AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0339490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0339490 MtrunA17_Chr2g0327931 98.039 153 3 0 1 153 1 153 1.24e-103 293
Msa0339490 MtrunA17_Chr4g0031041 94.074 135 5 2 19 153 14 145 1.18e-83 242
Msa0339490 MtrunA17_Chr4g0035621 92.208 154 9 2 1 153 1 152 1.09e-81 237
Msa0339490 MtrunA17_Chr2g0327951 88.889 153 12 2 1 153 38 185 7.25e-81 236
Msa0339490 MtrunA17_Chr4g0031651 91.558 154 6 3 1 153 1 148 6.80e-79 230
Msa0339490 MtrunA17_Chr4g0031001 91.558 154 6 3 1 153 1 148 2.56e-78 229
Msa0339490 MtrunA17_Chr4g0032301 90.260 154 8 3 1 153 1 148 7.92e-77 225
Msa0339490 MtrunA17_Chr8g0379311 97.727 132 2 1 1 131 1 132 3.96e-74 218
Msa0339490 MtrunA17_Chr7g0272611 81.203 133 21 2 9 138 13 144 2.81e-71 211
Msa0339490 MtrunA17_Chr7g0268831 75.000 128 26 3 3 129 6 128 4.94e-60 182
Msa0339490 MtrunA17_Chr7g0259151 71.875 128 33 1 2 129 4 128 1.32e-59 181
Msa0339490 MtrunA17_Chr7g0273351 73.438 128 29 2 3 129 2 125 2.27e-59 180
Msa0339490 MtrunA17_Chr2g0319191 74.790 119 30 0 10 128 3 121 1.27e-58 178
Msa0339490 MtrunA17_Chr7g0273331 73.228 127 31 1 3 129 58 181 1.33e-58 180
Msa0339490 MtrunA17_Chr2g0319181 73.950 119 31 0 10 128 3 121 1.45e-57 176
Msa0339490 MtrunA17_Chr6g0449661 64.754 122 29 3 23 138 85 198 3.59e-46 149
Msa0339490 MtrunA17_Chr4g0031031 76.147 109 17 2 44 152 10 109 8.13e-46 145
Msa0339490 MtrunA17_Chr3g0119971 64.463 121 29 3 24 138 81 193 1.04e-45 147
Msa0339490 MtrunA17_Chr7g0273341 71.296 108 20 2 22 129 57 153 2.51e-45 145
Msa0339490 MtrunA17_Chr1g0148961 59.821 112 43 2 20 130 23 133 7.11e-36 120
Msa0339490 MtrunA17_Chr1g0148951 59.821 112 43 2 20 130 23 133 7.11e-36 120
Msa0339490 MtrunA17_Chr1g0211651 59.633 109 42 2 20 127 20 127 6.27e-35 118
Msa0339490 MtrunA17_Chr1g0184901 61.538 104 38 2 25 127 28 130 2.94e-34 116
Msa0339490 MtrunA17_Chr1g0183701 61.644 73 28 0 66 138 30 102 9.55e-27 96.7
Msa0339490 MtrunA17_Chr4g0024701 49.524 105 33 2 23 127 26 110 5.06e-22 85.1
Msa0339490 MtrunA17_Chr4g0000531 60.000 55 22 0 84 138 5 59 8.33e-16 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0339490 AT5G02560.1 80.519 154 28 2 1 153 1 153 3.36e-78 229
Msa0339490 AT5G02560.2 69.663 178 28 3 1 153 1 177 2.38e-73 218
Msa0339490 AT5G27670.1 75.000 152 32 2 2 153 5 150 3.60e-73 216
Msa0339490 AT5G59870.1 73.377 154 36 2 1 153 1 150 1.42e-72 214
Msa0339490 AT1G51060.1 76.667 120 28 0 10 129 3 122 7.36e-61 184
Msa0339490 AT4G27230.2 73.984 123 32 0 10 132 3 125 1.39e-59 181
Msa0339490 AT4G27230.1 73.984 123 32 0 10 132 3 125 1.39e-59 181
Msa0339490 AT3G20670.1 71.318 129 37 0 10 138 3 131 3.01e-59 180
