AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1446820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1446820 MtrunA17_Chr2g0327931 98.039 153 3 0 1 153 1 153 1.24e-103 293
Msa1446820 MtrunA17_Chr4g0031041 94.074 135 5 2 19 153 14 145 1.18e-83 242
Msa1446820 MtrunA17_Chr4g0035621 92.208 154 9 2 1 153 1 152 1.09e-81 237
Msa1446820 MtrunA17_Chr2g0327951 88.889 153 12 2 1 153 38 185 7.25e-81 236
Msa1446820 MtrunA17_Chr4g0031651 91.558 154 6 3 1 153 1 148 6.80e-79 230
Msa1446820 MtrunA17_Chr4g0031001 91.558 154 6 3 1 153 1 148 2.56e-78 229
Msa1446820 MtrunA17_Chr4g0032301 90.260 154 8 3 1 153 1 148 7.92e-77 225
Msa1446820 MtrunA17_Chr8g0379311 97.727 132 2 1 1 131 1 132 3.96e-74 218
Msa1446820 MtrunA17_Chr7g0272611 81.203 133 21 2 9 138 13 144 2.81e-71 211
Msa1446820 MtrunA17_Chr7g0268831 75.000 128 26 3 3 129 6 128 4.94e-60 182
Msa1446820 MtrunA17_Chr7g0259151 71.875 128 33 1 2 129 4 128 1.32e-59 181
Msa1446820 MtrunA17_Chr7g0273351 73.438 128 29 2 3 129 2 125 2.27e-59 180
Msa1446820 MtrunA17_Chr2g0319191 74.790 119 30 0 10 128 3 121 1.27e-58 178
Msa1446820 MtrunA17_Chr7g0273331 73.228 127 31 1 3 129 58 181 1.33e-58 180
Msa1446820 MtrunA17_Chr2g0319181 73.950 119 31 0 10 128 3 121 1.45e-57 176
Msa1446820 MtrunA17_Chr6g0449661 64.754 122 29 3 23 138 85 198 3.59e-46 149
Msa1446820 MtrunA17_Chr4g0031031 76.147 109 17 2 44 152 10 109 8.13e-46 145
Msa1446820 MtrunA17_Chr3g0119971 64.463 121 29 3 24 138 81 193 1.04e-45 147
Msa1446820 MtrunA17_Chr7g0273341 71.296 108 20 2 22 129 57 153 2.51e-45 145
Msa1446820 MtrunA17_Chr1g0148961 59.821 112 43 2 20 130 23 133 7.11e-36 120
Msa1446820 MtrunA17_Chr1g0148951 59.821 112 43 2 20 130 23 133 7.11e-36 120
Msa1446820 MtrunA17_Chr1g0211651 59.633 109 42 2 20 127 20 127 6.27e-35 118
Msa1446820 MtrunA17_Chr1g0184901 61.538 104 38 2 25 127 28 130 2.94e-34 116
Msa1446820 MtrunA17_Chr1g0183701 61.644 73 28 0 66 138 30 102 9.55e-27 96.7
Msa1446820 MtrunA17_Chr4g0024701 49.524 105 33 2 23 127 26 110 5.06e-22 85.1
Msa1446820 MtrunA17_Chr4g0000531 60.000 55 22 0 84 138 5 59 8.33e-16 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1446820 AT5G02560.1 80.519 154 28 2 1 153 1 153 3.36e-78 229
Msa1446820 AT5G02560.2 69.663 178 28 3 1 153 1 177 2.38e-73 218
Msa1446820 AT5G27670.1 75.000 152 32 2 2 153 5 150 3.60e-73 216
Msa1446820 AT5G59870.1 73.377 154 36 2 1 153 1 150 1.42e-72 214
