AlfalfaGEDB | Msa0046740

M. sativa cultivar zhongmu-4 / Msa0046740

KEGG: -
GO: -
PFAM: PF06108.15

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa0046740	0.872491	3.052576e-67	-8.615850e-47
Msa0008090	Msa0046740	0.838972	2.092706e-57	-8.615850e-47
Msa0008410	Msa0046740	0.830681	2.560715e-55	-8.615850e-47
Msa0009760	Msa0046740	0.804505	2.092219e-49	-8.615850e-47
Msa0029260	Msa0046740	0.802638	5.101803e-49	-8.615850e-47
Msa0029630	Msa0046740	0.824662	7.147859e-54	-8.615850e-47
Msa0032260	Msa0046740	0.802570	5.268531e-49	-8.615850e-47
Msa0033880	Msa0046740	0.805262	1.453533e-49	-8.615850e-47
Msa0043860	Msa0046740	0.800746	1.246966e-48	-8.615850e-47
Msa0046740	Msa0056470	0.833879	4.138499e-56	-8.615850e-47
Msa0046740	Msa0064350	0.846927	1.596892e-59	-8.615850e-47
Msa0046740	Msa0064380	0.819163	1.341344e-52	-8.615850e-47
Msa0046740	Msa0068000	0.811899	5.558103e-51	-8.615850e-47
Msa0046740	Msa0068020	0.817248	3.639288e-52	-8.615850e-47
Msa0046740	Msa0069330	0.839535	1.494869e-57	-8.615850e-47
Msa0046740	Msa0076040	0.823929	1.062979e-53	-8.615850e-47
Msa0046740	Msa0079920	0.809458	1.873302e-50	-8.615850e-47
Msa0046740	Msa0082280	0.816937	4.274937e-52	-8.615850e-47
Msa0046740	Msa0083070	0.809643	1.709572e-50	-8.615850e-47
Msa0046740	Msa0090520	0.835512	1.607058e-56	-8.615850e-47
Msa0046740	Msa0091610	0.857704	1.361443e-62	-8.615850e-47
Msa0046740	Msa0093010	0.861846	7.696905e-64	-8.615850e-47
Msa0046740	Msa0096800	0.802299	5.992742e-49	-8.615850e-47
Msa0046740	Msa0104550	0.841189	5.526194e-58	-8.615850e-47
Msa0046740	Msa0115370	0.833671	4.664350e-56	-8.615850e-47
Msa0046740	Msa0115990	0.853467	2.343872e-61	-8.615850e-47
Msa0046740	Msa0123560	0.813874	2.052470e-51	-8.615850e-47
Msa0046740	Msa0125450	0.843793	1.125880e-58	-8.615850e-47
Msa0046740	Msa0125540	0.858045	1.078191e-62	-8.615850e-47
Msa0046740	Msa0127850	0.823556	1.299556e-53	-8.615850e-47
Msa0046740	Msa0128860	0.807602	4.664292e-50	-8.615850e-47
Msa0046740	Msa0137990	0.836243	1.049151e-56	-8.615850e-47
Msa0046740	Msa0139320	0.806899	6.574719e-50	-8.615850e-47
Msa0046740	Msa0140110	0.817073	3.984527e-52	-8.615850e-47
Msa0046740	Msa0140820	0.812033	5.197323e-51	-8.615850e-47
Msa0046740	Msa0150570	0.815585	8.572443e-52	-8.615850e-47
Msa0046740	Msa0159440	0.806794	6.917891e-50	-8.615850e-47
Msa0046740	Msa0169300	0.805115	1.559589e-49	-8.615850e-47
Msa0046740	Msa0169610	0.801784	7.646200e-49	-8.615850e-47
Msa0046740	Msa0174730	0.805277	1.442978e-49	-8.615850e-47
Msa0046740	Msa0174770	0.818684	1.724264e-52	-8.615850e-47
Msa0046740	Msa0177960	0.802360	5.822323e-49	-8.615850e-47
Msa0046740	Msa0181610	0.807338	5.307241e-50	-8.615850e-47
Msa0046740	Msa0183900	0.839116	1.921189e-57	-8.615850e-47
Msa0046740	Msa0191050	0.829749	4.324523e-55	-8.615850e-47
Msa0046740	Msa0195630	0.831371	1.733904e-55	-8.615850e-47
Msa0046740	Msa0199690	0.804395	2.204932e-49	-8.615850e-47
Msa0046740	Msa0199880	0.813588	2.371795e-51	-8.615850e-47
Msa0046740	Msa0217670	0.806398	8.389021e-50	-8.615850e-47
Msa0046740	Msa0229760	0.807410	5.123842e-50	-8.615850e-47
Msa0046740	Msa0233350	0.822527	2.258152e-53	-8.615850e-47
Msa0046740	Msa0237410	0.836564	8.691111e-57	-8.615850e-47
Msa0046740	Msa0244980	0.801182	1.015821e-48	-8.615850e-47
Msa0046740	Msa0249580	0.816365	5.741566e-52	-8.615850e-47
Msa0046740	Msa0257490	0.816437	5.533783e-52	-8.615850e-47
Msa0046740	Msa0267970	0.813615	2.339558e-51	-8.615850e-47
Msa0046740	Msa0269470	0.857878	1.209055e-62	-8.615850e-47
Msa0046740	Msa0280610	0.811724	6.067607e-51	-8.615850e-47
Msa0046740	Msa0281530	0.804717	1.888847e-49	-8.615850e-47
Msa0046740	Msa0300120	0.827744	1.320944e-54	-8.615850e-47
Msa0046740	Msa0304590	0.822526	2.259674e-53	-8.615850e-47
Msa0046740	Msa0304660	0.818277	2.132121e-52	-8.615850e-47
Msa0046740	Msa0311700	0.816342	5.809782e-52	-8.615850e-47
Msa0046740	Msa0331700	0.817299	3.543223e-52	-8.615850e-47
Msa0046740	Msa0369450	0.813698	2.243714e-51	-8.615850e-47
Msa0046740	Msa0376300	0.805804	1.118299e-49	-8.615850e-47
Msa0046740	Msa0376310	0.815923	7.208823e-52	-8.615850e-47
Msa0046740	Msa0380300	0.855273	7.045353e-62	-8.615850e-47
Msa0046740	Msa0385500	0.814225	1.716934e-51	-8.615850e-47
Msa0046740	Msa0387730	0.829813	4.171557e-55	-8.615850e-47
Msa0046740	Msa0414800	0.803290	3.740147e-49	-8.615850e-47
Msa0046740	Msa0415430	0.814910	1.210940e-51	-8.615850e-47
Msa0046740	Msa0423750	0.804879	1.747930e-49	-8.615850e-47
Msa0046740	Msa0444350	0.818739	1.674826e-52	-8.615850e-47
Msa0046740	Msa0470530	0.817128	3.871880e-52	-8.615850e-47
Msa0046740	Msa0481480	0.835278	1.841520e-56	-8.615850e-47
Msa0046740	Msa0484740	0.855827	4.856260e-62	-8.615850e-47
Msa0046740	Msa0485850	0.807880	4.072200e-50	-8.615850e-47
Msa0046740	Msa0521050	0.857006	2.189670e-62	-8.615850e-47
Msa0046740	Msa0524500	0.865120	7.436099e-65	-8.615850e-47
Msa0046740	Msa0542290	0.802320	5.932160e-49	-8.615850e-47
Msa0046740	Msa0547160	0.811623	6.381863e-51	-8.615850e-47
