AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0302160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0302160 MtrunA17_Chr2g0327931 98.039 153 3 0 1 153 1 153 1.24e-103 293
Msa0302160 MtrunA17_Chr4g0031041 94.074 135 5 2 19 153 14 145 1.18e-83 242
Msa0302160 MtrunA17_Chr4g0035621 92.208 154 9 2 1 153 1 152 1.09e-81 237
Msa0302160 MtrunA17_Chr2g0327951 88.889 153 12 2 1 153 38 185 7.25e-81 236
Msa0302160 MtrunA17_Chr4g0031651 91.558 154 6 3 1 153 1 148 6.80e-79 230
Msa0302160 MtrunA17_Chr4g0031001 91.558 154 6 3 1 153 1 148 2.56e-78 229
Msa0302160 MtrunA17_Chr4g0032301 90.260 154 8 3 1 153 1 148 7.92e-77 225
Msa0302160 MtrunA17_Chr8g0379311 97.727 132 2 1 1 131 1 132 3.96e-74 218
Msa0302160 MtrunA17_Chr7g0272611 81.203 133 21 2 9 138 13 144 2.81e-71 211
Msa0302160 MtrunA17_Chr7g0268831 75.000 128 26 3 3 129 6 128 4.94e-60 182
Msa0302160 MtrunA17_Chr7g0259151 71.875 128 33 1 2 129 4 128 1.32e-59 181
Msa0302160 MtrunA17_Chr7g0273351 73.438 128 29 2 3 129 2 125 2.27e-59 180
Msa0302160 MtrunA17_Chr2g0319191 74.790 119 30 0 10 128 3 121 1.27e-58 178
Msa0302160 MtrunA17_Chr7g0273331 73.228 127 31 1 3 129 58 181 1.33e-58 180
Msa0302160 MtrunA17_Chr2g0319181 73.950 119 31 0 10 128 3 121 1.45e-57 176
Msa0302160 MtrunA17_Chr6g0449661 64.754 122 29 3 23 138 85 198 3.59e-46 149
Msa0302160 MtrunA17_Chr4g0031031 76.147 109 17 2 44 152 10 109 8.13e-46 145
Msa0302160 MtrunA17_Chr3g0119971 64.463 121 29 3 24 138 81 193 1.04e-45 147
Msa0302160 MtrunA17_Chr7g0273341 71.296 108 20 2 22 129 57 153 2.51e-45 145
Msa0302160 MtrunA17_Chr1g0148961 59.821 112 43 2 20 130 23 133 7.11e-36 120
Msa0302160 MtrunA17_Chr1g0148951 59.821 112 43 2 20 130 23 133 7.11e-36 120
Msa0302160 MtrunA17_Chr1g0211651 59.633 109 42 2 20 127 20 127 6.27e-35 118
Msa0302160 MtrunA17_Chr1g0184901 61.538 104 38 2 25 127 28 130 2.94e-34 116
Msa0302160 MtrunA17_Chr1g0183701 61.644 73 28 0 66 138 30 102 9.55e-27 96.7
Msa0302160 MtrunA17_Chr4g0024701 49.524 105 33 2 23 127 26 110 5.06e-22 85.1
Msa0302160 MtrunA17_Chr4g0000531 60.000 55 22 0 84 138 5 59 8.33e-16 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0302160 AT5G02560.1 80.519 154 28 2 1 153 1 153 3.36e-78 229
Msa0302160 AT5G02560.2 69.663 178 28 3 1 153 1 177 2.38e-73 218
Msa0302160 AT5G27670.1 75.000 152 32 2 2 153 5 150 3.60e-73 216
Msa0302160 AT5G59870.1 73.377 154 36 2 1 153 1 150 1.42e-72 214
Msa0302160 AT1G51060.1 76.667 120 28 0 10 129 3 122 7.36e-61 184
Msa0302160 AT4G27230.2 73.984 123 32 0 10 132 3 125 1.39e-59 181
Msa0302160 AT4G27230.1 73.984 123 32 0 10 132 3 125 1.39e-59 181