Msa1446820 AT1G51060.1 76.667 120 28 0 10 129 3 122 7.36e-61 184
Msa1446820 AT4G27230.2 73.984 123 32 0 10 132 3 125 1.39e-59 181
Msa1446820 AT4G27230.1 73.984 123 32 0 10 132 3 125 1.39e-59 181
Msa1446820 AT3G20670.1 71.318 129 37 0 10 138 3 131 3.01e-59 180
Msa1446820 AT5G54640.1 74.790 119 30 0 10 128 3 121 3.25e-58 177
Msa1446820 AT1G08880.1 72.222 126 32 1 7 129 3 128 3.71e-58 178
Msa1446820 AT1G54690.1 73.171 123 30 1 10 129 6 128 9.00e-58 177
Msa1446820 AT2G38810.1 59.821 112 43 2 20 130 25 135 2.08e-36 122
Msa1446820 AT2G38810.4 59.821 112 43 2 20 130 25 135 2.08e-36 122
Msa1446820 AT2G38810.3 59.821 112 43 2 20 130 25 135 2.08e-36 122
Msa1446820 AT2G38810.2 59.821 112 43 2 20 130 25 135 2.08e-36 122
Msa1446820 AT1G52740.1 61.905 105 38 2 24 127 27 130 1.35e-34 118
Msa1446820 AT3G54560.1 59.259 108 42 2 24 130 29 135 2.47e-34 117
Msa1446820 AT3G54560.2 59.259 108 42 2 24 130 29 135 2.47e-34 117
Msa1446820 AT4G13570.1 47.826 92 46 2 31 121 28 118 7.97e-20 79.7
Msa1446820 AT4G13570.2 47.253 91 46 2 32 121 35 124 1.74e-19 79.0

Find 61 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACTCCATAGACAATTTA+AGG 0.186735 tig0031500:-20291 None:intergenic
CCATTTCCGAGATTGGAATT+TGG 0.219353 tig0031500:-19559 None:intergenic
AACCTAATCTAAGCCTTCTT+TGG 0.260442 tig0031500:-20118 None:intergenic
GCGTTTGAAATGATGTAATT+TGG 0.268471 tig0031500:+20213 Msa1446820:three_prime_UTR
GTAGACCTTTCAGTCTTCTT+AGG 0.271890 tig0031500:-20046 None:intergenic
TATTTGCCTTAAATTGTCTA+TGG 0.279063 tig0031500:+20285 Msa1446820:three_prime_UTR
CTTGCGTCCATTTCCGAGAT+TGG 0.309548 tig0031500:-19566 None:intergenic
GGCTTAGATTAGGTTTCTTA+TGG 0.319196 tig0031500:+20126 Msa1446820:exon
GTCTTCTTAGGCAAAAGAAC+AGG 0.334824 tig0031500:-20034 None:intergenic
ACCAGCTCCTTTCTTCGTCT+TGG 0.348361 tig0031500:-19591 None:intergenic
TTATGTTTAGGTTCTTGAAT+TGG 0.357612 tig0031500:+19871 Msa1446820:intron
AGAACAGCGGCGAGGTAAAC+AGG 0.381456 tig0031500:-19746 None:intergenic
AAAAGAACAGGGTTAATGTT+TGG 0.382061 tig0031500:-20022 None:intergenic
CAATTTCCAGTTGGAAGAAT+CGG 0.382886 tig0031500:+19674 Msa1446820:CDS
TGTGTGTATAATTGCGCTTT+AGG 0.395647 tig0031500:+20162 Msa1446820:three_prime_UTR
GCCTTAGGCTTAGGAGACTT+TGG 0.397268 tig0031500:-20085 None:intergenic
CTCCAAAGAAGGCTTAGATT+AGG 0.399064 tig0031500:+20116 Msa1446820:exon