Msa0046740	Msa0552810	0.846755	1.779222e-59	-8.615850e-47
Msa0046740	Msa0556060	0.810624	1.050653e-50	-8.615850e-47
Msa0046740	Msa0559790	0.800379	1.481923e-48	-8.615850e-47
Msa0046740	Msa0580230	0.807722	4.398389e-50	-8.615850e-47
Msa0046740	Msa0580280	0.835390	1.725291e-56	-8.615850e-47
Msa0046740	Msa0581070	0.846372	2.263386e-59	-8.615850e-47
Msa0046740	Msa0581110	0.856848	2.438001e-62	-8.615850e-47
Msa0046740	Msa0610390	0.800715	1.265178e-48	-8.615850e-47
Msa0046740	Msa0613920	0.802587	5.227729e-49	-8.615850e-47
Msa0046740	Msa0641190	0.818478	1.919499e-52	-8.615850e-47
Msa0046740	Msa0642970	0.800501	1.399391e-48	-8.615850e-47
Msa0046740	Msa0647930	0.815570	8.639129e-52	-8.615850e-47
Msa0046740	Msa0647950	0.819388	1.192548e-52	-8.615850e-47
Msa0046740	Msa0650920	0.808165	3.540847e-50	-8.615850e-47
Msa0046740	Msa0651050	0.846332	2.320845e-59	-8.615850e-47
Msa0046740	Msa0661300	0.828932	6.828596e-55	-8.615850e-47
Msa0046740	Msa0662630	0.840699	7.430662e-58	-8.615850e-47
Msa0046740	Msa0663900	0.812467	4.177828e-51	-8.615850e-47
Msa0046740	Msa0666270	0.800875	1.173898e-48	-8.615850e-47
Msa0046740	Msa0669520	0.805877	1.079462e-49	-8.615850e-47
Msa0046740	Msa0687020	0.807157	5.798224e-50	-8.615850e-47
Msa0046740	Msa0687630	0.818500	1.898067e-52	-8.615850e-47
Msa0046740	Msa0689500	0.837946	3.850606e-57	-8.615850e-47
Msa0046740	Msa0692840	0.854727	1.015409e-61	-8.615850e-47
Msa0046740	Msa0692940	0.838441	2.871189e-57	-8.615850e-47
Msa0046740	Msa0696450	0.808959	2.397167e-50	-8.615850e-47
Msa0046740	Msa0697080	0.801157	1.027813e-48	-8.615850e-47
Msa0046740	Msa0706960	0.809828	1.559893e-50	-8.615850e-47
Msa0046740	Msa0708000	-0.800940	1.138291e-48	-8.615850e-47
Msa0046740	Msa0713820	0.802298	5.995212e-49	-8.615850e-47
Msa0046740	Msa0746420	0.806755	7.050407e-50	-8.615850e-47
Msa0046740	Msa0752700	0.813289	2.759569e-51	-8.615850e-47
Msa0046740	Msa0763070	0.811555	6.604095e-51	-8.615850e-47
Msa0046740	Msa0794970	0.801280	9.698720e-49	-8.615850e-47
Msa0046740	Msa0797750	0.800661	1.298161e-48	-8.615850e-47
Msa0046740	Msa0808800	0.832827	7.568282e-56	-8.615850e-47
Msa0046740	Msa0818310	0.816885	4.390580e-52	-8.615850e-47
Msa0046740	Msa0827280	0.826292	2.939044e-54	-8.615850e-47
Msa0046740	Msa0858770	0.802453	5.570521e-49	-8.615850e-47
Msa0046740	Msa0880470	0.815370	9.574439e-52	-8.615850e-47
Msa0046740	Msa0898040	0.802740	4.860823e-49	-8.615850e-47
Msa0046740	Msa0902760	0.800653	1.303160e-48	-8.615850e-47
Msa0046740	Msa0943170	0.830269	3.229212e-55	-8.615850e-47
Msa0046740	Msa0943440	0.807050	6.108830e-50	-8.615850e-47
Msa0046740	Msa0967370	0.815869	7.412196e-52	-8.615850e-47
Msa0046740	Msa0968590	0.823157	1.610960e-53	-8.615850e-47
Msa0046740	Msa0980540	0.802138	6.467274e-49	-8.615850e-47
Msa0046740	Msa1039900	0.818633	1.770253e-52	-8.615850e-47
Msa0046740	Msa1078270	0.827274	1.712377e-54	-8.615850e-47
Msa0046740	Msa1081990	0.803744	3.011406e-49	-8.615850e-47
Msa0046740	Msa1093530	0.803601	3.225111e-49	-8.615850e-47
Msa0046740	Msa1101600	0.812851	3.443247e-51	-8.615850e-47
Msa0046740	Msa1123500	0.816269	6.032509e-52	-8.615850e-47
Msa0046740	Msa1126510	0.837888	3.983166e-57	-8.615850e-47
Msa0046740	Msa1126770	0.820498	6.644828e-53	-8.615850e-47
Msa0046740	Msa1126830	0.854190	1.451516e-61	-8.615850e-47
Msa0046740	Msa1127890	0.804159	2.469452e-49	-8.615850e-47
Msa0046740	Msa1128600	0.803034	4.227174e-49	-8.615850e-47
Msa0046740	Msa1130980	0.866708	2.340787e-65	-8.615850e-47
Msa0046740	Msa1134110	0.800824	1.202035e-48	-8.615850e-47
Msa0046740	Msa1165780	0.816374	5.716304e-52	-8.615850e-47
Msa0046740	Msa1165870	0.818239	2.174394e-52	-8.615850e-47
Msa0046740	Msa1165940	0.864498	1.164937e-64	-8.615850e-47
Msa0046740	Msa1166860	0.821175	4.641761e-53	-8.615850e-47
Msa0046740	Msa1169770	0.827311	1.678218e-54	-8.615850e-47
Msa0046740	Msa1184370	0.844760	6.193514e-59	-8.615850e-47
Msa0046740	Msa1186130	0.815620	8.420789e-52	-8.615850e-47
Msa0046740	Msa1194230	0.808908	2.458160e-50	-8.615850e-47
Msa0046740	Msa1207270	0.802106	6.566372e-49	-8.615850e-47
Msa0046740	Msa1218600	0.819773	9.739235e-53	-8.615850e-47
Msa0046740	Msa1227690	0.833463	5.256149e-56	-8.615850e-47
Msa0046740	Msa1239410	0.800637	1.312832e-48	-8.615850e-47
Msa0046740	Msa1239910	0.827177	1.806447e-54	-8.615850e-47
Msa0046740	Msa1244600	0.801564	8.484084e-49	-8.615850e-47
Msa0046740	Msa1251160	0.842794	2.079973e-58	-8.615850e-47
Msa0046740	Msa1256470	0.869490	2.977883e-66	-8.615850e-47
Msa0046740	Msa1257510	0.810775	9.746080e-51	-8.615850e-47
Msa0046740	Msa1283170	0.813602	2.355935e-51	-8.615850e-47
Msa0046740	Msa1290450	0.819781	9.700592e-53	-8.615850e-47
Msa0046740	Msa1295110	0.808066	3.716779e-50	-8.615850e-47
Msa0046740	Msa1295490	-0.800054	1.725587e-48	-8.615850e-47
Msa0046740	Msa1296830	0.816568	5.172386e-52	-8.615850e-47
Msa0046740	Msa1304820	0.818647	1.757486e-52	-8.615850e-47
Msa0046740	Msa1305710	0.835425	1.691102e-56	-8.615850e-47
Msa0046740	Msa1307950	0.845345	4.303589e-59	-8.615850e-47