Msa0339490 AT5G54640.1 74.790 119 30 0 10 128 3 121 3.25e-58 177
Msa0339490 AT1G08880.1 72.222 126 32 1 7 129 3 128 3.71e-58 178
Msa0339490 AT1G54690.1 73.171 123 30 1 10 129 6 128 9.00e-58 177
Msa0339490 AT2G38810.1 59.821 112 43 2 20 130 25 135 2.08e-36 122
Msa0339490 AT2G38810.4 59.821 112 43 2 20 130 25 135 2.08e-36 122
Msa0339490 AT2G38810.3 59.821 112 43 2 20 130 25 135 2.08e-36 122
Msa0339490 AT2G38810.2 59.821 112 43 2 20 130 25 135 2.08e-36 122
Msa0339490 AT1G52740.1 61.905 105 38 2 24 127 27 130 1.35e-34 118
Msa0339490 AT3G54560.1 59.259 108 42 2 24 130 29 135 2.47e-34 117
Msa0339490 AT3G54560.2 59.259 108 42 2 24 130 29 135 2.47e-34 117
Msa0339490 AT4G13570.1 47.826 92 46 2 31 121 28 118 7.97e-20 79.7
Msa0339490 AT4G13570.2 47.253 91 46 2 32 121 35 124 1.74e-19 79.0

Find 61 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACTCCATAGACAATTTA+AGG 0.186735 2_4:+60621800 None:intergenic
CCATTTCCGAGATTGGAATT+TGG 0.219353 2_4:+60622532 None:intergenic
AACCTAATCTAAGCCTTCTT+TGG 0.260442 2_4:+60621973 None:intergenic
GCGTTTGAAATGATGTAATT+TGG 0.268471 2_4:-60621878 Msa0339490:three_prime_UTR
GTAGACCTTTCAGTCTTCTT+AGG 0.271890 2_4:+60622045 None:intergenic
TATTTGCCTTAAATTGTCTA+TGG 0.279063 2_4:-60621806 Msa0339490:three_prime_UTR
CTTGCGTCCATTTCCGAGAT+TGG 0.309548 2_4:+60622525 None:intergenic
GGCTTAGATTAGGTTTCTTA+TGG 0.319196 2_4:-60621965 Msa0339490:exon
GTCTTCTTAGGCAAAAGAAC+AGG 0.334824 2_4:+60622057 None:intergenic
ACCAGCTCCTTTCTTCGTCT+TGG 0.348361 2_4:+60622500 None:intergenic
TTATGTTTAGGTTCTTGAAT+TGG 0.357612 2_4:-60622220 Msa0339490:intron
AGAACAGCGGCGAGGTAAAC+AGG 0.381456 2_4:+60622345 None:intergenic
AAAAGAACAGGGTTAATGTT+TGG 0.382061 2_4:+60622069 None:intergenic
CAATTTCCAGTTGGAAGAAT+CGG 0.382886 2_4:-60622417 Msa0339490:CDS
TGTGTGTATAATTGCGCTTT+AGG 0.395647 2_4:-60621929 Msa0339490:three_prime_UTR
GCCTTAGGCTTAGGAGACTT+TGG 0.397268 2_4:+60622006 None:intergenic
CTCCAAAGAAGGCTTAGATT+AGG 0.399064 2_4:-60621975 Msa0339490:exon
GACTTTCCAGCCTTAGGCTT+AGG 0.400283 2_4:+60621997 None:intergenic
CTGGTCACAGACTTCTTCCT+TGG 0.400754 2_4:+60622459 None:intergenic
TTTGGAGACTTTCCAGCCTT+AGG 0.406671 2_4:+60621991 None:intergenic
CCAAATTCCAATCTCGGAAA+TGG 0.413559 2_4:-60622532 Msa0339490:exon
GAATTCGGTGTGAAATGAAA+TGG 0.427452 2_4:+60622575 None:intergenic
TGATGTAATTTGGAAGTCTC+TGG 0.433364 2_4:-60621868 Msa0339490:three_prime_UTR
GTTTAGGTTCTTGAATTGGC+TGG 0.434556 2_4:-60622216 Msa0339490:intron
TAACGGCCGATTCTTCCAAC+TGG 0.469071 2_4:+60622411 None:intergenic
AGGGTTCCAAATTCCAATCT+CGG 0.476240 2_4:-60622538 Msa0339490:five_prime_UTR