Msa0302160 AT3G20670.1 71.318 129 37 0 10 138 3 131 3.01e-59 180
Msa0302160 AT5G54640.1 74.790 119 30 0 10 128 3 121 3.25e-58 177
Msa0302160 AT1G08880.1 72.222 126 32 1 7 129 3 128 3.71e-58 178
Msa0302160 AT1G54690.1 73.171 123 30 1 10 129 6 128 9.00e-58 177
Msa0302160 AT2G38810.1 59.821 112 43 2 20 130 25 135 2.08e-36 122
Msa0302160 AT2G38810.4 59.821 112 43 2 20 130 25 135 2.08e-36 122
Msa0302160 AT2G38810.3 59.821 112 43 2 20 130 25 135 2.08e-36 122
Msa0302160 AT2G38810.2 59.821 112 43 2 20 130 25 135 2.08e-36 122
Msa0302160 AT1G52740.1 61.905 105 38 2 24 127 27 130 1.35e-34 118
Msa0302160 AT3G54560.1 59.259 108 42 2 24 130 29 135 2.47e-34 117
Msa0302160 AT3G54560.2 59.259 108 42 2 24 130 29 135 2.47e-34 117
Msa0302160 AT4G13570.1 47.826 92 46 2 31 121 28 118 7.97e-20 79.7
Msa0302160 AT4G13570.2 47.253 91 46 2 32 121 35 124 1.74e-19 79.0

Find 61 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACTCCATAGACAATTTA+AGG 0.186735 2_3:+58889665 None:intergenic
CCATTTCCGAGATTGGAATT+TGG 0.219353 2_3:+58890397 None:intergenic
AACCTAATCTAAGCCTTCTT+TGG 0.260442 2_3:+58889838 None:intergenic
GCGTTTGAAATGATGTAATT+TGG 0.268471 2_3:-58889743 Msa0302160:three_prime_UTR
GTAGACCTTTCAGTCTTCTT+AGG 0.271890 2_3:+58889910 None:intergenic
TATTTGCCTTAAATTGTCTA+TGG 0.279063 2_3:-58889671 Msa0302160:three_prime_UTR
CTTGCGTCCATTTCCGAGAT+TGG 0.309548 2_3:+58890390 None:intergenic
GGCTTAGATTAGGTTTCTTA+TGG 0.319196 2_3:-58889830 Msa0302160:exon
GTCTTCTTAGGCAAAAGAAC+AGG 0.334824 2_3:+58889922 None:intergenic
ACCAGCTCCTTTCTTCGTCT+TGG 0.348361 2_3:+58890365 None:intergenic
TTATGTTTAGGTTCTTGAAT+TGG 0.357612 2_3:-58890085 Msa0302160:intron
AGAACAGCGGCGAGGTAAAC+AGG 0.381456 2_3:+58890210 None:intergenic
AAAAGAACAGGGTTAATGTT+TGG 0.382061 2_3:+58889934 None:intergenic
CAATTTCCAGTTGGAAGAAT+CGG 0.382886 2_3:-58890282 Msa0302160:CDS
TGTGTGTATAATTGCGCTTT+AGG 0.395647 2_3:-58889794 Msa0302160:three_prime_UTR
GCCTTAGGCTTAGGAGACTT+TGG 0.397268 2_3:+58889871 None:intergenic
CTCCAAAGAAGGCTTAGATT+AGG 0.399064 2_3:-58889840 Msa0302160:exon
GACTTTCCAGCCTTAGGCTT+AGG 0.400283 2_3:+58889862 None:intergenic
CTGGTCACAGACTTCTTCCT+TGG 0.400754 2_3:+58890324 None:intergenic
TTTGGAGACTTTCCAGCCTT+AGG 0.406671 2_3:+58889856 None:intergenic
CCAAATTCCAATCTCGGAAA+TGG 0.413559 2_3:-58890397 Msa0302160:exon
GAATTCGGTGTGAAATGAAA+TGG 0.427452 2_3:+58890440 None:intergenic
TGATGTAATTTGGAAGTCTC+TGG 0.433364 2_3:-58889733 Msa0302160:three_prime_UTR
GTTTAGGTTCTTGAATTGGC+TGG 0.434556 2_3:-58890081 Msa0302160:intron
TAACGGCCGATTCTTCCAAC+TGG 0.469071 2_3:+58890276 None:intergenic