Msa0046740	Msa1346730	0.815809	7.642439e-52	-8.615850e-47
Msa0046740	Msa1356610	0.808241	3.410967e-50	-8.615850e-47
Msa0046740	Msa1362420	0.856694	2.705559e-62	-8.615850e-47
Msa0046740	Msa1367590	0.866935	1.981756e-65	-8.615850e-47
Msa0046740	Msa1370860	0.823885	1.088451e-53	-8.615850e-47
Msa0046740	Msa1376650	0.858249	9.375869e-63	-8.615850e-47
Msa0046740	Msa1379760	0.800098	1.690346e-48	-8.615850e-47
Msa0046740	Msa1381350	0.817190	3.750134e-52	-8.615850e-47
Msa0046740	Msa1382780	0.819064	1.413127e-52	-8.615850e-47
Msa0046740	Msa1413260	0.846188	2.541572e-59	-8.615850e-47
Msa0046740	Msa1418340	0.868578	5.883109e-66	-8.615850e-47
Msa0046740	Msa1421290	0.810405	1.171939e-50	-8.615850e-47
Msa0046740	Msa1421560	0.813705	2.235897e-51	-8.615850e-47
Msa0046740	Msa1422580	0.826685	2.368868e-54	-8.615850e-47
Msa0046740	Msa1423910	0.800003	1.766753e-48	-8.615850e-47
Msa0046740	Msa1425670	0.841714	4.018933e-58	-8.615850e-47
Msa0046740	Msa1442850	0.804485	2.112302e-49	-8.615850e-47
Msa0046740	Msa1443780	0.802420	5.657741e-49	-8.615850e-47
Msa0046740	Msa1450280	0.812602	3.904267e-51	-8.615850e-47
Msa0046740	Msa1451560	0.801414	9.107958e-49	-8.615850e-47
Msa0046740	Msa1456050	0.809103	2.232642e-50	-8.615850e-47
Msa0046740	Msa1461280	0.814865	1.239448e-51	-8.615850e-47
Msa0046740	Msa1462290	0.806568	7.724093e-50	-8.615850e-47
Msa0046740	Msa1465080	0.851496	8.544887e-61	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0046740	MtrunA17_Chr7g0270321	96.667	120	4	0	1	120	1	120	2.02e-81	234

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0046740	AT4G01897.1	63.248	117	43	0	3	119	5	121	3.10e-55	168

Find 45 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGCGAAACATTCTGTGGTTT+TGG	0.224780	1_1:+79076413	None:intergenic
CCTGATCTAGTTTGCTAAGA+TGG	0.325847	1_1:+79078167	None:intergenic
CAAAGAAATGGGTCCACTTT+CGG	0.360708	1_1:-79078220	Msa0046740:CDS
TCCTCAGCTTGGCGATGGTT+TGG	0.387394	1_1:-79076923	Msa0046740:intron
TGGGAAGAATTGCAAAGAAA+TGG	0.392074	1_1:-79078232	Msa0046740:CDS
ATGTTATACTGTTATGTAAC+GGG	0.400862	1_1:-79078335	Msa0046740:five_prime_UTR
GAAGAAGAGTACCTGGGTAC+TGG	0.402502	1_1:-79076374	Msa0046740:three_prime_UTR
TCTTCAGATTGATGCTAAGA+AGG	0.429001	1_1:-79077960	Msa0046740:intron
CCATCTTAGCAAACTAGATC+AGG	0.463319	1_1:-79078167	Msa0046740:intron
TTTCTTGTGATGTGTGTGTA+AGG	0.463320	1_1:-79076709	Msa0046740:three_prime_UTR
GTCAAGTTCACCACCGAAAG+TGG	0.465358	1_1:+79078207	None:intergenic
GATGATCAAGGTTTGTCTGT+TGG	0.475434	1_1:+79076658	None:intergenic
CTATTTCCTCAGCTTGGCGA+TGG	0.484872	1_1:-79076928	Msa0046740:intron
AATCAGCACGGCGAAGGAAT+GGG	0.486850	1_1:-79078251	Msa0046740:CDS
GGGAAGAATTGCAAAGAAAT+GGG	0.488668	1_1:-79078231	Msa0046740:CDS
TGAAATTTGTGATGTAGAGA+AGG	0.489883	1_1:+79076463	None:intergenic
GAATCAGCACGGCGAAGGAA+TGG	0.494049	1_1:-79078252	Msa0046740:CDS
AAATAGTACAGTATAATCAT+TGG	0.498195	1_1:+79076564	None:intergenic
TGTTTCGCACTTCAAATGAC+AGG	0.500818	1_1:-79076399	Msa0046740:three_prime_UTR
GAGAAGCTGTCTCTTTCAAA+TGG	0.500982	1_1:-79076805	Msa0046740:CDS
TCATTAAGAAAAGATGATCA+AGG	0.501413	1_1:+79076646	None:intergenic
AGCTGTCTCTTTCAAATGGT+CGG	0.507865	1_1:-79076801	Msa0046740:CDS
AAGAAGAGTACCTGGGTACT+GGG	0.515971	1_1:-79076373	Msa0046740:three_prime_UTR
AGTTATTGACATGCTACTGT+TGG	0.527145	1_1:-79076607	Msa0046740:three_prime_UTR
GAAATTTGTGATGTAGAGAA+GGG	0.537730	1_1:+79076464	None:intergenic
TCTTAGCATCAATCTGAAGA+AGG	0.553114	1_1:+79077963	None:intergenic
CATGTTATACTGTTATGTAA+CGG	0.560294	1_1:-79078336	Msa0046740:five_prime_UTR
TGGTTTGGTGTATGAAATTG+TGG	0.564813	1_1:-79076908	Msa0046740:CDS
ACAGGGTGAAGAAGAGTACC+TGG	0.571202	1_1:-79076381	Msa0046740:three_prime_UTR
GTGACCACATCTAGAGAGAG+AGG	0.580003	1_1:+79076835	None:intergenic
GTACAGAATCAGCACGGCGA+AGG	0.581959	1_1:-79078257	Msa0046740:CDS
ATTGCAGGTTCGATCAACGT+TGG	0.585116	1_1:-79078020	Msa0046740:intron
TATCCCTCTCTCTCTAGATG+TGG	0.592426	1_1:-79076839	Msa0046740:CDS
GAAAATGACTGACCTACCGC+AGG	0.621312	1_1:-79078387	Msa0046740:five_prime_UTR
TTGAAGTGCGAAACATTCTG+TGG	0.633156	1_1:+79076407	None:intergenic
TTGGTGTATGAAATTGTGGA+CGG	0.638694	1_1:-79076904	Msa0046740:CDS
AGAAATGGGTCCACTTTCGG+TGG	0.639639	1_1:-79078217	Msa0046740:CDS
TCTAGATGTGGTCACAAAAG+CGG	0.643197	1_1:-79076827	Msa0046740:CDS
AGAGGGATAAAGCTTCGAGA+AGG	0.643890	1_1:+79076853	None:intergenic
TTGCAAAATAGTCCTGCGGT+AGG	0.648646	1_1:+79078375	None:intergenic
TGACCACATCTAGAGAGAGA+GGG	0.654116	1_1:+79076836	None:intergenic
GTTTCGCACTTCAAATGACA+GGG	0.655751	1_1:-79076398	Msa0046740:three_prime_UTR
GGCAGGATATCCCAGTACCC+AGG	0.668557	1_1:+79076363	None:intergenic
GAAATTGCAAAATAGTCCTG+CGG	0.705792	1_1:+79078371	None:intergenic
CAGGGTGAAGAAGAGTACCT+GGG	0.721065	1_1:-79076380	Msa0046740:three_prime_UTR

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TATAATTATTTTATTATTGC+AGG	-	chr1_1:79076746-79076765	Msa0046740:three_prime_UTR	10.0%
!!!	TATAATTATTTTATTATTGC+AGG	-	chr1_1:79076746-79076765	Msa0046740:three_prime_UTR	10.0%
