTTACAGGTTTAA+AGG | + | chr5_2:63406353-63406372 | None:intergenic | 30.0% | |
| ACTTAAGATGAAAAGCTTAC+AGG | + | chr5_2:63406361-63406380 | None:intergenic | 30.0% | |
| !! | TTGTTTTTCACTTTTGAGCA+TGG | + | chr5_2:63406624-63406643 | None:intergenic | 30.0% |
| AGAATACAAAACACTAGAGT+TGG | + | chr5_2:63406659-63406678 | None:intergenic | 30.0% | |
| ACATGACATGACATACTATA+AGG | - | chr5_2:63407152-63407171 | Msa0781080:intron | 30.0% | |
| GCTAAGTTAGTAACTATGAA+AGG | - | chr5_2:63407242-63407261 | Msa0781080:intron | 30.0% | |
| CCTAAATTTCACAACAACTT+GGG | + | chr5_2:63407328-63407347 | None:intergenic | 30.0% | |
| ACCTAAATTTCACAACAACT+TGG | + | chr5_2:63407329-63407348 | None:intergenic | 30.0% | |
| !!! | AAGCATAGTTTTGAGAAAAG+TGG | - | chr5_2:63407592-63407611 | Msa0781080:intron | 30.0% |
| AGATACAAGATCGTCAATAA+TGG | + | chr5_2:63407938-63407957 | None:intergenic | 30.0% | |
| GAACTCCAACAACAAAAAAT+CGG | + | chr5_2:63408447-63408466 | None:intergenic | 30.0% | |
| !!! | TTTTTTGTTGTTGGAGTTCA+TGG | - | chr5_2:63408448-63408467 | Msa0781080:CDS | 30.0% |
| ATGGTAATAATGGTTACATG+TGG | - | chr5_2:63408467-63408486 | Msa0781080:CDS | 30.0% | |
| GAGTTGTGTGTGTATGATTT+AGG | - | chr5_2:63405201-63405220 | Msa0781080:three_prime_UTR | 35.0% | |
| ! | GAGAGTTGAGAGAGAATTTT+GGG | + | chr5_2:63405266-63405285 | None:intergenic | 35.0% |
| ! | TGAGAGTTGAGAGAGAATTT+TGG | + | chr5_2:63405267-63405286 | None:intergenic | 35.0% |
| !! | GGGTTTTTCAAATTCTATGC+TGG | - | chr5_2:63405606-63405625 | Msa0781080:three_prime_UTR | 35.0% |
| ATTCAGGGATCAATTGACAA+AGG | - | chr5_2:63405761-63405780 | Msa0781080:three_prime_UTR | 35.0% | |
| TTATGTCACGTAGAGTTGTA+TGG | - | chr5_2:63406144-63406163 | Msa0781080:CDS | 35.0% | |
| !! | AAGTATTGTCCTTTTTCGTG+TGG | + | chr5_2:63406793-63406812 | None:intergenic | 35.0% |
| GCAATGATTAAAAACATGCG+TGG | + | chr5_2:63407014-63407033 | None:intergenic | 35.0% | |
| GACATGACATACTATAAGGA+TGG | - | chr5_2:63407156-63407175 | Msa0781080:intron | 35.0% | |
| ACTTGGTAAACATCTCTATC+AGG | + | chr5_2:63407209-63407228 | None:intergenic | 35.0% | |
| TAGCTAACAACTATGTCACT+TGG | + | chr5_2:63407226-63407245 | None:intergenic | 35.0% | |
| CCCAAGTTGTTGTGAAATTT+AGG | - | chr5_2:63407325-63407344 | Msa0781080:intron | 35.0% | |
| AGTTGTATTGAAGTCACTGA+AGG | - | chr5_2:63407361-63407380 | Msa0781080:intron | 35.0% | |
| TTACTCTCTTTCTTCTTTGC+GGG | + | chr5_2:63407525-63407544 | None:intergenic | 35.0% | |
| CTTACTCTCTTTCTTCTTTG+CGG | + | chr5_2:63407526-63407545 | None:intergenic | 35.0% | |
| AGAAAAGTGGTCATTGAGTT+TGG | - | chr5_2:63407605-63407624 | Msa0781080:intron | 35.0% | |
| CAATTCCTATGTGACTGATT+TGG | - | chr5_2:63407842-63407861 | Msa0781080:intron | 35.0% | |