AAAGGAGCTGGTGGAAGGAA+AGG 0.477487 2_4:-60622489 Msa0339490:CDS
AATTCCAAGGCACGTGTTGT+TGG 0.477559 2_4:-60622160 Msa0339490:CDS
GGAGCTGGTGGAAGGAAAGG+TGG 0.481033 2_4:-60622486 Msa0339490:CDS
GCAAGCACCAAGACGAAGAA+AGG 0.482883 2_4:-60622507 Msa0339490:CDS
ACAGCCAACAACACGTGCCT+TGG 0.485674 2_4:+60622156 None:intergenic
TTGTAACATCTAATCGTGTA+AGG 0.486152 2_4:+60621696 None:intergenic
AAGACCAGCTCTGATGGATC+TGG 0.491289 2_4:+60622440 None:intergenic
ATCTTCCTTTCTTCAAGTAA+CGG 0.498085 2_4:+60622394 None:intergenic
AAATTGAAGACCAGCTCTGA+TGG 0.498711 2_4:+60622434 None:intergenic
TACGCTCAACGTGTTGGTAC+TGG 0.502701 2_4:-60622372 Msa0339490:CDS
TGTATAATTGCGCTTTAGGT+TGG 0.511963 2_4:-60621925 Msa0339490:three_prime_UTR
TGTGAGAAATGATGAAGAGC+TGG 0.520971 2_4:-60622136 Msa0339490:CDS
CACGTGATAACAAGAAGAAT+AGG 0.529318 2_4:-60622185 Msa0339490:CDS
GGCTGGAAAGTCTCCAAAGA+AGG 0.542007 2_4:-60621986 Msa0339490:CDS
AAGTCTCCTAAGCCTAAGGC+TGG 0.542736 2_4:-60622003 Msa0339490:CDS
ATCGGCCGTTACTTGAAGAA+AGG 0.544708 2_4:-60622399 Msa0339490:CDS
ACCAAAGTCTCCTAAGCCTA+AGG 0.550123 2_4:-60622007 Msa0339490:CDS
GTGACCAGATCCATCAGAGC+TGG 0.553138 2_4:-60622444 Msa0339490:CDS
CGAAGAAAGGAGCTGGTGGA+AGG 0.557443 2_4:-60622494 Msa0339490:CDS
AAGGTCTACTAATGCTAGCA+AGG 0.572544 2_4:-60622031 Msa0339490:CDS
ACCAAGACGAAGAAAGGAGC+TGG 0.579581 2_4:-60622501 Msa0339490:CDS
GAGCTGGGAAAATTGTTAGC+TGG 0.589509 2_4:-60622120 Msa0339490:CDS
GGAAGATACGCTCAACGTGT+TGG 0.597552 2_4:-60622378 Msa0339490:CDS
GCTGGTCTTCAATTTCCAGT+TGG 0.598252 2_4:-60622426 Msa0339490:CDS
GAAGGAAAGGTGGAGGACCA+AGG 0.610388 2_4:-60622476 Msa0339490:CDS
TCTTCTTAGGCAAAAGAACA+GGG 0.618533 2_4:+60622058 None:intergenic
GCTGGTGGAAGGAAAGGTGG+AGG 0.624747 2_4:-60622483 Msa0339490:CDS
AGAAGAATAGGATAATTCCA+AGG 0.643694 2_4:-60622173 Msa0339490:CDS
GTGAGAAATGATGAAGAGCT+GGG 0.654622 2_4:-60622135 Msa0339490:CDS
AAGACGAAGAAAGGAGCTGG+TGG 0.662071 2_4:-60622498 Msa0339490:CDS
TCTTGAATATCTCGCTGCTG+AGG 0.665898 2_4:-60622325 Msa0339490:intron
AGCGAGATATTCAAGAACAG+CGG 0.706002 2_4:+60622332 None:intergenic
GATATTCAAGAACAGCGGCG+AGG 0.723455 2_4:+60622337 None:intergenic
GCTGGTGTAACAATTGCACA+TGG 0.750058 2_4:-60622102 Msa0339490:CDS
GGTGTAACAATTGCACATGG+TGG 0.783361 2_4:-60622099 Msa0339490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAAACATAAAAATAAAATT+AGG + chr2_4:60622004-60622023 None:intergenic 10.0%
!!! CTAATTTTATTTTTATGTTT+AGG - chr2_4:60622002-60622021 Msa0339490:CDS 10.0%
!! CTAAACATAAAAATAAAATT+AGG + chr2_4:60622004-60622023 None:intergenic 10.0%
!!! CTAATTTTATTTTTATGTTT+AGG - chr2_4:60622002-60622021 Msa0339490:CDS 10.0%
