Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880470 | XP_013446985.1 | 93.455 | 275 | 17 | 1 | 48 | 322 | 48 | 321 | 1.62e-141 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880470 | sp|Q9C5D3|HIP7_ARATH | 58.451 | 284 | 103 | 4 | 52 | 322 | 74 | 355 | 5.15e-76 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880470 | A0A072TUA8 | 93.455 | 275 | 17 | 1 | 48 | 322 | 48 | 321 | 7.75e-142 | 412 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa0880470 | 0.835485 | 1.633130e-56 | -8.615850e-47 |
| Msa0009760 | Msa0880470 | 0.812175 | 4.839288e-51 | -8.615850e-47 |
| Msa0046740 | Msa0880470 | 0.815370 | 9.574439e-52 | -8.615850e-47 |
| Msa0069330 | Msa0880470 | 0.822683 | 2.077524e-53 | -8.615850e-47 |
| Msa0076040 | Msa0880470 | 0.862901 | 3.648143e-64 | -8.615850e-47 |
| Msa0096800 | Msa0880470 | 0.973180 | 5.406047e-136 | -8.615850e-47 |
| Msa0104550 | Msa0880470 | 0.819440 | 1.160066e-52 | -8.615850e-47 |
| Msa0620200 | Msa0880470 | 0.976097 | 3.533767e-141 | -8.615850e-47 |
| Msa0620230 | Msa0880470 | 0.823351 | 1.451669e-53 | -8.615850e-47 |
| Msa0628420 | Msa0880470 | 0.803701 | 3.074843e-49 | -8.615850e-47 |
| Msa0638480 | Msa0880470 | 0.805404 | 1.357043e-49 | -8.615850e-47 |
| Msa0687020 | Msa0880470 | 0.803127 | 4.042902e-49 | -8.615850e-47 |
| Msa0697080 | Msa0880470 | 0.809831 | 1.557719e-50 | -8.615850e-47 |
| Msa0752700 | Msa0880470 | 0.812974 | 3.236404e-51 | -8.615850e-47 |
| Msa0788770 | Msa0880470 | 0.811308 | 7.471667e-51 | -8.615850e-47 |
| Msa0794970 | Msa0880470 | 0.810060 | 1.390602e-50 | -8.615850e-47 |
| Msa0808800 | Msa0880470 | 0.800866 | 1.178518e-48 | -8.615850e-47 |
| Msa0831100 | Msa0880470 | 0.801708 | 7.925163e-49 | -8.615850e-47 |
| Msa0123560 | Msa0880470 | 0.809225 | 2.102567e-50 | -8.615850e-47 |
| Msa0125540 | Msa0880470 | 0.805688 | 1.182891e-49 | -8.615850e-47 |
| Msa0134610 | Msa0880470 | 0.818963 | 1.489612e-52 | -8.615850e-47 |
| Msa0139320 | Msa0880470 | 0.822332 | 2.506308e-53 | -8.615850e-47 |
| Msa0147980 | Msa0880470 | 0.804907 | 1.724347e-49 | -8.615850e-47 |
| Msa0181610 | Msa0880470 | 0.852408 | 4.706808e-61 | -8.615850e-47 |
| Msa0199880 | Msa0880470 | 0.814331 | 1.627226e-51 | -8.615850e-47 |
| Msa0217670 | Msa0880470 | 0.810032 | 1.409857e-50 | -8.615850e-47 |
| Msa0223080 | Msa0880470 | 0.832285 | 1.031610e-55 | -8.615850e-47 |
| Msa0376630 | Msa0880470 | 0.815955 | 7.090493e-52 | -8.615850e-47 |
| Msa0389510 | Msa0880470 | 0.807891 | 4.049851e-50 | -8.615850e-47 |
| Msa0470530 | Msa0880470 | 0.804302 | 2.305879e-49 | -8.615850e-47 |
| Msa0477460 | Msa0880470 | 0.825616 | 4.254658e-54 | -8.615850e-47 |
| Msa0479170 | Msa0880470 | 0.801209 | 1.002921e-48 | -8.615850e-47 |
| Msa0259240 | Msa0880470 | 0.806638 | 7.462483e-50 | -8.615850e-47 |
| Msa0267920 | Msa0880470 | 0.806602 | 7.595864e-50 | -8.615850e-47 |
| Msa0296250 | Msa0880470 | 0.812718 | 3.682111e-51 | -8.615850e-47 |
| Msa0302160 | Msa0880470 | 0.837553 | 4.857800e-57 | -8.615850e-47 |
| Msa0315980 | Msa0880470 | 0.802677 | 5.007166e-49 | -8.615850e-47 |
| Msa0320590 | Msa0880470 | 0.813086 | 3.058220e-51 | -8.615850e-47 |
| Msa0336290 | Msa0880470 | 0.807792 | 4.252135e-50 | -8.615850e-47 |
| Msa0339490 | Msa0880470 | 0.840121 | 1.052148e-57 | -8.615850e-47 |
| Msa0521050 | Msa0880470 | 0.814336 | 1.622406e-51 | -8.615850e-47 |
| Msa0524500 | Msa0880470 | 0.828485 | 8.757881e-55 | -8.615850e-47 |
| Msa0537920 | Msa0880470 | 0.807849 | 4.135328e-50 | -8.615850e-47 |
| Msa0552810 | Msa0880470 | 0.805917 | 1.059173e-49 | -8.615850e-47 |
| Msa0571110 | Msa0880470 | 0.826253 | 3.002285e-54 | -8.615850e-47 |
| Msa0580230 | Msa0880470 | 0.816584 | 5.127807e-52 | -8.615850e-47 |
| Msa0580280 | Msa0880470 | 0.834749 | 2.504145e-56 | -8.615850e-47 |
| Msa0581070 | Msa0880470 | 0.813886 | 2.039836e-51 | -8.615850e-47 |
| Msa0880450 | Msa0880470 | 0.831033 | 2.098945e-55 | -8.615850e-47 |
| Msa0880470 | Msa0898760 | 0.812412 | 4.295952e-51 | -8.615850e-47 |
| Msa0880470 | Msa1013770 | 0.802539 | 5.347309e-49 | -8.615850e-47 |
| Msa0880470 | Msa1050910 | 0.809092 | 2.244418e-50 | -8.615850e-47 |
| Msa0880470 | Msa1078170 | 0.812782 | 3.564667e-51 | -8.615850e-47 |
| Msa0880470 | Msa1093840 | 0.809833 | 1.556097e-50 | -8.615850e-47 |
| Msa0880470 | Msa1123500 | 0.800801 | 1.215392e-48 | -8.615850e-47 |
| Msa0880470 | Msa1126510 | 0.807148 | 5.824074e-50 | -8.615850e-47 |
| Msa0880470 | Msa1127590 | 0.802010 | 6.873064e-49 | -8.615850e-47 |
| Msa0880470 | Msa1130980 | 0.824525 | 7.700008e-54 | -8.615850e-47 |
| Msa0880470 | Msa1174530 | 0.820109 | 8.157938e-53 | -8.615850e-47 |
| Msa0880470 | Msa1184370 | 0.809725 | 1.641687e-50 | -8.615850e-47 |
| Msa0880470 | Msa1227690 | 0.810684 | 1.019931e-50 | -8.615850e-47 |
