Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096800 | XP_013446985.1 | 93.455 | 275 | 17 | 1 | 48 | 322 | 48 | 321 | 1.07e-141 | 413 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096800 | sp|Q9C5D3|HIP7_ARATH | 58.451 | 284 | 103 | 4 | 52 | 322 | 74 | 355 | 4.02e-76 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096800 | A0A072TUA8 | 93.455 | 275 | 17 | 1 | 48 | 322 | 48 | 321 | 5.12e-142 | 413 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa0096800 | 0.813673 | 2.271854e-51 | -8.615850e-47 |
| Msa0046740 | Msa0096800 | 0.802299 | 5.992742e-49 | -8.615850e-47 |
| Msa0076040 | Msa0096800 | 0.847440 | 1.154652e-59 | -8.615850e-47 |
| Msa0096800 | Msa0134610 | 0.800041 | 1.735555e-48 | -8.615850e-47 |
| Msa0096800 | Msa0181610 | 0.831847 | 1.323606e-55 | -8.615850e-47 |
| Msa0096800 | Msa0223080 | 0.812668 | 3.775722e-51 | -8.615850e-47 |
| Msa0096800 | Msa0302160 | 0.816417 | 5.589484e-52 | -8.615850e-47 |
| Msa0096800 | Msa0339490 | 0.818682 | 1.725362e-52 | -8.615850e-47 |
| Msa0096800 | Msa0477460 | 0.821499 | 3.909131e-53 | -8.615850e-47 |
| Msa0096800 | Msa0524500 | 0.803620 | 3.195272e-49 | -8.615850e-47 |
| Msa0096800 | Msa0571110 | 0.817161 | 3.806907e-52 | -8.615850e-47 |
| Msa0096800 | Msa0580280 | 0.807558 | 4.765706e-50 | -8.615850e-47 |
| Msa0096800 | Msa0620200 | 0.971103 | 1.222250e-132 | -8.615850e-47 |
| Msa0096800 | Msa0880450 | 0.801175 | 1.019165e-48 | -8.615850e-47 |
| Msa0096800 | Msa0880470 | 0.973180 | 5.406047e-136 | -8.615850e-47 |
| Msa0096800 | Msa1174530 | 0.800549 | 1.368041e-48 | -8.615850e-47 |
| Msa0096800 | Msa1235250 | 0.806001 | 1.016570e-49 | -8.615850e-47 |
| Msa0096800 | Msa1251160 | 0.821678 | 3.553139e-53 | -8.615850e-47 |
| Msa0096800 | Msa1413260 | 0.818617 | 1.785436e-52 | -8.615850e-47 |
| Msa0096800 | Msa1425670 | 0.804351 | 2.252186e-49 | -8.615850e-47 |
| Msa0096800 | Msa1446820 | 0.818942 | 1.506388e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096800 | MtrunA17_Chr8g0386231 | 93.455 | 275 | 17 | 1 | 48 | 322 | 48 | 321 | 9.85e-146 | 413 |
| Msa0096800 | MtrunA17_Chr3g0132051 | 53.506 | 271 | 87 | 6 | 52 | 322 | 35 | 266 | 1.27e-79 | 243 |
| Msa0096800 | MtrunA17_Chr3g0132061 | 51.389 | 288 | 103 | 4 | 52 | 322 | 35 | 302 | 2.08e-76 | 236 |
| Msa0096800 | MtrunA17_Chr2g0290471 | 49.084 | 273 | 103 | 6 | 50 | 322 | 33 | 269 | 3.99e-53 | 175 |
| Msa0096800 | MtrunA17_Chr4g0001151 | 68.000 | 125 | 37 | 1 | 52 | 176 | 169 | 290 | 5.68e-48 | 163 |
| Msa0096800 | MtrunA17_Chr3g0094841 | 35.531 | 273 | 110 | 6 | 53 | 322 | 28 | 237 | 2.20e-41 | 144 |
| Msa0096800 | MtrunA17_Chr3g0128091 | 35.577 | 312 | 158 | 11 | 19 | 321 | 6 | 283 | 3.81e-33 | 124 |
| Msa0096800 | MtrunA17_Chr4g0028461 | 30.686 | 277 | 163 | 5 | 54 | 322 | 69 | 324 | 1.44e-30 | 117 |
| Msa0096800 | MtrunA17_Chr1g0180631 | 33.529 | 340 | 174 | 9 | 26 | 322 | 3 | 333 | 8.79e-29 | 113 |
| Msa0096800 | MtrunA17_Chr5g0429111 | 36.810 | 163 | 91 | 2 | 54 | 216 | 56 | 206 | 1.33e-28 | 112 |
| Msa0096800 | MtrunA17_Chr8g0337951 | 34.386 | 285 | 149 | 11 | 37 | 321 | 18 | 264 | 1.12e-27 | 108 |
| Msa0096800 | MtrunA17_Chr2g0327311 | 33.526 | 173 | 105 | 4 | 50 | 216 | 64 | 232 | 6.78e-24 | 100 |
| Msa0096800 | MtrunA17_Chr7g0264601 | 33.803 | 213 | 109 | 4 | 43 | 232 | 5 | 208 | 7.08e-22 | 94.4 |
| Msa0096800 | MtrunA17_Chr8g0343041 | 50.000 | 62 | 31 | 0 | 155 | 216 | 77 | 138 | 2.28e-14 | 72.4 |
| Msa0096800 | MtrunA17_Chr6g0454851 | 50.746 | 67 | 32 | 1 | 50 | 116 | 17 | 82 | 2.19e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096800 | AT5G50740.5 | 50.323 | 310 | 127 | 5 | 13 | 322 | 1 | 283 | 1.59e-82 | 251 |
| Msa0096800 | AT5G50740.1 | 50.323 | 310 | 127 | 5 | 13 | 322 | 1 | 283 | 1.59e-82 | 251 |
| Msa0096800 | AT5G63530.2 | 58.451 | 284 | 103 | 4 | 52 | 322 | 59 | 340 | 2.02e-77 | 240 |
| Msa0096800 | AT5G50740.3 | 49.689 | 322 | 130 | 5 | 1 | 322 | 1 | 290 | 2.24e-77 | 238 |
| Msa0096800 | AT5G63530.1 | 58.451 | 284 | 103 | 4 | 52 | 322 | 74 | 355 | 4.09e-77 | 240 |
| Msa0096800 | AT3G02960.1 | 39.114 | 271 | 104 | 6 | 52 | 322 | 37 | 246 | 3.43e-50 | 167 |
| Msa0096800 | AT5G50740.2 | 55.758 | 165 | 58 | 2 | 13 | 177 | 1 | 150 | 4.99e-45 | 151 |