!!! TAACTTTTTTGCTACGAATT+CGG + chr2_4:60621677-60621696 None:intergenic 25.0%
! AATTCGTAGCAAAAAAGTTA+GGG - chr2_4:60621677-60621696 Msa0339490:three_prime_UTR 25.0%
! GTTACAAAATTGGAAATCAA+AGG + chr2_4:60621961-60621980 None:intergenic 25.0%
! CAAAATTAGGGTTACAAAAT+TGG + chr2_4:60621971-60621990 None:intergenic 25.0%
! GGGTTACAAATTCAAAATTA+GGG + chr2_4:60621983-60622002 None:intergenic 25.0%
! AGGGTTACAAATTCAAAATT+AGG + chr2_4:60621984-60622003 None:intergenic 25.0%
!! TTATGTTTAGGTTCTTGAAT+TGG - chr2_4:60622014-60622033 Msa0339490:CDS 25.0%
! TATTTGCCTTAAATTGTCTA+TGG - chr2_4:60622428-60622447 Msa0339490:CDS 25.0%
!!! TAACTTTTTTGCTACGAATT+CGG + chr2_4:60621677-60621696 None:intergenic 25.0%
! AATTCGTAGCAAAAAAGTTA+GGG - chr2_4:60621677-60621696 Msa0339490:three_prime_UTR 25.0%
! GTTACAAAATTGGAAATCAA+AGG + chr2_4:60621961-60621980 None:intergenic 25.0%
! CAAAATTAGGGTTACAAAAT+TGG + chr2_4:60621971-60621990 None:intergenic 25.0%
! GGGTTACAAATTCAAAATTA+GGG + chr2_4:60621983-60622002 None:intergenic 25.0%
! AGGGTTACAAATTCAAAATT+AGG + chr2_4:60621984-60622003 None:intergenic 25.0%
!! TTATGTTTAGGTTCTTGAAT+TGG - chr2_4:60622014-60622033 Msa0339490:CDS 25.0%
! TATTTGCCTTAAATTGTCTA+TGG - chr2_4:60622428-60622447 Msa0339490:CDS 25.0%
! ATGAAATGGAAGATTTTGAG+TGG + chr2_4:60621648-60621667 None:intergenic 30.0%
GAATTCGTAGCAAAAAAGTT+AGG - chr2_4:60621676-60621695 Msa0339490:three_prime_UTR 30.0%
ATCTTCCTTTCTTCAAGTAA+CGG + chr2_4:60621843-60621862 None:intergenic 30.0%
AATCAAAGGTCATAAGAAAG+AGG + chr2_4:60621947-60621966 None:intergenic 30.0%
AGAAGAATAGGATAATTCCA+AGG - chr2_4:60622061-60622080 Msa0339490:CDS 30.0%
AAAAGAACAGGGTTAATGTT+TGG + chr2_4:60622168-60622187 None:intergenic 30.0%
! GCGTTTGAAATGATGTAATT+TGG - chr2_4:60622356-60622375 Msa0339490:CDS 30.0%
CAAACTCCATAGACAATTTA+AGG + chr2_4:60622437-60622456 None:intergenic 30.0%
TTGTAACATCTAATCGTGTA+AGG + chr2_4:60622541-60622560 None:intergenic 30.0%
! ATGAAATGGAAGATTTTGAG+TGG + chr2_4:60621648-60621667 None:intergenic 30.0%
GAATTCGTAGCAAAAAAGTT+AGG - chr2_4:60621676-60621695 Msa0339490:three_prime_UTR 30.0%
ATCTTCCTTTCTTCAAGTAA+CGG + chr2_4:60621843-60621862 None:intergenic 30.0%
AATCAAAGGTCATAAGAAAG+AGG + chr2_4:60621947-60621966 None:intergenic 30.0%
AGAAGAATAGGATAATTCCA+AGG - chr2_4:60622061-60622080 Msa0339490:CDS 30.0%
AAAAGAACAGGGTTAATGTT+TGG + chr2_4:60622168-60622187 None:intergenic 30.0%
! GCGTTTGAAATGATGTAATT+TGG - chr2_4:60622356-60622375 Msa0339490:CDS 30.0%
CAAACTCCATAGACAATTTA+AGG + chr2_4:60622437-60622456 None:intergenic 30.0%
TTGTAACATCTAATCGTGTA+AGG + chr2_4:60622541-60622560 None:intergenic 30.0%