AGGGTTCCAAATTCCAATCT+CGG 0.476240 2_3:-58890403 Msa0302160:five_prime_UTR
AAAGGAGCTGGTGGAAGGAA+AGG 0.477487 2_3:-58890354 Msa0302160:CDS
AATTCCAAGGCACGTGTTGT+TGG 0.477559 2_3:-58890025 Msa0302160:CDS
GGAGCTGGTGGAAGGAAAGG+TGG 0.481033 2_3:-58890351 Msa0302160:CDS
GCAAGCACCAAGACGAAGAA+AGG 0.482883 2_3:-58890372 Msa0302160:CDS
ACAGCCAACAACACGTGCCT+TGG 0.485674 2_3:+58890021 None:intergenic
TTGTAACATCTAATCGTGTA+AGG 0.486152 2_3:+58889551 None:intergenic
AAGACCAGCTCTGATGGATC+TGG 0.491289 2_3:+58890305 None:intergenic
ATCTTCCTTTCTTCAAGTAA+CGG 0.498085 2_3:+58890259 None:intergenic
AAATTGAAGACCAGCTCTGA+TGG 0.498711 2_3:+58890299 None:intergenic
TACGCTCAACGTGTTGGTAC+TGG 0.502701 2_3:-58890237 Msa0302160:CDS
TGTATAATTGCGCTTTAGGT+TGG 0.511963 2_3:-58889790 Msa0302160:three_prime_UTR
TGTGAGAAATGATGAAGAGC+TGG 0.520971 2_3:-58890001 Msa0302160:CDS
CACGTGATAACAAGAAGAAT+AGG 0.529318 2_3:-58890050 Msa0302160:CDS
GGCTGGAAAGTCTCCAAAGA+AGG 0.542007 2_3:-58889851 Msa0302160:CDS
AAGTCTCCTAAGCCTAAGGC+TGG 0.542736 2_3:-58889868 Msa0302160:CDS
ATCGGCCGTTACTTGAAGAA+AGG 0.544708 2_3:-58890264 Msa0302160:CDS
ACCAAAGTCTCCTAAGCCTA+AGG 0.550123 2_3:-58889872 Msa0302160:CDS
GTGACCAGATCCATCAGAGC+TGG 0.553138 2_3:-58890309 Msa0302160:CDS
CGAAGAAAGGAGCTGGTGGA+AGG 0.557443 2_3:-58890359 Msa0302160:CDS
AAGGTCTACTAATGCTAGCA+AGG 0.572544 2_3:-58889896 Msa0302160:CDS
ACCAAGACGAAGAAAGGAGC+TGG 0.579581 2_3:-58890366 Msa0302160:CDS
GAGCTGGGAAAATTGTTAGC+TGG 0.589509 2_3:-58889985 Msa0302160:CDS
GGAAGATACGCTCAACGTGT+TGG 0.597552 2_3:-58890243 Msa0302160:CDS
GCTGGTCTTCAATTTCCAGT+TGG 0.598252 2_3:-58890291 Msa0302160:CDS
GAAGGAAAGGTGGAGGACCA+AGG 0.610388 2_3:-58890341 Msa0302160:CDS
TCTTCTTAGGCAAAAGAACA+GGG 0.618533 2_3:+58889923 None:intergenic
GCTGGTGGAAGGAAAGGTGG+AGG 0.624747 2_3:-58890348 Msa0302160:CDS
AGAAGAATAGGATAATTCCA+AGG 0.643694 2_3:-58890038 Msa0302160:CDS
GTGAGAAATGATGAAGAGCT+GGG 0.654622 2_3:-58890000 Msa0302160:CDS
AAGACGAAGAAAGGAGCTGG+TGG 0.662071 2_3:-58890363 Msa0302160:CDS
TCTTGAATATCTCGCTGCTG+AGG 0.665898 2_3:-58890190 Msa0302160:intron
AGCGAGATATTCAAGAACAG+CGG 0.706002 2_3:+58890197 None:intergenic
GATATTCAAGAACAGCGGCG+AGG 0.723455 2_3:+58890202 None:intergenic
GCTGGTGTAACAATTGCACA+TGG 0.750058 2_3:-58889967 Msa0302160:CDS
GGTGTAACAATTGCACATGG+TGG 0.783361 2_3:-58889964 Msa0302160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAAACATAAAAATAAAATT+AGG + chr2_3:58889859-58889878 None:intergenic 10.0%
!!! CTAATTTTATTTTTATGTTT+AGG - chr2_3:58889857-58889876 Msa0302160:CDS 10.0%
!! CTAAACATAAAAATAAAATT+AGG + chr2_3:58889859-58889878 None:intergenic 10.0%