| Msa0096800 | AT5G50740.4 | 51.412 | 177 | 66 | 3 | 1 | 177 | 1 | 157 | 6.39e-40 | 138 |
| Msa0096800 | AT5G24580.4 | 32.979 | 282 | 155 | 6 | 53 | 321 | 58 | 318 | 5.06e-32 | 122 |
| Msa0096800 | AT5G24580.1 | 32.979 | 282 | 155 | 6 | 53 | 321 | 58 | 318 | 5.06e-32 | 122 |
| Msa0096800 | AT5G24580.2 | 32.979 | 282 | 155 | 6 | 53 | 321 | 57 | 317 | 5.17e-32 | 122 |
| Msa0096800 | AT5G03380.1 | 35.926 | 270 | 134 | 8 | 26 | 264 | 3 | 264 | 1.16e-28 | 114 |
| Msa0096800 | AT5G24580.3 | 31.915 | 282 | 155 | 7 | 53 | 321 | 58 | 315 | 1.27e-28 | 112 |
| Msa0096800 | AT2G36950.1 | 31.751 | 337 | 161 | 9 | 53 | 322 | 52 | 386 | 1.63e-28 | 114 |
| Msa0096800 | AT5G03380.2 | 35.270 | 241 | 121 | 6 | 55 | 264 | 1 | 237 | 7.10e-26 | 106 |
| Msa0096800 | AT5G60800.1 | 35.252 | 278 | 150 | 6 | 53 | 322 | 28 | 283 | 6.59e-23 | 96.7 |
| Msa0096800 | AT5G60800.2 | 34.892 | 278 | 151 | 6 | 53 | 322 | 28 | 283 | 8.71e-22 | 94.0 |
| Msa0096800 | AT5G24580.5 | 31.076 | 251 | 139 | 6 | 84 | 321 | 2 | 231 | 9.14e-21 | 89.7 |
| Msa0096800 | AT1G29000.1 | 33.333 | 165 | 104 | 3 | 54 | 216 | 18 | 178 | 2.19e-19 | 87.0 |
| Msa0096800 | AT1G29000.2 | 33.333 | 165 | 104 | 3 | 54 | 216 | 18 | 178 | 2.19e-19 | 87.0 |
| Msa0096800 | AT2G28090.1 | 29.907 | 214 | 136 | 3 | 36 | 247 | 14 | 215 | 1.67e-16 | 78.2 |
Find 65 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGACTTTAAGCACAATTTC+TGG | 0.185344 | 1_3:-2512484 | None:intergenic |
| TCTTGTTCTGAAGGTGGTTT+AGG | 0.196858 | 1_3:-2512775 | None:intergenic |
| TCTCACAAGGTTGTTGTTAA+AGG | 0.201668 | 1_3:+2512673 | Msa0096800:CDS |
| TCTTCGTCTTTGGTTTCTTT+TGG | 0.203283 | 1_3:-2513490 | None:intergenic |
| GGTAATGATAAGGGTAATAT+TGG | 0.277814 | 1_3:+2513790 | Msa0096800:three_prime_UTR |
| TAAGGGTAATATTGGAATTA+TGG | 0.284369 | 1_3:+2513798 | Msa0096800:three_prime_UTR |
| CTTGTTCTGAAGGTGGTTTA+GGG | 0.292396 | 1_3:-2512774 | None:intergenic |
| TCCTCTACTTTCGTTTCCTC+TGG | 0.374047 | 1_3:-2512355 | None:intergenic |
| AGGTGGTGCAGAAGAAGTTA+AGG | 0.374215 | 1_3:+2513627 | Msa0096800:CDS |
| ATGATAATGATAATGAAATC+TGG | 0.375338 | 1_3:+2513840 | Msa0096800:three_prime_UTR |
| AGCTGCAGCTGCAGCTGCAG+AGG | 0.381633 | 1_3:+2513576 | Msa0096800:CDS |
| GGCACATCTTACCCAGGATA+TGG | 0.400133 | 1_3:-2513870 | None:intergenic |
| TACATGATAGAACAAGCATT+TGG | 0.401152 | 1_3:-2513760 | None:intergenic |
| TCTTTCTTCGGTGGTTCCTC+TGG | 0.408707 | 1_3:-2512385 | None:intergenic |
| ACTCTTTCAAGAACCTTCAA+TGG | 0.419505 | 1_3:-2512709 | None:intergenic |
| GCTGCAGCTGCAGCTGCAGA+GGG | 0.436837 | 1_3:+2513577 | Msa0096800:CDS |
| GAATATGTTTACAAGAGAAC+TGG | 0.441360 | 1_3:+2513421 | Msa0096800:CDS |
| GATCAGAAAGGGAGTGGTGA+AGG | 0.441866 | 1_3:+2513538 | Msa0096800:CDS |
| AGGAGTTGAATCAGCTGAAC+CGG | 0.452591 | 1_3:+2513342 | Msa0096800:intron |
| TCTGGGTGAAAGCCATATCC+TGG | 0.459053 | 1_3:+2513858 | Msa0096800:three_prime_UTR |
| GAGAGAGAGATATAGAAGCT+AGG | 0.466451 | 1_3:-2512147 | None:intergenic |
| AAAATTTGAGGAGGGTAAGC+TGG | 0.466832 | 1_3:-2513724 | None:intergenic |
| GTAACTTCCTTAGATTCCTC+CGG | 0.468732 | 1_3:-2512457 | None:intergenic |
| AAAGTTCGTCGTTCACTCAA+AGG | 0.473903 | 1_3:+2512532 | Msa0096800:CDS |
| GAGAGATATAGAAGCTAGGT+TGG | 0.475786 | 1_3:-2512143 | None:intergenic |
| ACTAGTGAGTTCTTCAGATC+CGG | 0.476586 | 1_3:-2513361 | None:intergenic |
| CCACCTCCTCCATCACCACT+TGG | 0.479378 | 1_3:-2513610 | None:intergenic |
| GAAAGGGAGTGGTGAAGGAG+AGG | 0.503599 | 1_3:+2513543 | Msa0096800:CDS |
| GAAAGAGAAACCTAAGCCAC+AGG | 0.507799 | 1_3:+2512813 | Msa0096800:CDS |
| GATGGAAAACCAAGTGGTGA+TGG | 0.509668 | 1_3:+2513601 | Msa0096800:CDS |
| TGCAGAAGAAGTTAAGGTGG+TGG | 0.510388 | 1_3:+2513633 | Msa0096800:CDS |
| GTCAGTCACACTAAACCAAT+GGG | 0.518992 | 1_3:+2512204 | Msa0096800:exon |
| TCTGAAGGTGGTTTAGGGAT+CGG | 0.522573 | 1_3:-2512769 | None:intergenic |
| GCTGCAGCTGCAGAGGGAGA+TGG | 0.525345 | 1_3:+2513583 | Msa0096800:CDS |
| TGATAATGATAATGAAATCT+GGG | 0.533220 | 1_3:+2513841 | Msa0096800:three_prime_UTR |
| GGAAGAAAAGAAAGCTGAAG+AGG | 0.548605 | 1_3:+2512834 | Msa0096800:CDS |
| AACTCACTAGTGACAGTGAA+AGG | 0.549081 | 1_3:+2513373 | Msa0096800:CDS |
| AGAGAACCAACCTCTCCCAT+TGG | 0.550262 | 1_3:-2512219 | None:intergenic |