| Msa0880470 | Msa1235250 | 0.823665 | 1.225951e-53 | -8.615850e-47 |
| Msa0880470 | Msa1251160 | 0.841776 | 3.869813e-58 | -8.615850e-47 |
| Msa0880470 | Msa1256470 | 0.811057 | 8.468861e-51 | -8.615850e-47 |
| Msa0880470 | Msa1276660 | 0.813085 | 3.060167e-51 | -8.615850e-47 |
| Msa0880470 | Msa1307950 | 0.807687 | 4.475418e-50 | -8.615850e-47 |
| Msa0880470 | Msa1361410 | 0.801818 | 7.524980e-49 | -8.615850e-47 |
| Msa0880470 | Msa1367590 | 0.812607 | 3.893686e-51 | -8.615850e-47 |
| Msa0880470 | Msa1373100 | 0.810408 | 1.169767e-50 | -8.615850e-47 |
| Msa0880470 | Msa1376650 | 0.808492 | 3.015529e-50 | -8.615850e-47 |
| Msa0880470 | Msa1413260 | 0.823913 | 1.072266e-53 | -8.615850e-47 |
| Msa0880470 | Msa1418340 | 0.826895 | 2.110798e-54 | -8.615850e-47 |
| Msa0880470 | Msa1421560 | 0.808694 | 2.730873e-50 | -8.615850e-47 |
| Msa0880470 | Msa1422950 | 0.810154 | 1.327585e-50 | -8.615850e-47 |
| Msa0880470 | Msa1425670 | 0.813701 | 2.240379e-51 | -8.615850e-47 |
| Msa0880470 | Msa1443930 | 0.814647 | 1.384703e-51 | -8.615850e-47 |
| Msa0880470 | Msa1446820 | 0.839764 | 1.303262e-57 | -8.615850e-47 |
| Msa0880470 | Msa1450280 | 0.801316 | 9.535451e-49 | -8.615850e-47 |
| Msa0880470 | Msa1451160 | 0.819479 | 1.136763e-52 | -8.615850e-47 |
| Msa0880470 | Msa1465080 | 0.814654 | 1.380262e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880470 | MtrunA17_Chr8g0386231 | 93.455 | 275 | 17 | 1 | 48 | 322 | 48 | 321 | 1.49e-145 | 412 |
| Msa0880470 | MtrunA17_Chr3g0132051 | 53.506 | 271 | 87 | 6 | 52 | 322 | 35 | 266 | 1.06e-79 | 243 |
| Msa0880470 | MtrunA17_Chr3g0132061 | 51.389 | 288 | 103 | 4 | 52 | 322 | 35 | 302 | 2.00e-76 | 236 |
| Msa0880470 | MtrunA17_Chr2g0290471 | 49.084 | 273 | 103 | 6 | 50 | 322 | 33 | 269 | 2.83e-53 | 176 |
| Msa0880470 | MtrunA17_Chr4g0001151 | 68.000 | 125 | 37 | 1 | 52 | 176 | 169 | 290 | 5.39e-48 | 164 |
| Msa0880470 | MtrunA17_Chr3g0094841 | 35.531 | 273 | 110 | 6 | 53 | 322 | 28 | 237 | 2.18e-41 | 144 |
| Msa0880470 | MtrunA17_Chr3g0128091 | 35.577 | 312 | 158 | 11 | 19 | 321 | 6 | 283 | 1.78e-32 | 122 |
| Msa0880470 | MtrunA17_Chr4g0028461 | 30.686 | 277 | 163 | 5 | 54 | 322 | 69 | 324 | 1.73e-30 | 117 |
| Msa0880470 | MtrunA17_Chr1g0180631 | 33.529 | 340 | 174 | 9 | 26 | 322 | 3 | 333 | 6.60e-29 | 113 |
| Msa0880470 | MtrunA17_Chr5g0429111 | 36.810 | 163 | 91 | 2 | 54 | 216 | 56 | 206 | 1.33e-28 | 112 |
| Msa0880470 | MtrunA17_Chr8g0337951 | 34.386 | 285 | 149 | 11 | 37 | 321 | 18 | 264 | 1.26e-27 | 108 |
| Msa0880470 | MtrunA17_Chr2g0327311 | 33.526 | 173 | 105 | 4 | 50 | 216 | 64 | 232 | 6.64e-24 | 100 |
| Msa0880470 | MtrunA17_Chr7g0264601 | 33.803 | 213 | 109 | 4 | 43 | 232 | 5 | 208 | 7.36e-22 | 94.4 |
| Msa0880470 | MtrunA17_Chr8g0343041 | 50.000 | 62 | 31 | 0 | 155 | 216 | 77 | 138 | 2.20e-14 | 72.4 |
| Msa0880470 | MtrunA17_Chr6g0454851 | 50.746 | 67 | 32 | 1 | 50 | 116 | 17 | 82 | 2.19e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880470 | AT5G50740.5 | 52.963 | 270 | 112 | 4 | 53 | 322 | 29 | 283 | 2.89e-84 | 256 |
| Msa0880470 | AT5G50740.1 | 52.963 | 270 | 112 | 4 | 53 | 322 | 29 | 283 | 2.89e-84 | 256 |
| Msa0880470 | AT5G63530.2 | 58.451 | 284 | 103 | 4 | 52 | 322 | 59 | 340 | 2.30e-77 | 240 |
| Msa0880470 | AT5G50740.3 | 50.000 | 322 | 129 | 5 | 1 | 322 | 1 | 290 | 2.67e-77 | 238 |
| Msa0880470 | AT5G63530.1 | 58.451 | 284 | 103 | 4 | 52 | 322 | 74 | 355 | 5.24e-77 | 239 |
| Msa0880470 | AT3G02960.1 | 39.114 | 271 | 104 | 6 | 52 | 322 | 37 | 246 | 2.62e-50 | 167 |
| Msa0880470 | AT5G50740.2 | 62.400 | 125 | 44 | 1 | 53 | 177 | 29 | 150 | 2.46e-46 | 154 |
| Msa0880470 | AT5G50740.4 | 51.412 | 177 | 66 | 3 | 1 | 177 | 1 | 157 | 5.68e-40 | 138 |
| Msa0880470 | AT5G24580.2 | 32.979 | 282 | 155 | 6 | 53 | 321 | 57 | 317 | 4.38e-32 | 122 |
| Msa0880470 | AT5G24580.4 | 32.979 | 282 | 155 | 6 | 53 | 321 | 58 | 318 | 4.90e-32 | 122 |
| Msa0880470 | AT5G24580.1 | 32.979 | 282 | 155 | 6 | 53 | 321 | 58 | 318 | 4.90e-32 | 122 |
| Msa0880470 | AT2G36950.1 | 31.751 | 337 | 161 | 9 | 53 | 322 | 52 | 386 | 1.31e-28 | 114 |
| Msa0880470 | AT5G24580.3 | 31.915 | 282 | 155 | 7 | 53 | 321 | 58 | 315 | 1.38e-28 | 112 |
| Msa0880470 | AT5G03380.1 | 35.556 | 270 | 135 | 8 | 26 | 264 | 3 | 264 | 3.44e-28 | 113 |
| Msa0880470 | AT5G03380.2 | 35.270 | 241 | 121 | 6 | 55 | 264 | 1 | 237 | 7.24e-26 | 106 |
| Msa0880470 | AT5G60800.1 | 35.252 | 278 | 150 | 6 | 53 | 322 | 28 | 283 | 7.91e-23 | 96.3 |
| Msa0880470 | AT5G60800.2 | 34.892 | 278 | 151 | 6 | 53 | 322 | 28 | 283 | 8.29e-22 | 94.0 |
| Msa0880470 | AT5G24580.5 | 31.076 | 251 | 139 | 6 | 84 | 321 | 2 | 231 | 8.78e-21 | 89.7 |
| Msa0880470 | AT1G29000.1 | 33.333 | 165 | 104 | 3 | 54 | 216 | 18 | 178 | 2.09e-19 | 87.0 |
| Msa0880470 | AT1G29000.2 | 33.333 | 165 | 104 | 3 | 54 | 216 | 18 | 178 | 2.09e-19 | 87.0 |