!!! CTAATTTTATTTTTATGTTT+AGG - chr2_3:58889857-58889876 Msa0302160:CDS 10.0%
!!! TAACTTTTTTGCTACGAATT+CGG + chr2_3:58889532-58889551 None:intergenic 25.0%
! AATTCGTAGCAAAAAAGTTA+GGG - chr2_3:58889532-58889551 Msa0302160:three_prime_UTR 25.0%
! AATCAAAGATCATAAGAAAG+AGG + chr2_3:58889802-58889821 None:intergenic 25.0%
! CAAAATTAGGGTTACAAAAT+TGG + chr2_3:58889826-58889845 None:intergenic 25.0%
! GGGTTACAAATTCAAAATTA+GGG + chr2_3:58889838-58889857 None:intergenic 25.0%
! AGGGTTACAAATTCAAAATT+AGG + chr2_3:58889839-58889858 None:intergenic 25.0%
!! TTATGTTTAGGTTCTTGAAT+TGG - chr2_3:58889869-58889888 Msa0302160:CDS 25.0%
! TATTTGCCTTAAATTGTCTA+TGG - chr2_3:58890283-58890302 Msa0302160:CDS 25.0%
!!! TAACTTTTTTGCTACGAATT+CGG + chr2_3:58889532-58889551 None:intergenic 25.0%
! AATTCGTAGCAAAAAAGTTA+GGG - chr2_3:58889532-58889551 Msa0302160:three_prime_UTR 25.0%
! AATCAAAGATCATAAGAAAG+AGG + chr2_3:58889802-58889821 None:intergenic 25.0%
! CAAAATTAGGGTTACAAAAT+TGG + chr2_3:58889826-58889845 None:intergenic 25.0%
! GGGTTACAAATTCAAAATTA+GGG + chr2_3:58889838-58889857 None:intergenic 25.0%
! AGGGTTACAAATTCAAAATT+AGG + chr2_3:58889839-58889858 None:intergenic 25.0%
!! TTATGTTTAGGTTCTTGAAT+TGG - chr2_3:58889869-58889888 Msa0302160:CDS 25.0%
! TATTTGCCTTAAATTGTCTA+TGG - chr2_3:58890283-58890302 Msa0302160:CDS 25.0%
! ATGAAATGGAAGATTTTGAG+TGG + chr2_3:58889503-58889522 None:intergenic 30.0%
GAATTCGTAGCAAAAAAGTT+AGG - chr2_3:58889531-58889550 Msa0302160:three_prime_UTR 30.0%
ATCTTCCTTTCTTCAAGTAA+CGG + chr2_3:58889698-58889717 None:intergenic 30.0%
AGAAGAATAGGATAATTCCA+AGG - chr2_3:58889916-58889935 Msa0302160:CDS 30.0%
AAAAGAACAGGGTTAATGTT+TGG + chr2_3:58890023-58890042 None:intergenic 30.0%
! GCGTTTGAAATGATGTAATT+TGG - chr2_3:58890211-58890230 Msa0302160:CDS 30.0%
CAAACTCCATAGACAATTTA+AGG + chr2_3:58890292-58890311 None:intergenic 30.0%
TTGTAACATCTAATCGTGTA+AGG + chr2_3:58890406-58890425 None:intergenic 30.0%
! ATGAAATGGAAGATTTTGAG+TGG + chr2_3:58889503-58889522 None:intergenic 30.0%
GAATTCGTAGCAAAAAAGTT+AGG - chr2_3:58889531-58889550 Msa0302160:three_prime_UTR 30.0%
ATCTTCCTTTCTTCAAGTAA+CGG + chr2_3:58889698-58889717 None:intergenic 30.0%
AGAAGAATAGGATAATTCCA+AGG - chr2_3:58889916-58889935 Msa0302160:CDS 30.0%
AAAAGAACAGGGTTAATGTT+TGG + chr2_3:58890023-58890042 None:intergenic 30.0%
! GCGTTTGAAATGATGTAATT+TGG - chr2_3:58890211-58890230 Msa0302160:CDS 30.0%
CAAACTCCATAGACAATTTA+AGG + chr2_3:58890292-58890311 None:intergenic 30.0%
TTGTAACATCTAATCGTGTA+AGG + chr2_3:58890406-58890425 None:intergenic 30.0%
!! GAATTCGGTGTGAAATGAAA+TGG + chr2_3:58889517-58889536 None:intergenic 35.0%