| AAAGTCTTCATGCATTGTGA+AGG | 0.559957 | 1_3:+2512499 | Msa0096800:CDS |
| TAAAACTCCGTACCATACCT+TGG | 0.562455 | 1_3:-2513688 | None:intergenic |
| AGAATCACTATCATAACCTT+AGG | 0.564388 | 1_3:-2512946 | None:intergenic |
| TAATCCACCAAGGTATGGTA+CGG | 0.565997 | 1_3:+2513681 | Msa0096800:CDS |
| CATCACTGAAAATTTGAGGA+GGG | 0.566558 | 1_3:-2513732 | None:intergenic |
| TGGTGCAGAAGAAGTTAAGG+TGG | 0.570601 | 1_3:+2513630 | Msa0096800:CDS |
| AGTGTGACTGACTGACTCAA+AGG | 0.570706 | 1_3:-2512193 | None:intergenic |
| AGTCAGTCACACTAAACCAA+TGG | 0.572674 | 1_3:+2512203 | Msa0096800:exon |
| CCAAGTGGTGATGGAGGAGG+TGG | 0.579532 | 1_3:+2513610 | Msa0096800:CDS |
| AAACCAAGTGGTGATGGAGG+AGG | 0.582262 | 1_3:+2513607 | Msa0096800:CDS |
| AACTCCGTACCATACCTTGG+TGG | 0.588756 | 1_3:-2513685 | None:intergenic |
| AGACGCATTGAGAAAATCAA+AGG | 0.589980 | 1_3:+2513012 | Msa0096800:CDS |
| TGAGGAGGGTAAGCTGGACC+AGG | 0.590722 | 1_3:-2513718 | None:intergenic |
| TACTGCAGGGAAAAGTACAT+AGG | 0.593196 | 1_3:-2513892 | None:intergenic |
| GGAAAACCAAGTGGTGATGG+AGG | 0.597768 | 1_3:+2513604 | Msa0096800:CDS |
| ACTGCAGGGAAAAGTACATA+GGG | 0.600268 | 1_3:-2513891 | None:intergenic |
| ACCAGAGGAAACGAAAGTAG+AGG | 0.601453 | 1_3:+2512354 | Msa0096800:CDS |
| CTGGGTGAAAGCCATATCCT+GGG | 0.602074 | 1_3:+2513859 | Msa0096800:three_prime_UTR |
| TACTGATTGCAAATCTCACA+AGG | 0.619184 | 1_3:+2512660 | Msa0096800:CDS |
| TCATCACTGAAAATTTGAGG+AGG | 0.625780 | 1_3:-2513733 | None:intergenic |
| TCACACTAAACCAATGGGAG+AGG | 0.633440 | 1_3:+2512209 | Msa0096800:exon |
| AGGTTCTTGAAAGAGTTCAG+AGG | 0.645167 | 1_3:+2512716 | Msa0096800:CDS |
| TAGAAGCTAGGTTGGTTCTG+CGG | 0.646213 | 1_3:-2512135 | None:intergenic |
| ACTTTAAGCACAATTTCTGG+CGG | 0.689016 | 1_3:-2512481 | None:intergenic |
| ACATAGGGCACATCTTACCC+AGG | 0.692217 | 1_3:-2513876 | None:intergenic |
| ATAGGAAGAAAAGAAACCAG+AGG | 0.703898 | 1_3:+2512339 | Msa0096800:intron |
| GAGGGAGATGGAAAACCAAG+TGG | 0.706478 | 1_3:+2513595 | Msa0096800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTAATAATATTGTTTC+TGG | + | chr1_3:2512291-2512310 | Msa0096800:intron | 15.0% |
| !!! | TTACTTTTATTTCATTTACT+TGG | + | chr1_3:2513079-2513098 | Msa0096800:intron | 15.0% |
| !!! | TAAAAATTTGGTAATGATAA+GGG | + | chr1_3:2513781-2513800 | Msa0096800:exon | 15.0% |
| !!! | CATTTTAATAATATTGTTTC+TGG | + | chr1_3:2512291-2512310 | Msa0096800:intron | 15.0% |
| !!! | TTACTTTTATTTCATTTACT+TGG | + | chr1_3:2513079-2513098 | Msa0096800:intron | 15.0% |
| !!! | TAAAAATTTGGTAATGATAA+GGG | + | chr1_3:2513781-2513800 | Msa0096800:exon | 15.0% |
| !!! | TTAAAAACACCGAAATTTTA+AGG | + | chr1_3:2512100-2512119 | Msa0096800:five_prime_UTR | 20.0% |
| !!! | CTTTTTTTGCCTTAAAATTT+CGG | - | chr1_3:2512112-2512131 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTTGTTTTGAAT+AGG | + | chr1_3:2512321-2512340 | Msa0096800:intron | 20.0% |
| !!! | AGAAAAAAAGTGTAAAGAAA+AGG | - | chr1_3:2512579-2512598 | None:intergenic | 20.0% |
| !! | TTTATTTCATTTACTTGGTT+TGG | + | chr1_3:2513084-2513103 | Msa0096800:intron | 20.0% |
| !! | CTTGATAAAATATTTGTAAG+TGG | + | chr1_3:2513253-2513272 | Msa0096800:intron | 20.0% |
| !! | TTAAAATTATATTCACATGC+AGG | + | chr1_3:2513322-2513341 | Msa0096800:intron | 20.0% |
| !!! | AATATTATTTTAATCCACCA+AGG | + | chr1_3:2513671-2513690 | Msa0096800:CDS | 20.0% |
| !! | TGTTCTATCATGTAAAAATT+TGG | + | chr1_3:2513769-2513788 | Msa0096800:exon | 20.0% |
| !!! | GTAAAAATTTGGTAATGATA+AGG | + | chr1_3:2513780-2513799 | Msa0096800:exon | 20.0% |
| !!! | ATGATAATGATAATGAAATC+TGG | + | chr1_3:2513840-2513859 | Msa0096800:three_prime_UTR | 20.0% |
| !!! | TGATAATGATAATGAAATCT+GGG | + | chr1_3:2513841-2513860 | Msa0096800:three_prime_UTR | 20.0% |
| !!! | TTAAAAACACCGAAATTTTA+AGG | + | chr1_3:2512100-2512119 | Msa0096800:five_prime_UTR | 20.0% |
| !!! | CTTTTTTTGCCTTAAAATTT+CGG | - | chr1_3:2512112-2512131 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTTGTTTTGAAT+AGG | + | chr1_3:2512321-2512340 | Msa0096800:intron | 20.0% |
| !!! | AGAAAAAAAGTGTAAAGAAA+AGG | - | chr1_3:2512579-2512598 | None:intergenic | 20.0% |
| !! | TTTATTTCATTTACTTGGTT+TGG | + | chr1_3:2513084-2513103 | Msa0096800:intron | 20.0% |