!! GAATTCGGTGTGAAATGAAA+TGG + chr2_4:60621662-60621681 None:intergenic 35.0%
CAATTTCCAGTTGGAAGAAT+CGG - chr2_4:60621817-60621836 Msa0339490:three_prime_UTR 35.0%
CACGTGATAACAAGAAGAAT+AGG - chr2_4:60622049-60622068 Msa0339490:CDS 35.0%
TCTTCTTAGGCAAAAGAACA+GGG + chr2_4:60622179-60622198 None:intergenic 35.0%
! TTTTGCCTAAGAAGACTGAA+AGG - chr2_4:60622184-60622203 Msa0339490:CDS 35.0%
AACCTAATCTAAGCCTTCTT+TGG + chr2_4:60622264-60622283 None:intergenic 35.0%
GGCTTAGATTAGGTTTCTTA+TGG - chr2_4:60622269-60622288 Msa0339490:intron 35.0%
TGTGTGTATAATTGCGCTTT+AGG - chr2_4:60622305-60622324 Msa0339490:intron 35.0%
! TGTATAATTGCGCTTTAGGT+TGG - chr2_4:60622309-60622328 Msa0339490:intron 35.0%
!!! TTAGGTTGGTGTTTTGTAAC+TGG - chr2_4:60622323-60622342 Msa0339490:intron 35.0%
TGATGTAATTTGGAAGTCTC+TGG - chr2_4:60622366-60622385 Msa0339490:CDS 35.0%
!! GAATTCGGTGTGAAATGAAA+TGG + chr2_4:60621662-60621681 None:intergenic 35.0%
CAATTTCCAGTTGGAAGAAT+CGG - chr2_4:60621817-60621836 Msa0339490:three_prime_UTR 35.0%
CACGTGATAACAAGAAGAAT+AGG - chr2_4:60622049-60622068 Msa0339490:CDS 35.0%
TCTTCTTAGGCAAAAGAACA+GGG + chr2_4:60622179-60622198 None:intergenic 35.0%
! TTTTGCCTAAGAAGACTGAA+AGG - chr2_4:60622184-60622203 Msa0339490:CDS 35.0%
AACCTAATCTAAGCCTTCTT+TGG + chr2_4:60622264-60622283 None:intergenic 35.0%
GGCTTAGATTAGGTTTCTTA+TGG - chr2_4:60622269-60622288 Msa0339490:intron 35.0%
TGTGTGTATAATTGCGCTTT+AGG - chr2_4:60622305-60622324 Msa0339490:intron 35.0%
! TGTATAATTGCGCTTTAGGT+TGG - chr2_4:60622309-60622328 Msa0339490:intron 35.0%
!!! TTAGGTTGGTGTTTTGTAAC+TGG - chr2_4:60622323-60622342 Msa0339490:intron 35.0%
TGATGTAATTTGGAAGTCTC+TGG - chr2_4:60622366-60622385 Msa0339490:CDS 35.0%
AGGGTTCCAAATTCCAATCT+CGG - chr2_4:60621696-60621715 Msa0339490:three_prime_UTR 40.0%
CCATTTCCGAGATTGGAATT+TGG + chr2_4:60621705-60621724 None:intergenic 40.0%
CCAAATTCCAATCTCGGAAA+TGG - chr2_4:60621702-60621721 Msa0339490:three_prime_UTR 40.0%
! AAATTGAAGACCAGCTCTGA+TGG + chr2_4:60621803-60621822 None:intergenic 40.0%
AGCGAGATATTCAAGAACAG+CGG + chr2_4:60621905-60621924 None:intergenic 40.0%
! GTTTAGGTTCTTGAATTGGC+TGG - chr2_4:60622018-60622037 Msa0339490:CDS 40.0%
TGTGAGAAATGATGAAGAGC+TGG - chr2_4:60622098-60622117 Msa0339490:CDS 40.0%
GTGAGAAATGATGAAGAGCT+GGG - chr2_4:60622099-60622118 Msa0339490:CDS 40.0%
GTCTTCTTAGGCAAAAGAAC+AGG + chr2_4:60622180-60622199 None:intergenic 40.0%
GTAGACCTTTCAGTCTTCTT+AGG + chr2_4:60622192-60622211 None:intergenic 40.0%
AAGGTCTACTAATGCTAGCA+AGG - chr2_4:60622203-60622222 Msa0339490:CDS 40.0%
CTCCAAAGAAGGCTTAGATT+AGG - chr2_4:60622259-60622278 Msa0339490:intron 40.0%
