AlfalfaGEDB | Msa0044010

M. sativa cultivar zhongmu-4 / Msa0044010

KEGG: K02978
GO: GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF01667.20

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0044010	sp\|Q9M2F1\|RS272_ARATH	96.471	85	3	0	15	99	2	86	1.10e-57	175

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0044010	A0A151TEH8	96.552	87	3	0	13	99	1	87	3.50e-56	177

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007810	Msa0044010	-0.803987	2.681533e-49	-8.615850e-47
Msa0011920	Msa0044010	-0.805455	1.323673e-49	-8.615850e-47
Msa0021290	Msa0044010	0.800598	1.337121e-48	-8.615850e-47
Msa0021320	Msa0044010	0.802508	5.425932e-49	-8.615850e-47
Msa0027590	Msa0044010	0.821808	3.315432e-53	-8.615850e-47
Msa0027610	Msa0044010	-0.812632	3.844316e-51	-8.615850e-47
Msa0037180	Msa0044010	0.802103	6.576191e-49	-8.615850e-47
Msa0039750	Msa0044010	0.804439	2.159041e-49	-8.615850e-47
Msa0044010	Msa0059080	0.809906	1.500697e-50	-8.615850e-47
Msa0044010	Msa0072570	0.838162	3.386840e-57	-8.615850e-47
Msa0044010	Msa0075350	0.813517	2.458917e-51	-8.615850e-47
Msa0044010	Msa0075370	-0.802995	4.305289e-49	-8.615850e-47
Msa0044010	Msa0077320	0.854880	9.163991e-62	-8.615850e-47
Msa0044010	Msa0081700	-0.805007	1.642916e-49	-8.615850e-47
Msa0044010	Msa0090580	0.885202	9.965053e-72	-8.615850e-47
Msa0044010	Msa0091300	-0.806285	8.857994e-50	-8.615850e-47
Msa0044010	Msa0099090	-0.815141	1.076398e-51	-8.615850e-47
Msa0044010	Msa0114570	0.854971	8.625115e-62	-8.615850e-47
Msa0044010	Msa0123310	-0.823821	1.126904e-53	-8.615850e-47
Msa0044010	Msa0127910	-0.806673	7.336929e-50	-8.615850e-47
Msa0044010	Msa0150330	0.828368	9.349203e-55	-8.615850e-47
Msa0044010	Msa0169710	0.847772	9.359547e-60	-8.615850e-47
Msa0044010	Msa0172930	0.837807	4.179555e-57	-8.615850e-47
Msa0044010	Msa0174060	-0.827466	1.540666e-54	-8.615850e-47
Msa0044010	Msa0183840	0.882156	1.318768e-70	-8.615850e-47
Msa0044010	Msa0192050	0.832179	1.095915e-55	-8.615850e-47
Msa0044010	Msa0195030	0.854059	1.583477e-61	-8.615850e-47
Msa0044010	Msa0233920	0.817025	4.084414e-52	-8.615850e-47
Msa0044010	Msa0237180	0.843446	1.394552e-58	-8.615850e-47
Msa0044010	Msa0239420	0.805544	1.268501e-49	-8.615850e-47
Msa0044010	Msa0264580	-0.807626	4.612033e-50	-8.615850e-47
Msa0044010	Msa0265250	0.831106	2.014934e-55	-8.615850e-47
Msa0044010	Msa0274940	0.807825	4.184197e-50	-8.615850e-47
Msa0044010	Msa0281330	0.864533	1.135738e-64	-8.615850e-47
Msa0044010	Msa0281370	0.875403	3.167016e-68	-8.615850e-47
Msa0044010	Msa0294200	0.803101	4.093619e-49	-8.615850e-47
Msa0044010	Msa0307380	0.803885	2.815763e-49	-8.615850e-47
Msa0044010	Msa0307430	0.818294	2.112613e-52	-8.615850e-47
Msa0044010	Msa0315660	0.845451	4.028902e-59	-8.615850e-47
Msa0044010	Msa0339970	-0.810056	1.393229e-50	-8.615850e-47
Msa0044010	Msa0376830	0.815463	9.126390e-52	-8.615850e-47
Msa0044010	Msa0377520	0.810817	9.545222e-51	-8.615850e-47
Msa0044010	Msa0383930	0.803386	3.573249e-49	-8.615850e-47
Msa0044010	Msa0385030	0.825290	5.082123e-54	-8.615850e-47
Msa0044010	Msa0390590	-0.808544	2.940370e-50	-8.615850e-47
Msa0044010	Msa0412480	-0.807777	4.283367e-50	-8.615850e-47
Msa0044010	Msa0430130	0.814515	1.481568e-51	-8.615850e-47
Msa0044010	Msa0432260	-0.811736	6.029667e-51	-8.615850e-47
Msa0044010	Msa0434370	0.827305	1.684059e-54	-8.615850e-47
Msa0044010	Msa0468660	0.818996	1.464364e-52	-8.615850e-47
Msa0044010	Msa0526150	0.800454	1.430339e-48	-8.615850e-47