| !! | CTTGATAAAATATTTGTAAG+TGG | + | chr1_3:2513253-2513272 | Msa0096800:intron | 20.0% |
| !! | TTAAAATTATATTCACATGC+AGG | + | chr1_3:2513322-2513341 | Msa0096800:intron | 20.0% |
| !!! | AATATTATTTTAATCCACCA+AGG | + | chr1_3:2513671-2513690 | Msa0096800:CDS | 20.0% |
| !! | TGTTCTATCATGTAAAAATT+TGG | + | chr1_3:2513769-2513788 | Msa0096800:exon | 20.0% |
| !!! | GTAAAAATTTGGTAATGATA+AGG | + | chr1_3:2513780-2513799 | Msa0096800:exon | 20.0% |
| !!! | ATGATAATGATAATGAAATC+TGG | + | chr1_3:2513840-2513859 | Msa0096800:three_prime_UTR | 20.0% |
| !!! | TGATAATGATAATGAAATCT+GGG | + | chr1_3:2513841-2513860 | Msa0096800:three_prime_UTR | 20.0% |
| !! | TTCTTCTTTTCTTCTTTCTT+CGG | - | chr1_3:2512400-2512419 | None:intergenic | 25.0% |
| !! | TAATGATTAGTTGTTTGTGA+TGG | + | chr1_3:2512612-2512631 | Msa0096800:intron | 25.0% |
| !!! | ATTTTTTTCTCTTGTTCTGA+AGG | - | chr1_3:2512787-2512806 | None:intergenic | 25.0% |
| !! | AAATTTTTCTGAATCTGTGA+TGG | + | chr1_3:2512887-2512906 | Msa0096800:intron | 25.0% |
| !! | TTTTCATCACTGAAAATTTG+AGG | - | chr1_3:2513739-2513758 | None:intergenic | 25.0% |
| ! | TAAGGGTAATATTGGAATTA+TGG | + | chr1_3:2513798-2513817 | Msa0096800:three_prime_UTR | 25.0% |
| !! | TTCTTCTTTTCTTCTTTCTT+CGG | - | chr1_3:2512400-2512419 | None:intergenic | 25.0% |
| !! | TAATGATTAGTTGTTTGTGA+TGG | + | chr1_3:2512612-2512631 | Msa0096800:intron | 25.0% |
| !!! | ATTTTTTTCTCTTGTTCTGA+AGG | - | chr1_3:2512787-2512806 | None:intergenic | 25.0% |
| !! | AAATTTTTCTGAATCTGTGA+TGG | + | chr1_3:2512887-2512906 | Msa0096800:intron | 25.0% |
| !! | TTTTCATCACTGAAAATTTG+AGG | - | chr1_3:2513739-2513758 | None:intergenic | 25.0% |
| ! | TAAGGGTAATATTGGAATTA+TGG | + | chr1_3:2513798-2513817 | Msa0096800:three_prime_UTR | 25.0% |
| AAGACTTTAAGCACAATTTC+TGG | - | chr1_3:2512487-2512506 | None:intergenic | 30.0% | |
| !!! | TTGTTTGTGATGGATTTTTC+AGG | + | chr1_3:2512622-2512641 | Msa0096800:intron | 30.0% |
| !!! | TGTTTGTGATGGATTTTTCA+GGG | + | chr1_3:2512623-2512642 | Msa0096800:intron | 30.0% |
| TGTTGTTAAAGGAGAAAAAG+CGG | + | chr1_3:2512684-2512703 | Msa0096800:CDS | 30.0% | |
| AGAATCACTATCATAACCTT+AGG | - | chr1_3:2512949-2512968 | None:intergenic | 30.0% | |
| AAATCTGACAAATTCCTGAA+AGG | - | chr1_3:2513129-2513148 | None:intergenic | 30.0% | |
| GAATATGTTTACAAGAGAAC+TGG | + | chr1_3:2513421-2513440 | Msa0096800:CDS | 30.0% | |
| !!! | TTTGGATGTTCTTTTTTCTC+TGG | - | chr1_3:2513475-2513494 | None:intergenic | 30.0% |
| !!! | AGTTTTTTTCTCTTCGTCTT+TGG | - | chr1_3:2513503-2513522 | None:intergenic | 30.0% |
| AAGGTGAAAAAGATCAGAAA+GGG | + | chr1_3:2513527-2513546 | Msa0096800:CDS | 30.0% | |
| !!! | TATTTTAATCCACCAAGGTA+TGG | + | chr1_3:2513676-2513695 | Msa0096800:CDS | 30.0% |
| TACATGATAGAACAAGCATT+TGG | - | chr1_3:2513763-2513782 | None:intergenic | 30.0% | |
| GGTAATGATAAGGGTAATAT+TGG | + | chr1_3:2513790-2513809 | Msa0096800:three_prime_UTR | 30.0% | |
| !!! | ATTACACTTTTTCTACTGCA+GGG | - | chr1_3:2513908-2513927 | None:intergenic | 30.0% |
| AAGACTTTAAGCACAATTTC+TGG | - | chr1_3:2512487-2512506 | None:intergenic | 30.0% | |
| !!! | TTGTTTGTGATGGATTTTTC+AGG | + | chr1_3:2512622-2512641 | Msa0096800:intron | 30.0% |
| !!! | TGTTTGTGATGGATTTTTCA+GGG | + | chr1_3:2512623-2512642 | Msa0096800:intron | 30.0% |
| TGTTGTTAAAGGAGAAAAAG+CGG | + | chr1_3:2512684-2512703 | Msa0096800:CDS | 30.0% | |
| AGAATCACTATCATAACCTT+AGG | - | chr1_3:2512949-2512968 | None:intergenic | 30.0% | |
| AAATCTGACAAATTCCTGAA+AGG | - | chr1_3:2513129-2513148 | None:intergenic | 30.0% | |
| GAATATGTTTACAAGAGAAC+TGG | + | chr1_3:2513421-2513440 | Msa0096800:CDS | 30.0% | |
| !!! | TTTGGATGTTCTTTTTTCTC+TGG | - | chr1_3:2513475-2513494 | None:intergenic | 30.0% |
| !!! | AGTTTTTTTCTCTTCGTCTT+TGG | - | chr1_3:2513503-2513522 | None:intergenic | 30.0% |
| AAGGTGAAAAAGATCAGAAA+GGG | + | chr1_3:2513527-2513546 | Msa0096800:CDS | 30.0% | |
| !!! | TATTTTAATCCACCAAGGTA+TGG | + | chr1_3:2513676-2513695 | Msa0096800:CDS | 30.0% |
| TACATGATAGAACAAGCATT+TGG | - | chr1_3:2513763-2513782 | None:intergenic | 30.0% | |
| GGTAATGATAAGGGTAATAT+TGG | + | chr1_3:2513790-2513809 | Msa0096800:three_prime_UTR | 30.0% | |
| !!! | ATTACACTTTTTCTACTGCA+GGG | - | chr1_3:2513908-2513927 | None:intergenic | 30.0% |