| Msa0880470 | AT2G28090.1 | 29.907 | 214 | 136 | 3 | 36 | 247 | 14 | 215 | 1.81e-16 | 78.2 |
Find 66 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGACTTTAAGCACAATTTC+TGG | 0.185344 | 6_1:-27113715 | None:intergenic |
| TCTTGTTCTGAAGGTGGTTT+AGG | 0.196858 | 6_1:-27114006 | None:intergenic |
| TCTCACAAGGTTGTTGTTAA+AGG | 0.201668 | 6_1:+27113904 | Msa0880470:CDS |
| TCTTCGTCTTTGGTTTCTTT+TGG | 0.203283 | 6_1:-27114722 | None:intergenic |
| GGTAATGATAAGGGTAATAT+TGG | 0.277814 | 6_1:+27115022 | Msa0880470:three_prime_UTR |
| TAAGGGTAATATTGGAATTA+TGG | 0.284369 | 6_1:+27115030 | Msa0880470:three_prime_UTR |
| CTTGTTCTGAAGGTGGTTTA+GGG | 0.292396 | 6_1:-27114005 | None:intergenic |
| TTCTTCTCTTCTTCTTTCTT+CGG | 0.322109 | 6_1:-27113628 | None:intergenic |
| TCCTCTACTTTCGTTTCCTC+TGG | 0.374047 | 6_1:-27113586 | None:intergenic |
| AGGTGGTGCAGAAGAAGTTA+AGG | 0.374215 | 6_1:+27114859 | Msa0880470:CDS |
| ATGATAATGATAATGAAATC+TGG | 0.375338 | 6_1:+27115072 | Msa0880470:three_prime_UTR |
| AGCTGCAGCTGCAGCTGCAG+AGG | 0.381633 | 6_1:+27114808 | Msa0880470:CDS |
| GGCACATCTTACCCAGGATA+TGG | 0.400133 | 6_1:-27115102 | None:intergenic |
| TACATGATAGAACAAGCATT+TGG | 0.401152 | 6_1:-27114992 | None:intergenic |
| TCTTTCTTCGGTGGTTCCTC+TGG | 0.408707 | 6_1:-27113616 | None:intergenic |
| ACTCTTTCAAGAACCTTCAA+TGG | 0.419505 | 6_1:-27113940 | None:intergenic |
| GCTGCAGCTGCAGCTGCAGA+GGG | 0.436837 | 6_1:+27114809 | Msa0880470:CDS |
| GAATATGTTTACAAGAGAAC+TGG | 0.441360 | 6_1:+27114653 | Msa0880470:CDS |
| GATCAGAAAGGGAGTGGTGA+AGG | 0.441866 | 6_1:+27114770 | Msa0880470:CDS |
| GAGAGAGATAGAAGCTAGGT+TGG | 0.445321 | 6_1:-27113368 | None:intergenic |
| AGGAGTTGAATCAGCTGAAC+CGG | 0.452591 | 6_1:+27114574 | Msa0880470:intron |
| TCTGGGTGAAAGCCATATCC+TGG | 0.459053 | 6_1:+27115090 | Msa0880470:three_prime_UTR |
| AAAATTTGAGGAGGGTAAGC+TGG | 0.466832 | 6_1:-27114956 | None:intergenic |
| GTAACTTCCTTAGATTCCTC+CGG | 0.468732 | 6_1:-27113688 | None:intergenic |
| AAAGTTCGTCGTTCACTCAA+AGG | 0.473903 | 6_1:+27113763 | Msa0880470:CDS |
| ACTAGTGAGTTCTTCAGATC+CGG | 0.476586 | 6_1:-27114593 | None:intergenic |
| CCACCTCCTCCATCACCACT+TGG | 0.479378 | 6_1:-27114842 | None:intergenic |
| TTCTCTTCTTCTTTCTTCGG+TGG | 0.482801 | 6_1:-27113625 | None:intergenic |
| GAAAGGGAGTGGTGAAGGAG+AGG | 0.503599 | 6_1:+27114775 | Msa0880470:CDS |
| GAAAGAGAAACCTAAGCCAC+AGG | 0.507799 | 6_1:+27114044 | Msa0880470:CDS |
| GATGGAAAACCAAGTGGTGA+TGG | 0.509668 | 6_1:+27114833 | Msa0880470:CDS |
| TGCAGAAGAAGTTAAGGTGG+TGG | 0.510388 | 6_1:+27114865 | Msa0880470:CDS |
| GTCAGTCACACTAAACCAAT+GGG | 0.518992 | 6_1:+27113435 | Msa0880470:exon |
| TCTGAAGGTGGTTTAGGGAT+CGG | 0.522573 | 6_1:-27114000 | None:intergenic |
| GCTGCAGCTGCAGAGGGAGA+TGG | 0.525345 | 6_1:+27114815 | Msa0880470:CDS |
| TGATAATGATAATGAAATCT+GGG | 0.533220 | 6_1:+27115073 | Msa0880470:three_prime_UTR |
| GGAAGAAAAGAAAGCTGAAG+AGG | 0.548605 | 6_1:+27114065 | Msa0880470:CDS |
| AACTCACTAGTGACAGTGAA+AGG | 0.549081 | 6_1:+27114605 | Msa0880470:CDS |
| AGAGAACCAACCTCTCCCAT+TGG | 0.550262 | 6_1:-27113450 | None:intergenic |
| AAAGTCTTCATGCATTGTGA+AGG | 0.559957 | 6_1:+27113730 | Msa0880470:CDS |
| TAAAACTCCGTACCATACCT+TGG | 0.562455 | 6_1:-27114920 | None:intergenic |
| AGAATCACTATCATAACCTT+AGG | 0.564388 | 6_1:-27114178 | None:intergenic |
| TAATCCACCAAGGTATGGTA+CGG | 0.565997 | 6_1:+27114913 | Msa0880470:CDS |
| CATCACTGAAAATTTGAGGA+GGG | 0.566558 | 6_1:-27114964 | None:intergenic |
| TGGTGCAGAAGAAGTTAAGG+TGG | 0.570601 | 6_1:+27114862 | Msa0880470:CDS |
| AGTGTGACTGACTGACTCAA+AGG | 0.570706 | 6_1:-27113424 | None:intergenic |
| AGTCAGTCACACTAAACCAA+TGG | 0.572674 | 6_1:+27113434 | Msa0880470:exon |
| CCAAGTGGTGATGGAGGAGG+TGG | 0.579532 | 6_1:+27114842 | Msa0880470:CDS |
| AAACCAAGTGGTGATGGAGG+AGG | 0.582262 | 6_1:+27114839 | Msa0880470:CDS |
| AACTCCGTACCATACCTTGG+TGG | 0.588756 | 6_1:-27114917 | None:intergenic |
| AGACGCATTGAGAAAATCAA+AGG | 0.589980 | 6_1:+27114244 | Msa0880470:CDS |
| TGAGGAGGGTAAGCTGGACC+AGG | 0.590722 | 6_1:-27114950 | None:intergenic |
| TACTGCAGGGAAAAGTACAT+AGG | 0.593196 | 6_1:-27115124 | None:intergenic |
| GGAAAACCAAGTGGTGATGG+AGG | 0.597768 | 6_1:+27114836 | Msa0880470:CDS |
| ACTGCAGGGAAAAGTACATA+GGG | 0.600268 | 6_1:-27115123 | None:intergenic |
| ACCAGAGGAAACGAAAGTAG+AGG | 0.601453 | 6_1:+27113585 | Msa0880470:CDS |
| CTGGGTGAAAGCCATATCCT+GGG | 0.602074 | 6_1:+27115091 | Msa0880470:three_prime_UTR |
| TACTGATTGCAAATCTCACA+AGG | 0.619184 | 6_1:+27113891 | Msa0880470:CDS |
| TCATCACTGAAAATTTGAGG+AGG | 0.625780 | 6_1:-27114965 | None:intergenic |
| TCACACTAAACCAATGGGAG+AGG | 0.633440 | 6_1:+27113440 | Msa0880470:exon |
| AGGTTCTTGAAAGAGTTCAG+AGG | 0.645167 | 6_1:+27113947 | Msa0880470:CDS |
| TAGAAGCTAGGTTGGTTCTG+CGG | 0.646213 | 6_1:-27113360 | None:intergenic |