Msa0044010	Msa0526490	-0.866198	3.397899e-65	-8.615850e-47
Msa0044010	Msa0526500	-0.880627	4.695745e-70	-8.615850e-47
Msa0044010	Msa0545750	-0.803801	2.931139e-49	-8.615850e-47
Msa0044010	Msa0550420	0.800191	1.618159e-48	-8.615850e-47
Msa0044010	Msa0563440	0.855286	6.986144e-62	-8.615850e-47
Msa0044010	Msa0569980	-0.822765	1.987837e-53	-8.615850e-47
Msa0044010	Msa0573550	0.805488	1.302909e-49	-8.615850e-47
Msa0044010	Msa0577690	0.800743	1.249185e-48	-8.615850e-47
Msa0044010	Msa0579080	0.816522	5.294765e-52	-8.615850e-47
Msa0044010	Msa0603090	0.803923	2.765250e-49	-8.615850e-47
Msa0044010	Msa0610240	-0.802462	5.547266e-49	-8.615850e-47
Msa0044010	Msa0622230	0.814381	1.585791e-51	-8.615850e-47
Msa0044010	Msa0643820	0.806691	7.274293e-50	-8.615850e-47
Msa0044010	Msa0651870	0.845798	3.242788e-59	-8.615850e-47
Msa0044010	Msa0651890	0.846701	1.840491e-59	-8.615850e-47
Msa0044010	Msa0681220	0.821410	4.097803e-53	-8.615850e-47
Msa0044010	Msa0700410	0.838648	2.537561e-57	-8.615850e-47
Msa0044010	Msa0703430	-0.804763	1.848117e-49	-8.615850e-47
Msa0044010	Msa0704690	0.817681	2.906865e-52	-8.615850e-47
Msa0044010	Msa0707360	0.809758	1.615341e-50	-8.615850e-47
Msa0044010	Msa0733240	-0.822929	1.820731e-53	-8.615850e-47
Msa0044010	Msa0759230	0.800248	1.575760e-48	-8.615850e-47
Msa0044010	Msa0779450	-0.805453	1.325283e-49	-8.615850e-47
Msa0044010	Msa0781080	0.809479	1.853815e-50	-8.615850e-47
Msa0044010	Msa0812020	-0.810969	8.846978e-51	-8.615850e-47
Msa0044010	Msa0861320	0.824351	8.460506e-54	-8.615850e-47
Msa0044010	Msa0903460	-0.807007	6.238012e-50	-8.615850e-47
Msa0044010	Msa0929700	0.815422	9.322795e-52	-8.615850e-47
Msa0044010	Msa1014550	-0.825992	3.464398e-54	-8.615850e-47
Msa0044010	Msa1019090	0.856084	4.084589e-62	-8.615850e-47
Msa0044010	Msa1025200	0.803660	3.136114e-49	-8.615850e-47
Msa0044010	Msa1025220	0.807471	4.974708e-50	-8.615850e-47
Msa0044010	Msa1041680	0.801824	7.501900e-49	-8.615850e-47
Msa0044010	Msa1055520	-0.828944	6.783191e-55	-8.615850e-47
Msa0044010	Msa1078280	-0.803342	3.648635e-49	-8.615850e-47
Msa0044010	Msa1087890	0.807540	4.809210e-50	-8.615850e-47
Msa0044010	Msa1088400	-0.803568	3.276948e-49	-8.615850e-47
Msa0044010	Msa1089220	0.831288	1.817108e-55	-8.615850e-47
Msa0044010	Msa1093190	-0.825268	5.143101e-54	-8.615850e-47
Msa0044010	Msa1104020	-0.805110	1.563355e-49	-8.615850e-47
Msa0044010	Msa1147650	0.817200	3.730620e-52	-8.615850e-47
Msa0044010	Msa1165640	0.809932	1.482079e-50	-8.615850e-47
Msa0044010	Msa1169590	-0.801138	1.037132e-48	-8.615850e-47
Msa0044010	Msa1186030	0.812789	3.552082e-51	-8.615850e-47
Msa0044010	Msa1206240	0.848001	8.092432e-60	-8.615850e-47
Msa0044010	Msa1213470	-0.831025	2.108885e-55	-8.615850e-47
Msa0044010	Msa1218170	0.821330	4.276819e-53	-8.615850e-47
Msa0044010	Msa1220580	0.802468	5.530714e-49	-8.615850e-47
Msa0044010	Msa1260520	-0.817900	2.593957e-52	-8.615850e-47
Msa0044010	Msa1300370	-0.833020	6.777954e-56	-8.615850e-47
Msa0044010	Msa1363270	-0.833436	5.340466e-56	-8.615850e-47
Msa0044010	Msa1363280	-0.883602	3.904193e-71	-8.615850e-47
Msa0044010	Msa1364110	0.864063	1.591780e-64	-8.615850e-47
Msa0044010	Msa1384410	-0.823768	1.159469e-53	-8.615850e-47
Msa0044010	Msa1408990	0.804712	1.893427e-49	-8.615850e-47
Msa0044010	Msa1417110	0.802433	5.624036e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0044010	MtrunA17_Chr2g0291901	100.000	85	0	15	99	2	86	8.33e-60	177