| ATAGGAAGAAAAGAAACCAG+AGG | + | chr1_3:2512339-2512358 | Msa0096800:intron | 35.0% | |
| ! | TTCTTTTCTTCTTTCTTCGG+TGG | - | chr1_3:2512397-2512416 | None:intergenic | 35.0% |
| !!! | GGTTTTTTCTCTTCTTCTGT+CGG | - | chr1_3:2512439-2512458 | None:intergenic | 35.0% |
| GACAGAAGAAGAGAAAAAAC+CGG | + | chr1_3:2512438-2512457 | Msa0096800:CDS | 35.0% | |
| ! | ACTTTAAGCACAATTTCTGG+CGG | - | chr1_3:2512484-2512503 | None:intergenic | 35.0% |
| AAAGTCTTCATGCATTGTGA+AGG | + | chr1_3:2512499-2512518 | Msa0096800:CDS | 35.0% | |
| !!! | GTTTGTGATGGATTTTTCAG+GGG | + | chr1_3:2512624-2512643 | Msa0096800:intron | 35.0% |
| ! | TACTGATTGCAAATCTCACA+AGG | + | chr1_3:2512660-2512679 | Msa0096800:CDS | 35.0% |
| ! | TCTCACAAGGTTGTTGTTAA+AGG | + | chr1_3:2512673-2512692 | Msa0096800:CDS | 35.0% |
| ACTCTTTCAAGAACCTTCAA+TGG | - | chr1_3:2512712-2512731 | None:intergenic | 35.0% | |
| !!! | TTTTTCTCTTGTTCTGAAGG+TGG | - | chr1_3:2512784-2512803 | None:intergenic | 35.0% |
| TTATTATATGGTGCAGCCTA+AGG | + | chr1_3:2512930-2512949 | Msa0096800:intron | 35.0% | |
| AGACGCATTGAGAAAATCAA+AGG | + | chr1_3:2513012-2513031 | Msa0096800:CDS | 35.0% | |
| TGACAAATTCCTGAAAGGAT+GGG | - | chr1_3:2513124-2513143 | None:intergenic | 35.0% | |
| !! | TCTTCGTCTTTGGTTTCTTT+TGG | - | chr1_3:2513493-2513512 | None:intergenic | 35.0% |
| AGACGAAGAGAAAAAAACTG+AGG | + | chr1_3:2513504-2513523 | Msa0096800:CDS | 35.0% | |
| GAAGAGAAAAAAACTGAGGA+AGG | + | chr1_3:2513508-2513527 | Msa0096800:CDS | 35.0% | |
| GAAGGTGAAAAAGATCAGAA+AGG | + | chr1_3:2513526-2513545 | Msa0096800:CDS | 35.0% | |
| CATCACTGAAAATTTGAGGA+GGG | - | chr1_3:2513735-2513754 | None:intergenic | 35.0% | |
| TCATCACTGAAAATTTGAGG+AGG | - | chr1_3:2513736-2513755 | None:intergenic | 35.0% | |
| !!! | GATTACACTTTTTCTACTGC+AGG | - | chr1_3:2513909-2513928 | None:intergenic | 35.0% |
| ATAGGAAGAAAAGAAACCAG+AGG | + | chr1_3:2512339-2512358 | Msa0096800:intron | 35.0% | |
| ! | TTCTTTTCTTCTTTCTTCGG+TGG | - | chr1_3:2512397-2512416 | None:intergenic | 35.0% |
| !!! | GGTTTTTTCTCTTCTTCTGT+CGG | - | chr1_3:2512439-2512458 | None:intergenic | 35.0% |
| GACAGAAGAAGAGAAAAAAC+CGG | + | chr1_3:2512438-2512457 | Msa0096800:CDS | 35.0% | |
| ! | ACTTTAAGCACAATTTCTGG+CGG | - | chr1_3:2512484-2512503 | None:intergenic | 35.0% |
| AAAGTCTTCATGCATTGTGA+AGG | + | chr1_3:2512499-2512518 | Msa0096800:CDS | 35.0% | |
| !!! | GTTTGTGATGGATTTTTCAG+GGG | + | chr1_3:2512624-2512643 | Msa0096800:intron | 35.0% |
| ! | TACTGATTGCAAATCTCACA+AGG | + | chr1_3:2512660-2512679 | Msa0096800:CDS | 35.0% |
| ! | TCTCACAAGGTTGTTGTTAA+AGG | + | chr1_3:2512673-2512692 | Msa0096800:CDS | 35.0% |
| ACTCTTTCAAGAACCTTCAA+TGG | - | chr1_3:2512712-2512731 | None:intergenic | 35.0% | |
| !!! | TTTTTCTCTTGTTCTGAAGG+TGG | - | chr1_3:2512784-2512803 | None:intergenic | 35.0% |
| TTATTATATGGTGCAGCCTA+AGG | + | chr1_3:2512930-2512949 | Msa0096800:intron | 35.0% | |
| AGACGCATTGAGAAAATCAA+AGG | + | chr1_3:2513012-2513031 | Msa0096800:CDS | 35.0% | |
| TGACAAATTCCTGAAAGGAT+GGG | - | chr1_3:2513124-2513143 | None:intergenic | 35.0% | |
| !! | TCTTCGTCTTTGGTTTCTTT+TGG | - | chr1_3:2513493-2513512 | None:intergenic | 35.0% |
| AGACGAAGAGAAAAAAACTG+AGG | + | chr1_3:2513504-2513523 | Msa0096800:CDS | 35.0% | |
| GAAGAGAAAAAAACTGAGGA+AGG | + | chr1_3:2513508-2513527 | Msa0096800:CDS | 35.0% | |
| GAAGGTGAAAAAGATCAGAA+AGG | + | chr1_3:2513526-2513545 | Msa0096800:CDS | 35.0% | |
| CATCACTGAAAATTTGAGGA+GGG | - | chr1_3:2513735-2513754 | None:intergenic | 35.0% | |
| TCATCACTGAAAATTTGAGG+AGG | - | chr1_3:2513736-2513755 | None:intergenic | 35.0% | |
| !!! | GATTACACTTTTTCTACTGC+AGG | - | chr1_3:2513909-2513928 | None:intergenic | 35.0% |
| GAGAGATATAGAAGCTAGGT+TGG | - | chr1_3:2512146-2512165 | None:intergenic | 40.0% | |
| GAGAGAGAGATATAGAAGCT+AGG | - | chr1_3:2512150-2512169 | None:intergenic | 40.0% | |
| AGTCAGTCACACTAAACCAA+TGG | + | chr1_3:2512203-2512222 | Msa0096800:exon | 40.0% | |
| GTCAGTCACACTAAACCAAT+GGG | + | chr1_3:2512204-2512223 | Msa0096800:exon | 40.0% | |
| AGTAGAGGAGAAAAAACCAG+AGG | + | chr1_3:2512369-2512388 | Msa0096800:CDS | 40.0% | |
| ! | TTTTTCTCTTCTTCTGTCGG+TGG | - | chr1_3:2512436-2512455 | None:intergenic | 40.0% |