| !!! | AGTTTTTGGCCATTTTCAAG+CGG | - | chr5_2:63408053-63408072 | Msa0781080:CDS | 35.0% |
| ! | GCTGATTAGACTGTTATTTG+CGG | - | chr5_2:63408075-63408094 | Msa0781080:intron | 35.0% |
| GTCGTTTCTTCTTTCATGTT+TGG | - | chr5_2:63408125-63408144 | Msa0781080:intron | 35.0% | |
| GTTGGAGTTCATGGTAATAA+TGG | - | chr5_2:63408457-63408476 | Msa0781080:CDS | 35.0% | |
| AGCAAGGGCTCATAATTTAA+GGG | + | chr5_2:63408584-63408603 | None:intergenic | 35.0% | |
| TAGCAAGGGCTCATAATTTA+AGG | + | chr5_2:63408585-63408604 | None:intergenic | 35.0% | |
| TATACTGCTGGAATCATTCA+AGG | - | chr5_2:63408606-63408625 | Msa0781080:five_prime_UTR | 35.0% | |
| CATTAGGGTTTGCGATGAAT+CGG | + | chr5_2:63405327-63405346 | None:intergenic | 40.0% | |
| TGAGAAGGTAACAGCCATTA+GGG | + | chr5_2:63405342-63405361 | None:intergenic | 40.0% | |
| TTCTGTGTGAAGATCTGAGA+AGG | + | chr5_2:63405357-63405376 | None:intergenic | 40.0% | |
| TCAGATCTTCACACAGAAGA+GGG | - | chr5_2:63405359-63405378 | Msa0781080:three_prime_UTR | 40.0% | |
| TCCAGAGAGGAAATCATTGA+GGG | + | chr5_2:63405393-63405412 | None:intergenic | 40.0% | |
| TTCCAGAGAGGAAATCATTG+AGG | + | chr5_2:63405394-63405413 | None:intergenic | 40.0% | |
| !! | ACATTGGCAAAAGCATCACT+TGG | + | chr5_2:63405822-63405841 | None:intergenic | 40.0% |
| ! | GAGATACATACAGCTTTAGC+AGG | + | chr5_2:63406078-63406097 | None:intergenic | 40.0% |
| TTTCAGCCAAGATAGCAACA+TGG | - | chr5_2:63406927-63406946 | Msa0781080:intron | 40.0% | |
| AACCATCCATGTTGCTATCT+TGG | + | chr5_2:63406936-63406955 | None:intergenic | 40.0% | |
| AGAAAGGAGATCTACAGTAC+TGG | + | chr5_2:63406982-63407001 | None:intergenic | 40.0% | |
| TGCGTGGATCTCATTAAGAA+AGG | + | chr5_2:63406998-63407017 | None:intergenic | 40.0% | |
| CTATCAGGTTCAACTAACAC+AGG | + | chr5_2:63407194-63407213 | None:intergenic | 40.0% | |
| GATGATGATCTTGACCTCTT+TGG | - | chr5_2:63407444-63407463 | Msa0781080:intron | 40.0% | |
| TGAAACAGAGGAGGATAAGA+AGG | - | chr5_2:63407470-63407489 | Msa0781080:intron | 40.0% | |
| TGGCTTAACATCAAGCAGAA+TGG | + | chr5_2:63407672-63407691 | None:intergenic | 40.0% | |
| TTCTGCTTGATGTTAAGCCA+TGG | - | chr5_2:63407672-63407691 | Msa0781080:intron | 40.0% | |
| TCTGCTTGATGTTAAGCCAT+GGG | - | chr5_2:63407673-63407692 | Msa0781080:intron | 40.0% | |
| TTGAAATTCCCGGTTTAACC+TGG | - | chr5_2:63407741-63407760 | Msa0781080:intron | 40.0% | |
| TGAAATTCCCGGTTTAACCT+GGG | - | chr5_2:63407742-63407761 | Msa0781080:intron | 40.0% | |
| ! | TTTTAACATACATGCTCCCC+AGG | + | chr5_2:63407762-63407781 | None:intergenic | 40.0% |
| ACAAGCCAAATCAGTCACAT+AGG | + | chr5_2:63407850-63407869 | None:intergenic | 40.0% | |
| CTGTGAGTCTTTCTTCAATG+AGG | + | chr5_2:63407969-63407988 | None:intergenic | 40.0% | |