!! GTTGGTGTTTTGTAACTGGA+AGG - chr2_4:60622327-60622346 Msa0339490:CDS 40.0%
AGGGTTCCAAATTCCAATCT+CGG - chr2_4:60621696-60621715 Msa0339490:three_prime_UTR 40.0%
CCATTTCCGAGATTGGAATT+TGG + chr2_4:60621705-60621724 None:intergenic 40.0%
CCAAATTCCAATCTCGGAAA+TGG - chr2_4:60621702-60621721 Msa0339490:three_prime_UTR 40.0%
! AAATTGAAGACCAGCTCTGA+TGG + chr2_4:60621803-60621822 None:intergenic 40.0%
AGCGAGATATTCAAGAACAG+CGG + chr2_4:60621905-60621924 None:intergenic 40.0%
! GTTTAGGTTCTTGAATTGGC+TGG - chr2_4:60622018-60622037 Msa0339490:CDS 40.0%
TGTGAGAAATGATGAAGAGC+TGG - chr2_4:60622098-60622117 Msa0339490:CDS 40.0%
GTGAGAAATGATGAAGAGCT+GGG - chr2_4:60622099-60622118 Msa0339490:CDS 40.0%
GTCTTCTTAGGCAAAAGAAC+AGG + chr2_4:60622180-60622199 None:intergenic 40.0%
GTAGACCTTTCAGTCTTCTT+AGG + chr2_4:60622192-60622211 None:intergenic 40.0%
AAGGTCTACTAATGCTAGCA+AGG - chr2_4:60622203-60622222 Msa0339490:CDS 40.0%
CTCCAAAGAAGGCTTAGATT+AGG - chr2_4:60622259-60622278 Msa0339490:intron 40.0%
!! GTTGGTGTTTTGTAACTGGA+AGG - chr2_4:60622327-60622346 Msa0339490:CDS 40.0%
!! GCTGGTCTTCAATTTCCAGT+TGG - chr2_4:60621808-60621827 Msa0339490:three_prime_UTR 45.0%
ATCGGCCGTTACTTGAAGAA+AGG - chr2_4:60621835-60621854 Msa0339490:three_prime_UTR 45.0%
TCTTGAATATCTCGCTGCTG+AGG - chr2_4:60621909-60621928 Msa0339490:three_prime_UTR 45.0%
AATTCCAAGGCACGTGTTGT+TGG - chr2_4:60622074-60622093 Msa0339490:CDS 45.0%
GAGCTGGGAAAATTGTTAGC+TGG - chr2_4:60622114-60622133 Msa0339490:CDS 45.0%
GCTGGTGTAACAATTGCACA+TGG - chr2_4:60622132-60622151 Msa0339490:CDS 45.0%
GGTGTAACAATTGCACATGG+TGG - chr2_4:60622135-60622154 Msa0339490:CDS 45.0%
ACCAAAGTCTCCTAAGCCTA+AGG - chr2_4:60622227-60622246 Msa0339490:intron 45.0%
TTTGGAGACTTTCCAGCCTT+AGG + chr2_4:60622246-60622265 None:intergenic 45.0%
!! GCTGGTCTTCAATTTCCAGT+TGG - chr2_4:60621808-60621827 Msa0339490:three_prime_UTR 45.0%
ATCGGCCGTTACTTGAAGAA+AGG - chr2_4:60621835-60621854 Msa0339490:three_prime_UTR 45.0%
TCTTGAATATCTCGCTGCTG+AGG - chr2_4:60621909-60621928 Msa0339490:three_prime_UTR 45.0%
AATTCCAAGGCACGTGTTGT+TGG - chr2_4:60622074-60622093 Msa0339490:CDS 45.0%
GAGCTGGGAAAATTGTTAGC+TGG - chr2_4:60622114-60622133 Msa0339490:CDS 45.0%
GCTGGTGTAACAATTGCACA+TGG - chr2_4:60622132-60622151 Msa0339490:CDS 45.0%
GGTGTAACAATTGCACATGG+TGG - chr2_4:60622135-60622154 Msa0339490:CDS 45.0%
ACCAAAGTCTCCTAAGCCTA+AGG - chr2_4:60622227-60622246 Msa0339490:intron 45.0%
TTTGGAGACTTTCCAGCCTT+AGG + chr2_4:60622246-60622265 None:intergenic 45.0%
!! TAAACATAAAAATAAAATTA+GGG + chr2_4:60622003-60622022 None:intergenic 5.0%