| AGAAGAAGAGAAAAAACCGG+AGG | + | chr1_3:2512441-2512460 | Msa0096800:CDS | 40.0% | |
| GAAAAAACCGGAGGAATCTA+AGG | + | chr1_3:2512450-2512469 | Msa0096800:CDS | 40.0% | |
| GTAACTTCCTTAGATTCCTC+CGG | - | chr1_3:2512460-2512479 | None:intergenic | 40.0% | |
| AAAGTTCGTCGTTCACTCAA+AGG | + | chr1_3:2512532-2512551 | Msa0096800:CDS | 40.0% | |
| AAAAGGCAAAACTCTTCACC+TGG | - | chr1_3:2512562-2512581 | None:intergenic | 40.0% | |
| AGAAAAAGCGGATCCATTGA+AGG | + | chr1_3:2512696-2512715 | Msa0096800:CDS | 40.0% | |
| AGGTTCTTGAAAGAGTTCAG+AGG | + | chr1_3:2512716-2512735 | Msa0096800:CDS | 40.0% | |
| !! | CTTGTTCTGAAGGTGGTTTA+GGG | - | chr1_3:2512777-2512796 | None:intergenic | 40.0% |
| !! | TCTTGTTCTGAAGGTGGTTT+AGG | - | chr1_3:2512778-2512797 | None:intergenic | 40.0% |
| ! | TTCTTTTCTTCCTGTGGCTT+AGG | - | chr1_3:2512826-2512845 | None:intergenic | 40.0% |
| ! | TCAGCTTTCTTTTCTTCCTG+TGG | - | chr1_3:2512832-2512851 | None:intergenic | 40.0% |
| GGAAGAAAAGAAAGCTGAAG+AGG | + | chr1_3:2512834-2512853 | Msa0096800:CDS | 40.0% | |
| CTGACAAATTCCTGAAAGGA+TGG | - | chr1_3:2513125-2513144 | None:intergenic | 40.0% | |
| ACTAGTGAGTTCTTCAGATC+CGG | - | chr1_3:2513364-2513383 | None:intergenic | 40.0% | |
| AACTCACTAGTGACAGTGAA+AGG | + | chr1_3:2513373-2513392 | Msa0096800:CDS | 40.0% | |
| GAAAAAGATCAGAAAGGGAG+TGG | + | chr1_3:2513532-2513551 | Msa0096800:CDS | 40.0% | |
| TAATCCACCAAGGTATGGTA+CGG | + | chr1_3:2513681-2513700 | Msa0096800:CDS | 40.0% | |
| TAAAACTCCGTACCATACCT+TGG | - | chr1_3:2513691-2513710 | None:intergenic | 40.0% | |
| !! | ACGGAGTTTTATGCATATCC+TGG | + | chr1_3:2513700-2513719 | Msa0096800:CDS | 40.0% |
| AAAATTTGAGGAGGGTAAGC+TGG | - | chr1_3:2513727-2513746 | None:intergenic | 40.0% | |
| ! | ACTGCAGGGAAAAGTACATA+GGG | - | chr1_3:2513894-2513913 | None:intergenic | 40.0% |
| ! | TACTGCAGGGAAAAGTACAT+AGG | - | chr1_3:2513895-2513914 | None:intergenic | 40.0% |
| GAGAGATATAGAAGCTAGGT+TGG | - | chr1_3:2512146-2512165 | None:intergenic | 40.0% | |
| GAGAGAGAGATATAGAAGCT+AGG | - | chr1_3:2512150-2512169 | None:intergenic | 40.0% | |
| AGTCAGTCACACTAAACCAA+TGG | + | chr1_3:2512203-2512222 | Msa0096800:exon | 40.0% | |
| GTCAGTCACACTAAACCAAT+GGG | + | chr1_3:2512204-2512223 | Msa0096800:exon | 40.0% | |
| AGTAGAGGAGAAAAAACCAG+AGG | + | chr1_3:2512369-2512388 | Msa0096800:CDS | 40.0% | |
| ! | TTTTTCTCTTCTTCTGTCGG+TGG | - | chr1_3:2512436-2512455 | None:intergenic | 40.0% |
| AGAAGAAGAGAAAAAACCGG+AGG | + | chr1_3:2512441-2512460 | Msa0096800:CDS | 40.0% | |
| GAAAAAACCGGAGGAATCTA+AGG | + | chr1_3:2512450-2512469 | Msa0096800:CDS | 40.0% | |
| GTAACTTCCTTAGATTCCTC+CGG | - | chr1_3:2512460-2512479 | None:intergenic | 40.0% | |
| AAAGTTCGTCGTTCACTCAA+AGG | + | chr1_3:2512532-2512551 | Msa0096800:CDS | 40.0% | |
| AAAAGGCAAAACTCTTCACC+TGG | - | chr1_3:2512562-2512581 | None:intergenic | 40.0% | |
| AGAAAAAGCGGATCCATTGA+AGG | + | chr1_3:2512696-2512715 | Msa0096800:CDS | 40.0% | |
| AGGTTCTTGAAAGAGTTCAG+AGG | + | chr1_3:2512716-2512735 | Msa0096800:CDS | 40.0% | |
| !! | CTTGTTCTGAAGGTGGTTTA+GGG | - | chr1_3:2512777-2512796 | None:intergenic | 40.0% |
| !! | TCTTGTTCTGAAGGTGGTTT+AGG | - | chr1_3:2512778-2512797 | None:intergenic | 40.0% |
| ! | TTCTTTTCTTCCTGTGGCTT+AGG | - | chr1_3:2512826-2512845 | None:intergenic | 40.0% |
| ! | TCAGCTTTCTTTTCTTCCTG+TGG | - | chr1_3:2512832-2512851 | None:intergenic | 40.0% |
| GGAAGAAAAGAAAGCTGAAG+AGG | + | chr1_3:2512834-2512853 | Msa0096800:CDS | 40.0% | |
| CTGACAAATTCCTGAAAGGA+TGG | - | chr1_3:2513125-2513144 | None:intergenic | 40.0% | |
| ACTAGTGAGTTCTTCAGATC+CGG | - | chr1_3:2513364-2513383 | None:intergenic | 40.0% | |
| AACTCACTAGTGACAGTGAA+AGG | + | chr1_3:2513373-2513392 | Msa0096800:CDS | 40.0% | |
| GAAAAAGATCAGAAAGGGAG+TGG | + | chr1_3:2513532-2513551 | Msa0096800:CDS | 40.0% | |
| TAATCCACCAAGGTATGGTA+CGG | + | chr1_3:2513681-2513700 | Msa0096800:CDS | 40.0% | |
| TAAAACTCCGTACCATACCT+TGG | - | chr1_3:2513691-2513710 | None:intergenic | 40.0% | |
| !! | ACGGAGTTTTATGCATATCC+TGG | + | chr1_3:2513700-2513719 | Msa0096800:CDS | 40.0% |
| AAAATTTGAGGAGGGTAAGC+TGG | - | chr1_3:2513727-2513746 | None:intergenic | 40.0% | |