Msa0044010	MtrunA17_Chr1g0210581	100.000	85	0	15	99	2	86	8.33e-60	177
Msa0044010	MtrunA17_Chr2g0283551	98.824	85	1	15	99	2	86	1.90e-59	176

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0044010	AT3G61110.1	96.471	85	3	15	99	2	86	1.12e-58	175
Msa0044010	AT2G45710.1	95.181	83	4	15	97	2	84	1.05e-55	167
Msa0044010	AT5G47930.1	96.386	83	3	15	97	2	84	2.85e-55	166
Msa0044010	AT3G61111.1	83.529	85	14	15	99	2	86	1.35e-48	149
Msa0044010	AT3G61111.2	80.488	41	8	15	55	2	42	1.11e-17	71.2

Find 42 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GATTATTTAATGAGAAATTT+TGG	0.186968	1_1:+75496702	Msa0044010:three_prime_UTR
TTGCTTTGCCGCCGGTTGGC+TGG	0.271725	1_1:-75496592	None:intergenic
TCCACAGCCCTCTCAACTTT+GGG	0.311830	1_1:-75495321	None:intergenic
TAACAGAGGGGTGCTCCTTC+AGG	0.320285	1_1:+75496618	Msa0044010:CDS
ATCTCCTAACTCATTCTTCA+TGG	0.338607	1_1:+75495731	Msa0044010:CDS
TCAAGAGATCGATGTCGTTT+TGG	0.351397	1_1:-75495656	None:intergenic
TGAGTAAATTTGGTTTGATA+TGG	0.363323	1_1:+75496807	Msa0044010:three_prime_UTR
TTCCACAGCCCTCTCAACTT+TGG	0.365114	1_1:-75495322	None:intergenic
CACTAGTCATGCTAAATTAG+AGG	0.384775	1_1:-75496967	None:intergenic
GGAAGAAGGGTGATTAGTTA+TGG	0.386772	1_1:+75496639	Msa0044010:exon
GCATGACTAGTGTACTTGTT+TGG	0.418818	1_1:+75496978	Msa0044010:three_prime_UTR
AATACCATGAAGAATGAGTT+AGG	0.426658	1_1:-75495735	None:intergenic
AAATTTAATTTAGTGCTAAC+GGG	0.427882	1_1:-75496844	None:intergenic
CTTACATGTTGAAGCATCCT+TGG	0.445045	1_1:-75495871	None:intergenic
AGCCAACCGGCGGCAAAGCA+AGG	0.463038	1_1:+75496594	Msa0044010:CDS
ACACATTAACACAAGACAAC+TGG	0.469557	1_1:-75496755	None:intergenic
GGTATGGCTACATGTGTCAT+AGG	0.470144	1_1:+75496999	Msa0044010:three_prime_UTR
ACGGTATTGTGCCAGCCAAC+CGG	0.474939	1_1:+75496581	Msa0044010:CDS
AGCCTTGCTTTGCCGCCGGT+TGG	0.478403	1_1:-75496596	None:intergenic
TAAATTTAATTTAGTGCTAA+CGG	0.479815	1_1:-75496845	None:intergenic
CACCAGCAGAGCTTGAGAAA+AGG	0.486731	1_1:+75495682	Msa0044010:CDS
GGGGTGCTCCTTCAGGAAGA+AGG	0.503456	1_1:+75496625	Msa0044010:CDS
TCTCAAACAGTCGTGGTTTG+CGG	0.511373	1_1:+75496548	Msa0044010:CDS
TAAATTTGGTTTGATATGGT+TGG	0.518219	1_1:+75496811	Msa0044010:three_prime_UTR
TGTTAGCCTTGCTTTGCCGC+CGG	0.526081	1_1:-75496600	None:intergenic
ACTAGTGTACTTGTTTGGTA+TGG	0.527204	1_1:+75496983	Msa0044010:three_prime_UTR
TTATAGGATGTCAAATGCCA+AGG	0.569104	1_1:+75495854	Msa0044010:intron
GGGTGCTCCTTCAGGAAGAA+GGG	0.579020	1_1:+75496626	Msa0044010:CDS
GGCAAAGCAAGGCTAACAGA+GGG	0.582316	1_1:+75496605	Msa0044010:CDS
GATGGGACCCAAAGTTGAGA+GGG	0.597213	1_1:+75495314	None:intergenic
ACCCAAAGTTGAGAGGGCTG+TGG	0.599911	1_1:+75495320	Msa0044010:CDS
ACTAGTCATGCTAAATTAGA+GGG	0.602198	1_1:-75496966	None:intergenic
CTAATCACCCTTCTTCCTGA+AGG	0.602303	1_1:-75496633	None:intergenic
AGATGGGACCCAAAGTTGAG+AGG	0.608186	1_1:+75495313	None:intergenic
TAGCCACTCTCAAACAGTCG+TGG	0.620995	1_1:+75496541	Msa0044010:CDS
GGCTGTGGAATCAAATGTGG+AGG	0.628873	1_1:+75495335	Msa0044010:CDS
CGGCAAAGCAAGGCTAACAG+AGG	0.648379	1_1:+75496604	Msa0044010:CDS
GGTTTGCGGCAACTGTCAGA+CGG	0.650064	1_1:+75496562	Msa0044010:CDS
AAACCACGACTGTTTGAGAG+TGG	0.670924	1_1:-75496544	None:intergenic
GAGGGCTGTGGAATCAAATG+TGG	0.673501	1_1:+75495332	Msa0044010:CDS
GCAAAGCAAGGCTAACAGAG+GGG	0.682022	1_1:+75496606	Msa0044010:CDS
GTATTGTGCCAGCCAACCGG+CGG	0.694777	1_1:+75496584	Msa0044010:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAAAAAAACAAATTACAAA+CGG	-	chr1_1:75495807-75495826	None:intergenic	10.0%