| ACTTTAAGCACAATTTCTGG+CGG | 0.689016 | 6_1:-27113712 | None:intergenic |
| ACATAGGGCACATCTTACCC+AGG | 0.692217 | 6_1:-27115108 | None:intergenic |
| ATAGGAAGAAAAGAAACCAG+AGG | 0.703898 | 6_1:+27113570 | Msa0880470:intron |
| GAGGGAGATGGAAAACCAAG+TGG | 0.706478 | 6_1:+27114827 | Msa0880470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTAATAATATTGTTTC+TGG | + | chr6_1:27113522-27113541 | Msa0880470:intron | 15.0% |
| !!! | TAAAAATTTGGTAATGATAA+GGG | + | chr6_1:27115013-27115032 | Msa0880470:exon | 15.0% |
| !!! | CATTTTAATAATATTGTTTC+TGG | + | chr6_1:27113522-27113541 | Msa0880470:intron | 15.0% |
| !!! | TAAAAATTTGGTAATGATAA+GGG | + | chr6_1:27115013-27115032 | Msa0880470:exon | 15.0% |
| !!! | TTAAAAACACCGAAATTTTA+AGG | + | chr6_1:27113325-27113344 | Msa0880470:five_prime_UTR | 20.0% |
| !!! | CTTTTTTTGCCTTAAAATTT+CGG | - | chr6_1:27113337-27113356 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTTGTTTTGAAT+AGG | + | chr6_1:27113552-27113571 | Msa0880470:intron | 20.0% |
| !!! | AGAAAAAAAGTGTAAAGAAA+AGG | - | chr6_1:27113810-27113829 | None:intergenic | 20.0% |
| !! | TAATGATTAATTGTTTGTGA+TGG | + | chr6_1:27113843-27113862 | Msa0880470:intron | 20.0% |
| !! | AAATTTATCTGAATTTGTGA+TGG | + | chr6_1:27114119-27114138 | Msa0880470:intron | 20.0% |
| !!! | TTACTTTTATTTCATTCACT+TGG | + | chr6_1:27114311-27114330 | Msa0880470:intron | 20.0% |
| !! | CTTGATAAAATATTTGTAAG+TGG | + | chr6_1:27114485-27114504 | Msa0880470:intron | 20.0% |
| !! | TTAAAATTATATTCACATGC+AGG | + | chr6_1:27114554-27114573 | Msa0880470:intron | 20.0% |
| !!! | AATATTATTTTAATCCACCA+AGG | + | chr6_1:27114903-27114922 | Msa0880470:CDS | 20.0% |
| !! | TGTTCTATCATGTAAAAATT+TGG | + | chr6_1:27115001-27115020 | Msa0880470:exon | 20.0% |
| !!! | GTAAAAATTTGGTAATGATA+AGG | + | chr6_1:27115012-27115031 | Msa0880470:exon | 20.0% |
| !!! | ATGATAATGATAATGAAATC+TGG | + | chr6_1:27115072-27115091 | Msa0880470:three_prime_UTR | 20.0% |
| !!! | TGATAATGATAATGAAATCT+GGG | + | chr6_1:27115073-27115092 | Msa0880470:three_prime_UTR | 20.0% |
| !!! | TTAAAAACACCGAAATTTTA+AGG | + | chr6_1:27113325-27113344 | Msa0880470:five_prime_UTR | 20.0% |
| !!! | CTTTTTTTGCCTTAAAATTT+CGG | - | chr6_1:27113337-27113356 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTTGTTTTGAAT+AGG | + | chr6_1:27113552-27113571 | Msa0880470:intron | 20.0% |
| !!! | AGAAAAAAAGTGTAAAGAAA+AGG | - | chr6_1:27113810-27113829 | None:intergenic | 20.0% |
| !! | TAATGATTAATTGTTTGTGA+TGG | + | chr6_1:27113843-27113862 | Msa0880470:intron | 20.0% |
| !! | AAATTTATCTGAATTTGTGA+TGG | + | chr6_1:27114119-27114138 | Msa0880470:intron | 20.0% |
| !!! | TTACTTTTATTTCATTCACT+TGG | + | chr6_1:27114311-27114330 | Msa0880470:intron | 20.0% |
| !! | CTTGATAAAATATTTGTAAG+TGG | + | chr6_1:27114485-27114504 | Msa0880470:intron | 20.0% |
| !! | TTAAAATTATATTCACATGC+AGG | + | chr6_1:27114554-27114573 | Msa0880470:intron | 20.0% |
| !!! | AATATTATTTTAATCCACCA+AGG | + | chr6_1:27114903-27114922 | Msa0880470:CDS | 20.0% |
| !! | TGTTCTATCATGTAAAAATT+TGG | + | chr6_1:27115001-27115020 | Msa0880470:exon | 20.0% |
| !!! | GTAAAAATTTGGTAATGATA+AGG | + | chr6_1:27115012-27115031 | Msa0880470:exon | 20.0% |
| !!! | ATGATAATGATAATGAAATC+TGG | + | chr6_1:27115072-27115091 | Msa0880470:three_prime_UTR | 20.0% |
| !!! | TGATAATGATAATGAAATCT+GGG | + | chr6_1:27115073-27115092 | Msa0880470:three_prime_UTR | 20.0% |
| !!! | ATTTTTTTCTCTTGTTCTGA+AGG | - | chr6_1:27114018-27114037 | None:intergenic | 25.0% |
| ! | TTTATTTCATTCACTTGGTT+TGG | + | chr6_1:27114316-27114335 | Msa0880470:intron | 25.0% |
| !! | TTTTCATCACTGAAAATTTG+AGG | - | chr6_1:27114971-27114990 | None:intergenic | 25.0% |
| ! | TAAGGGTAATATTGGAATTA+TGG | + | chr6_1:27115030-27115049 | Msa0880470:three_prime_UTR | 25.0% |
| !!! | ATTTTTTTCTCTTGTTCTGA+AGG | - | chr6_1:27114018-27114037 | None:intergenic | 25.0% |
| ! | TTTATTTCATTCACTTGGTT+TGG | + | chr6_1:27114316-27114335 | Msa0880470:intron | 25.0% |
| !! | TTTTCATCACTGAAAATTTG+AGG | - | chr6_1:27114971-27114990 | None:intergenic | 25.0% |
| ! | TAAGGGTAATATTGGAATTA+TGG | + | chr6_1:27115030-27115049 | Msa0880470:three_prime_UTR | 25.0% |
| TTCTTCTCTTCTTCTTTCTT+CGG | - | chr6_1:27113631-27113650 | None:intergenic | 30.0% | |
| AAGACTTTAAGCACAATTTC+TGG | - | chr6_1:27113718-27113737 | None:intergenic | 30.0% | |
| !!! | TTGTTTGTGATGGATTTTTC+AGG | + | chr6_1:27113853-27113872 | Msa0880470:intron | 30.0% |
| !!! | TGTTTGTGATGGATTTTTCA+GGG | + | chr6_1:27113854-27113873 | Msa0880470:intron | 30.0% |
| TGTTGTTAAAGGAGAAAAAG+CGG | + | chr6_1:27113915-27113934 | Msa0880470:CDS | 30.0% | |
| AGAATCACTATCATAACCTT+AGG | - | chr6_1:27114181-27114200 | None:intergenic | 30.0% | |
| AAATCTGACAAATTCCTGAA+AGG | - | chr6_1:27114361-27114380 | None:intergenic | 30.0% | |