| ! | ACTGCAGGGAAAAGTACATA+GGG | - | chr1_3:2513894-2513913 | None:intergenic | 40.0% |
| ! | TACTGCAGGGAAAAGTACAT+AGG | - | chr1_3:2513895-2513914 | None:intergenic | 40.0% |
| !! | TAGAAGCTAGGTTGGTTCTG+CGG | - | chr1_3:2512138-2512157 | None:intergenic | 45.0% |
| ! | AGTGTGACTGACTGACTCAA+AGG | - | chr1_3:2512196-2512215 | None:intergenic | 45.0% |
| TCACACTAAACCAATGGGAG+AGG | + | chr1_3:2512209-2512228 | Msa0096800:exon | 45.0% | |
| ACTAAACCAATGGGAGAGGT+TGG | + | chr1_3:2512213-2512232 | Msa0096800:intron | 45.0% | |
| ACCAGAGGAAACGAAAGTAG+AGG | + | chr1_3:2512354-2512373 | Msa0096800:CDS | 45.0% | |
| TCCTCTACTTTCGTTTCCTC+TGG | - | chr1_3:2512358-2512377 | None:intergenic | 45.0% | |
| ! | CGTTCACTCAAAGGTTTTCC+AGG | + | chr1_3:2512541-2512560 | Msa0096800:CDS | 45.0% |
| TCTGAAGGTGGTTTAGGGAT+CGG | - | chr1_3:2512772-2512791 | None:intergenic | 45.0% | |
| GAAAGAGAAACCTAAGCCAC+AGG | + | chr1_3:2512813-2512832 | Msa0096800:CDS | 45.0% | |
| TTCTCATGTCCCATCCTTTC+AGG | + | chr1_3:2513112-2513131 | Msa0096800:intron | 45.0% | |
| AGGAGTTGAATCAGCTGAAC+CGG | + | chr1_3:2513342-2513361 | Msa0096800:intron | 45.0% | |
| GATGGAAAACCAAGTGGTGA+TGG | + | chr1_3:2513601-2513620 | Msa0096800:CDS | 45.0% | |
| AGGTGGTGCAGAAGAAGTTA+AGG | + | chr1_3:2513627-2513646 | Msa0096800:CDS | 45.0% | |
| TGGTGCAGAAGAAGTTAAGG+TGG | + | chr1_3:2513630-2513649 | Msa0096800:CDS | 45.0% | |
| TGCAGAAGAAGTTAAGGTGG+TGG | + | chr1_3:2513633-2513652 | Msa0096800:CDS | 45.0% | |
| !! | TAGAAGCTAGGTTGGTTCTG+CGG | - | chr1_3:2512138-2512157 | None:intergenic | 45.0% |
| ! | AGTGTGACTGACTGACTCAA+AGG | - | chr1_3:2512196-2512215 | None:intergenic | 45.0% |
| TCACACTAAACCAATGGGAG+AGG | + | chr1_3:2512209-2512228 | Msa0096800:exon | 45.0% | |
| ACTAAACCAATGGGAGAGGT+TGG | + | chr1_3:2512213-2512232 | Msa0096800:intron | 45.0% | |
| ACCAGAGGAAACGAAAGTAG+AGG | + | chr1_3:2512354-2512373 | Msa0096800:CDS | 45.0% | |
| TCCTCTACTTTCGTTTCCTC+TGG | - | chr1_3:2512358-2512377 | None:intergenic | 45.0% | |
| ! | CGTTCACTCAAAGGTTTTCC+AGG | + | chr1_3:2512541-2512560 | Msa0096800:CDS | 45.0% |
| TCTGAAGGTGGTTTAGGGAT+CGG | - | chr1_3:2512772-2512791 | None:intergenic | 45.0% | |
| GAAAGAGAAACCTAAGCCAC+AGG | + | chr1_3:2512813-2512832 | Msa0096800:CDS | 45.0% | |
| TTCTCATGTCCCATCCTTTC+AGG | + | chr1_3:2513112-2513131 | Msa0096800:intron | 45.0% | |
| AGGAGTTGAATCAGCTGAAC+CGG | + | chr1_3:2513342-2513361 | Msa0096800:intron | 45.0% | |
| GATGGAAAACCAAGTGGTGA+TGG | + | chr1_3:2513601-2513620 | Msa0096800:CDS | 45.0% | |
| AGGTGGTGCAGAAGAAGTTA+AGG | + | chr1_3:2513627-2513646 | Msa0096800:CDS | 45.0% | |
| TGGTGCAGAAGAAGTTAAGG+TGG | + | chr1_3:2513630-2513649 | Msa0096800:CDS | 45.0% | |
| TGCAGAAGAAGTTAAGGTGG+TGG | + | chr1_3:2513633-2513652 | Msa0096800:CDS | 45.0% | |
| !!! | ATCATTTTTATTTTATTATA+TGG | + | chr1_3:2512918-2512937 | Msa0096800:intron | 5.0% |
| !!! | AGTTAAAATATTTTATAATA+AGG | - | chr1_3:2513235-2513254 | None:intergenic | 5.0% |
| !!! | ATCATTTTTATTTTATTATA+TGG | + | chr1_3:2512918-2512937 | Msa0096800:intron | 5.0% |
| !!! | AGTTAAAATATTTTATAATA+AGG | - | chr1_3:2513235-2513254 | None:intergenic | 5.0% |
| AGAGAACCAACCTCTCCCAT+TGG | - | chr1_3:2512222-2512241 | None:intergenic | 50.0% | |
| TCTTTCTTCGGTGGTTCCTC+TGG | - | chr1_3:2512388-2512407 | None:intergenic | 50.0% | |
| AAGTGGTCCTGCAAGTGCAA+AGG | + | chr1_3:2513270-2513289 | Msa0096800:intron | 50.0% | |
| AGTGGTCCTGCAAGTGCAAA+GGG | + | chr1_3:2513271-2513290 | Msa0096800:intron | 50.0% | |
| GATCAGAAAGGGAGTGGTGA+AGG | + | chr1_3:2513538-2513557 | Msa0096800:CDS | 50.0% | |
| GAGGGAGATGGAAAACCAAG+TGG | + | chr1_3:2513595-2513614 | Msa0096800:CDS | 50.0% | |
| !! | GGAAAACCAAGTGGTGATGG+AGG | + | chr1_3:2513604-2513623 | Msa0096800:CDS | 50.0% |
| !! | AAACCAAGTGGTGATGGAGG+AGG | + | chr1_3:2513607-2513626 | Msa0096800:CDS | 50.0% |
| AACTCCGTACCATACCTTGG+TGG | - | chr1_3:2513688-2513707 | None:intergenic | 50.0% | |
| TCTGGGTGAAAGCCATATCC+TGG | + | chr1_3:2513858-2513877 | Msa0096800:three_prime_UTR | 50.0% | |
| CTGGGTGAAAGCCATATCCT+GGG | + | chr1_3:2513859-2513878 | Msa0096800:three_prime_UTR | 50.0% | |
| GGCACATCTTACCCAGGATA+TGG | - | chr1_3:2513873-2513892 | None:intergenic | 50.0% | |