!!	TAATTAAAAAACATGCTTAT+TGG	-	chr1_1:79076909-79076928	Msa0046740:CDS	15.0%
!!!	GTTTCTTTTACTATAAATAT+AGG	+	chr1_1:79077436-79077455	None:intergenic	15.0%
!!	CACAGTTATTTATTATTATT+AGG	-	chr1_1:79077770-79077789	Msa0046740:intron	15.0%
!!	TAATTAAAAAACATGCTTAT+TGG	-	chr1_1:79076909-79076928	Msa0046740:CDS	15.0%
!!!	GTTTCTTTTACTATAAATAT+AGG	+	chr1_1:79077436-79077455	None:intergenic	15.0%
!!	CACAGTTATTTATTATTATT+AGG	-	chr1_1:79077770-79077789	Msa0046740:intron	15.0%
!!!	TAAAAAAAAGCATAGTGAAA+GGG	+	chr1_1:79076860-79076879	None:intergenic	20.0%
!!!	TTAAAAAAAAGCATAGTGAA+AGG	+	chr1_1:79076861-79076880	None:intergenic	20.0%
!!!	CAGATTTGTTACAATTTTAT+GGG	+	chr1_1:79077460-79077479	None:intergenic	20.0%
!!!	TTTTTCAGAAACGTATTTTT+GGG	+	chr1_1:79077484-79077503	None:intergenic	20.0%
!!!	ATTTTTCAGAAACGTATTTT+TGG	+	chr1_1:79077485-79077504	None:intergenic	20.0%
!!	AAATAGTACAGTATAATCAT+TGG	+	chr1_1:79078220-79078239	None:intergenic	20.0%
!!!	GTTACATTTTTTTTTTTGAG+AGG	+	chr1_1:79078286-79078305	None:intergenic	20.0%
!!!	TAAAAAAAAGCATAGTGAAA+GGG	+	chr1_1:79076860-79076879	None:intergenic	20.0%
!!!	TTAAAAAAAAGCATAGTGAA+AGG	+	chr1_1:79076861-79076880	None:intergenic	20.0%
!!!	CAGATTTGTTACAATTTTAT+GGG	+	chr1_1:79077460-79077479	None:intergenic	20.0%
!!!	TTTTTCAGAAACGTATTTTT+GGG	+	chr1_1:79077484-79077503	None:intergenic	20.0%
!!!	ATTTTTCAGAAACGTATTTT+TGG	+	chr1_1:79077485-79077504	None:intergenic	20.0%
!!	AAATAGTACAGTATAATCAT+TGG	+	chr1_1:79078220-79078239	None:intergenic	20.0%
!!!	GTTACATTTTTTTTTTTGAG+AGG	+	chr1_1:79078286-79078305	None:intergenic	20.0%
!	CATGTTATACTGTTATGTAA+CGG	-	chr1_1:79076445-79076464	Msa0046740:three_prime_UTR	25.0%
!	ATGTTATACTGTTATGTAAC+GGG	-	chr1_1:79076446-79076465	Msa0046740:three_prime_UTR	25.0%
!!!	TATTAGAAAAGTATCTGTTG+CGG	-	chr1_1:79076945-79076964	Msa0046740:intron	25.0%
!	GTTCTATTCACTTTGATTAT+TGG	+	chr1_1:79077033-79077052	None:intergenic	25.0%
!!!	CCAGATTTGTTACAATTTTA+TGG	+	chr1_1:79077461-79077480	None:intergenic	25.0%
!	CCATAAAATTGTAACAAATC+TGG	-	chr1_1:79077458-79077477	Msa0046740:intron	25.0%
!!	TTTCAGCAAACATCAATTTT+TGG	-	chr1_1:79077607-79077626	Msa0046740:intron	25.0%
!	TTGATTCAACTAAAATCTGA+AGG	-	chr1_1:79077671-79077690	Msa0046740:intron	25.0%
!	TCATTAAGAAAAGATGATCA+AGG	+	chr1_1:79078138-79078157	None:intergenic	25.0%
!!	TGATCATCTTTTCTTAATGA+AGG	-	chr1_1:79078138-79078157	Msa0046740:intron	25.0%
!	CATGTTATACTGTTATGTAA+CGG	-	chr1_1:79076445-79076464	Msa0046740:three_prime_UTR	25.0%
!	ATGTTATACTGTTATGTAAC+GGG	-	chr1_1:79076446-79076465	Msa0046740:three_prime_UTR	25.0%
!!!	TATTAGAAAAGTATCTGTTG+CGG	-	chr1_1:79076945-79076964	Msa0046740:intron	25.0%
!	GTTCTATTCACTTTGATTAT+TGG	+	chr1_1:79077033-79077052	None:intergenic	25.0%
!!!	CCAGATTTGTTACAATTTTA+TGG	+	chr1_1:79077461-79077480	None:intergenic	25.0%
!	CCATAAAATTGTAACAAATC+TGG	-	chr1_1:79077458-79077477	Msa0046740:intron	25.0%
!!	TTTCAGCAAACATCAATTTT+TGG	-	chr1_1:79077607-79077626	Msa0046740:intron	25.0%
!	TTGATTCAACTAAAATCTGA+AGG	-	chr1_1:79077671-79077690	Msa0046740:intron	25.0%
!	TCATTAAGAAAAGATGATCA+AGG	+	chr1_1:79078138-79078157	None:intergenic	25.0%
!!	TGATCATCTTTTCTTAATGA+AGG	-	chr1_1:79078138-79078157	Msa0046740:intron	25.0%
!!!	ATTGTGCACTATTTTGAGTT+TGG	-	chr1_1:79076372-79076391	Msa0046740:three_prime_UTR	30.0%
!	ATGTAACGGGAAAAATAACA+CGG	-	chr1_1:79076459-79076478	Msa0046740:three_prime_UTR	30.0%
	TATAAGTCGCTTCATTCATT+CGG	-	chr1_1:79076704-79076723	Msa0046740:three_prime_UTR	30.0%
!	TTACTCATCATATAGTGGAA+CGG	+	chr1_1:79077179-79077198	None:intergenic	30.0%
	TAACGTTACTCATCATATAG+TGG	+	chr1_1:79077184-79077203	None:intergenic	30.0%
	TTGTATAGAGTTTGTCTCTT+TGG	+	chr1_1:79077339-79077358	None:intergenic	30.0%
!!	AGTGTAAACTTTGAGATAGA+GGG	+	chr1_1:79077404-79077423	None:intergenic	30.0%
	AAAATAACAGCACGCAAAAT+CGG	-	chr1_1:79077500-79077519	Msa0046740:intron	30.0%
!	TGTTTGCTGAAAGTACAAAT+CGG	+	chr1_1:79077599-79077618	None:intergenic	30.0%
	TTGTGAAAGTGACTCAAAAT+TGG	+	chr1_1:79077643-79077662	None:intergenic	30.0%
!!	AATAGCTTCCCTCATTTTTA+TGG	-	chr1_1:79077904-79077923	Msa0046740:intron	30.0%
!!	ATAGCTTCCCTCATTTTTAT+GGG	-	chr1_1:79077905-79077924	Msa0046740:intron	30.0%
!!!	CTGTTGGAATTTTAAGTTTC+TGG	-	chr1_1:79078190-79078209	Msa0046740:CDS	30.0%
	GAAATTTGTGATGTAGAGAA+GGG	+	chr1_1:79078320-79078339	None:intergenic	30.0%
	TGAAATTTGTGATGTAGAGA+AGG	+	chr1_1:79078321-79078340	None:intergenic	30.0%
!!!	ATTGTGCACTATTTTGAGTT+TGG	-	chr1_1:79076372-79076391	Msa0046740:three_prime_UTR	30.0%
!	ATGTAACGGGAAAAATAACA+CGG	-	chr1_1:79076459-79076478	Msa0046740:three_prime_UTR	30.0%
	TATAAGTCGCTTCATTCATT+CGG	-	chr1_1:79076704-79076723	Msa0046740:three_prime_UTR	30.0%
!	TTACTCATCATATAGTGGAA+CGG	+	chr1_1:79077179-79077198	None:intergenic	30.0%
	TAACGTTACTCATCATATAG+TGG	+	chr1_1:79077184-79077203	None:intergenic	30.0%
	TTGTATAGAGTTTGTCTCTT+TGG	+	chr1_1:79077339-79077358	None:intergenic	30.0%
!!	AGTGTAAACTTTGAGATAGA+GGG	+	chr1_1:79077404-79077423	None:intergenic	30.0%