!!!	TTATTATATTTCTATCATTT+AGG	+	chr1_1:75496242-75496261	Msa0044010:intron	10.0%
!!	AAAAAAAAACAAATTACAAA+CGG	-	chr1_1:75495807-75495826	None:intergenic	10.0%
!!!	TTATTATATTTCTATCATTT+AGG	+	chr1_1:75496242-75496261	Msa0044010:intron	10.0%
!!	TAAATGGAAAATCTATTTAA+AGG	-	chr1_1:75495438-75495457	None:intergenic	15.0%
!!	AATTAACATATACATAACAA+TGG	-	chr1_1:75495776-75495795	None:intergenic	15.0%
!!!	AAATTACTTTTTTATTCAAC+CGG	-	chr1_1:75495964-75495983	None:intergenic	15.0%
!!	ATGACTAAATTAATAGAATT+CGG	-	chr1_1:75496118-75496137	None:intergenic	15.0%
!!!	GATTATTTAATGAGAAATTT+TGG	+	chr1_1:75496702-75496721	Msa0044010:three_prime_UTR	15.0%
!!!	TAAATTTAATTTAGTGCTAA+CGG	-	chr1_1:75496848-75496867	None:intergenic	15.0%
!!	TAAATGGAAAATCTATTTAA+AGG	-	chr1_1:75495438-75495457	None:intergenic	15.0%
!!	AATTAACATATACATAACAA+TGG	-	chr1_1:75495776-75495795	None:intergenic	15.0%
!!!	AAATTACTTTTTTATTCAAC+CGG	-	chr1_1:75495964-75495983	None:intergenic	15.0%
!!	ATGACTAAATTAATAGAATT+CGG	-	chr1_1:75496118-75496137	None:intergenic	15.0%
!!!	GATTATTTAATGAGAAATTT+TGG	+	chr1_1:75496702-75496721	Msa0044010:three_prime_UTR	15.0%
!!!	TAAATTTAATTTAGTGCTAA+CGG	-	chr1_1:75496848-75496867	None:intergenic	15.0%
!!!	TATATCATATCTTTTTCACA+TGG	+	chr1_1:75495381-75495400	Msa0044010:intron	20.0%
!!!	ATATCATATCTTTTTCACAT+GGG	+	chr1_1:75495382-75495401	Msa0044010:intron	20.0%
!!	AAAAGACTGTAAATGTTAAA+TGG	-	chr1_1:75495454-75495473	None:intergenic	20.0%
!!!	TTTCTCTTTGTATTTGTTAT+AGG	+	chr1_1:75495838-75495857	Msa0044010:intron	20.0%
!!!	AATTACTTTTTTATTCAACC+GGG	-	chr1_1:75495963-75495982	None:intergenic	20.0%
!!	GGTTTATTCAACTAAAAAAA+TGG	-	chr1_1:75496025-75496044	None:intergenic	20.0%
!!	TAGTTCAATGACTAAATTTA+AGG	-	chr1_1:75496046-75496065	None:intergenic	20.0%
!!	TTATTATACTTATACAACTC+AGG	-	chr1_1:75496089-75496108	None:intergenic	20.0%
!!	TGACTAAATTAATAGAATTC+GGG	-	chr1_1:75496117-75496136	None:intergenic	20.0%
!!	CATCAATTTAATCTATGTTA+GGG	-	chr1_1:75496156-75496175	None:intergenic	20.0%
!!!	TATGCATATTTTTATCGTTT+AGG	+	chr1_1:75496181-75496200	Msa0044010:intron	20.0%
!!!	TTTGACTTGTTAGTTTATAA+TGG	+	chr1_1:75496362-75496381	Msa0044010:intron	20.0%
!!	TTTATAATGGTTGAAATTTG+TGG	+	chr1_1:75496375-75496394	Msa0044010:intron	20.0%
!!	AATTGAAACCAACTTATTAT+AGG	+	chr1_1:75496454-75496473	Msa0044010:intron	20.0%
!!	TTTATAATTGTTGAAATCTG+TGG	+	chr1_1:75496500-75496519	Msa0044010:intron	20.0%
!!!	AAATTTAATTTAGTGCTAAC+GGG	-	chr1_1:75496847-75496866	None:intergenic	20.0%
!!!	TATATCATATCTTTTTCACA+TGG	+	chr1_1:75495381-75495400	Msa0044010:intron	20.0%
!!!	ATATCATATCTTTTTCACAT+GGG	+	chr1_1:75495382-75495401	Msa0044010:intron	20.0%
!!	AAAAGACTGTAAATGTTAAA+TGG	-	chr1_1:75495454-75495473	None:intergenic	20.0%
!!!	TTTCTCTTTGTATTTGTTAT+AGG	+	chr1_1:75495838-75495857	Msa0044010:intron	20.0%
!!!	AATTACTTTTTTATTCAACC+GGG	-	chr1_1:75495963-75495982	None:intergenic	20.0%
!!	GGTTTATTCAACTAAAAAAA+TGG	-	chr1_1:75496025-75496044	None:intergenic	20.0%
!!	TAGTTCAATGACTAAATTTA+AGG	-	chr1_1:75496046-75496065	None:intergenic	20.0%
!!	TTATTATACTTATACAACTC+AGG	-	chr1_1:75496089-75496108	None:intergenic	20.0%
!!	TGACTAAATTAATAGAATTC+GGG	-	chr1_1:75496117-75496136	None:intergenic	20.0%
!!	CATCAATTTAATCTATGTTA+GGG	-	chr1_1:75496156-75496175	None:intergenic	20.0%
!!!	TATGCATATTTTTATCGTTT+AGG	+	chr1_1:75496181-75496200	Msa0044010:intron	20.0%
!!!	TTTGACTTGTTAGTTTATAA+TGG	+	chr1_1:75496362-75496381	Msa0044010:intron	20.0%
!!	TTTATAATGGTTGAAATTTG+TGG	+	chr1_1:75496375-75496394	Msa0044010:intron	20.0%