| CTCTGGACATACTCGTTAAT+TGG | + | chr5_2:63407997-63408016 | None:intergenic | 40.0% | |
| TCTAATCAGCCGCTTGAAAA+TGG | + | chr5_2:63408065-63408084 | None:intergenic | 40.0% | |
| TGAAAGAAGAAACGACAGAG+TGG | + | chr5_2:63408121-63408140 | None:intergenic | 40.0% | |
| !! | TCATGTTTGGTGTGTTTCAG+TGG | - | chr5_2:63408138-63408157 | Msa0781080:intron | 40.0% |
| ATTGTATGGAGTGAGAGAGA+TGG | - | chr5_2:63408177-63408196 | Msa0781080:intron | 40.0% | |
| ATTGGCATGGCATATGCAAA+AGG | + | chr5_2:63408380-63408399 | None:intergenic | 40.0% | |
| ! | CCATAACTGCTTTATTGGCA+TGG | + | chr5_2:63408393-63408412 | None:intergenic | 40.0% |
| CCATGCCAATAAAGCAGTTA+TGG | - | chr5_2:63408390-63408409 | Msa0781080:intron | 40.0% | |
| TGCCAATAAAGCAGTTATGG+TGG | - | chr5_2:63408393-63408412 | Msa0781080:intron | 40.0% | |
| GACCACCATAACTGCTTTAT+TGG | + | chr5_2:63408398-63408417 | None:intergenic | 40.0% | |
| ACAACAAAAAATCGGTGGTG+TGG | + | chr5_2:63408439-63408458 | None:intergenic | 40.0% | |
| !!! | CACCACCGATTTTTTGTTGT+TGG | - | chr5_2:63408439-63408458 | Msa0781080:CDS | 40.0% |
| CTCCAACAACAAAAAATCGG+TGG | + | chr5_2:63408444-63408463 | None:intergenic | 40.0% | |
| AATCGTCATATTGGCGTTCT+TGG | - | chr5_2:63408523-63408542 | Msa0781080:five_prime_UTR | 40.0% | |
| ! | CCAATCATTTGGTGACACAA+AGG | + | chr5_2:63408552-63408571 | None:intergenic | 40.0% |
| CCTTTGTGTCACCAAATGAT+TGG | - | chr5_2:63408549-63408568 | Msa0781080:five_prime_UTR | 40.0% | |
| GGAAAACCATGCCAATCATT+TGG | + | chr5_2:63408563-63408582 | None:intergenic | 40.0% | |
| TTCCAGCAGTATACTAGCAA+GGG | + | chr5_2:63408599-63408618 | None:intergenic | 40.0% | |
| ATTCCAGCAGTATACTAGCA+AGG | + | chr5_2:63408600-63408619 | None:intergenic | 40.0% | |
| CGATTCATCGCAAACCCTAA+TGG | - | chr5_2:63405325-63405344 | Msa0781080:three_prime_UTR | 45.0% | |
| CTGAGAAGGTAACAGCCATT+AGG | + | chr5_2:63405343-63405362 | None:intergenic | 45.0% | |
| CTCAGATCTTCACACAGAAG+AGG | - | chr5_2:63405358-63405377 | Msa0781080:three_prime_UTR | 45.0% | |
| TCCCTCAATGATTTCCTCTC+TGG | - | chr5_2:63405389-63405408 | Msa0781080:three_prime_UTR | 45.0% | |
| ! | GATGCTTTTGCCAATGTTGC+TGG | - | chr5_2:63405825-63405844 | Msa0781080:CDS | 45.0% |
| ! | CTTTTGCCAATGTTGCTGGT+TGG | - | chr5_2:63405829-63405848 | Msa0781080:CDS | 45.0% |
| ATCGTACCAACCAGCAACAT+TGG | + | chr5_2:63405838-63405857 | None:intergenic | 45.0% | |
| TCTCTTCACATCTTGCTGCA+AGG | - | chr5_2:63405862-63405881 | Msa0781080:CDS | 45.0% | |
| AGTTTCCCTGGAAAAGCTCA+AGG | - | chr5_2:63406015-63406034 | Msa0781080:intron | 45.0% | |
| ! | TCACACCTTGAGCTTTTCCA+GGG | + | chr5_2:63406023-63406042 | None:intergenic | 45.0% |
| ! | TTCACACCTTGAGCTTTTCC+AGG | + | chr5_2:63406024-63406043 | None:intergenic | 45.0% |