!! TAAACATAAAAATAAAATTA+GGG + chr2_4:60622003-60622022 None:intergenic 5.0%
CTTGCGTCCATTTCCGAGAT+TGG + chr2_4:60621712-60621731 None:intergenic 50.0%
GCAAGCACCAAGACGAAGAA+AGG - chr2_4:60621727-60621746 Msa0339490:three_prime_UTR 50.0%
ACCAAGACGAAGAAAGGAGC+TGG - chr2_4:60621733-60621752 Msa0339490:three_prime_UTR 50.0%
ACCAGCTCCTTTCTTCGTCT+TGG + chr2_4:60621737-60621756 None:intergenic 50.0%
AAGACGAAGAAAGGAGCTGG+TGG - chr2_4:60621736-60621755 Msa0339490:three_prime_UTR 50.0%
AAAGGAGCTGGTGGAAGGAA+AGG - chr2_4:60621745-60621764 Msa0339490:three_prime_UTR 50.0%
CTGGTCACAGACTTCTTCCT+TGG + chr2_4:60621778-60621797 None:intergenic 50.0%
! AAGACCAGCTCTGATGGATC+TGG + chr2_4:60621797-60621816 None:intergenic 50.0%
! TAACGGCCGATTCTTCCAAC+TGG + chr2_4:60621826-60621845 None:intergenic 50.0%
GGAAGATACGCTCAACGTGT+TGG - chr2_4:60621856-60621875 Msa0339490:three_prime_UTR 50.0%
! TACGCTCAACGTGTTGGTAC+TGG - chr2_4:60621862-60621881 Msa0339490:three_prime_UTR 50.0%
GATATTCAAGAACAGCGGCG+AGG + chr2_4:60621900-60621919 None:intergenic 50.0%
GCCTTAGGCTTAGGAGACTT+TGG + chr2_4:60622231-60622250 None:intergenic 50.0%
AAGTCTCCTAAGCCTAAGGC+TGG - chr2_4:60622231-60622250 Msa0339490:intron 50.0%
GACTTTCCAGCCTTAGGCTT+AGG + chr2_4:60622240-60622259 None:intergenic 50.0%
GGCTGGAAAGTCTCCAAAGA+AGG - chr2_4:60622248-60622267 Msa0339490:intron 50.0%
CTTGCGTCCATTTCCGAGAT+TGG + chr2_4:60621712-60621731 None:intergenic 50.0%
GCAAGCACCAAGACGAAGAA+AGG - chr2_4:60621727-60621746 Msa0339490:three_prime_UTR 50.0%
ACCAAGACGAAGAAAGGAGC+TGG - chr2_4:60621733-60621752 Msa0339490:three_prime_UTR 50.0%
ACCAGCTCCTTTCTTCGTCT+TGG + chr2_4:60621737-60621756 None:intergenic 50.0%
AAGACGAAGAAAGGAGCTGG+TGG - chr2_4:60621736-60621755 Msa0339490:three_prime_UTR 50.0%
AAAGGAGCTGGTGGAAGGAA+AGG - chr2_4:60621745-60621764 Msa0339490:three_prime_UTR 50.0%
CTGGTCACAGACTTCTTCCT+TGG + chr2_4:60621778-60621797 None:intergenic 50.0%
! AAGACCAGCTCTGATGGATC+TGG + chr2_4:60621797-60621816 None:intergenic 50.0%
! TAACGGCCGATTCTTCCAAC+TGG + chr2_4:60621826-60621845 None:intergenic 50.0%
GGAAGATACGCTCAACGTGT+TGG - chr2_4:60621856-60621875 Msa0339490:three_prime_UTR 50.0%
! TACGCTCAACGTGTTGGTAC+TGG - chr2_4:60621862-60621881 Msa0339490:three_prime_UTR 50.0%
GATATTCAAGAACAGCGGCG+AGG + chr2_4:60621900-60621919 None:intergenic 50.0%
GCCTTAGGCTTAGGAGACTT+TGG + chr2_4:60622231-60622250 None:intergenic 50.0%
AAGTCTCCTAAGCCTAAGGC+TGG - chr2_4:60622231-60622250 Msa0339490:intron 50.0%
GACTTTCCAGCCTTAGGCTT+AGG + chr2_4:60622240-60622259 None:intergenic 50.0%
GGCTGGAAAGTCTCCAAAGA+AGG - chr2_4:60622248-60622267 Msa0339490:intron 50.0%