!!	AATTGAAACCAACTTATTAT+AGG	+	chr1_1:75496454-75496473	Msa0044010:intron	20.0%
!!	TTTATAATTGTTGAAATCTG+TGG	+	chr1_1:75496500-75496519	Msa0044010:intron	20.0%
!!!	AAATTTAATTTAGTGCTAAC+GGG	-	chr1_1:75496847-75496866	None:intergenic	20.0%
!	AATCTCATAAAGAGTTTCTA+GGG	+	chr1_1:75495500-75495519	Msa0044010:intron	25.0%
!	TAAAGAAACAAAAAAGAGAG+TGG	-	chr1_1:75495566-75495585	None:intergenic	25.0%
!	CAAACTTAATCAATCAGAAT+TGG	-	chr1_1:75495612-75495631	None:intergenic	25.0%
!!!	TTGATGATTTTGTTGTTTTC+AGG	+	chr1_1:75495629-75495648	Msa0044010:intron	25.0%
!	CCATCAATTTAATCTATGTT+AGG	-	chr1_1:75496157-75496176	None:intergenic	25.0%
!	CCTAACATAGATTAAATTGA+TGG	+	chr1_1:75496154-75496173	Msa0044010:intron	25.0%
!!	AATTTGACTTCTACTTTGAA+GGG	-	chr1_1:75496425-75496444	None:intergenic	25.0%
!!	AAATTTGACTTCTACTTTGA+AGG	-	chr1_1:75496426-75496445	None:intergenic	25.0%
!!!	ATAAAACTCTAGTCTTTTTG+AGG	+	chr1_1:75496669-75496688	Msa0044010:three_prime_UTR	25.0%
!!!	TAAAACTCTAGTCTTTTTGA+GGG	+	chr1_1:75496670-75496689	Msa0044010:three_prime_UTR	25.0%
!!!	GAGAAGATTTTGAGTAAATT+TGG	+	chr1_1:75496797-75496816	Msa0044010:three_prime_UTR	25.0%
!!!	TGAGTAAATTTGGTTTGATA+TGG	+	chr1_1:75496807-75496826	Msa0044010:three_prime_UTR	25.0%
!!!	TAAATTTGGTTTGATATGGT+TGG	+	chr1_1:75496811-75496830	Msa0044010:three_prime_UTR	25.0%
!	AATCTCATAAAGAGTTTCTA+GGG	+	chr1_1:75495500-75495519	Msa0044010:intron	25.0%
!	TAAAGAAACAAAAAAGAGAG+TGG	-	chr1_1:75495566-75495585	None:intergenic	25.0%
!	CAAACTTAATCAATCAGAAT+TGG	-	chr1_1:75495612-75495631	None:intergenic	25.0%
!!!	TTGATGATTTTGTTGTTTTC+AGG	+	chr1_1:75495629-75495648	Msa0044010:intron	25.0%
!	CCATCAATTTAATCTATGTT+AGG	-	chr1_1:75496157-75496176	None:intergenic	25.0%
!	CCTAACATAGATTAAATTGA+TGG	+	chr1_1:75496154-75496173	Msa0044010:intron	25.0%
!!	AATTTGACTTCTACTTTGAA+GGG	-	chr1_1:75496425-75496444	None:intergenic	25.0%
!!	AAATTTGACTTCTACTTTGA+AGG	-	chr1_1:75496426-75496445	None:intergenic	25.0%
!!!	ATAAAACTCTAGTCTTTTTG+AGG	+	chr1_1:75496669-75496688	Msa0044010:three_prime_UTR	25.0%
!!!	TAAAACTCTAGTCTTTTTGA+GGG	+	chr1_1:75496670-75496689	Msa0044010:three_prime_UTR	25.0%
!!!	GAGAAGATTTTGAGTAAATT+TGG	+	chr1_1:75496797-75496816	Msa0044010:three_prime_UTR	25.0%
!!!	TGAGTAAATTTGGTTTGATA+TGG	+	chr1_1:75496807-75496826	Msa0044010:three_prime_UTR	25.0%
!!!	TAAATTTGGTTTGATATGGT+TGG	+	chr1_1:75496811-75496830	Msa0044010:three_prime_UTR	25.0%
	AACTCTTTATGAGATTGGAA+GGG	-	chr1_1:75495496-75495515	None:intergenic	30.0%
	AAACTCTTTATGAGATTGGA+AGG	-	chr1_1:75495497-75495516	None:intergenic	30.0%
	CTAGAAACTCTTTATGAGAT+TGG	-	chr1_1:75495501-75495520	None:intergenic	30.0%
	CAATCTCATAAAGAGTTTCT+AGG	+	chr1_1:75495499-75495518	Msa0044010:intron	30.0%
	AATACCATGAAGAATGAGTT+AGG	-	chr1_1:75495738-75495757	None:intergenic	30.0%
	TTATATAGATACTAGAGACC+CGG	+	chr1_1:75495942-75495961	Msa0044010:intron	30.0%
	CAATGTCACAATGATTGTTA+TGG	+	chr1_1:75496206-75496225	Msa0044010:intron	30.0%
!	TCCTGTATAAGTCGAATTTT+TGG	+	chr1_1:75496302-75496321	Msa0044010:intron	30.0%
	ACCAAAAATTCGACTTATAC+AGG	-	chr1_1:75496306-75496325	None:intergenic	30.0%
!	CTTTGAAGGGAAAATAAATG+TGG	-	chr1_1:75496412-75496431	None:intergenic	30.0%
!!	AAAGGTGTCCTATAATAAGT+TGG	-	chr1_1:75496465-75496484	None:intergenic	30.0%
	AAACCAACAAGTCAAATCAA+AGG	-	chr1_1:75496483-75496502	None:intergenic	30.0%
!!	AAAACTCTAGTCTTTTTGAG+GGG	+	chr1_1:75496671-75496690	Msa0044010:three_prime_UTR	30.0%