	AAAATAACAGCACGCAAAAT+CGG	-	chr1_1:79077500-79077519	Msa0046740:intron	30.0%
!	TGTTTGCTGAAAGTACAAAT+CGG	+	chr1_1:79077599-79077618	None:intergenic	30.0%
	TTGTGAAAGTGACTCAAAAT+TGG	+	chr1_1:79077643-79077662	None:intergenic	30.0%
!!	AATAGCTTCCCTCATTTTTA+TGG	-	chr1_1:79077904-79077923	Msa0046740:intron	30.0%
!!	ATAGCTTCCCTCATTTTTAT+GGG	-	chr1_1:79077905-79077924	Msa0046740:intron	30.0%
!!!	CTGTTGGAATTTTAAGTTTC+TGG	-	chr1_1:79078190-79078209	Msa0046740:CDS	30.0%
	GAAATTTGTGATGTAGAGAA+GGG	+	chr1_1:79078320-79078339	None:intergenic	30.0%
	TGAAATTTGTGATGTAGAGA+AGG	+	chr1_1:79078321-79078340	None:intergenic	30.0%
	GAAATTGCAAAATAGTCCTG+CGG	+	chr1_1:79076413-79076432	None:intergenic	35.0%
!	TGTAACGGGAAAAATAACAC+GGG	-	chr1_1:79076460-79076479	Msa0046740:three_prime_UTR	35.0%
!	TTTTGTGTACAGAATCAGCA+CGG	-	chr1_1:79076518-79076537	Msa0046740:three_prime_UTR	35.0%
	TGGGAAGAATTGCAAAGAAA+TGG	-	chr1_1:79076549-79076568	Msa0046740:three_prime_UTR	35.0%
	GGGAAGAATTGCAAAGAAAT+GGG	-	chr1_1:79076550-79076569	Msa0046740:three_prime_UTR	35.0%
	TCTTAGCATCAATCTGAAGA+AGG	+	chr1_1:79076821-79076840	None:intergenic	35.0%
	TCTTCAGATTGATGCTAAGA+AGG	-	chr1_1:79076821-79076840	Msa0046740:CDS	35.0%
	ACCAATAACAACTTGATGTG+TGG	-	chr1_1:79076987-79077006	Msa0046740:intron	35.0%
!	TCCACACATCAAGTTGTTAT+TGG	+	chr1_1:79076991-79077010	None:intergenic	35.0%
!!!	GCTGTGTTGTTTTCTACTTT+TGG	+	chr1_1:79077071-79077090	None:intergenic	35.0%
	AAGAATCTGTTTACCCAGTT+CGG	-	chr1_1:79077117-79077136	Msa0046740:intron	35.0%
	GAGTAACGTTACAAAAGAGA+TGG	-	chr1_1:79077193-79077212	Msa0046740:intron	35.0%
	ACTATTAGGATTGAGTCTCT+TGG	+	chr1_1:79077275-79077294	None:intergenic	35.0%
	AATCCTAATAGTGTTTCCCA+AGG	-	chr1_1:79077283-79077302	Msa0046740:intron	35.0%
!!	GAACAAACACTAGGTTTTGA+GGG	+	chr1_1:79077317-79077336	None:intergenic	35.0%
	GAAAGGCAACAACAAAACTA+GGG	+	chr1_1:79077363-79077382	None:intergenic	35.0%
	AGAAAGGCAACAACAAAACT+AGG	+	chr1_1:79077364-79077383	None:intergenic	35.0%
!!	TGTAAACTTTGAGATAGAGG+GGG	+	chr1_1:79077402-79077421	None:intergenic	35.0%
!!	GTGTAAACTTTGAGATAGAG+GGG	+	chr1_1:79077403-79077422	None:intergenic	35.0%
!!	CAGTGTAAACTTTGAGATAG+AGG	+	chr1_1:79077405-79077424	None:intergenic	35.0%
	AAATAACAGCACGCAAAATC+GGG	-	chr1_1:79077501-79077520	Msa0046740:intron	35.0%
!	CAGTTTGGTACTGGAAAAAT+CGG	+	chr1_1:79077550-79077569	None:intergenic	35.0%
!	TTTGCTGAAAGTACAAATCG+GGG	+	chr1_1:79077597-79077616	None:intergenic	35.0%
!	GTTTGCTGAAAGTACAAATC+GGG	+	chr1_1:79077598-79077617	None:intergenic	35.0%
	AGTGACTCAAAATTGGAGTT+TGG	+	chr1_1:79077636-79077655	None:intergenic	35.0%
!!	TGGTTTGGTGTATGAAATTG+TGG	-	chr1_1:79077873-79077892	Msa0046740:intron	35.0%
	TTGGTGTATGAAATTGTGGA+CGG	-	chr1_1:79077877-79077896	Msa0046740:intron	35.0%
	TTTCTTGTGATGTGTGTGTA+AGG	-	chr1_1:79078072-79078091	Msa0046740:intron	35.0%
	AGTTATTGACATGCTACTGT+TGG	-	chr1_1:79078174-79078193	Msa0046740:CDS	35.0%
	CAAAATAGTGCACAATAGCA+AGG	+	chr1_1:79076368-79076387	None:intergenic	35.0%
	GAAATTGCAAAATAGTCCTG+CGG	+	chr1_1:79076413-79076432	None:intergenic	35.0%
!	TGTAACGGGAAAAATAACAC+GGG	-	chr1_1:79076460-79076479	Msa0046740:three_prime_UTR	35.0%
!	TTTTGTGTACAGAATCAGCA+CGG	-	chr1_1:79076518-79076537	Msa0046740:three_prime_UTR	35.0%
	TGGGAAGAATTGCAAAGAAA+TGG	-	chr1_1:79076549-79076568	Msa0046740:three_prime_UTR	35.0%
	GGGAAGAATTGCAAAGAAAT+GGG	-	chr1_1:79076550-79076569	Msa0046740:three_prime_UTR	35.0%
	TCTTAGCATCAATCTGAAGA+AGG	+	chr1_1:79076821-79076840	None:intergenic	35.0%
	TCTTCAGATTGATGCTAAGA+AGG	-	chr1_1:79076821-79076840	Msa0046740:CDS	35.0%
	ACCAATAACAACTTGATGTG+TGG	-	chr1_1:79076987-79077006	Msa0046740:intron	35.0%
!	TCCACACATCAAGTTGTTAT+TGG	+	chr1_1:79076991-79077010	None:intergenic	35.0%
!!!	GCTGTGTTGTTTTCTACTTT+TGG	+	chr1_1:79077071-79077090	None:intergenic	35.0%
	AAGAATCTGTTTACCCAGTT+CGG	-	chr1_1:79077117-79077136	Msa0046740:intron	35.0%
	GAGTAACGTTACAAAAGAGA+TGG	-	chr1_1:79077193-79077212	Msa0046740:intron	35.0%
	ACTATTAGGATTGAGTCTCT+TGG	+	chr1_1:79077275-79077294	None:intergenic	35.0%
	AATCCTAATAGTGTTTCCCA+AGG	-	chr1_1:79077283-79077302	Msa0046740:intron	35.0%
!!	GAACAAACACTAGGTTTTGA+GGG	+	chr1_1:79077317-79077336	None:intergenic	35.0%
	GAAAGGCAACAACAAAACTA+GGG	+	chr1_1:79077363-79077382	None:intergenic	35.0%
	AGAAAGGCAACAACAAAACT+AGG	+	chr1_1:79077364-79077383	None:intergenic	35.0%
!!	TGTAAACTTTGAGATAGAGG+GGG	+	chr1_1:79077402-79077421	None:intergenic	35.0%
!!	GTGTAAACTTTGAGATAGAG+GGG	+	chr1_1:79077403-79077422	None:intergenic	35.0%
!!	CAGTGTAAACTTTGAGATAG+AGG	+	chr1_1:79077405-79077424	None:intergenic	35.0%
	AAATAACAGCACGCAAAATC+GGG	-	chr1_1:79077501-79077520	Msa0046740:intron	35.0%
!	CAGTTTGGTACTGGAAAAAT+CGG	+	chr1_1:79077550-79077569	None:intergenic	35.0%
!	TTTGCTGAAAGTACAAATCG+GGG	+	chr1_1:79077597-79077616	None:intergenic	35.0%
!	GTTTGCTGAAAGTACAAATC+GGG	+	chr1_1:79077598-79077617	None:intergenic	35.0%
	AGTGACTCAAAATTGGAGTT+TGG	+	chr1_1:79077636-79077655	None:intergenic	35.0%
!!	TGGTTTGGTGTATGAAATTG+TGG	-	chr1_1:79077873-79077892	Msa0046740:intron	35.0%