| GCTCAAGGTGTGAAATTCAG+TGG | - | chr5_2:63406030-63406049 | Msa0781080:intron | 45.0% | |
| AGCCAAGATAGCAACATGGA+TGG | - | chr5_2:63406931-63406950 | Msa0781080:intron | 45.0% | |
| TCATCATCATCTTCAGCAGC+AGG | + | chr5_2:63407432-63407451 | None:intergenic | 45.0% | |
| CCTCTGTTTCATCACCAAAG+AGG | + | chr5_2:63407461-63407480 | None:intergenic | 45.0% | |
| !! | CCTCTTTGGTGATGAAACAG+AGG | - | chr5_2:63407458-63407477 | Msa0781080:intron | 45.0% |
| !! | CTTTGGTGATGAAACAGAGG+AGG | - | chr5_2:63407461-63407480 | Msa0781080:intron | 45.0% |
| ATAAGAAGGCAGCAGAGGAA+AGG | - | chr5_2:63407484-63407503 | Msa0781080:intron | 45.0% | |
| TAAGAAGGCAGCAGAGGAAA+GGG | - | chr5_2:63407485-63407504 | Msa0781080:intron | 45.0% | |
| ATGTCTGTCTCATCATCCCA+TGG | + | chr5_2:63407692-63407711 | None:intergenic | 45.0% | |
| TGAGACAGACATGAAGAAGC+TGG | - | chr5_2:63407700-63407719 | Msa0781080:intron | 45.0% | |
| AGACATGAAGAAGCTGGAAG+AGG | - | chr5_2:63407706-63407725 | Msa0781080:intron | 45.0% | |
| GAAATTCCCGGTTTAACCTG+GGG | - | chr5_2:63407743-63407762 | Msa0781080:intron | 45.0% | |
| ! | TGCATTTGTTACAGCCAAGC+TGG | - | chr5_2:63407870-63407889 | Msa0781080:intron | 45.0% |
| ! | AAGCTGGTTGCTGTTGGATA+CGG | - | chr5_2:63407886-63407905 | Msa0781080:intron | 45.0% |
| AAGAAGAAACGACAGAGTGG+AGG | + | chr5_2:63408118-63408137 | None:intergenic | 45.0% | |
| !! | TGTTTGGTGTGTTTCAGTGG+TGG | - | chr5_2:63408141-63408160 | Msa0781080:intron | 45.0% |
| TCGAACACCATGCACATTTG+TGG | - | chr5_2:63408230-63408249 | Msa0781080:intron | 45.0% | |
| CGAACACCATGCACATTTGT+GGG | - | chr5_2:63408231-63408250 | Msa0781080:intron | 45.0% | |
| GCTAATCCCACAAATGTGCA+TGG | + | chr5_2:63408240-63408259 | None:intergenic | 45.0% | |
| CAATATGACGATTGTGCCTC+AGG | + | chr5_2:63408516-63408535 | None:intergenic | 45.0% | |
| CTGAGGCACAATCGTCATAT+TGG | - | chr5_2:63408514-63408533 | Msa0781080:five_prime_UTR | 45.0% | |
| GTGTCACCAAATGATTGGCA+TGG | - | chr5_2:63408554-63408573 | Msa0781080:five_prime_UTR | 45.0% | |
| !!! | TTGATTTTTTTTTTTATAAA+AGG | + | chr5_2:63407825-63407844 | None:intergenic | 5.0% |
| TAGGGTTTGCGATGAATCGG+TGG | + | chr5_2:63405324-63405343 | None:intergenic | 50.0% | |
| ! | GTTCGCAGCGTTGAAATTCC+CGG | - | chr5_2:63407731-63407750 | Msa0781080:intron | 50.0% |
| ACATGCTCCCCAGGTTAAAC+CGG | + | chr5_2:63407753-63407772 | None:intergenic | 50.0% | |
| GTATCCAACAGCAACCAGCT+TGG | + | chr5_2:63407887-63407906 | None:intergenic | 50.0% | |
| ATGCGACAATGTCACAGCTC+TGG | + | chr5_2:63408014-63408033 | None:intergenic | 50.0% | |
| AACGACAGAGTGGAGGAGAA+GGG | + | chr5_2:63408111-63408130 | None:intergenic | 50.0% | |
| AAACGACAGAGTGGAGGAGA+AGG | + | chr5_2:63408112-63408131 | None:intergenic | 50.0% | |