CGAAGAAAGGAGCTGGTGGA+AGG - chr2_4:60621740-60621759 Msa0339490:three_prime_UTR 55.0%
GAAGGAAAGGTGGAGGACCA+AGG - chr2_4:60621758-60621777 Msa0339490:three_prime_UTR 55.0%
GTGACCAGATCCATCAGAGC+TGG - chr2_4:60621790-60621809 Msa0339490:three_prime_UTR 55.0%
AGAACAGCGGCGAGGTAAAC+AGG + chr2_4:60621892-60621911 None:intergenic 55.0%
ACAGCCAACAACACGTGCCT+TGG + chr2_4:60622081-60622100 None:intergenic 55.0%
CGAAGAAAGGAGCTGGTGGA+AGG - chr2_4:60621740-60621759 Msa0339490:three_prime_UTR 55.0%
GAAGGAAAGGTGGAGGACCA+AGG - chr2_4:60621758-60621777 Msa0339490:three_prime_UTR 55.0%
GTGACCAGATCCATCAGAGC+TGG - chr2_4:60621790-60621809 Msa0339490:three_prime_UTR 55.0%
AGAACAGCGGCGAGGTAAAC+AGG + chr2_4:60621892-60621911 None:intergenic 55.0%
ACAGCCAACAACACGTGCCT+TGG + chr2_4:60622081-60622100 None:intergenic 55.0%
GGAGCTGGTGGAAGGAAAGG+TGG - chr2_4:60621748-60621767 Msa0339490:three_prime_UTR 60.0%
GCTGGTGGAAGGAAAGGTGG+AGG - chr2_4:60621751-60621770 Msa0339490:three_prime_UTR 60.0%
GGAGCTGGTGGAAGGAAAGG+TGG - chr2_4:60621748-60621767 Msa0339490:three_prime_UTR 60.0%
GCTGGTGGAAGGAAAGGTGG+AGG - chr2_4:60621751-60621770 Msa0339490:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 60621632 60622624 60621632 ID=Msa0339490;Name=Msa0339490
chr2_4 mRNA 60621632 60622624 60621632 ID=Msa0339490-mRNA-1;Parent=Msa0339490;Name=Msa0339490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=89|1|1|1|1|1|2|349|153
chr2_4 exon 60621632 60622232 60621632 ID=Msa0339490-mRNA-1:exon:18880;Parent=Msa0339490-mRNA-1
chr2_4 exon 60622326 60622624 60622326 ID=Msa0339490-mRNA-1:exon:18879;Parent=Msa0339490-mRNA-1
chr2_4 five_prime_UTR 60622536 60622624 60622536 ID=Msa0339490-mRNA-1:five_prime_utr;Parent=Msa0339490-mRNA-1
chr2_4 CDS 60622326 60622535 60622326 ID=Msa0339490-mRNA-1:cds;Parent=Msa0339490-mRNA-1
chr2_4 CDS 60621981 60622232 60621981 ID=Msa0339490-mRNA-1:cds;Parent=Msa0339490-mRNA-1
chr2_4 three_prime_UTR 60621632 60621980 60621632 ID=Msa0339490-mRNA-1:three_prime_utr;Parent=Msa0339490-mRNA-1
Gene Sequence

>Msa0339490

ATGGACGCAAGCACCAAGACGAAGAAAGGAGCTGGTGGAAGGAAAGGTGGAGGACCAAGGAAGAAGTCTGTGACCAGATCCATCAGAGCTGGTCTTCAATTTCCAGTTGGAAGAATCGGCCGTTACTTGAAGAAAGGAAGATACGCTCAACGTGTTGGTACTGGTGCTCCTGTTTACCTCGCCGCTGTTCTTGAATATCTCGCTGCTGAGGTTCTTGAATTGGCTGGAAATGCTGCACGTGATAACAAGAAGAATAGGATAATTCCAAGGCACGTGTTGTTGGCTGTGAGAAATGATGAAGAGCTGGGAAAATTGTTAGCTGGTGTAACAATTGCACATGGTGGTGTTCTTCCAAACATTAACCCTGTTCTTTTGCCTAAGAAGACTGAAAGGTCTACTAATGCTAGCAAGGAACCAAAGTCTCCTAAGCCTAAGGCTGGAAAGTCTCCAAAGAAGGCTTAG

Protein sequence

>Msa0339490

MDASTKTKKGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTERSTNASKEPKSPKPKAGKSPKKA*