	TTGGTGTATGAAATTGTGGA+CGG	-	chr1_1:79077877-79077896	Msa0046740:intron	35.0%
	TTTCTTGTGATGTGTGTGTA+AGG	-	chr1_1:79078072-79078091	Msa0046740:intron	35.0%
	AGTTATTGACATGCTACTGT+TGG	-	chr1_1:79078174-79078193	Msa0046740:CDS	35.0%
!	GTAACGGGAAAAATAACACG+GGG	-	chr1_1:79076461-79076480	Msa0046740:three_prime_UTR	40.0%
	TAACGGGAAAAATAACACGG+GGG	-	chr1_1:79076462-79076481	Msa0046740:three_prime_UTR	40.0%
	CAAAGAAATGGGTCCACTTT+CGG	-	chr1_1:79076561-79076580	Msa0046740:three_prime_UTR	40.0%
!!	CCTGATCTAGTTTGCTAAGA+TGG	+	chr1_1:79076617-79076636	None:intergenic	40.0%
	CCATCTTAGCAAACTAGATC+AGG	-	chr1_1:79076614-79076633	Msa0046740:three_prime_UTR	40.0%
!	TCATCATATAGTGGAACGGA+GGG	+	chr1_1:79077175-79077194	None:intergenic	40.0%
	AGGATTGAGTCTCTTGGTTA+CGG	+	chr1_1:79077269-79077288	None:intergenic	40.0%
	TCACCTTGGGAAACACTATT+AGG	+	chr1_1:79077289-79077308	None:intergenic	40.0%
!	TTTGAGGGTTGATTCACCTT+GGG	+	chr1_1:79077302-79077321	None:intergenic	40.0%
!!	TTTTGAGGGTTGATTCACCT+TGG	+	chr1_1:79077303-79077322	None:intergenic	40.0%
!	GGAACAAACACTAGGTTTTG+AGG	+	chr1_1:79077318-79077337	None:intergenic	40.0%
!!	GTCTCTTTGGAACAAACACT+AGG	+	chr1_1:79077326-79077345	None:intergenic	40.0%
	GCTGAAACAAGGGTTTAGAA+AGG	+	chr1_1:79077380-79077399	None:intergenic	40.0%
	GACTCAAAATTGGAGTTTGG+AGG	+	chr1_1:79077633-79077652	None:intergenic	40.0%
	GAGAAGGCCCATAAAAATGA+GGG	+	chr1_1:79077915-79077934	None:intergenic	40.0%
	TCTAGATGTGGTCACAAAAG+CGG	-	chr1_1:79077954-79077973	Msa0046740:intron	40.0%
	GAGAAGCTGTCTCTTTCAAA+TGG	-	chr1_1:79077976-79077995	Msa0046740:CDS	40.0%
	AGCTGTCTCTTTCAAATGGT+CGG	-	chr1_1:79077980-79077999	Msa0046740:CDS	40.0%
	GATGATCAAGGTTTGTCTGT+TGG	+	chr1_1:79078126-79078145	None:intergenic	40.0%
!!	CGAAACATTCTGTGGTTTTG+GGG	+	chr1_1:79078369-79078388	None:intergenic	40.0%
!	GCGAAACATTCTGTGGTTTT+GGG	+	chr1_1:79078370-79078389	None:intergenic	40.0%
!	TGCGAAACATTCTGTGGTTT+TGG	+	chr1_1:79078371-79078390	None:intergenic	40.0%
	TTGAAGTGCGAAACATTCTG+TGG	+	chr1_1:79078377-79078396	None:intergenic	40.0%
	TGTTTCGCACTTCAAATGAC+AGG	-	chr1_1:79078382-79078401	Msa0046740:five_prime_UTR	40.0%
	GTTTCGCACTTCAAATGACA+GGG	-	chr1_1:79078383-79078402	Msa0046740:five_prime_UTR	40.0%
!	GTAACGGGAAAAATAACACG+GGG	-	chr1_1:79076461-79076480	Msa0046740:three_prime_UTR	40.0%
	TAACGGGAAAAATAACACGG+GGG	-	chr1_1:79076462-79076481	Msa0046740:three_prime_UTR	40.0%
	CAAAGAAATGGGTCCACTTT+CGG	-	chr1_1:79076561-79076580	Msa0046740:three_prime_UTR	40.0%
!!	CCTGATCTAGTTTGCTAAGA+TGG	+	chr1_1:79076617-79076636	None:intergenic	40.0%
	CCATCTTAGCAAACTAGATC+AGG	-	chr1_1:79076614-79076633	Msa0046740:three_prime_UTR	40.0%
!	TCATCATATAGTGGAACGGA+GGG	+	chr1_1:79077175-79077194	None:intergenic	40.0%
	AGGATTGAGTCTCTTGGTTA+CGG	+	chr1_1:79077269-79077288	None:intergenic	40.0%
	TCACCTTGGGAAACACTATT+AGG	+	chr1_1:79077289-79077308	None:intergenic	40.0%
!	TTTGAGGGTTGATTCACCTT+GGG	+	chr1_1:79077302-79077321	None:intergenic	40.0%
!!	TTTTGAGGGTTGATTCACCT+TGG	+	chr1_1:79077303-79077322	None:intergenic	40.0%
!	GGAACAAACACTAGGTTTTG+AGG	+	chr1_1:79077318-79077337	None:intergenic	40.0%
!!	GTCTCTTTGGAACAAACACT+AGG	+	chr1_1:79077326-79077345	None:intergenic	40.0%
	GCTGAAACAAGGGTTTAGAA+AGG	+	chr1_1:79077380-79077399	None:intergenic	40.0%
	GACTCAAAATTGGAGTTTGG+AGG	+	chr1_1:79077633-79077652	None:intergenic	40.0%
	GAGAAGGCCCATAAAAATGA+GGG	+	chr1_1:79077915-79077934	None:intergenic	40.0%
	TCTAGATGTGGTCACAAAAG+CGG	-	chr1_1:79077954-79077973	Msa0046740:intron	40.0%
	GAGAAGCTGTCTCTTTCAAA+TGG	-	chr1_1:79077976-79077995	Msa0046740:CDS	40.0%
	AGCTGTCTCTTTCAAATGGT+CGG	-	chr1_1:79077980-79077999	Msa0046740:CDS	40.0%
	GATGATCAAGGTTTGTCTGT+TGG	+	chr1_1:79078126-79078145	None:intergenic	40.0%
!!	CGAAACATTCTGTGGTTTTG+GGG	+	chr1_1:79078369-79078388	None:intergenic	40.0%
!	GCGAAACATTCTGTGGTTTT+GGG	+	chr1_1:79078370-79078389	None:intergenic	40.0%
!	TGCGAAACATTCTGTGGTTT+TGG	+	chr1_1:79078371-79078390	None:intergenic	40.0%
	TTGAAGTGCGAAACATTCTG+TGG	+	chr1_1:79078377-79078396	None:intergenic	40.0%
	TGTTTCGCACTTCAAATGAC+AGG	-	chr1_1:79078382-79078401	Msa0046740:five_prime_UTR	40.0%
	GTTTCGCACTTCAAATGACA+GGG	-	chr1_1:79078383-79078402	Msa0046740:five_prime_UTR	40.0%
	TTGCAAAATAGTCCTGCGGT+AGG	+	chr1_1:79076409-79076428	None:intergenic	45.0%
	GAAAAATAACACGGGGGAGT+GGG	-	chr1_1:79076468-79076487	Msa0046740:three_prime_UTR	45.0%
	ATTGCAGGTTCGATCAACGT+TGG	-	chr1_1:79076761-79076780	Msa0046740:exon	45.0%
	ACAACTTGATGTGTGGAGCA+AGG	-	chr1_1:79076994-79077013	Msa0046740:intron	45.0%
	CAACTTGATGTGTGGAGCAA+GGG	-	chr1_1:79076995-79077014	Msa0046740:intron	45.0%
	AGGTCAATTTGGACCGAACT+GGG	+	chr1_1:79077133-79077152	None:intergenic	45.0%
	TAGGTCAATTTGGACCGAAC+TGG	+	chr1_1:79077134-79077153	None:intergenic	45.0%
	GGTCCAAATTGACCTAGTCT+GGG	-	chr1_1:79077138-79077157	Msa0046740:intron	45.0%
	GTCCAAATTGACCTAGTCTG+GGG	-	chr1_1:79077139-79077158	Msa0046740:intron	45.0%
	TCCAAATTGACCTAGTCTGG+GGG	-	chr1_1:79077140-79077159	Msa0046740:intron	45.0%