	ACTAGTCATGCTAAATTAGA+GGG	-	chr1_1:75496969-75496988	None:intergenic	30.0%
	AACTCTTTATGAGATTGGAA+GGG	-	chr1_1:75495496-75495515	None:intergenic	30.0%
	AAACTCTTTATGAGATTGGA+AGG	-	chr1_1:75495497-75495516	None:intergenic	30.0%
	CTAGAAACTCTTTATGAGAT+TGG	-	chr1_1:75495501-75495520	None:intergenic	30.0%
	CAATCTCATAAAGAGTTTCT+AGG	+	chr1_1:75495499-75495518	Msa0044010:intron	30.0%
	AATACCATGAAGAATGAGTT+AGG	-	chr1_1:75495738-75495757	None:intergenic	30.0%
	TTATATAGATACTAGAGACC+CGG	+	chr1_1:75495942-75495961	Msa0044010:intron	30.0%
	CAATGTCACAATGATTGTTA+TGG	+	chr1_1:75496206-75496225	Msa0044010:intron	30.0%
!	TCCTGTATAAGTCGAATTTT+TGG	+	chr1_1:75496302-75496321	Msa0044010:intron	30.0%
	ACCAAAAATTCGACTTATAC+AGG	-	chr1_1:75496306-75496325	None:intergenic	30.0%
!	CTTTGAAGGGAAAATAAATG+TGG	-	chr1_1:75496412-75496431	None:intergenic	30.0%
!!	AAAGGTGTCCTATAATAAGT+TGG	-	chr1_1:75496465-75496484	None:intergenic	30.0%
	AAACCAACAAGTCAAATCAA+AGG	-	chr1_1:75496483-75496502	None:intergenic	30.0%
!!	AAAACTCTAGTCTTTTTGAG+GGG	+	chr1_1:75496671-75496690	Msa0044010:three_prime_UTR	30.0%
	ACTAGTCATGCTAAATTAGA+GGG	-	chr1_1:75496969-75496988	None:intergenic	30.0%
!	TTTTTCACATGGGCTCTTAA+TGG	+	chr1_1:75495392-75495411	Msa0044010:intron	35.0%
	ACTCTTTATGAGATTGGAAG+GGG	-	chr1_1:75495495-75495514	None:intergenic	35.0%
	ATCTCCTAACTCATTCTTCA+TGG	+	chr1_1:75495731-75495750	Msa0044010:CDS	35.0%
	TTATAGGATGTCAAATGCCA+AGG	+	chr1_1:75495854-75495873	Msa0044010:intron	35.0%
!!	ACACCTTTGATTTGACTTGT+TGG	+	chr1_1:75496477-75496496	Msa0044010:intron	35.0%
	ACACATTAACACAAGACAAC+TGG	-	chr1_1:75496758-75496777	None:intergenic	35.0%
	CACTAGTCATGCTAAATTAG+AGG	-	chr1_1:75496970-75496989	None:intergenic	35.0%
	ACTAGTGTACTTGTTTGGTA+TGG	+	chr1_1:75496983-75497002	Msa0044010:three_prime_UTR	35.0%
!	TTTTTCACATGGGCTCTTAA+TGG	+	chr1_1:75495392-75495411	Msa0044010:intron	35.0%
	ACTCTTTATGAGATTGGAAG+GGG	-	chr1_1:75495495-75495514	None:intergenic	35.0%
	ATCTCCTAACTCATTCTTCA+TGG	+	chr1_1:75495731-75495750	Msa0044010:CDS	35.0%
	TTATAGGATGTCAAATGCCA+AGG	+	chr1_1:75495854-75495873	Msa0044010:intron	35.0%
!!	ACACCTTTGATTTGACTTGT+TGG	+	chr1_1:75496477-75496496	Msa0044010:intron	35.0%
	ACACATTAACACAAGACAAC+TGG	-	chr1_1:75496758-75496777	None:intergenic	35.0%
	CACTAGTCATGCTAAATTAG+AGG	-	chr1_1:75496970-75496989	None:intergenic	35.0%
	ACTAGTGTACTTGTTTGGTA+TGG	+	chr1_1:75496983-75497002	Msa0044010:three_prime_UTR	35.0%
	CAATCAGAATTGGAGCGATT+CGG	-	chr1_1:75495602-75495621	None:intergenic	40.0%
!!	TCAAGAGATCGATGTCGTTT+TGG	-	chr1_1:75495659-75495678	None:intergenic	40.0%
!	CTTACATGTTGAAGCATCCT+TGG	-	chr1_1:75495874-75495893	None:intergenic	40.0%
!	GGAAGAAGGGTGATTAGTTA+TGG	+	chr1_1:75496639-75496658	Msa0044010:exon	40.0%
	GCATGACTAGTGTACTTGTT+TGG	+	chr1_1:75496978-75496997	Msa0044010:three_prime_UTR	40.0%
	CAATCAGAATTGGAGCGATT+CGG	-	chr1_1:75495602-75495621	None:intergenic	40.0%
!!	TCAAGAGATCGATGTCGTTT+TGG	-	chr1_1:75495659-75495678	None:intergenic	40.0%
!	CTTACATGTTGAAGCATCCT+TGG	-	chr1_1:75495874-75495893	None:intergenic	40.0%
!	GGAAGAAGGGTGATTAGTTA+TGG	+	chr1_1:75496639-75496658	Msa0044010:exon	40.0%
	GCATGACTAGTGTACTTGTT+TGG	+	chr1_1:75496978-75496997	Msa0044010:three_prime_UTR	40.0%
	AGGCGACTCTCACTCATATT+GGG	-	chr1_1:75495418-75495437	None:intergenic	45.0%
	AAGGCGACTCTCACTCATAT+TGG	-	chr1_1:75495419-75495438	None:intergenic	45.0%
	TCATCTCTCAACCTCGACAA+TGG	+	chr1_1:75495536-75495555	Msa0044010:intron	45.0%