| AGCCCTTGCTAGTATACTGC+TGG | - | chr5_2:63408594-63408613 | Msa0781080:five_prime_UTR | 50.0% | |
| GTAAAGTTGCGATCATGCCG+TGG | - | chr5_2:63408636-63408655 | Msa0781080:five_prime_UTR | 50.0% | |
| GGTTTGCGATGAATCGGTGG+CGG | + | chr5_2:63405321-63405340 | None:intergenic | 55.0% | |
| GGAGGATAAGAAGGCAGCAG+AGG | - | chr5_2:63407479-63407498 | Msa0781080:intron | 55.0% | |
| CATGCTCCCCAGGTTAAACC+GGG | + | chr5_2:63407752-63407771 | None:intergenic | 55.0% | |
| ACAGCCAAGCTGGTTGCTGT+TGG | - | chr5_2:63407880-63407899 | Msa0781080:intron | 55.0% | |
| !! | AGTGGAAGTGCTCCAGCTGC+AGG | - | chr5_2:63406048-63406067 | Msa0781080:intron | 60.0% |
| TTAGCAGGTGCTCCTGCAGC+TGG | + | chr5_2:63406063-63406082 | None:intergenic | 60.0% | |
| GAAGGCAGCAGAGGAAAGGG+AGG | - | chr5_2:63407488-63407507 | Msa0781080:intron | 60.0% | |
| GACAGAGTGGAGGAGAAGGG+AGG | + | chr5_2:63408108-63408127 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 63405167 | 63408674 | 63405167 | ID=Msa0781080;Name=Msa0781080 |
| chr5_2 | mRNA | 63405167 | 63408674 | 63405167 | ID=Msa0781080-mRNA-1;Parent=Msa0781080;Name=Msa0781080-mRNA-1;_AED=0.01;_eAED=0.01;_QI=177|1|1|1|1|1|6|627|222 |
| chr5_2 | exon | 63405167 | 63405957 | 63405167 | ID=Msa0781080-mRNA-1:exon:18859;Parent=Msa0781080-mRNA-1 |
| chr5_2 | exon | 63406071 | 63406184 | 63406071 | ID=Msa0781080-mRNA-1:exon:18858;Parent=Msa0781080-mRNA-1 |
| chr5_2 | exon | 63406301 | 63406418 | 63406301 | ID=Msa0781080-mRNA-1:exon:18857;Parent=Msa0781080-mRNA-1 |
| chr5_2 | exon | 63407755 | 63407824 | 63407755 | ID=Msa0781080-mRNA-1:exon:18856;Parent=Msa0781080-mRNA-1 |
| chr5_2 | exon | 63407958 | 63408074 | 63407958 | ID=Msa0781080-mRNA-1:exon:18855;Parent=Msa0781080-mRNA-1 |
| chr5_2 | exon | 63408412 | 63408674 | 63408412 | ID=Msa0781080-mRNA-1:exon:18854;Parent=Msa0781080-mRNA-1 |
| chr5_2 | five_prime_UTR | 63408498 | 63408674 | 63408498 | ID=Msa0781080-mRNA-1:five_prime_utr;Parent=Msa0781080-mRNA-1 |
| chr5_2 | CDS | 63408412 | 63408497 | 63408412 | ID=Msa0781080-mRNA-1:cds;Parent=Msa0781080-mRNA-1 |
| chr5_2 | CDS | 63407958 | 63408074 | 63407958 | ID=Msa0781080-mRNA-1:cds;Parent=Msa0781080-mRNA-1 |
| chr5_2 | CDS | 63407755 | 63407824 | 63407755 | ID=Msa0781080-mRNA-1:cds;Parent=Msa0781080-mRNA-1 |
| chr5_2 | CDS | 63406301 | 63406418 | 63406301 | ID=Msa0781080-mRNA-1:cds;Parent=Msa0781080-mRNA-1 |
| chr5_2 | CDS | 63406071 | 63406184 | 63406071 | ID=Msa0781080-mRNA-1:cds;Parent=Msa0781080-mRNA-1 |
| chr5_2 | CDS | 63405794 | 63405957 | 63405794 | ID=Msa0781080-mRNA-1:cds;Parent=Msa0781080-mRNA-1 |
| chr5_2 | three_prime_UTR | 63405167 | 63405793 | 63405167 | ID=Msa0781080-mRNA-1:three_prime_utr;Parent=Msa0781080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