!	CTCATCATATAGTGGAACGG+AGG	+	chr1_1:79077176-79077195	None:intergenic	45.0%
	GGATTTGGGTAGAATTAGGC+GGG	+	chr1_1:79077236-79077255	None:intergenic	45.0%
	GGGATTTGGGTAGAATTAGG+CGG	+	chr1_1:79077237-79077256	None:intergenic	45.0%
	GCTGGGATTTGGGTAGAATT+AGG	+	chr1_1:79077240-79077259	None:intergenic	45.0%
	GGATTGAGTCTCTTGGTTAC+GGG	+	chr1_1:79077268-79077287	None:intergenic	45.0%
	CTCCCAAAGACAGCCAAAAT+CGG	-	chr1_1:79077570-79077589	Msa0046740:intron	45.0%
	TCCCAAAGACAGCCAAAATC+GGG	-	chr1_1:79077571-79077590	Msa0046740:intron	45.0%
!!	GCTATGCTATTTCCTCAGCT+TGG	-	chr1_1:79077847-79077866	Msa0046740:intron	45.0%
	CGAGAAGGCCCATAAAAATG+AGG	+	chr1_1:79077916-79077935	None:intergenic	45.0%
	AGAGGGATAAAGCTTCGAGA+AGG	+	chr1_1:79077931-79077950	None:intergenic	45.0%
	TATCCCTCTCTCTCTAGATG+TGG	-	chr1_1:79077942-79077961	Msa0046740:intron	45.0%
	TGACCACATCTAGAGAGAGA+GGG	+	chr1_1:79077948-79077967	None:intergenic	45.0%
!!	AAGAAGAGTACCTGGGTACT+GGG	-	chr1_1:79078408-79078427	Msa0046740:five_prime_UTR	45.0%
	TTGCAAAATAGTCCTGCGGT+AGG	+	chr1_1:79076409-79076428	None:intergenic	45.0%
	GAAAAATAACACGGGGGAGT+GGG	-	chr1_1:79076468-79076487	Msa0046740:three_prime_UTR	45.0%
	ATTGCAGGTTCGATCAACGT+TGG	-	chr1_1:79076761-79076780	Msa0046740:exon	45.0%
	ACAACTTGATGTGTGGAGCA+AGG	-	chr1_1:79076994-79077013	Msa0046740:intron	45.0%
	CAACTTGATGTGTGGAGCAA+GGG	-	chr1_1:79076995-79077014	Msa0046740:intron	45.0%
	AGGTCAATTTGGACCGAACT+GGG	+	chr1_1:79077133-79077152	None:intergenic	45.0%
	TAGGTCAATTTGGACCGAAC+TGG	+	chr1_1:79077134-79077153	None:intergenic	45.0%
	GGTCCAAATTGACCTAGTCT+GGG	-	chr1_1:79077138-79077157	Msa0046740:intron	45.0%
	GTCCAAATTGACCTAGTCTG+GGG	-	chr1_1:79077139-79077158	Msa0046740:intron	45.0%
	TCCAAATTGACCTAGTCTGG+GGG	-	chr1_1:79077140-79077159	Msa0046740:intron	45.0%
!	CTCATCATATAGTGGAACGG+AGG	+	chr1_1:79077176-79077195	None:intergenic	45.0%
	GGATTTGGGTAGAATTAGGC+GGG	+	chr1_1:79077236-79077255	None:intergenic	45.0%
	GGGATTTGGGTAGAATTAGG+CGG	+	chr1_1:79077237-79077256	None:intergenic	45.0%
	GCTGGGATTTGGGTAGAATT+AGG	+	chr1_1:79077240-79077259	None:intergenic	45.0%
	GGATTGAGTCTCTTGGTTAC+GGG	+	chr1_1:79077268-79077287	None:intergenic	45.0%
	CTCCCAAAGACAGCCAAAAT+CGG	-	chr1_1:79077570-79077589	Msa0046740:intron	45.0%
	TCCCAAAGACAGCCAAAATC+GGG	-	chr1_1:79077571-79077590	Msa0046740:intron	45.0%
!!	GCTATGCTATTTCCTCAGCT+TGG	-	chr1_1:79077847-79077866	Msa0046740:intron	45.0%
	CGAGAAGGCCCATAAAAATG+AGG	+	chr1_1:79077916-79077935	None:intergenic	45.0%
	AGAGGGATAAAGCTTCGAGA+AGG	+	chr1_1:79077931-79077950	None:intergenic	45.0%
	TATCCCTCTCTCTCTAGATG+TGG	-	chr1_1:79077942-79077961	Msa0046740:intron	45.0%
	TGACCACATCTAGAGAGAGA+GGG	+	chr1_1:79077948-79077967	None:intergenic	45.0%
!!	AAGAAGAGTACCTGGGTACT+GGG	-	chr1_1:79078408-79078427	Msa0046740:five_prime_UTR	45.0%
	GAAAATGACTGACCTACCGC+AGG	-	chr1_1:79076394-79076413	Msa0046740:three_prime_UTR	50.0%
	GGAAAAATAACACGGGGGAG+TGG	-	chr1_1:79076467-79076486	Msa0046740:three_prime_UTR	50.0%
	AATCAGCACGGCGAAGGAAT+GGG	-	chr1_1:79076530-79076549	Msa0046740:three_prime_UTR	50.0%
	AGAAATGGGTCCACTTTCGG+TGG	-	chr1_1:79076564-79076583	Msa0046740:three_prime_UTR	50.0%
	GTCAAGTTCACCACCGAAAG+TGG	+	chr1_1:79076577-79076596	None:intergenic	50.0%
	CGGTCCAAATTGACCTAGTC+TGG	-	chr1_1:79077137-79077156	Msa0046740:intron	50.0%
	TCCCCCAGACTAGGTCAATT+TGG	+	chr1_1:79077144-79077163	None:intergenic	50.0%
	AGTCTCTTGGTTACGGGAAG+AGG	+	chr1_1:79077262-79077281	None:intergenic	50.0%
	GATAGAGGGGGCTGAAACAA+GGG	+	chr1_1:79077390-79077409	None:intergenic	50.0%
	AGATAGAGGGGGCTGAAACA+AGG	+	chr1_1:79077391-79077410	None:intergenic	50.0%
!	GGGCCCCGATTTTTACCATT+CGG	-	chr1_1:79077521-79077540	Msa0046740:intron	50.0%
!	GGCCCCGATTTTTACCATTC+GGG	-	chr1_1:79077522-79077541	Msa0046740:intron	50.0%
	CGCCCGAATGGTAAAAATCG+GGG	+	chr1_1:79077527-79077546	None:intergenic	50.0%
	GCGCCCGAATGGTAAAAATC+GGG	+	chr1_1:79077528-79077547	None:intergenic	50.0%
	GGCGCCCGAATGGTAAAAAT+CGG	+	chr1_1:79077529-79077548	None:intergenic	50.0%
!	CTTTGGGAGCAGTTTGGTAC+TGG	+	chr1_1:79077559-79077578	None:intergenic	50.0%
!!!	GCCCGATTTTGGCTGTCTTT+GGG	+	chr1_1:79077575-79077594	None:intergenic	50.0%
!	TACAAATCGGGGCCCGATTT+TGG	+	chr1_1:79077586-79077605	None:intergenic	50.0%
	CTATTTCCTCAGCTTGGCGA+TGG	-	chr1_1:79077853-79077872	Msa0046740:intron	50.0%
	GTGACCACATCTAGAGAGAG+AGG	+	chr1_1:79077949-79077968	None:intergenic	50.0%
!!	ACAGGGTGAAGAAGAGTACC+TGG	-	chr1_1:79078400-79078419	Msa0046740:five_prime_UTR	50.0%
!!	CAGGGTGAAGAAGAGTACCT+GGG	-	chr1_1:79078401-79078420	Msa0046740:five_prime_UTR	50.0%
!!	GAAGAAGAGTACCTGGGTAC+TGG	-	chr1_1:79078407-79078426	Msa0046740:five_prime_UTR	50.0%
	GAAAATGACTGACCTACCGC+AGG	-	chr1_1:79076394-79076413	Msa0046740:three_prime_UTR	50.0%
	GGAAAAATAACACGGGGGAG+TGG	-	chr1_1:79076467-79076486	Msa0046740:three_prime_UTR	50.0%
	AATCAGCACGGCGAAGGAAT+GGG	-	chr1_1:79076530-79076549	Msa0046740:three_prime_UTR	50.0%
	AGAAATGGGTCCACTTTCGG+TGG	-	chr1_1:79076564-79076583	Msa0046740:three_prime_UTR	50.0%