	AGAGTGGTTAACCATTGTCG+AGG	-	chr1_1:75495550-75495569	None:intergenic	45.0%
!	TTTTCTCAAGCTCTGCTGGT+GGG	-	chr1_1:75495683-75495702	None:intergenic	45.0%
!	TTCCTTTTCTCAAGCTCTGC+TGG	-	chr1_1:75495687-75495706	None:intergenic	45.0%
	AAACCACGACTGTTTGAGAG+TGG	-	chr1_1:75496547-75496566	None:intergenic	45.0%
	TCTCAAACAGTCGTGGTTTG+CGG	+	chr1_1:75496548-75496567	Msa0044010:CDS	45.0%
	CTAATCACCCTTCTTCCTGA+AGG	-	chr1_1:75496636-75496655	None:intergenic	45.0%
	GGTATGGCTACATGTGTCAT+AGG	+	chr1_1:75496999-75497018	Msa0044010:three_prime_UTR	45.0%
	AGGCGACTCTCACTCATATT+GGG	-	chr1_1:75495418-75495437	None:intergenic	45.0%
	AAGGCGACTCTCACTCATAT+TGG	-	chr1_1:75495419-75495438	None:intergenic	45.0%
	TCATCTCTCAACCTCGACAA+TGG	+	chr1_1:75495536-75495555	Msa0044010:intron	45.0%
	AGAGTGGTTAACCATTGTCG+AGG	-	chr1_1:75495550-75495569	None:intergenic	45.0%
!	TTTTCTCAAGCTCTGCTGGT+GGG	-	chr1_1:75495683-75495702	None:intergenic	45.0%
!	TTCCTTTTCTCAAGCTCTGC+TGG	-	chr1_1:75495687-75495706	None:intergenic	45.0%
	AAACCACGACTGTTTGAGAG+TGG	-	chr1_1:75496547-75496566	None:intergenic	45.0%
	TCTCAAACAGTCGTGGTTTG+CGG	+	chr1_1:75496548-75496567	Msa0044010:CDS	45.0%
	CTAATCACCCTTCTTCCTGA+AGG	-	chr1_1:75496636-75496655	None:intergenic	45.0%
	GGTATGGCTACATGTGTCAT+AGG	+	chr1_1:75496999-75497018	Msa0044010:three_prime_UTR	45.0%
!!!	TTTTTTTTTTTTTTTTTTGA+AGG	+	chr1_1:75496882-75496901	Msa0044010:intron	5.0%
!!!	TTTTTTTTTTTTTTTTTTGA+AGG	+	chr1_1:75496882-75496901	Msa0044010:intron	5.0%
	TCCACAGCCCTCTCAACTTT+GGG	-	chr1_1:75495324-75495343	None:intergenic	50.0%
	TTCCACAGCCCTCTCAACTT+TGG	-	chr1_1:75495325-75495344	None:intergenic	50.0%
	GAGGGCTGTGGAATCAAATG+TGG	+	chr1_1:75495332-75495351	Msa0044010:CDS	50.0%
	GGCTGTGGAATCAAATGTGG+AGG	+	chr1_1:75495335-75495354	Msa0044010:CDS	50.0%
!	TCAGAATTGGAGCGATTCGG+AGG	-	chr1_1:75495599-75495618	None:intergenic	50.0%
!	CTTTTCTCAAGCTCTGCTGG+TGG	-	chr1_1:75495684-75495703	None:intergenic	50.0%
	CACCAGCAGAGCTTGAGAAA+AGG	+	chr1_1:75495682-75495701	Msa0044010:CDS	50.0%
	TAGCCACTCTCAAACAGTCG+TGG	+	chr1_1:75496541-75496560	Msa0044010:CDS	50.0%
	GGCAAAGCAAGGCTAACAGA+GGG	+	chr1_1:75496605-75496624	Msa0044010:CDS	50.0%
	GCAAAGCAAGGCTAACAGAG+GGG	+	chr1_1:75496606-75496625	Msa0044010:CDS	50.0%
!!	CTCTAGTCTTTTTGAGGGGC+TGG	+	chr1_1:75496675-75496694	Msa0044010:three_prime_UTR	50.0%
	TCCACAGCCCTCTCAACTTT+GGG	-	chr1_1:75495324-75495343	None:intergenic	50.0%
	TTCCACAGCCCTCTCAACTT+TGG	-	chr1_1:75495325-75495344	None:intergenic	50.0%
	GAGGGCTGTGGAATCAAATG+TGG	+	chr1_1:75495332-75495351	Msa0044010:CDS	50.0%
	GGCTGTGGAATCAAATGTGG+AGG	+	chr1_1:75495335-75495354	Msa0044010:CDS	50.0%
!	TCAGAATTGGAGCGATTCGG+AGG	-	chr1_1:75495599-75495618	None:intergenic	50.0%
!	CTTTTCTCAAGCTCTGCTGG+TGG	-	chr1_1:75495684-75495703	None:intergenic	50.0%
	CACCAGCAGAGCTTGAGAAA+AGG	+	chr1_1:75495682-75495701	Msa0044010:CDS	50.0%
	TAGCCACTCTCAAACAGTCG+TGG	+	chr1_1:75496541-75496560	Msa0044010:CDS	50.0%
	GGCAAAGCAAGGCTAACAGA+GGG	+	chr1_1:75496605-75496624	Msa0044010:CDS	50.0%
	GCAAAGCAAGGCTAACAGAG+GGG	+	chr1_1:75496606-75496625	Msa0044010:CDS	50.0%
!!	CTCTAGTCTTTTTGAGGGGC+TGG	+	chr1_1:75496675-75496694	Msa0044010:three_prime_UTR	50.0%
	ACCCAAAGTTGAGAGGGCTG+TGG	+	chr1_1:75495320-75495339	Msa0044010:CDS	55.0%
	GGTTTGCGGCAACTGTCAGA+CGG	+	chr1_1:75496562-75496581	Msa0044010:CDS	55.0%
	ACGGTATTGTGCCAGCCAAC+CGG	+	chr1_1:75496581-75496600	Msa0044010:CDS	55.0%
!!	TGTTAGCCTTGCTTTGCCGC+CGG	-	chr1_1:75496603-75496622	None:intergenic	55.0%