| GAATATGTTTACAAGAGAAC+TGG | + | chr6_1:27114653-27114672 | Msa0880470:CDS | 30.0% | |
| !!! | TTTGGATGTTCTTTTTTCTC+TGG | - | chr6_1:27114707-27114726 | None:intergenic | 30.0% |
| !!! | AGTTTTTTTCTCTTCGTCTT+TGG | - | chr6_1:27114735-27114754 | None:intergenic | 30.0% |
| AAGGTGAAAAAGATCAGAAA+GGG | + | chr6_1:27114759-27114778 | Msa0880470:CDS | 30.0% | |
| !!! | TATTTTAATCCACCAAGGTA+TGG | + | chr6_1:27114908-27114927 | Msa0880470:CDS | 30.0% |
| TACATGATAGAACAAGCATT+TGG | - | chr6_1:27114995-27115014 | None:intergenic | 30.0% | |
| GGTAATGATAAGGGTAATAT+TGG | + | chr6_1:27115022-27115041 | Msa0880470:three_prime_UTR | 30.0% | |
| !!! | ATTACACTTTTTCTACTGCA+GGG | - | chr6_1:27115140-27115159 | None:intergenic | 30.0% |
| TTCTTCTCTTCTTCTTTCTT+CGG | - | chr6_1:27113631-27113650 | None:intergenic | 30.0% | |
| AAGACTTTAAGCACAATTTC+TGG | - | chr6_1:27113718-27113737 | None:intergenic | 30.0% | |
| !!! | TTGTTTGTGATGGATTTTTC+AGG | + | chr6_1:27113853-27113872 | Msa0880470:intron | 30.0% |
| !!! | TGTTTGTGATGGATTTTTCA+GGG | + | chr6_1:27113854-27113873 | Msa0880470:intron | 30.0% |
| TGTTGTTAAAGGAGAAAAAG+CGG | + | chr6_1:27113915-27113934 | Msa0880470:CDS | 30.0% | |
| AGAATCACTATCATAACCTT+AGG | - | chr6_1:27114181-27114200 | None:intergenic | 30.0% | |
| AAATCTGACAAATTCCTGAA+AGG | - | chr6_1:27114361-27114380 | None:intergenic | 30.0% | |
| GAATATGTTTACAAGAGAAC+TGG | + | chr6_1:27114653-27114672 | Msa0880470:CDS | 30.0% | |
| !!! | TTTGGATGTTCTTTTTTCTC+TGG | - | chr6_1:27114707-27114726 | None:intergenic | 30.0% |
| !!! | AGTTTTTTTCTCTTCGTCTT+TGG | - | chr6_1:27114735-27114754 | None:intergenic | 30.0% |
| AAGGTGAAAAAGATCAGAAA+GGG | + | chr6_1:27114759-27114778 | Msa0880470:CDS | 30.0% | |
| !!! | TATTTTAATCCACCAAGGTA+TGG | + | chr6_1:27114908-27114927 | Msa0880470:CDS | 30.0% |
| TACATGATAGAACAAGCATT+TGG | - | chr6_1:27114995-27115014 | None:intergenic | 30.0% | |
| GGTAATGATAAGGGTAATAT+TGG | + | chr6_1:27115022-27115041 | Msa0880470:three_prime_UTR | 30.0% | |
| !!! | ATTACACTTTTTCTACTGCA+GGG | - | chr6_1:27115140-27115159 | None:intergenic | 30.0% |
| ATAGGAAGAAAAGAAACCAG+AGG | + | chr6_1:27113570-27113589 | Msa0880470:intron | 35.0% | |
| !!! | GGTTTTTTCTCTTCTTCTGT+CGG | - | chr6_1:27113670-27113689 | None:intergenic | 35.0% |
| GACAGAAGAAGAGAAAAAAC+CGG | + | chr6_1:27113669-27113688 | Msa0880470:CDS | 35.0% | |
| ! | ACTTTAAGCACAATTTCTGG+CGG | - | chr6_1:27113715-27113734 | None:intergenic | 35.0% |
| AAAGTCTTCATGCATTGTGA+AGG | + | chr6_1:27113730-27113749 | Msa0880470:CDS | 35.0% | |
| !!! | GTTTGTGATGGATTTTTCAG+GGG | + | chr6_1:27113855-27113874 | Msa0880470:intron | 35.0% |
| ! | TACTGATTGCAAATCTCACA+AGG | + | chr6_1:27113891-27113910 | Msa0880470:CDS | 35.0% |
| ! | TCTCACAAGGTTGTTGTTAA+AGG | + | chr6_1:27113904-27113923 | Msa0880470:CDS | 35.0% |
| ACTCTTTCAAGAACCTTCAA+TGG | - | chr6_1:27113943-27113962 | None:intergenic | 35.0% | |
| !!! | TTTTTCTCTTGTTCTGAAGG+TGG | - | chr6_1:27114015-27114034 | None:intergenic | 35.0% |
| TTATTATATGGTGCAGCCTA+AGG | + | chr6_1:27114162-27114181 | Msa0880470:intron | 35.0% | |
| AGACGCATTGAGAAAATCAA+AGG | + | chr6_1:27114244-27114263 | Msa0880470:CDS | 35.0% | |
| !! | TCTTCGTCTTTGGTTTCTTT+TGG | - | chr6_1:27114725-27114744 | None:intergenic | 35.0% |
| AGACGAAGAGAAAAAAACTG+AGG | + | chr6_1:27114736-27114755 | Msa0880470:CDS | 35.0% | |
| GAAGAGAAAAAAACTGAGGA+AGG | + | chr6_1:27114740-27114759 | Msa0880470:CDS | 35.0% | |
| GAAGGTGAAAAAGATCAGAA+AGG | + | chr6_1:27114758-27114777 | Msa0880470:CDS | 35.0% | |
| CATCACTGAAAATTTGAGGA+GGG | - | chr6_1:27114967-27114986 | None:intergenic | 35.0% | |
| TCATCACTGAAAATTTGAGG+AGG | - | chr6_1:27114968-27114987 | None:intergenic | 35.0% | |
| !!! | GATTACACTTTTTCTACTGC+AGG | - | chr6_1:27115141-27115160 | None:intergenic | 35.0% |
| ATAGGAAGAAAAGAAACCAG+AGG | + | chr6_1:27113570-27113589 | Msa0880470:intron | 35.0% | |
| !!! | GGTTTTTTCTCTTCTTCTGT+CGG | - | chr6_1:27113670-27113689 | None:intergenic | 35.0% |
| GACAGAAGAAGAGAAAAAAC+CGG | + | chr6_1:27113669-27113688 | Msa0880470:CDS | 35.0% | |
| ! | ACTTTAAGCACAATTTCTGG+CGG | - | chr6_1:27113715-27113734 | None:intergenic | 35.0% |
| AAAGTCTTCATGCATTGTGA+AGG | + | chr6_1:27113730-27113749 | Msa0880470:CDS | 35.0% | |
| !!! | GTTTGTGATGGATTTTTCAG+GGG | + | chr6_1:27113855-27113874 | Msa0880470:intron | 35.0% |
| ! | TACTGATTGCAAATCTCACA+AGG | + | chr6_1:27113891-27113910 | Msa0880470:CDS | 35.0% |
| ! | TCTCACAAGGTTGTTGTTAA+AGG | + | chr6_1:27113904-27113923 | Msa0880470:CDS | 35.0% |
| ACTCTTTCAAGAACCTTCAA+TGG | - | chr6_1:27113943-27113962 | None:intergenic | 35.0% | |
| !!! | TTTTTCTCTTGTTCTGAAGG+TGG | - | chr6_1:27114015-27114034 | None:intergenic | 35.0% |
| TTATTATATGGTGCAGCCTA+AGG | + | chr6_1:27114162-27114181 | Msa0880470:intron | 35.0% | |
| AGACGCATTGAGAAAATCAA+AGG | + | chr6_1:27114244-27114263 | Msa0880470:CDS | 35.0% | |
| !! | TCTTCGTCTTTGGTTTCTTT+TGG | - | chr6_1:27114725-27114744 | None:intergenic | 35.0% |
| AGACGAAGAGAAAAAAACTG+AGG | + | chr6_1:27114736-27114755 | Msa0880470:CDS | 35.0% | |
| GAAGAGAAAAAAACTGAGGA+AGG | + | chr6_1:27114740-27114759 | Msa0880470:CDS | 35.0% | |
| GAAGGTGAAAAAGATCAGAA+AGG | + | chr6_1:27114758-27114777 | Msa0880470:CDS | 35.0% | |
| CATCACTGAAAATTTGAGGA+GGG | - | chr6_1:27114967-27114986 | None:intergenic | 35.0% | |
| TCATCACTGAAAATTTGAGG+AGG | - | chr6_1:27114968-27114987 | None:intergenic | 35.0% | |
| !!! | GATTACACTTTTTCTACTGC+AGG | - | chr6_1:27115141-27115160 | None:intergenic | 35.0% |
| AGTCAGTCACACTAAACCAA+TGG | + | chr6_1:27113434-27113453 | Msa0880470:exon | 40.0% | |
| GTCAGTCACACTAAACCAAT+GGG | + | chr6_1:27113435-27113454 | Msa0880470:exon | 40.0% | |
| AGTAGAGGAGAAAAAACCAG+AGG | + | chr6_1:27113600-27113619 | Msa0880470:CDS | 40.0% | |
| TTCTCTTCTTCTTTCTTCGG+TGG | - | chr6_1:27113628-27113647 | None:intergenic | 40.0% | |
| ! | TTTTTCTCTTCTTCTGTCGG+TGG | - | chr6_1:27113667-27113686 | None:intergenic | 40.0% |
| AGAAGAAGAGAAAAAACCGG+AGG | + | chr6_1:27113672-27113691 | Msa0880470:CDS | 40.0% | |
| GAAAAAACCGGAGGAATCTA+AGG | + | chr6_1:27113681-27113700 | Msa0880470:CDS | 40.0% | |
| GTAACTTCCTTAGATTCCTC+CGG | - | chr6_1:27113691-27113710 | None:intergenic | 40.0% | |
| AAAGTTCGTCGTTCACTCAA+AGG | + | chr6_1:27113763-27113782 | Msa0880470:CDS | 40.0% | |
| AAAAGGCAAAACTCTTCACC+TGG | - | chr6_1:27113793-27113812 | None:intergenic | 40.0% | |
| AGAAAAAGCGGATCCATTGA+AGG | + | chr6_1:27113927-27113946 | Msa0880470:CDS | 40.0% | |
| AGGTTCTTGAAAGAGTTCAG+AGG | + | chr6_1:27113947-27113966 | Msa0880470:CDS | 40.0% | |
| !! | CTTGTTCTGAAGGTGGTTTA+GGG | - | chr6_1:27114008-27114027 | None:intergenic | 40.0% |
| !! | TCTTGTTCTGAAGGTGGTTT+AGG | - | chr6_1:27114009-27114028 | None:intergenic | 40.0% |
| ! | TTCTTTTCTTCCTGTGGCTT+AGG | - | chr6_1:27114057-27114076 | None:intergenic | 40.0% |
| ! | TCAGCTTTCTTTTCTTCCTG+TGG | - | chr6_1:27114063-27114082 | None:intergenic | 40.0% |
| GGAAGAAAAGAAAGCTGAAG+AGG | + | chr6_1:27114065-27114084 | Msa0880470:CDS | 40.0% | |
| !! | CTTGGTTTGGTTCAATTCTC+AGG | + | chr6_1:27114329-27114348 | Msa0880470:intron | 40.0% |
| ACTAGTGAGTTCTTCAGATC+CGG | - | chr6_1:27114596-27114615 | None:intergenic | 40.0% | |
| AACTCACTAGTGACAGTGAA+AGG | + | chr6_1:27114605-27114624 | Msa0880470:CDS | 40.0% | |
| GAAAAAGATCAGAAAGGGAG+TGG | + | chr6_1:27114764-27114783 | Msa0880470:CDS | 40.0% | |
| TAATCCACCAAGGTATGGTA+CGG | + | chr6_1:27114913-27114932 | Msa0880470:CDS | 40.0% | |
| TAAAACTCCGTACCATACCT+TGG | - | chr6_1:27114923-27114942 | None:intergenic | 40.0% | |
| !! | ACGGAGTTTTATGCATATCC+TGG | + | chr6_1:27114932-27114951 | Msa0880470:CDS | 40.0% |
| AAAATTTGAGGAGGGTAAGC+TGG | - | chr6_1:27114959-27114978 | None:intergenic | 40.0% | |
| ! | ACTGCAGGGAAAAGTACATA+GGG | - | chr6_1:27115126-27115145 | None:intergenic | 40.0% |
| ! | TACTGCAGGGAAAAGTACAT+AGG | - | chr6_1:27115127-27115146 | None:intergenic | 40.0% |
| AGTCAGTCACACTAAACCAA+TGG | + | chr6_1:27113434-27113453 | Msa0880470:exon | 40.0% | |
| GTCAGTCACACTAAACCAAT+GGG | + | chr6_1:27113435-27113454 | Msa0880470:exon | 40.0% | |
| AGTAGAGGAGAAAAAACCAG+AGG | + | chr6_1:27113600-27113619 | Msa0880470:CDS | 40.0% | |
| TTCTCTTCTTCTTTCTTCGG+TGG | - | chr6_1:27113628-27113647 | None:intergenic | 40.0% | |
| ! | TTTTTCTCTTCTTCTGTCGG+TGG | - | chr6_1:27113667-27113686 | None:intergenic | 40.0% |
| AGAAGAAGAGAAAAAACCGG+AGG | + | chr6_1:27113672-27113691 | Msa0880470:CDS | 40.0% | |
| GAAAAAACCGGAGGAATCTA+AGG | + | chr6_1:27113681-27113700 | Msa0880470:CDS | 40.0% | |
| GTAACTTCCTTAGATTCCTC+CGG | - | chr6_1:27113691-27113710 | None:intergenic | 40.0% | |
| AAAGTTCGTCGTTCACTCAA+AGG | + | chr6_1:27113763-27113782 | Msa0880470:CDS | 40.0% | |
| AAAAGGCAAAACTCTTCACC+TGG | - | chr6_1:27113793-27113812 | None:intergenic | 40.0% | |
| AGAAAAAGCGGATCCATTGA+AGG | + | chr6_1:27113927-27113946 | Msa0880470:CDS | 40.0% | |
| AGGTTCTTGAAAGAGTTCAG+AGG | + | chr6_1:27113947-27113966 | Msa0880470:CDS | 40.0% | |
| !! | CTTGTTCTGAAGGTGGTTTA+GGG | - | chr6_1:27114008-27114027 | None:intergenic | 40.0% |
| !! | TCTTGTTCTGAAGGTGGTTT+AGG | - | chr6_1:27114009-27114028 | None:intergenic | 40.0% |
| ! | TTCTTTTCTTCCTGTGGCTT+AGG | - | chr6_1:27114057-27114076 | None:intergenic | 40.0% |
| ! | TCAGCTTTCTTTTCTTCCTG+TGG | - | chr6_1:27114063-27114082 | None:intergenic | 40.0% |
| GGAAGAAAAGAAAGCTGAAG+AGG | + | chr6_1:27114065-27114084 | Msa0880470:CDS | 40.0% | |
| !! | CTTGGTTTGGTTCAATTCTC+AGG | + | chr6_1:27114329-27114348 | Msa0880470:intron | 40.0% |
| ACTAGTGAGTTCTTCAGATC+CGG | - | chr6_1:27114596-27114615 | None:intergenic | 40.0% | |
| AACTCACTAGTGACAGTGAA+AGG | + | chr6_1:27114605-27114624 | Msa0880470:CDS | 40.0% | |
| GAAAAAGATCAGAAAGGGAG+TGG | + | chr6_1:27114764-27114783 | Msa0880470:CDS | 40.0% | |
| TAATCCACCAAGGTATGGTA+CGG | + | chr6_1:27114913-27114932 | Msa0880470:CDS | 40.0% | |
| TAAAACTCCGTACCATACCT+TGG | - | chr6_1:27114923-27114942 | None:intergenic | 40.0% | |
| !! | ACGGAGTTTTATGCATATCC+TGG | + | chr6_1:27114932-27114951 | Msa0880470:CDS | 40.0% |
| AAAATTTGAGGAGGGTAAGC+TGG | - | chr6_1:27114959-27114978 | None:intergenic | 40.0% | |
| ! | ACTGCAGGGAAAAGTACATA+GGG | - | chr6_1:27115126-27115145 | None:intergenic | 40.0% |
| ! | TACTGCAGGGAAAAGTACAT+AGG | - | chr6_1:27115127-27115146 | None:intergenic | 40.0% |
| !! | TAGAAGCTAGGTTGGTTCTG+CGG | - | chr6_1:27113363-27113382 | None:intergenic | 45.0% |
| GAGAGAGATAGAAGCTAGGT+TGG | - | chr6_1:27113371-27113390 | None:intergenic | 45.0% | |
| GAGAGAGAGAGATAGAAGCT+AGG | - | chr6_1:27113375-27113394 | None:intergenic | 45.0% | |
| ! | AGTGTGACTGACTGACTCAA+AGG | - | chr6_1:27113427-27113446 | None:intergenic | 45.0% |
| TCACACTAAACCAATGGGAG+AGG | + | chr6_1:27113440-27113459 | Msa0880470:exon | 45.0% | |
| ACTAAACCAATGGGAGAGGT+TGG | + | chr6_1:27113444-27113463 | Msa0880470:intron | 45.0% | |
| ACCAGAGGAAACGAAAGTAG+AGG | + | chr6_1:27113585-27113604 | Msa0880470:CDS | 45.0% | |
| TCCTCTACTTTCGTTTCCTC+TGG | - | chr6_1:27113589-27113608 | None:intergenic | 45.0% | |
| ! | CGTTCACTCAAAGGTTTTCC+AGG | + | chr6_1:27113772-27113791 | Msa0880470:CDS | 45.0% |
| TCTGAAGGTGGTTTAGGGAT+CGG | - | chr6_1:27114003-27114022 | None:intergenic | 45.0% | |
| GAAAGAGAAACCTAAGCCAC+AGG | + | chr6_1:27114044-27114063 | Msa0880470:CDS | 45.0% | |
| TTCTCAGGTCTCATCCTTTC+AGG | + | chr6_1:27114344-27114363 | Msa0880470:intron | 45.0% | |
| AGGAGTTGAATCAGCTGAAC+CGG | + | chr6_1:27114574-27114593 | Msa0880470:intron | 45.0% | |
| GATGGAAAACCAAGTGGTGA+TGG | + | chr6_1:27114833-27114852 | Msa0880470:CDS | 45.0% | |
| AGGTGGTGCAGAAGAAGTTA+AGG | + | chr6_1:27114859-27114878 | Msa0880470:CDS | 45.0% | |
| TGGTGCAGAAGAAGTTAAGG+TGG | + | chr6_1:27114862-27114881 | Msa0880470:CDS | 45.0% | |
| TGCAGAAGAAGTTAAGGTGG+TGG | + | chr6_1:27114865-27114884 | Msa0880470:CDS | 45.0% | |
| !! | TAGAAGCTAGGTTGGTTCTG+CGG | - | chr6_1:27113363-27113382 | None:intergenic | 45.0% |
| GAGAGAGATAGAAGCTAGGT+TGG | - | chr6_1:27113371-27113390 | None:intergenic | 45.0% | |
| GAGAGAGAGAGATAGAAGCT+AGG | - | chr6_1:27113375-27113394 | None:intergenic | 45.0% | |
| ! | AGTGTGACTGACTGACTCAA+AGG | - | chr6_1:27113427-27113446 | None:intergenic | 45.0% |
| TCACACTAAACCAATGGGAG+AGG | + | chr6_1:27113440-27113459 | Msa0880470:exon | 45.0% | |
| ACTAAACCAATGGGAGAGGT+TGG | + | chr6_1:27113444-27113463 | Msa0880470:intron | 45.0% | |
| ACCAGAGGAAACGAAAGTAG+AGG | + | chr6_1:27113585-27113604 | Msa0880470:CDS | 45.0% | |
| TCCTCTACTTTCGTTTCCTC+TGG | - | chr6_1:27113589-27113608 | None:intergenic | 45.0% | |
| ! | CGTTCACTCAAAGGTTTTCC+AGG | + | chr6_1:27113772-27113791 | Msa0880470:CDS | 45.0% |
| TCTGAAGGTGGTTTAGGGAT+CGG | - | chr6_1:27114003-27114022 | None:intergenic | 45.0% | |
| GAAAGAGAAACCTAAGCCAC+AGG | + | chr6_1:27114044-27114063 | Msa0880470:CDS | 45.0% | |
| TTCTCAGGTCTCATCCTTTC+AGG | + | chr6_1:27114344-27114363 | Msa0880470:intron | 45.0% | |
| AGGAGTTGAATCAGCTGAAC+CGG | + | chr6_1:27114574-27114593 | Msa0880470:intron | 45.0% | |
| GATGGAAAACCAAGTGGTGA+TGG | + | chr6_1:27114833-27114852 | Msa0880470:CDS | 45.0% | |
| AGGTGGTGCAGAAGAAGTTA+AGG | + | chr6_1:27114859-27114878 | Msa0880470:CDS | 45.0% | |
| TGGTGCAGAAGAAGTTAAGG+TGG | + | chr6_1:27114862-27114881 | Msa0880470:CDS | 45.0% | |
| TGCAGAAGAAGTTAAGGTGG+TGG | + | chr6_1:27114865-27114884 | Msa0880470:CDS | 45.0% | |
| !!! | ATCATTTTTATTTTATTATA+TGG | + | chr6_1:27114150-27114169 | Msa0880470:intron | 5.0% |
| !!! | AGTTAAAATATTTTATAATA+AGG | - | chr6_1:27114467-27114486 | None:intergenic | 5.0% |
| !!! | ATCATTTTTATTTTATTATA+TGG | + | chr6_1:27114150-27114169 | Msa0880470:intron | 5.0% |
| !!! | AGTTAAAATATTTTATAATA+AGG | - | chr6_1:27114467-27114486 | None:intergenic | 5.0% |
| AGAGAACCAACCTCTCCCAT+TGG | - | chr6_1:27113453-27113472 | None:intergenic | 50.0% | |
| TCTTTCTTCGGTGGTTCCTC+TGG | - | chr6_1:27113619-27113638 | None:intergenic | 50.0% | |
| AAGTGGTCCTGCAAGTGCAA+AGG | + | chr6_1:27114502-27114521 | Msa0880470:intron | 50.0% | |
| AGTGGTCCTGCAAGTGCAAA+GGG | + | chr6_1:27114503-27114522 | Msa0880470:intron | 50.0% | |
| GATCAGAAAGGGAGTGGTGA+AGG | + | chr6_1:27114770-27114789 | Msa0880470:CDS | 50.0% | |
| GAGGGAGATGGAAAACCAAG+TGG | + | chr6_1:27114827-27114846 | Msa0880470:CDS | 50.0% | |
| !! | GGAAAACCAAGTGGTGATGG+AGG | + | chr6_1:27114836-27114855 | Msa0880470:CDS | 50.0% |
| !! | AAACCAAGTGGTGATGGAGG+AGG | + | chr6_1:27114839-27114858 | Msa0880470:CDS | 50.0% |
| AACTCCGTACCATACCTTGG+TGG | - | chr6_1:27114920-27114939 | None:intergenic | 50.0% | |
| TCTGGGTGAAAGCCATATCC+TGG | + | chr6_1:27115090-27115109 | Msa0880470:three_prime_UTR | 50.0% | |
| CTGGGTGAAAGCCATATCCT+GGG | + | chr6_1:27115091-27115110 | Msa0880470:three_prime_UTR | 50.0% | |
| GGCACATCTTACCCAGGATA+TGG | - | chr6_1:27115105-27115124 | None:intergenic | 50.0% | |
| ACATAGGGCACATCTTACCC+AGG | - | chr6_1:27115111-27115130 | None:intergenic | 50.0% | |
| AGAGAACCAACCTCTCCCAT+TGG | - | chr6_1:27113453-27113472 | None:intergenic | 50.0% | |
| TCTTTCTTCGGTGGTTCCTC+TGG | - | chr6_1:27113619-27113638 | None:intergenic | 50.0% | |
| AAGTGGTCCTGCAAGTGCAA+AGG | + | chr6_1:27114502-27114521 | Msa0880470:intron | 50.0% | |
| AGTGGTCCTGCAAGTGCAAA+GGG | + | chr6_1:27114503-27114522 | Msa0880470:intron | 50.0% | |
| GATCAGAAAGGGAGTGGTGA+AGG | + | chr6_1:27114770-27114789 | Msa0880470:CDS | 50.0% | |
| GAGGGAGATGGAAAACCAAG+TGG | + | chr6_1:27114827-27114846 | Msa0880470:CDS | 50.0% | |
| !! | GGAAAACCAAGTGGTGATGG+AGG | + | chr6_1:27114836-27114855 | Msa0880470:CDS | 50.0% |
| !! | AAACCAAGTGGTGATGGAGG+AGG | + | chr6_1:27114839-27114858 | Msa0880470:CDS | 50.0% |
| AACTCCGTACCATACCTTGG+TGG | - | chr6_1:27114920-27114939 | None:intergenic | 50.0% | |
| TCTGGGTGAAAGCCATATCC+TGG | + | chr6_1:27115090-27115109 | Msa0880470:three_prime_UTR | 50.0% | |
| CTGGGTGAAAGCCATATCCT+GGG | + | chr6_1:27115091-27115110 | Msa0880470:three_prime_UTR | 50.0% | |
| GGCACATCTTACCCAGGATA+TGG | - | chr6_1:27115105-27115124 | None:intergenic | 50.0% | |
| ACATAGGGCACATCTTACCC+AGG | - | chr6_1:27115111-27115130 | None:intergenic | 50.0% | |
| GTCACACCCTTTGCACTTGC+AGG | - | chr6_1:27114512-27114531 | None:intergenic | 55.0% | |
| GAAAGGGAGTGGTGAAGGAG+AGG | + | chr6_1:27114775-27114794 | Msa0880470:CDS | 55.0% | |
| GTCACACCCTTTGCACTTGC+AGG | - | chr6_1:27114512-27114531 | None:intergenic | 55.0% | |
| GAAAGGGAGTGGTGAAGGAG+AGG | + | chr6_1:27114775-27114794 | Msa0880470:CDS | 55.0% | |
| CCACCTCCTCCATCACCACT+TGG | - | chr6_1:27114845-27114864 | None:intergenic | 60.0% | |
| !! | CCAAGTGGTGATGGAGGAGG+TGG | + | chr6_1:27114842-27114861 | Msa0880470:CDS | 60.0% |
| TGAGGAGGGTAAGCTGGACC+AGG | - | chr6_1:27114953-27114972 | None:intergenic | 60.0% | |
| CCACCTCCTCCATCACCACT+TGG | - | chr6_1:27114845-27114864 | None:intergenic | 60.0% | |
| !! | CCAAGTGGTGATGGAGGAGG+TGG | + | chr6_1:27114842-27114861 | Msa0880470:CDS | 60.0% |
| TGAGGAGGGTAAGCTGGACC+AGG | - | chr6_1:27114953-27114972 | None:intergenic | 60.0% | |
| AGCTGCAGCTGCAGCTGCAG+AGG | + | chr6_1:27114808-27114827 | Msa0880470:CDS | 65.0% | |
| GCTGCAGCTGCAGCTGCAGA+GGG | + | chr6_1:27114809-27114828 | Msa0880470:CDS | 65.0% | |
| GCTGCAGCTGCAGAGGGAGA+TGG | + | chr6_1:27114815-27114834 | Msa0880470:CDS | 65.0% | |
| AGCTGCAGCTGCAGCTGCAG+AGG | + | chr6_1:27114808-27114827 | Msa0880470:CDS | 65.0% | |
| GCTGCAGCTGCAGCTGCAGA+GGG | + | chr6_1:27114809-27114828 | Msa0880470:CDS | 65.0% | |
| GCTGCAGCTGCAGAGGGAGA+TGG | + | chr6_1:27114815-27114834 | Msa0880470:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 27113286 | 27115276 | 27113286 | ID=Msa0880470;Name=Msa0880470 |
| chr6_1 | mRNA | 27113286 | 27115276 | 27113286 | ID=Msa0880470-mRNA-1;Parent=Msa0880470;Name=Msa0880470-mRNA-1;_AED=0.01;_eAED=0.01;_QI=167|1|1|1|1|1|5|261|322 |
| chr6_1 | exon | 27113286 | 27113461 | 27113286 | ID=Msa0880470-mRNA-1:exon:6639;Parent=Msa0880470-mRNA-1 |
| chr6_1 | exon | 27113574 | 27113793 | 27113574 | ID=Msa0880470-mRNA-1:exon:6640;Parent=Msa0880470-mRNA-1 |
| chr6_1 | exon | 27113875 | 27114086 | 27113875 | ID=Msa0880470-mRNA-1:exon:6641;Parent=Msa0880470-mRNA-1 |
| chr6_1 | exon | 27114178 | 27114265 | 27114178 | ID=Msa0880470-mRNA-1:exon:6642;Parent=Msa0880470-mRNA-1 |
| chr6_1 | exon | 27114576 | 27115276 | 27114576 | ID=Msa0880470-mRNA-1:exon:6643;Parent=Msa0880470-mRNA-1 |
| chr6_1 | five_prime_UTR | 27113286 | 27113452 | 27113286 | ID=Msa0880470-mRNA-1:five_prime_utr;Parent=Msa0880470-mRNA-1 |
| chr6_1 | CDS | 27113453 | 27113461 | 27113453 | ID=Msa0880470-mRNA-1:cds;Parent=Msa0880470-mRNA-1 |
| chr6_1 | CDS | 27113574 | 27113793 | 27113574 | ID=Msa0880470-mRNA-1:cds;Parent=Msa0880470-mRNA-1 |
| chr6_1 | CDS | 27113875 | 27114086 | 27113875 | ID=Msa0880470-mRNA-1:cds;Parent=Msa0880470-mRNA-1 |
| chr6_1 | CDS | 27114178 | 27114265 | 27114178 | ID=Msa0880470-mRNA-1:cds;Parent=Msa0880470-mRNA-1 |
| chr6_1 | CDS | 27114576 | 27115015 | 27114576 | ID=Msa0880470-mRNA-1:cds;Parent=Msa0880470-mRNA-1 |
| chr6_1 | three_prime_UTR | 27115016 | 27115276 | 27115016 | ID=Msa0880470-mRNA-1:three_prime_utr;Parent=Msa0880470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