CAATTTCCAGTTGGAAGAAT+CGG - chr2_3:58889672-58889691 Msa0302160:three_prime_UTR 35.0%
CACGTGATAACAAGAAGAAT+AGG - chr2_3:58889904-58889923 Msa0302160:CDS 35.0%
TCTTCTTAGGCAAAAGAACA+GGG + chr2_3:58890034-58890053 None:intergenic 35.0%
! TTTTGCCTAAGAAGACTGAA+AGG - chr2_3:58890039-58890058 Msa0302160:CDS 35.0%
AACCTAATCTAAGCCTTCTT+TGG + chr2_3:58890119-58890138 None:intergenic 35.0%
GGCTTAGATTAGGTTTCTTA+TGG - chr2_3:58890124-58890143 Msa0302160:intron 35.0%
TGTGTGTATAATTGCGCTTT+AGG - chr2_3:58890160-58890179 Msa0302160:intron 35.0%
! TGTATAATTGCGCTTTAGGT+TGG - chr2_3:58890164-58890183 Msa0302160:intron 35.0%
!!! TTAGGTTGGTGTTTTGTAAC+TGG - chr2_3:58890178-58890197 Msa0302160:intron 35.0%
TGATGTAATTTGGAAGTCTC+TGG - chr2_3:58890221-58890240 Msa0302160:CDS 35.0%
!! GAATTCGGTGTGAAATGAAA+TGG + chr2_3:58889517-58889536 None:intergenic 35.0%
CAATTTCCAGTTGGAAGAAT+CGG - chr2_3:58889672-58889691 Msa0302160:three_prime_UTR 35.0%
CACGTGATAACAAGAAGAAT+AGG - chr2_3:58889904-58889923 Msa0302160:CDS 35.0%
TCTTCTTAGGCAAAAGAACA+GGG + chr2_3:58890034-58890053 None:intergenic 35.0%
! TTTTGCCTAAGAAGACTGAA+AGG - chr2_3:58890039-58890058 Msa0302160:CDS 35.0%
AACCTAATCTAAGCCTTCTT+TGG + chr2_3:58890119-58890138 None:intergenic 35.0%
GGCTTAGATTAGGTTTCTTA+TGG - chr2_3:58890124-58890143 Msa0302160:intron 35.0%
TGTGTGTATAATTGCGCTTT+AGG - chr2_3:58890160-58890179 Msa0302160:intron 35.0%
! TGTATAATTGCGCTTTAGGT+TGG - chr2_3:58890164-58890183 Msa0302160:intron 35.0%
!!! TTAGGTTGGTGTTTTGTAAC+TGG - chr2_3:58890178-58890197 Msa0302160:intron 35.0%
TGATGTAATTTGGAAGTCTC+TGG - chr2_3:58890221-58890240 Msa0302160:CDS 35.0%
AGGGTTCCAAATTCCAATCT+CGG - chr2_3:58889551-58889570 Msa0302160:three_prime_UTR 40.0%
CCATTTCCGAGATTGGAATT+TGG + chr2_3:58889560-58889579 None:intergenic 40.0%
CCAAATTCCAATCTCGGAAA+TGG - chr2_3:58889557-58889576 Msa0302160:three_prime_UTR 40.0%
! AAATTGAAGACCAGCTCTGA+TGG + chr2_3:58889658-58889677 None:intergenic 40.0%
AGCGAGATATTCAAGAACAG+CGG + chr2_3:58889760-58889779 None:intergenic 40.0%
! GTTTAGGTTCTTGAATTGGC+TGG - chr2_3:58889873-58889892 Msa0302160:CDS 40.0%
TGTGAGAAATGATGAAGAGC+TGG - chr2_3:58889953-58889972 Msa0302160:CDS 40.0%
GTGAGAAATGATGAAGAGCT+GGG - chr2_3:58889954-58889973 Msa0302160:CDS 40.0%
GTCTTCTTAGGCAAAAGAAC+AGG + chr2_3:58890035-58890054 None:intergenic 40.0%
GTAGACCTTTCAGTCTTCTT+AGG + chr2_3:58890047-58890066 None:intergenic 40.0%
AAGGTCTACTAATGCTAGCA+AGG - chr2_3:58890058-58890077 Msa0302160:CDS 40.0%
CTCCAAAGAAGGCTTAGATT+AGG - chr2_3:58890114-58890133 Msa0302160:intron 40.0%
!! GTTGGTGTTTTGTAACTGGA+AGG - chr2_3:58890182-58890201 Msa0302160:intron 40.0%
AGGGTTCCAAATTCCAATCT+CGG - chr2_3:58889551-58889570 Msa0302160:three_prime_UTR 40.0%
CCATTTCCGAGATTGGAATT+TGG + chr2_3:58889560-58889579 None:intergenic 40.0%
CCAAATTCCAATCTCGGAAA+TGG - chr2_3:58889557-58889576 Msa0302160:three_prime_UTR 40.0%
! AAATTGAAGACCAGCTCTGA+TGG + chr2_3:58889658-58889677 None:intergenic 40.0%
AGCGAGATATTCAAGAACAG+CGG + chr2_3:58889760-58889779 None:intergenic 40.0%
! GTTTAGGTTCTTGAATTGGC+TGG - chr2_3:58889873-58889892 Msa0302160:CDS 40.0%
TGTGAGAAATGATGAAGAGC+TGG - chr2_3:58889953-58889972 Msa0302160:CDS 40.0%
GTGAGAAATGATGAAGAGCT+GGG - chr2_3:58889954-58889973 Msa0302160:CDS 40.0%
GTCTTCTTAGGCAAAAGAAC+AGG + chr2_3:58890035-58890054 None:intergenic 40.0%
GTAGACCTTTCAGTCTTCTT+AGG + chr2_3:58890047-58890066 None:intergenic 40.0%
AAGGTCTACTAATGCTAGCA+AGG - chr2_3:58890058-58890077 Msa0302160:CDS 40.0%
CTCCAAAGAAGGCTTAGATT+AGG - chr2_3:58890114-58890133 Msa0302160:intron 40.0%
!! GTTGGTGTTTTGTAACTGGA+AGG - chr2_3:58890182-58890201 Msa0302160:intron 40.0%
!! GCTGGTCTTCAATTTCCAGT+TGG - chr2_3:58889663-58889682 Msa0302160:three_prime_UTR 45.0%
ATCGGCCGTTACTTGAAGAA+AGG - chr2_3:58889690-58889709 Msa0302160:three_prime_UTR 45.0%
TCTTGAATATCTCGCTGCTG+AGG - chr2_3:58889764-58889783 Msa0302160:three_prime_UTR 45.0%
AATTCCAAGGCACGTGTTGT+TGG - chr2_3:58889929-58889948 Msa0302160:CDS 45.0%
GAGCTGGGAAAATTGTTAGC+TGG - chr2_3:58889969-58889988 Msa0302160:CDS 45.0%
GCTGGTGTAACAATTGCACA+TGG - chr2_3:58889987-58890006 Msa0302160:CDS 45.0%
GGTGTAACAATTGCACATGG+TGG - chr2_3:58889990-58890009 Msa0302160:CDS 45.0%
ACCAAAGTCTCCTAAGCCTA+AGG - chr2_3:58890082-58890101 Msa0302160:intron 45.0%
TTTGGAGACTTTCCAGCCTT+AGG + chr2_3:58890101-58890120 None:intergenic 45.0%
!! GCTGGTCTTCAATTTCCAGT+TGG - chr2_3:58889663-58889682 Msa0302160:three_prime_UTR 45.0%
ATCGGCCGTTACTTGAAGAA+AGG - chr2_3:58889690-58889709 Msa0302160:three_prime_UTR 45.0%
TCTTGAATATCTCGCTGCTG+AGG - chr2_3:58889764-58889783 Msa0302160:three_prime_UTR 45.0%
AATTCCAAGGCACGTGTTGT+TGG - chr2_3:58889929-58889948 Msa0302160:CDS 45.0%
GAGCTGGGAAAATTGTTAGC+TGG - chr2_3:58889969-58889988 Msa0302160:CDS 45.0%
GCTGGTGTAACAATTGCACA+TGG - chr2_3:58889987-58890006 Msa0302160:CDS 45.0%
GGTGTAACAATTGCACATGG+TGG - chr2_3:58889990-58890009 Msa0302160:CDS 45.0%
ACCAAAGTCTCCTAAGCCTA+AGG - chr2_3:58890082-58890101 Msa0302160:intron 45.0%
TTTGGAGACTTTCCAGCCTT+AGG + chr2_3:58890101-58890120 None:intergenic 45.0%
!! TAAACATAAAAATAAAATTA+GGG + chr2_3:58889858-58889877 None:intergenic 5.0%
!! TAAACATAAAAATAAAATTA+GGG + chr2_3:58889858-58889877 None:intergenic 5.0%
CTTGCGTCCATTTCCGAGAT+TGG + chr2_3:58889567-58889586 None:intergenic 50.0%
GCAAGCACCAAGACGAAGAA+AGG - chr2_3:58889582-58889601 Msa0302160:three_prime_UTR 50.0%
ACCAAGACGAAGAAAGGAGC+TGG - chr2_3:58889588-58889607 Msa0302160:three_prime_UTR 50.0%
ACCAGCTCCTTTCTTCGTCT+TGG + chr2_3:58889592-58889611 None:intergenic 50.0%
AAGACGAAGAAAGGAGCTGG+TGG - chr2_3:58889591-58889610 Msa0302160:three_prime_UTR 50.0%
AAAGGAGCTGGTGGAAGGAA+AGG - chr2_3:58889600-58889619 Msa0302160:three_prime_UTR 50.0%
CTGGTCACAGACTTCTTCCT+TGG + chr2_3:58889633-58889652 None:intergenic 50.0%
! AAGACCAGCTCTGATGGATC+TGG + chr2_3:58889652-58889671 None:intergenic 50.0%
! TAACGGCCGATTCTTCCAAC+TGG + chr2_3:58889681-58889700 None:intergenic 50.0%
GGAAGATACGCTCAACGTGT+TGG - chr2_3:58889711-58889730 Msa0302160:three_prime_UTR 50.0%
! TACGCTCAACGTGTTGGTAC+TGG - chr2_3:58889717-58889736 Msa0302160:three_prime_UTR 50.0%
GATATTCAAGAACAGCGGCG+AGG + chr2_3:58889755-58889774 None:intergenic 50.0%
GCCTTAGGCTTAGGAGACTT+TGG + chr2_3:58890086-58890105 None:intergenic 50.0%
AAGTCTCCTAAGCCTAAGGC+TGG - chr2_3:58890086-58890105 Msa0302160:intron 50.0%
GACTTTCCAGCCTTAGGCTT+AGG + chr2_3:58890095-58890114 None:intergenic 50.0%
GGCTGGAAAGTCTCCAAAGA+AGG - chr2_3:58890103-58890122 Msa0302160:intron 50.0%
CTTGCGTCCATTTCCGAGAT+TGG + chr2_3:58889567-58889586 None:intergenic 50.0%
GCAAGCACCAAGACGAAGAA+AGG - chr2_3:58889582-58889601 Msa0302160:three_prime_UTR 50.0%
ACCAAGACGAAGAAAGGAGC+TGG - chr2_3:58889588-58889607 Msa0302160:three_prime_UTR 50.0%
ACCAGCTCCTTTCTTCGTCT+TGG + chr2_3:58889592-58889611 None:intergenic 50.0%
AAGACGAAGAAAGGAGCTGG+TGG - chr2_3:58889591-58889610 Msa0302160:three_prime_UTR 50.0%
AAAGGAGCTGGTGGAAGGAA+AGG - chr2_3:58889600-58889619 Msa0302160:three_prime_UTR 50.0%
CTGGTCACAGACTTCTTCCT+TGG + chr2_3:58889633-58889652 None:intergenic 50.0%
! AAGACCAGCTCTGATGGATC+TGG + chr2_3:58889652-58889671 None:intergenic 50.0%
! TAACGGCCGATTCTTCCAAC+TGG + chr2_3:58889681-58889700 None:intergenic 50.0%
GGAAGATACGCTCAACGTGT+TGG - chr2_3:58889711-58889730 Msa0302160:three_prime_UTR 50.0%
! TACGCTCAACGTGTTGGTAC+TGG - chr2_3:58889717-58889736 Msa0302160:three_prime_UTR 50.0%
GATATTCAAGAACAGCGGCG+AGG + chr2_3:58889755-58889774 None:intergenic 50.0%
GCCTTAGGCTTAGGAGACTT+TGG + chr2_3:58890086-58890105 None:intergenic 50.0%
AAGTCTCCTAAGCCTAAGGC+TGG - chr2_3:58890086-58890105 Msa0302160:intron 50.0%
GACTTTCCAGCCTTAGGCTT+AGG + chr2_3:58890095-58890114 None:intergenic 50.0%
GGCTGGAAAGTCTCCAAAGA+AGG - chr2_3:58890103-58890122 Msa0302160:intron 50.0%
CGAAGAAAGGAGCTGGTGGA+AGG - chr2_3:58889595-58889614 Msa0302160:three_prime_UTR 55.0%
GAAGGAAAGGTGGAGGACCA+AGG - chr2_3:58889613-58889632 Msa0302160:three_prime_UTR 55.0%
GTGACCAGATCCATCAGAGC+TGG - chr2_3:58889645-58889664 Msa0302160:three_prime_UTR 55.0%
AGAACAGCGGCGAGGTAAAC+AGG + chr2_3:58889747-58889766 None:intergenic 55.0%
ACAGCCAACAACACGTGCCT+TGG + chr2_3:58889936-58889955 None:intergenic 55.0%
CGAAGAAAGGAGCTGGTGGA+AGG - chr2_3:58889595-58889614 Msa0302160:three_prime_UTR 55.0%
GAAGGAAAGGTGGAGGACCA+AGG - chr2_3:58889613-58889632 Msa0302160:three_prime_UTR 55.0%
GTGACCAGATCCATCAGAGC+TGG - chr2_3:58889645-58889664 Msa0302160:three_prime_UTR 55.0%
AGAACAGCGGCGAGGTAAAC+AGG + chr2_3:58889747-58889766 None:intergenic 55.0%
ACAGCCAACAACACGTGCCT+TGG + chr2_3:58889936-58889955 None:intergenic 55.0%
GGAGCTGGTGGAAGGAAAGG+TGG - chr2_3:58889603-58889622 Msa0302160:three_prime_UTR 60.0%
GCTGGTGGAAGGAAAGGTGG+AGG - chr2_3:58889606-58889625 Msa0302160:three_prime_UTR 60.0%
GGAGCTGGTGGAAGGAAAGG+TGG - chr2_3:58889603-58889622 Msa0302160:three_prime_UTR 60.0%
GCTGGTGGAAGGAAAGGTGG+AGG - chr2_3:58889606-58889625 Msa0302160:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 58889487 58890489 58889487 ID=Msa0302160;Name=Msa0302160
chr2_3 mRNA 58889487 58890489 58889487 ID=Msa0302160-mRNA-1;Parent=Msa0302160;Name=Msa0302160-mRNA-1;_AED=0.01;_eAED=0.01;_QI=89|1|1|1|1|1|2|359|153
chr2_3 exon 58889487 58890097 58889487 ID=Msa0302160-mRNA-1:exon:19026;Parent=Msa0302160-mRNA-1
chr2_3 exon 58890191 58890489 58890191 ID=Msa0302160-mRNA-1:exon:19025;Parent=Msa0302160-mRNA-1
chr2_3 five_prime_UTR 58890401 58890489 58890401 ID=Msa0302160-mRNA-1:five_prime_utr;Parent=Msa0302160-mRNA-1
chr2_3 CDS 58890191 58890400 58890191 ID=Msa0302160-mRNA-1:cds;Parent=Msa0302160-mRNA-1
chr2_3 CDS 58889846 58890097 58889846 ID=Msa0302160-mRNA-1:cds;Parent=Msa0302160-mRNA-1
chr2_3 three_prime_UTR 58889487 58889845 58889487 ID=Msa0302160-mRNA-1:three_prime_utr;Parent=Msa0302160-mRNA-1
Gene Sequence

>Msa0302160

ATGGACGCAAGCACCAAGACGAAGAAAGGAGCTGGTGGAAGGAAAGGTGGAGGACCAAGGAAGAAGTCTGTGACCAGATCCATCAGAGCTGGTCTTCAATTTCCAGTTGGAAGAATCGGCCGTTACTTGAAGAAAGGAAGATACGCTCAACGTGTTGGTACTGGTGCTCCTGTTTACCTCGCCGCTGTTCTTGAATATCTCGCTGCTGAGGTTCTTGAATTGGCTGGAAATGCTGCACGTGATAACAAGAAGAATAGGATAATTCCAAGGCACGTGTTGTTGGCTGTGAGAAATGATGAAGAGCTGGGAAAATTGTTAGCTGGTGTAACAATTGCACATGGTGGTGTTCTTCCAAACATTAACCCTGTTCTTTTGCCTAAGAAGACTGAAAGGTCTACTAATGCTAGCAAGGAACCAAAGTCTCCTAAGCCTAAGGCTGGAAAGTCTCCAAAGAAGGCTTAG

Protein sequence

>Msa0302160

MDASTKTKKGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTERSTNASKEPKSPKPKAGKSPKKA*