	CGGCAAAGCAAGGCTAACAG+AGG	+	chr1_1:75496604-75496623	Msa0044010:CDS	55.0%
!!	TAACAGAGGGGTGCTCCTTC+AGG	+	chr1_1:75496618-75496637	Msa0044010:CDS	55.0%
	GGGTGCTCCTTCAGGAAGAA+GGG	+	chr1_1:75496626-75496645	Msa0044010:CDS	55.0%
	ACCCAAAGTTGAGAGGGCTG+TGG	+	chr1_1:75495320-75495339	Msa0044010:CDS	55.0%
	GGTTTGCGGCAACTGTCAGA+CGG	+	chr1_1:75496562-75496581	Msa0044010:CDS	55.0%
	ACGGTATTGTGCCAGCCAAC+CGG	+	chr1_1:75496581-75496600	Msa0044010:CDS	55.0%
!!	TGTTAGCCTTGCTTTGCCGC+CGG	-	chr1_1:75496603-75496622	None:intergenic	55.0%
	CGGCAAAGCAAGGCTAACAG+AGG	+	chr1_1:75496604-75496623	Msa0044010:CDS	55.0%
!!	TAACAGAGGGGTGCTCCTTC+AGG	+	chr1_1:75496618-75496637	Msa0044010:CDS	55.0%
	GGGTGCTCCTTCAGGAAGAA+GGG	+	chr1_1:75496626-75496645	Msa0044010:CDS	55.0%
	GTATTGTGCCAGCCAACCGG+CGG	+	chr1_1:75496584-75496603	Msa0044010:CDS	60.0%
!	GGGGTGCTCCTTCAGGAAGA+AGG	+	chr1_1:75496625-75496644	Msa0044010:CDS	60.0%
	GTATTGTGCCAGCCAACCGG+CGG	+	chr1_1:75496584-75496603	Msa0044010:CDS	60.0%
!	GGGGTGCTCCTTCAGGAAGA+AGG	+	chr1_1:75496625-75496644	Msa0044010:CDS	60.0%
	AAGGGGCTGCGACTGCGAGA+AGG	-	chr1_1:75495478-75495497	None:intergenic	65.0%
!	TTGCTTTGCCGCCGGTTGGC+TGG	-	chr1_1:75496595-75496614	None:intergenic	65.0%
	AGCCAACCGGCGGCAAAGCA+AGG	+	chr1_1:75496594-75496613	Msa0044010:CDS	65.0%
	AGCCTTGCTTTGCCGCCGGT+TGG	-	chr1_1:75496599-75496618	None:intergenic	65.0%
	AAGGGGCTGCGACTGCGAGA+AGG	-	chr1_1:75495478-75495497	None:intergenic	65.0%
!	TTGCTTTGCCGCCGGTTGGC+TGG	-	chr1_1:75496595-75496614	None:intergenic	65.0%
	AGCCAACCGGCGGCAAAGCA+AGG	+	chr1_1:75496594-75496613	Msa0044010:CDS	65.0%
	AGCCTTGCTTTGCCGCCGGT+TGG	-	chr1_1:75496599-75496618	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	75495315	75497033	75495315	ID=Msa0044010;Name=Msa0044010
chr1_1	mRNA	75495315	75497033	75495315	ID=Msa0044010-mRNA-1;Parent=Msa0044010;Name=Msa0044010-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0\|0.75\|0.8\|0.8\|0.75\|0.6\|5\|342\|99
chr1_1	exon	75495315	75495356	75495315	ID=Msa0044010-mRNA-1:exon:25484;Parent=Msa0044010-mRNA-1
chr1_1	exon	75495651	75495752	75495651	ID=Msa0044010-mRNA-1:exon:25485;Parent=Msa0044010-mRNA-1
chr1_1	exon	75495860	75495888	75495860	ID=Msa0044010-mRNA-1:exon:25486;Parent=Msa0044010-mRNA-1
chr1_1	exon	75496529	75496870	75496529	ID=Msa0044010-mRNA-1:exon:25487;Parent=Msa0044010-mRNA-1
chr1_1	exon	75496907	75497033	75496907	ID=Msa0044010-mRNA-1:exon:25488;Parent=Msa0044010-mRNA-1
chr1_1	CDS	75495315	75495356	75495315	ID=Msa0044010-mRNA-1:cds;Parent=Msa0044010-mRNA-1
chr1_1	CDS	75495651	75495752	75495651	ID=Msa0044010-mRNA-1:cds;Parent=Msa0044010-mRNA-1
chr1_1	CDS	75495860	75495888	75495860	ID=Msa0044010-mRNA-1:cds;Parent=Msa0044010-mRNA-1
chr1_1	CDS	75496529	75496655	75496529	ID=Msa0044010-mRNA-1:cds;Parent=Msa0044010-mRNA-1
chr1_1	three_prime_UTR	75496656	75496870	75496656	ID=Msa0044010-mRNA-1:three_prime_utr;Parent=Msa0044010-mRNA-1
chr1_1	three_prime_UTR	75496907	75497033	75496907	ID=Msa0044010-mRNA-1:three_prime_utr;Parent=Msa0044010-mRNA-1

Gene Sequence	>Msa0044010 ATGGGACCCAAAGTTGAGAGGGCTGTGGAATCAAATGTGGAGGTTCTCCAAAACGACATCGATCTCTTGAACCCACCAGCAGAGCTTGAGAAAAGGAAGCACAAGCTCAAGCGTCTCGTTCAATCTCCTAACTCATTCTTCATGGATGTCAAATGCCAAGGATGCTTCAACATAACTACTGTATTTAGCCACTCTCAAACAGTCGTGGTTTGCGGCAACTGTCAGACGGTATTGTGCCAGCCAACCGGCGGCAAAGCAAGGCTAACAGAGGGGTGCTCCTTCAGGAAGAAGGGTGATTAG
Protein sequence	>Msa0044010 MGPKVERAVESNVEVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD*