AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0223080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0223080 MtrunA17_Chr2g0327931 98.039 153 3 0 1 153 1 153 1.24e-103 293
Msa0223080 MtrunA17_Chr4g0031041 94.074 135 5 2 19 153 14 145 1.18e-83 242
Msa0223080 MtrunA17_Chr4g0035621 92.208 154 9 2 1 153 1 152 1.09e-81 237
Msa0223080 MtrunA17_Chr2g0327951 88.889 153 12 2 1 153 38 185 7.25e-81 236
Msa0223080 MtrunA17_Chr4g0031651 91.558 154 6 3 1 153 1 148 6.80e-79 230
Msa0223080 MtrunA17_Chr4g0031001 91.558 154 6 3 1 153 1 148 2.56e-78 229
Msa0223080 MtrunA17_Chr4g0032301 90.260 154 8 3 1 153 1 148 7.92e-77 225
Msa0223080 MtrunA17_Chr8g0379311 97.727 132 2 1 1 131 1 132 3.96e-74 218
Msa0223080 MtrunA17_Chr7g0272611 81.203 133 21 2 9 138 13 144 2.81e-71 211
Msa0223080 MtrunA17_Chr7g0268831 75.000 128 26 3 3 129 6 128 4.94e-60 182
Msa0223080 MtrunA17_Chr7g0259151 71.875 128 33 1 2 129 4 128 1.32e-59 181
Msa0223080 MtrunA17_Chr7g0273351 73.438 128 29 2 3 129 2 125 2.27e-59 180
Msa0223080 MtrunA17_Chr2g0319191 74.790 119 30 0 10 128 3 121 1.27e-58 178
Msa0223080 MtrunA17_Chr7g0273331 73.228 127 31 1 3 129 58 181 1.33e-58 180
Msa0223080 MtrunA17_Chr2g0319181 73.950 119 31 0 10 128 3 121 1.45e-57 176
Msa0223080 MtrunA17_Chr6g0449661 64.754 122 29 3 23 138 85 198 3.59e-46 149
Msa0223080 MtrunA17_Chr4g0031031 76.147 109 17 2 44 152 10 109 8.13e-46 145
Msa0223080 MtrunA17_Chr3g0119971 64.463 121 29 3 24 138 81 193 1.04e-45 147
Msa0223080 MtrunA17_Chr7g0273341 71.296 108 20 2 22 129 57 153 2.51e-45 145
Msa0223080 MtrunA17_Chr1g0148961 59.821 112 43 2 20 130 23 133 7.11e-36 120
Msa0223080 MtrunA17_Chr1g0148951 59.821 112 43 2 20 130 23 133 7.11e-36 120
Msa0223080 MtrunA17_Chr1g0211651 59.633 109 42 2 20 127 20 127 6.27e-35 118
Msa0223080 MtrunA17_Chr1g0184901 61.538 104 38 2 25 127 28 130 2.94e-34 116
Msa0223080 MtrunA17_Chr1g0183701 61.644 73 28 0 66 138 30 102 9.55e-27 96.7
Msa0223080 MtrunA17_Chr4g0024701 49.524 105 33 2 23 127 26 110 5.06e-22 85.1
Msa0223080 MtrunA17_Chr4g0000531 60.000 55 22 0 84 138 5 59 8.33e-16 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0223080 AT5G02560.1 80.519 154 28 2 1 153 1 153 3.36e-78 229
Msa0223080 AT5G02560.2 69.663 178 28 3 1 153 1 177 2.38e-73 218
Msa0223080 AT5G27670.1 75.000 152 32 2 2 153 5 150 3.60e-73 216
Msa0223080 AT5G59870.1 73.377 154 36 2 1 153 1 150 1.42e-72 214
Msa0223080 AT1G51060.1 76.667 120 28 0 10 129 3 122 7.36e-61 184
Msa0223080 AT4G27230.2 73.984 123 32 0 10 132 3 125 1.39e-59 181
Msa0223080 AT4G27230.1 73.984 123 32 0 10 132 3 125 1.39e-59 181
Msa0223080 AT3G20670.1 71.318 129 37 0 10 138 3 131 3.01e-59 180
Msa0223080 AT5G54640.1 74.790 119 30 0 10 128 3 121 3.25e-58 177
Msa0223080 AT1G08880.1 72.222 126 32 1 7 129 3 128 3.71e-58 178
Msa0223080 AT1G54690.1 73.171 123 30 1 10 129 6 128 9.00e-58 177
Msa0223080 AT2G38810.1 59.821 112 43 2 20 130 25 135 2.08e-36 122
Msa0223080 AT2G38810.4 59.821 112 43 2 20 130 25 135 2.08e-36 122
Msa0223080 AT2G38810.3 59.821 112 43 2 20 130 25 135 2.08e-36 122
Msa0223080 AT2G38810.2 59.821 112 43 2 20 130 25 135 2.08e-36 122
Msa0223080 AT1G52740.1 61.905 105 38 2 24 127 27 130 1.35e-34 118
Msa0223080 AT3G54560.1 59.259 108 42 2 24 130 29 135 2.47e-34 117
Msa0223080 AT3G54560.2 59.259 108 42 2 24 130 29 135 2.47e-34 117
Msa0223080 AT4G13570.1 47.826 92 46 2 31 121 28 118 7.97e-20 79.7
Msa0223080 AT4G13570.2 47.253 91 46 2 32 121 35 124 1.74e-19 79.0

Find 61 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACTCCATAGACAATTTA+AGG 0.186735 2_1:+72560693 None:intergenic
CCATTTCCGAGATTGGAATT+TGG 0.219353 2_1:+72561425 None:intergenic
AACCTAATCTAAGCCTTCTT+TGG 0.260442 2_1:+72560866 None:intergenic
GCGTTTGAAATGATGTAATT+TGG 0.268471 2_1:-72560771 Msa0223080:three_prime_UTR
GTAGACCTTTCAGTCTTCTT+AGG 0.271890 2_1:+72560938 None:intergenic
TATTTGCCTTAAATTGTCTA+TGG 0.279063 2_1:-72560699 Msa0223080:three_prime_UTR
CTTGCGTCCATTTCCGAGAT+TGG 0.309548 2_1:+72561418 None:intergenic
GGCTTAGATTAGGTTTCTTA+TGG 0.319196 2_1:-72560858 Msa0223080:exon
GTCTTCTTAGGCAAAAGAAC+AGG 0.334824 2_1:+72560950 None:intergenic
ACCAGCTCCTTTCTTCGTCT+TGG 0.348361 2_1:+72561393 None:intergenic
TTATGTTTAGGTTCTTGAAT+TGG 0.357612 2_1:-72561113 Msa0223080:intron
AGAACAGCGGCGAGGTAAAC+AGG 0.381456 2_1:+72561238 None:intergenic
AAAAGAACAGGGTTAATGTT+TGG 0.382061 2_1:+72560962 None:intergenic
CAATTTCCAGTTGGAAGAAT+CGG 0.382886 2_1:-72561310 Msa0223080:CDS
TGTGTGTATAATTGCGCTTT+AGG 0.395647 2_1:-72560822 Msa0223080:three_prime_UTR
GCCTTAGGCTTAGGAGACTT+TGG 0.397268 2_1:+72560899 None:intergenic
CTCCAAAGAAGGCTTAGATT+AGG 0.399064 2_1:-72560868 Msa0223080:exon
GACTTTCCAGCCTTAGGCTT+AGG 0.400283 2_1:+72560890 None:intergenic
CTGGTCACAGACTTCTTCCT+TGG 0.400754 2_1:+72561352 None:intergenic
TTTGGAGACTTTCCAGCCTT+AGG 0.406671 2_1:+72560884 None:intergenic
CCAAATTCCAATCTCGGAAA+TGG 0.413559 2_1:-72561425 Msa0223080:exon
GAATTCGGTGTGAAATGAAA+TGG 0.427452 2_1:+72561468 None:intergenic
TGATGTAATTTGGAAGTCTC+TGG 0.433364 2_1:-72560761 Msa0223080:three_prime_UTR
GTTTAGGTTCTTGAATTGGC+TGG 0.434556 2_1:-72561109 Msa0223080:intron
TAACGGCCGATTCTTCCAAC+TGG 0.469071 2_1:+72561304 None:intergenic
AGGGTTCCAAATTCCAATCT+CGG 0.476240 2_1:-72561431 Msa0223080:five_prime_UTR
AAAGGAGCTGGTGGAAGGAA+AGG 0.477487 2_1:-72561382 Msa0223080:CDS
AATTCCAAGGCACGTGTTGT+TGG 0.477559 2_1:-72561053 Msa0223080:CDS
GGAGCTGGTGGAAGGAAAGG+TGG 0.481033 2_1:-72561379 Msa0223080:CDS
GCAAGCACCAAGACGAAGAA+AGG 0.482883 2_1:-72561400 Msa0223080:CDS
ACAGCCAACAACACGTGCCT+TGG 0.485674 2_1:+72561049 None:intergenic
TTGTAACATCTAATCGTGTA+AGG 0.486152 2_1:+72560579 None:intergenic
AAGACCAGCTCTGATGGATC+TGG 0.491289 2_1:+72561333 None:intergenic
ATCTTCCTTTCTTCAAGTAA+CGG 0.498085 2_1:+72561287 None:intergenic
AAATTGAAGACCAGCTCTGA+TGG 0.498711 2_1:+72561327 None:intergenic
TACGCTCAACGTGTTGGTAC+TGG 0.502701 2_1:-72561265 Msa0223080:CDS
TGTATAATTGCGCTTTAGGT+TGG 0.511963 2_1:-72560818 Msa0223080:three_prime_UTR
TGTGAGAAATGATGAAGAGC+TGG 0.520971 2_1:-72561029 Msa0223080:CDS
CACGTGATAACAAGAAGAAT+AGG 0.529318 2_1:-72561078 Msa0223080:CDS
GGCTGGAAAGTCTCCAAAGA+AGG 0.542007 2_1:-72560879 Msa0223080:CDS
AAGTCTCCTAAGCCTAAGGC+TGG 0.542736 2_1:-72560896 Msa0223080:CDS
ATCGGCCGTTACTTGAAGAA+AGG 0.544708 2_1:-72561292 Msa0223080:CDS
ACCAAAGTCTCCTAAGCCTA+AGG 0.550123 2_1:-72560900 Msa0223080:CDS
GTGACCAGATCCATCAGAGC+TGG 0.553138 2_1:-72561337 Msa0223080:CDS
CGAAGAAAGGAGCTGGTGGA+AGG 0.557443 2_1:-72561387 Msa0223080:CDS
AAGGTCTACTAATGCTAGCA+AGG 0.572544 2_1:-72560924 Msa0223080:CDS
ACCAAGACGAAGAAAGGAGC+TGG 0.579581 2_1:-72561394 Msa0223080:CDS
GAGCTGGGAAAATTGTTAGC+TGG 0.589509 2_1:-72561013 Msa0223080:CDS
GGAAGATACGCTCAACGTGT+TGG 0.597552 2_1:-72561271 Msa0223080:CDS
GCTGGTCTTCAATTTCCAGT+TGG 0.598252 2_1:-72561319 Msa0223080:CDS
GAAGGAAAGGTGGAGGACCA+AGG 0.610388 2_1:-72561369 Msa0223080:CDS
TCTTCTTAGGCAAAAGAACA+GGG 0.618533 2_1:+72560951 None:intergenic
GCTGGTGGAAGGAAAGGTGG+AGG 0.624747 2_1:-72561376 Msa0223080:CDS
AGAAGAATAGGATAATTCCA+AGG 0.643694 2_1:-72561066 Msa0223080:CDS
GTGAGAAATGATGAAGAGCT+GGG 0.654622 2_1:-72561028 Msa0223080:CDS
AAGACGAAGAAAGGAGCTGG+TGG 0.662071 2_1:-72561391 Msa0223080:CDS
TCTTGAATATCTCGCTGCTG+AGG 0.665898 2_1:-72561218 Msa0223080:intron
AGCGAGATATTCAAGAACAG+CGG 0.706002 2_1:+72561225 None:intergenic
GATATTCAAGAACAGCGGCG+AGG 0.723455 2_1:+72561230 None:intergenic
GCTGGTGTAACAATTGCACA+TGG 0.750058 2_1:-72560995 Msa0223080:CDS
GGTGTAACAATTGCACATGG+TGG 0.783361 2_1:-72560992 Msa0223080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAAACATAAAAATAAAATT+AGG + chr2_1:72560887-72560906 None:intergenic 10.0%
!!! CTAATTTTATTTTTATGTTT+AGG - chr2_1:72560885-72560904 Msa0223080:CDS 10.0%
!! CTAAACATAAAAATAAAATT+AGG + chr2_1:72560887-72560906 None:intergenic 10.0%
!!! CTAATTTTATTTTTATGTTT+AGG - chr2_1:72560885-72560904 Msa0223080:CDS 10.0%
!!! TAACTTTTTTGCTACGAATT+CGG + chr2_1:72560560-72560579 None:intergenic 25.0%
! AATTCGTAGCAAAAAAGTTA+GGG - chr2_1:72560560-72560579 Msa0223080:three_prime_UTR 25.0%
! CAAAATTAGGGTTACAAAAT+TGG + chr2_1:72560854-72560873 None:intergenic 25.0%
! GGGTTACAAATTCAAAATTA+GGG + chr2_1:72560866-72560885 None:intergenic 25.0%
! AGGGTTACAAATTCAAAATT+AGG + chr2_1:72560867-72560886 None:intergenic 25.0%
!! TTATGTTTAGGTTCTTGAAT+TGG - chr2_1:72560897-72560916 Msa0223080:CDS 25.0%
! TATTTGCCTTAAATTGTCTA+TGG - chr2_1:72561311-72561330 Msa0223080:CDS 25.0%
!!! TAACTTTTTTGCTACGAATT+CGG + chr2_1:72560560-72560579 None:intergenic 25.0%
! AATTCGTAGCAAAAAAGTTA+GGG - chr2_1:72560560-72560579 Msa0223080:three_prime_UTR 25.0%
! CAAAATTAGGGTTACAAAAT+TGG + chr2_1:72560854-72560873 None:intergenic 25.0%
! GGGTTACAAATTCAAAATTA+GGG + chr2_1:72560866-72560885 None:intergenic 25.0%
! AGGGTTACAAATTCAAAATT+AGG + chr2_1:72560867-72560886 None:intergenic 25.0%
!! TTATGTTTAGGTTCTTGAAT+TGG - chr2_1:72560897-72560916 Msa0223080:CDS 25.0%
! TATTTGCCTTAAATTGTCTA+TGG - chr2_1:72561311-72561330 Msa0223080:CDS 25.0%
! ATGAAATGGAAGATTTTGAG+TGG + chr2_1:72560531-72560550 None:intergenic 30.0%
GAATTCGTAGCAAAAAAGTT+AGG - chr2_1:72560559-72560578 Msa0223080:three_prime_UTR 30.0%
ATCTTCCTTTCTTCAAGTAA+CGG + chr2_1:72560726-72560745 None:intergenic 30.0%
AATCAAAGATCATACGAAAG+AGG + chr2_1:72560830-72560849 None:intergenic 30.0%
AGAAGAATAGGATAATTCCA+AGG - chr2_1:72560944-72560963 Msa0223080:CDS 30.0%
AAAAGAACAGGGTTAATGTT+TGG + chr2_1:72561051-72561070 None:intergenic 30.0%
! GCGTTTGAAATGATGTAATT+TGG - chr2_1:72561239-72561258 Msa0223080:CDS 30.0%
CAAACTCCATAGACAATTTA+AGG + chr2_1:72561320-72561339 None:intergenic 30.0%
TTGTAACATCTAATCGTGTA+AGG + chr2_1:72561434-72561453 None:intergenic 30.0%
! ATGAAATGGAAGATTTTGAG+TGG + chr2_1:72560531-72560550 None:intergenic 30.0%
GAATTCGTAGCAAAAAAGTT+AGG - chr2_1:72560559-72560578 Msa0223080:three_prime_UTR 30.0%
ATCTTCCTTTCTTCAAGTAA+CGG + chr2_1:72560726-72560745 None:intergenic 30.0%
AATCAAAGATCATACGAAAG+AGG + chr2_1:72560830-72560849 None:intergenic 30.0%
AGAAGAATAGGATAATTCCA+AGG - chr2_1:72560944-72560963 Msa0223080:CDS 30.0%
AAAAGAACAGGGTTAATGTT+TGG + chr2_1:72561051-72561070 None:intergenic 30.0%
! GCGTTTGAAATGATGTAATT+TGG - chr2_1:72561239-72561258 Msa0223080:CDS 30.0%
CAAACTCCATAGACAATTTA+AGG + chr2_1:72561320-72561339 None:intergenic 30.0%
TTGTAACATCTAATCGTGTA+AGG + chr2_1:72561434-72561453 None:intergenic 30.0%
!! GAATTCGGTGTGAAATGAAA+TGG + chr2_1:72560545-72560564 None:intergenic 35.0%
CAATTTCCAGTTGGAAGAAT+CGG - chr2_1:72560700-72560719 Msa0223080:three_prime_UTR 35.0%
CACGTGATAACAAGAAGAAT+AGG - chr2_1:72560932-72560951 Msa0223080:CDS 35.0%
TCTTCTTAGGCAAAAGAACA+GGG + chr2_1:72561062-72561081 None:intergenic 35.0%
! TTTTGCCTAAGAAGACTGAA+AGG - chr2_1:72561067-72561086 Msa0223080:CDS 35.0%
AACCTAATCTAAGCCTTCTT+TGG + chr2_1:72561147-72561166 None:intergenic 35.0%
GGCTTAGATTAGGTTTCTTA+TGG - chr2_1:72561152-72561171 Msa0223080:intron 35.0%
TGTGTGTATAATTGCGCTTT+AGG - chr2_1:72561188-72561207 Msa0223080:intron 35.0%
! TGTATAATTGCGCTTTAGGT+TGG - chr2_1:72561192-72561211 Msa0223080:intron 35.0%
!!! TTAGGTTGGTGTTTTGTAAC+TGG - chr2_1:72561206-72561225 Msa0223080:intron 35.0%
TGATGTAATTTGGAAGTCTC+TGG - chr2_1:72561249-72561268 Msa0223080:CDS 35.0%
!! GAATTCGGTGTGAAATGAAA+TGG + chr2_1:72560545-72560564 None:intergenic 35.0%
CAATTTCCAGTTGGAAGAAT+CGG - chr2_1:72560700-72560719 Msa0223080:three_prime_UTR 35.0%
CACGTGATAACAAGAAGAAT+AGG - chr2_1:72560932-72560951 Msa0223080:CDS 35.0%
TCTTCTTAGGCAAAAGAACA+GGG + chr2_1:72561062-72561081 None:intergenic 35.0%
! TTTTGCCTAAGAAGACTGAA+AGG - chr2_1:72561067-72561086 Msa0223080:CDS 35.0%
AACCTAATCTAAGCCTTCTT+TGG + chr2_1:72561147-72561166 None:intergenic 35.0%
GGCTTAGATTAGGTTTCTTA+TGG - chr2_1:72561152-72561171 Msa0223080:intron 35.0%
TGTGTGTATAATTGCGCTTT+AGG - chr2_1:72561188-72561207 Msa0223080:intron 35.0%
! TGTATAATTGCGCTTTAGGT+TGG - chr2_1:72561192-72561211 Msa0223080:intron 35.0%
!!! TTAGGTTGGTGTTTTGTAAC+TGG - chr2_1:72561206-72561225 Msa0223080:intron 35.0%
TGATGTAATTTGGAAGTCTC+TGG - chr2_1:72561249-72561268 Msa0223080:CDS 35.0%
AGGGTTCCAAATTCCAATCT+CGG - chr2_1:72560579-72560598 Msa0223080:three_prime_UTR 40.0%
CCATTTCCGAGATTGGAATT+TGG + chr2_1:72560588-72560607 None:intergenic 40.0%
CCAAATTCCAATCTCGGAAA+TGG - chr2_1:72560585-72560604 Msa0223080:three_prime_UTR 40.0%
! AAATTGAAGACCAGCTCTGA+TGG + chr2_1:72560686-72560705 None:intergenic 40.0%
AGCGAGATATTCAAGAACAG+CGG + chr2_1:72560788-72560807 None:intergenic 40.0%
! GTTTAGGTTCTTGAATTGGC+TGG - chr2_1:72560901-72560920 Msa0223080:CDS 40.0%
TGTGAGAAATGATGAAGAGC+TGG - chr2_1:72560981-72561000 Msa0223080:CDS 40.0%
GTGAGAAATGATGAAGAGCT+GGG - chr2_1:72560982-72561001 Msa0223080:CDS 40.0%
GTCTTCTTAGGCAAAAGAAC+AGG + chr2_1:72561063-72561082 None:intergenic 40.0%
GTAGACCTTTCAGTCTTCTT+AGG + chr2_1:72561075-72561094 None:intergenic 40.0%
AAGGTCTACTAATGCTAGCA+AGG - chr2_1:72561086-72561105 Msa0223080:CDS 40.0%
CTCCAAAGAAGGCTTAGATT+AGG - chr2_1:72561142-72561161 Msa0223080:intron 40.0%
!! GTTGGTGTTTTGTAACTGGA+AGG - chr2_1:72561210-72561229 Msa0223080:intron 40.0%
AGGGTTCCAAATTCCAATCT+CGG - chr2_1:72560579-72560598 Msa0223080:three_prime_UTR 40.0%
CCATTTCCGAGATTGGAATT+TGG + chr2_1:72560588-72560607 None:intergenic 40.0%
CCAAATTCCAATCTCGGAAA+TGG - chr2_1:72560585-72560604 Msa0223080:three_prime_UTR 40.0%
! AAATTGAAGACCAGCTCTGA+TGG + chr2_1:72560686-72560705 None:intergenic 40.0%
AGCGAGATATTCAAGAACAG+CGG + chr2_1:72560788-72560807 None:intergenic 40.0%
! GTTTAGGTTCTTGAATTGGC+TGG - chr2_1:72560901-72560920 Msa0223080:CDS 40.0%
TGTGAGAAATGATGAAGAGC+TGG - chr2_1:72560981-72561000 Msa0223080:CDS 40.0%
GTGAGAAATGATGAAGAGCT+GGG - chr2_1:72560982-72561001 Msa0223080:CDS 40.0%
GTCTTCTTAGGCAAAAGAAC+AGG + chr2_1:72561063-72561082 None:intergenic 40.0%
GTAGACCTTTCAGTCTTCTT+AGG + chr2_1:72561075-72561094 None:intergenic 40.0%
AAGGTCTACTAATGCTAGCA+AGG - chr2_1:72561086-72561105 Msa0223080:CDS 40.0%
CTCCAAAGAAGGCTTAGATT+AGG - chr2_1:72561142-72561161 Msa0223080:intron 40.0%
!! GTTGGTGTTTTGTAACTGGA+AGG - chr2_1:72561210-72561229 Msa0223080:intron 40.0%
!! GCTGGTCTTCAATTTCCAGT+TGG - chr2_1:72560691-72560710 Msa0223080:three_prime_UTR 45.0%
ATCGGCCGTTACTTGAAGAA+AGG - chr2_1:72560718-72560737 Msa0223080:three_prime_UTR 45.0%
TCTTGAATATCTCGCTGCTG+AGG - chr2_1:72560792-72560811 Msa0223080:three_prime_UTR 45.0%
AATTCCAAGGCACGTGTTGT+TGG - chr2_1:72560957-72560976 Msa0223080:CDS 45.0%
GAGCTGGGAAAATTGTTAGC+TGG - chr2_1:72560997-72561016 Msa0223080:CDS 45.0%
GCTGGTGTAACAATTGCACA+TGG - chr2_1:72561015-72561034 Msa0223080:CDS 45.0%
GGTGTAACAATTGCACATGG+TGG - chr2_1:72561018-72561037 Msa0223080:CDS 45.0%
ACCAAAGTCTCCTAAGCCTA+AGG - chr2_1:72561110-72561129 Msa0223080:intron 45.0%
TTTGGAGACTTTCCAGCCTT+AGG + chr2_1:72561129-72561148 None:intergenic 45.0%
!! GCTGGTCTTCAATTTCCAGT+TGG - chr2_1:72560691-72560710 Msa0223080:three_prime_UTR 45.0%
ATCGGCCGTTACTTGAAGAA+AGG - chr2_1:72560718-72560737 Msa0223080:three_prime_UTR 45.0%
TCTTGAATATCTCGCTGCTG+AGG - chr2_1:72560792-72560811 Msa0223080:three_prime_UTR 45.0%
AATTCCAAGGCACGTGTTGT+TGG - chr2_1:72560957-72560976 Msa0223080:CDS 45.0%
GAGCTGGGAAAATTGTTAGC+TGG - chr2_1:72560997-72561016 Msa0223080:CDS 45.0%
GCTGGTGTAACAATTGCACA+TGG - chr2_1:72561015-72561034 Msa0223080:CDS 45.0%
GGTGTAACAATTGCACATGG+TGG - chr2_1:72561018-72561037 Msa0223080:CDS 45.0%
ACCAAAGTCTCCTAAGCCTA+AGG - chr2_1:72561110-72561129 Msa0223080:intron 45.0%
TTTGGAGACTTTCCAGCCTT+AGG + chr2_1:72561129-72561148 None:intergenic 45.0%
!! TAAACATAAAAATAAAATTA+GGG + chr2_1:72560886-72560905 None:intergenic 5.0%
!! TAAACATAAAAATAAAATTA+GGG + chr2_1:72560886-72560905 None:intergenic 5.0%
CTTGCGTCCATTTCCGAGAT+TGG + chr2_1:72560595-72560614 None:intergenic 50.0%
GCAAGCACCAAGACGAAGAA+AGG - chr2_1:72560610-72560629 Msa0223080:three_prime_UTR 50.0%
ACCAAGACGAAGAAAGGAGC+TGG - chr2_1:72560616-72560635 Msa0223080:three_prime_UTR 50.0%
ACCAGCTCCTTTCTTCGTCT+TGG + chr2_1:72560620-72560639 None:intergenic 50.0%
AAGACGAAGAAAGGAGCTGG+TGG - chr2_1:72560619-72560638 Msa0223080:three_prime_UTR 50.0%
AAAGGAGCTGGTGGAAGGAA+AGG - chr2_1:72560628-72560647 Msa0223080:three_prime_UTR 50.0%
CTGGTCACAGACTTCTTCCT+TGG + chr2_1:72560661-72560680 None:intergenic 50.0%
! AAGACCAGCTCTGATGGATC+TGG + chr2_1:72560680-72560699 None:intergenic 50.0%
! TAACGGCCGATTCTTCCAAC+TGG + chr2_1:72560709-72560728 None:intergenic 50.0%
GGAAGATACGCTCAACGTGT+TGG - chr2_1:72560739-72560758 Msa0223080:three_prime_UTR 50.0%
! TACGCTCAACGTGTTGGTAC+TGG - chr2_1:72560745-72560764 Msa0223080:three_prime_UTR 50.0%
GATATTCAAGAACAGCGGCG+AGG + chr2_1:72560783-72560802 None:intergenic 50.0%
GCCTTAGGCTTAGGAGACTT+TGG + chr2_1:72561114-72561133 None:intergenic 50.0%
AAGTCTCCTAAGCCTAAGGC+TGG - chr2_1:72561114-72561133 Msa0223080:intron 50.0%
GACTTTCCAGCCTTAGGCTT+AGG + chr2_1:72561123-72561142 None:intergenic 50.0%
GGCTGGAAAGTCTCCAAAGA+AGG - chr2_1:72561131-72561150 Msa0223080:intron 50.0%
CTTGCGTCCATTTCCGAGAT+TGG + chr2_1:72560595-72560614 None:intergenic 50.0%
GCAAGCACCAAGACGAAGAA+AGG - chr2_1:72560610-72560629 Msa0223080:three_prime_UTR 50.0%
ACCAAGACGAAGAAAGGAGC+TGG - chr2_1:72560616-72560635 Msa0223080:three_prime_UTR 50.0%
ACCAGCTCCTTTCTTCGTCT+TGG + chr2_1:72560620-72560639 None:intergenic 50.0%
AAGACGAAGAAAGGAGCTGG+TGG - chr2_1:72560619-72560638 Msa0223080:three_prime_UTR 50.0%
AAAGGAGCTGGTGGAAGGAA+AGG - chr2_1:72560628-72560647 Msa0223080:three_prime_UTR 50.0%
CTGGTCACAGACTTCTTCCT+TGG + chr2_1:72560661-72560680 None:intergenic 50.0%
! AAGACCAGCTCTGATGGATC+TGG + chr2_1:72560680-72560699 None:intergenic 50.0%
! TAACGGCCGATTCTTCCAAC+TGG + chr2_1:72560709-72560728 None:intergenic 50.0%
GGAAGATACGCTCAACGTGT+TGG - chr2_1:72560739-72560758 Msa0223080:three_prime_UTR 50.0%
! TACGCTCAACGTGTTGGTAC+TGG - chr2_1:72560745-72560764 Msa0223080:three_prime_UTR 50.0%
GATATTCAAGAACAGCGGCG+AGG + chr2_1:72560783-72560802 None:intergenic 50.0%
GCCTTAGGCTTAGGAGACTT+TGG + chr2_1:72561114-72561133 None:intergenic 50.0%
AAGTCTCCTAAGCCTAAGGC+TGG - chr2_1:72561114-72561133 Msa0223080:intron 50.0%
GACTTTCCAGCCTTAGGCTT+AGG + chr2_1:72561123-72561142 None:intergenic 50.0%
GGCTGGAAAGTCTCCAAAGA+AGG - chr2_1:72561131-72561150 Msa0223080:intron 50.0%
CGAAGAAAGGAGCTGGTGGA+AGG - chr2_1:72560623-72560642 Msa0223080:three_prime_UTR 55.0%
GAAGGAAAGGTGGAGGACCA+AGG - chr2_1:72560641-72560660 Msa0223080:three_prime_UTR 55.0%
GTGACCAGATCCATCAGAGC+TGG - chr2_1:72560673-72560692 Msa0223080:three_prime_UTR 55.0%
AGAACAGCGGCGAGGTAAAC+AGG + chr2_1:72560775-72560794 None:intergenic 55.0%
ACAGCCAACAACACGTGCCT+TGG + chr2_1:72560964-72560983 None:intergenic 55.0%
CGAAGAAAGGAGCTGGTGGA+AGG - chr2_1:72560623-72560642 Msa0223080:three_prime_UTR 55.0%
GAAGGAAAGGTGGAGGACCA+AGG - chr2_1:72560641-72560660 Msa0223080:three_prime_UTR 55.0%
GTGACCAGATCCATCAGAGC+TGG - chr2_1:72560673-72560692 Msa0223080:three_prime_UTR 55.0%
AGAACAGCGGCGAGGTAAAC+AGG + chr2_1:72560775-72560794 None:intergenic 55.0%
ACAGCCAACAACACGTGCCT+TGG + chr2_1:72560964-72560983 None:intergenic 55.0%
GGAGCTGGTGGAAGGAAAGG+TGG - chr2_1:72560631-72560650 Msa0223080:three_prime_UTR 60.0%
GCTGGTGGAAGGAAAGGTGG+AGG - chr2_1:72560634-72560653 Msa0223080:three_prime_UTR 60.0%
GGAGCTGGTGGAAGGAAAGG+TGG - chr2_1:72560631-72560650 Msa0223080:three_prime_UTR 60.0%
GCTGGTGGAAGGAAAGGTGG+AGG - chr2_1:72560634-72560653 Msa0223080:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 72560515 72561517 72560515 ID=Msa0223080;Name=Msa0223080
chr2_1 mRNA 72560515 72561517 72560515 ID=Msa0223080-mRNA-1;Parent=Msa0223080;Name=Msa0223080-mRNA-1;_AED=0.01;_eAED=0.01;_QI=89|1|1|1|1|1|2|359|153
chr2_1 exon 72560515 72561125 72560515 ID=Msa0223080-mRNA-1:exon:20998;Parent=Msa0223080-mRNA-1
chr2_1 exon 72561219 72561517 72561219 ID=Msa0223080-mRNA-1:exon:20997;Parent=Msa0223080-mRNA-1
chr2_1 five_prime_UTR 72561429 72561517 72561429 ID=Msa0223080-mRNA-1:five_prime_utr;Parent=Msa0223080-mRNA-1
chr2_1 CDS 72561219 72561428 72561219 ID=Msa0223080-mRNA-1:cds;Parent=Msa0223080-mRNA-1
chr2_1 CDS 72560874 72561125 72560874 ID=Msa0223080-mRNA-1:cds;Parent=Msa0223080-mRNA-1
chr2_1 three_prime_UTR 72560515 72560873 72560515 ID=Msa0223080-mRNA-1:three_prime_utr;Parent=Msa0223080-mRNA-1
Gene Sequence

>Msa0223080

ATGGACGCAAGCACCAAGACGAAGAAAGGAGCTGGTGGAAGGAAAGGTGGAGGACCAAGGAAGAAGTCTGTGACCAGATCCATCAGAGCTGGTCTTCAATTTCCAGTTGGAAGAATCGGCCGTTACTTGAAGAAAGGAAGATACGCTCAACGTGTTGGTACTGGTGCTCCTGTTTACCTCGCCGCTGTTCTTGAATATCTCGCTGCTGAGGTTCTTGAATTGGCTGGAAATGCTGCACGTGATAACAAGAAGAATAGGATAATTCCAAGGCACGTGTTGTTGGCTGTGAGAAATGATGAAGAGCTGGGAAAATTGTTAGCTGGTGTAACAATTGCACATGGTGGTGTTCTTCCAAACATTAACCCTGTTCTTTTGCCTAAGAAGACTGAAAGGTCTACTAATGCTAGCAAGGAACCAAAGTCTCCTAAGCCTAAGGCTGGAAAGTCTCCAAAGAAGGCTTAG

Protein sequence

>Msa0223080

MDASTKTKKGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTERSTNASKEPKSPKPKAGKSPKKA*