| ACATAGGGCACATCTTACCC+AGG | - | chr1_3:2513879-2513898 | None:intergenic | 50.0% | |
| AGAGAACCAACCTCTCCCAT+TGG | - | chr1_3:2512222-2512241 | None:intergenic | 50.0% | |
| TCTTTCTTCGGTGGTTCCTC+TGG | - | chr1_3:2512388-2512407 | None:intergenic | 50.0% | |
| AAGTGGTCCTGCAAGTGCAA+AGG | + | chr1_3:2513270-2513289 | Msa0096800:intron | 50.0% | |
| AGTGGTCCTGCAAGTGCAAA+GGG | + | chr1_3:2513271-2513290 | Msa0096800:intron | 50.0% | |
| GATCAGAAAGGGAGTGGTGA+AGG | + | chr1_3:2513538-2513557 | Msa0096800:CDS | 50.0% | |
| GAGGGAGATGGAAAACCAAG+TGG | + | chr1_3:2513595-2513614 | Msa0096800:CDS | 50.0% | |
| !! | GGAAAACCAAGTGGTGATGG+AGG | + | chr1_3:2513604-2513623 | Msa0096800:CDS | 50.0% |
| !! | AAACCAAGTGGTGATGGAGG+AGG | + | chr1_3:2513607-2513626 | Msa0096800:CDS | 50.0% |
| AACTCCGTACCATACCTTGG+TGG | - | chr1_3:2513688-2513707 | None:intergenic | 50.0% | |
| TCTGGGTGAAAGCCATATCC+TGG | + | chr1_3:2513858-2513877 | Msa0096800:three_prime_UTR | 50.0% | |
| CTGGGTGAAAGCCATATCCT+GGG | + | chr1_3:2513859-2513878 | Msa0096800:three_prime_UTR | 50.0% | |
| GGCACATCTTACCCAGGATA+TGG | - | chr1_3:2513873-2513892 | None:intergenic | 50.0% | |
| ACATAGGGCACATCTTACCC+AGG | - | chr1_3:2513879-2513898 | None:intergenic | 50.0% | |
| GTCACACCCTTTGCACTTGC+AGG | - | chr1_3:2513280-2513299 | None:intergenic | 55.0% | |
| GAAAGGGAGTGGTGAAGGAG+AGG | + | chr1_3:2513543-2513562 | Msa0096800:CDS | 55.0% | |
| GTCACACCCTTTGCACTTGC+AGG | - | chr1_3:2513280-2513299 | None:intergenic | 55.0% | |
| GAAAGGGAGTGGTGAAGGAG+AGG | + | chr1_3:2513543-2513562 | Msa0096800:CDS | 55.0% | |
| CCACCTCCTCCATCACCACT+TGG | - | chr1_3:2513613-2513632 | None:intergenic | 60.0% | |
| !! | CCAAGTGGTGATGGAGGAGG+TGG | + | chr1_3:2513610-2513629 | Msa0096800:CDS | 60.0% |
| TGAGGAGGGTAAGCTGGACC+AGG | - | chr1_3:2513721-2513740 | None:intergenic | 60.0% | |
| CCACCTCCTCCATCACCACT+TGG | - | chr1_3:2513613-2513632 | None:intergenic | 60.0% | |
| !! | CCAAGTGGTGATGGAGGAGG+TGG | + | chr1_3:2513610-2513629 | Msa0096800:CDS | 60.0% |
| TGAGGAGGGTAAGCTGGACC+AGG | - | chr1_3:2513721-2513740 | None:intergenic | 60.0% | |
| AGCTGCAGCTGCAGCTGCAG+AGG | + | chr1_3:2513576-2513595 | Msa0096800:CDS | 65.0% | |
| GCTGCAGCTGCAGCTGCAGA+GGG | + | chr1_3:2513577-2513596 | Msa0096800:CDS | 65.0% | |
| GCTGCAGCTGCAGAGGGAGA+TGG | + | chr1_3:2513583-2513602 | Msa0096800:CDS | 65.0% | |
| AGCTGCAGCTGCAGCTGCAG+AGG | + | chr1_3:2513576-2513595 | Msa0096800:CDS | 65.0% | |
| GCTGCAGCTGCAGCTGCAGA+GGG | + | chr1_3:2513577-2513596 | Msa0096800:CDS | 65.0% | |
| GCTGCAGCTGCAGAGGGAGA+TGG | + | chr1_3:2513583-2513602 | Msa0096800:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 2512061 | 2514044 | 2512061 | ID=Msa0096800;Name=Msa0096800 |
| chr1_3 | mRNA | 2512061 | 2514044 | 2512061 | ID=Msa0096800-mRNA-1;Parent=Msa0096800;Name=Msa0096800-mRNA-1;_AED=0.01;_eAED=0.01;_QI=161|1|1|1|1|1|5|261|322 |
| chr1_3 | exon | 2512061 | 2512230 | 2512061 | ID=Msa0096800-mRNA-1:exon:660;Parent=Msa0096800-mRNA-1 |
| chr1_3 | exon | 2512343 | 2512562 | 2512343 | ID=Msa0096800-mRNA-1:exon:661;Parent=Msa0096800-mRNA-1 |
| chr1_3 | exon | 2512644 | 2512855 | 2512644 | ID=Msa0096800-mRNA-1:exon:662;Parent=Msa0096800-mRNA-1 |
| chr1_3 | exon | 2512946 | 2513033 | 2512946 | ID=Msa0096800-mRNA-1:exon:663;Parent=Msa0096800-mRNA-1 |
| chr1_3 | exon | 2513344 | 2514044 | 2513344 | ID=Msa0096800-mRNA-1:exon:664;Parent=Msa0096800-mRNA-1 |
| chr1_3 | five_prime_UTR | 2512061 | 2512221 | 2512061 | ID=Msa0096800-mRNA-1:five_prime_utr;Parent=Msa0096800-mRNA-1 |
| chr1_3 | CDS | 2512222 | 2512230 | 2512222 | ID=Msa0096800-mRNA-1:cds;Parent=Msa0096800-mRNA-1 |
| chr1_3 | CDS | 2512343 | 2512562 | 2512343 | ID=Msa0096800-mRNA-1:cds;Parent=Msa0096800-mRNA-1 |
| chr1_3 | CDS | 2512644 | 2512855 | 2512644 | ID=Msa0096800-mRNA-1:cds;Parent=Msa0096800-mRNA-1 |
| chr1_3 | CDS | 2512946 | 2513033 | 2512946 | ID=Msa0096800-mRNA-1:cds;Parent=Msa0096800-mRNA-1 |
| chr1_3 | CDS | 2513344 | 2513783 | 2513344 | ID=Msa0096800-mRNA-1:cds;Parent=Msa0096800-mRNA-1 |
| chr1_3 | three_prime_UTR | 2513784 | 2514044 | 2513784 | ID=Msa0096800-mRNA-1:three_prime_utr;Parent=Msa0096800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