	GTCAAGTTCACCACCGAAAG+TGG	+	chr1_1:79076577-79076596	None:intergenic	50.0%
	CGGTCCAAATTGACCTAGTC+TGG	-	chr1_1:79077137-79077156	Msa0046740:intron	50.0%
	TCCCCCAGACTAGGTCAATT+TGG	+	chr1_1:79077144-79077163	None:intergenic	50.0%
	AGTCTCTTGGTTACGGGAAG+AGG	+	chr1_1:79077262-79077281	None:intergenic	50.0%
	GATAGAGGGGGCTGAAACAA+GGG	+	chr1_1:79077390-79077409	None:intergenic	50.0%
	AGATAGAGGGGGCTGAAACA+AGG	+	chr1_1:79077391-79077410	None:intergenic	50.0%
!	GGGCCCCGATTTTTACCATT+CGG	-	chr1_1:79077521-79077540	Msa0046740:intron	50.0%
!	GGCCCCGATTTTTACCATTC+GGG	-	chr1_1:79077522-79077541	Msa0046740:intron	50.0%
	CGCCCGAATGGTAAAAATCG+GGG	+	chr1_1:79077527-79077546	None:intergenic	50.0%
	GCGCCCGAATGGTAAAAATC+GGG	+	chr1_1:79077528-79077547	None:intergenic	50.0%
	GGCGCCCGAATGGTAAAAAT+CGG	+	chr1_1:79077529-79077548	None:intergenic	50.0%
!	CTTTGGGAGCAGTTTGGTAC+TGG	+	chr1_1:79077559-79077578	None:intergenic	50.0%
!!!	GCCCGATTTTGGCTGTCTTT+GGG	+	chr1_1:79077575-79077594	None:intergenic	50.0%
!	TACAAATCGGGGCCCGATTT+TGG	+	chr1_1:79077586-79077605	None:intergenic	50.0%
	CTATTTCCTCAGCTTGGCGA+TGG	-	chr1_1:79077853-79077872	Msa0046740:intron	50.0%
	GTGACCACATCTAGAGAGAG+AGG	+	chr1_1:79077949-79077968	None:intergenic	50.0%
!!	ACAGGGTGAAGAAGAGTACC+TGG	-	chr1_1:79078400-79078419	Msa0046740:five_prime_UTR	50.0%
!!	CAGGGTGAAGAAGAGTACCT+GGG	-	chr1_1:79078401-79078420	Msa0046740:five_prime_UTR	50.0%
!!	GAAGAAGAGTACCTGGGTAC+TGG	-	chr1_1:79078407-79078426	Msa0046740:five_prime_UTR	50.0%
	GTACAGAATCAGCACGGCGA+AGG	-	chr1_1:79076524-79076543	Msa0046740:three_prime_UTR	55.0%
	GAATCAGCACGGCGAAGGAA+TGG	-	chr1_1:79076529-79076548	Msa0046740:three_prime_UTR	55.0%
	ACGGGAAGAGGCTGGGATTT+GGG	+	chr1_1:79077250-79077269	None:intergenic	55.0%
	TACGGGAAGAGGCTGGGATT+TGG	+	chr1_1:79077251-79077270	None:intergenic	55.0%
	CTTGGTTACGGGAAGAGGCT+GGG	+	chr1_1:79077257-79077276	None:intergenic	55.0%
	TCTTGGTTACGGGAAGAGGC+TGG	+	chr1_1:79077258-79077277	None:intergenic	55.0%
	TGGAAAAATCGGCGCCCGAA+TGG	+	chr1_1:79077539-79077558	None:intergenic	55.0%
!	GGCTGTCTTTGGGAGCAGTT+TGG	+	chr1_1:79077565-79077584	None:intergenic	55.0%
!!!	GGCCCGATTTTGGCTGTCTT+TGG	+	chr1_1:79077576-79077595	None:intergenic	55.0%
	TCCTCAGCTTGGCGATGGTT+TGG	-	chr1_1:79077858-79077877	Msa0046740:intron	55.0%
	ACCAAACCATCGCCAAGCTG+AGG	+	chr1_1:79077862-79077881	None:intergenic	55.0%
	GTACAGAATCAGCACGGCGA+AGG	-	chr1_1:79076524-79076543	Msa0046740:three_prime_UTR	55.0%
	GAATCAGCACGGCGAAGGAA+TGG	-	chr1_1:79076529-79076548	Msa0046740:three_prime_UTR	55.0%
	ACGGGAAGAGGCTGGGATTT+GGG	+	chr1_1:79077250-79077269	None:intergenic	55.0%
	TACGGGAAGAGGCTGGGATT+TGG	+	chr1_1:79077251-79077270	None:intergenic	55.0%
	CTTGGTTACGGGAAGAGGCT+GGG	+	chr1_1:79077257-79077276	None:intergenic	55.0%
	TCTTGGTTACGGGAAGAGGC+TGG	+	chr1_1:79077258-79077277	None:intergenic	55.0%
	TGGAAAAATCGGCGCCCGAA+TGG	+	chr1_1:79077539-79077558	None:intergenic	55.0%
!	GGCTGTCTTTGGGAGCAGTT+TGG	+	chr1_1:79077565-79077584	None:intergenic	55.0%
!!!	GGCCCGATTTTGGCTGTCTT+TGG	+	chr1_1:79077576-79077595	None:intergenic	55.0%
	TCCTCAGCTTGGCGATGGTT+TGG	-	chr1_1:79077858-79077877	Msa0046740:intron	55.0%
	ACCAAACCATCGCCAAGCTG+AGG	+	chr1_1:79077862-79077881	None:intergenic	55.0%
	GCTGCTCTCTCCCCCAGACT+AGG	+	chr1_1:79077153-79077172	None:intergenic	65.0%
	GCTGCTCTCTCCCCCAGACT+AGG	+	chr1_1:79077153-79077172	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	79076367	79078436	79076367	ID=Msa0046740;Name=Msa0046740
chr1_1	mRNA	79076367	79078436	79076367	ID=Msa0046740-mRNA-1;Parent=Msa0046740;Name=Msa0046740-mRNA-1;_AED=0.07;_eAED=0.07;_QI=143\|1\|1\|1\|1\|1\|3\|410\|120
chr1_1	exon	79076367	79076938	79076367	ID=Msa0046740-mRNA-1:exon:27233;Parent=Msa0046740-mRNA-1
chr1_1	exon	79077961	79078035	79077961	ID=Msa0046740-mRNA-1:exon:27232;Parent=Msa0046740-mRNA-1
chr1_1	exon	79078168	79078436	79078168	ID=Msa0046740-mRNA-1:exon:27231;Parent=Msa0046740-mRNA-1
chr1_1	five_prime_UTR	79078294	79078436	79078294	ID=Msa0046740-mRNA-1:five_prime_utr;Parent=Msa0046740-mRNA-1
chr1_1	CDS	79078168	79078293	79078168	ID=Msa0046740-mRNA-1:cds;Parent=Msa0046740-mRNA-1
chr1_1	CDS	79077961	79078035	79077961	ID=Msa0046740-mRNA-1:cds;Parent=Msa0046740-mRNA-1
chr1_1	CDS	79076777	79076938	79076777	ID=Msa0046740-mRNA-1:cds;Parent=Msa0046740-mRNA-1
chr1_1	three_prime_UTR	79076367	79076776	79076367	ID=Msa0046740-mRNA-1:three_prime_utr;Parent=Msa0046740-mRNA-1

Gene Sequence	>Msa0046740 ATGAGTGATTTTGTGTACAGAATCAGCACGGCGAAGGAATGGGAAGAATTGCAAAGAAATGGGTCCACTTTCGGTGGTGAACTTGACAAGTCTTCTTCTTTCATCCATCTTAGCAAACTAGATCAGGTTCGATCAACGTTGGATAATTTTTTCTTGAATTCTAAAGATGAACTCTACCTTCTTCAGATTGATGCTAAGAAGCTTGGCGATGGTTTGGTGTATGAAATTGTGGACGGTTCAAATAGCTTCCCTCATTTTTATGGGCCTTCTCGAAGCTTTATCCCTCTCTCTCTAGATGTGGTCACAAAAGCGGAGAAGCTGTCTCTTTCAAATGGTCGGTTCAGTAGTAGTTTGCTTGATTAA
Protein sequence	>Msa0046740 MSDFVYRISTAKEWEELQRNGSTFGGELDKSSSFIHLSKLDQVRSTLDNFFLNSKDELYLLQIDAKKLGDGLVYEIVDGSNSFPHFYGPSRSFIPLSLDVVTKAEKLSLSNGRFSSSLLD*