GACTTTCCAGCCTTAGGCTT+AGG 0.400283 tig0031500:-20094 None:intergenic
CTGGTCACAGACTTCTTCCT+TGG 0.400754 tig0031500:-19632 None:intergenic
TTTGGAGACTTTCCAGCCTT+AGG 0.406671 tig0031500:-20100 None:intergenic
CCAAATTCCAATCTCGGAAA+TGG 0.413559 tig0031500:+19559 Msa1446820:exon
GAATTCGGTGTGAAATGAAA+TGG 0.427452 tig0031500:-19516 None:intergenic
TGATGTAATTTGGAAGTCTC+TGG 0.433364 tig0031500:+20223 Msa1446820:three_prime_UTR
GTTTAGGTTCTTGAATTGGC+TGG 0.434556 tig0031500:+19875 Msa1446820:intron
TAACGGCCGATTCTTCCAAC+TGG 0.469071 tig0031500:-19680 None:intergenic
AGGGTTCCAAATTCCAATCT+CGG 0.476240 tig0031500:+19553 Msa1446820:five_prime_UTR
AAAGGAGCTGGTGGAAGGAA+AGG 0.477487 tig0031500:+19602 Msa1446820:CDS
AATTCCAAGGCACGTGTTGT+TGG 0.477559 tig0031500:+19931 Msa1446820:CDS
GGAGCTGGTGGAAGGAAAGG+TGG 0.481033 tig0031500:+19605 Msa1446820:CDS
GCAAGCACCAAGACGAAGAA+AGG 0.482883 tig0031500:+19584 Msa1446820:CDS
ACAGCCAACAACACGTGCCT+TGG 0.485674 tig0031500:-19935 None:intergenic
TTGTAACATCTAATCGTGTA+AGG 0.486152 tig0031500:-20395 None:intergenic
AAGACCAGCTCTGATGGATC+TGG 0.491289 tig0031500:-19651 None:intergenic
ATCTTCCTTTCTTCAAGTAA+CGG 0.498085 tig0031500:-19697 None:intergenic
AAATTGAAGACCAGCTCTGA+TGG 0.498711 tig0031500:-19657 None:intergenic
TACGCTCAACGTGTTGGTAC+TGG 0.502701 tig0031500:+19719 Msa1446820:CDS
TGTATAATTGCGCTTTAGGT+TGG 0.511963 tig0031500:+20166 Msa1446820:three_prime_UTR
TGTGAGAAATGATGAAGAGC+TGG 0.520971 tig0031500:+19955 Msa1446820:CDS
CACGTGATAACAAGAAGAAT+AGG 0.529318 tig0031500:+19906 Msa1446820:CDS
GGCTGGAAAGTCTCCAAAGA+AGG 0.542007 tig0031500:+20105 Msa1446820:CDS
AAGTCTCCTAAGCCTAAGGC+TGG 0.542736 tig0031500:+20088 Msa1446820:CDS
ATCGGCCGTTACTTGAAGAA+AGG 0.544708 tig0031500:+19692 Msa1446820:CDS
ACCAAAGTCTCCTAAGCCTA+AGG 0.550123 tig0031500:+20084 Msa1446820:CDS
GTGACCAGATCCATCAGAGC+TGG 0.553138 tig0031500:+19647 Msa1446820:CDS
CGAAGAAAGGAGCTGGTGGA+AGG 0.557443 tig0031500:+19597 Msa1446820:CDS
AAGGTCTACTAATGCTAGCA+AGG 0.572544 tig0031500:+20060 Msa1446820:CDS
ACCAAGACGAAGAAAGGAGC+TGG 0.579581 tig0031500:+19590 Msa1446820:CDS
GAGCTGGGAAAATTGTTAGC+TGG 0.589509 tig0031500:+19971 Msa1446820:CDS
GGAAGATACGCTCAACGTGT+TGG 0.597552 tig0031500:+19713 Msa1446820:CDS
GCTGGTCTTCAATTTCCAGT+TGG 0.598252 tig0031500:+19665 Msa1446820:CDS
GAAGGAAAGGTGGAGGACCA+AGG 0.610388 tig0031500:+19615 Msa1446820:CDS
TCTTCTTAGGCAAAAGAACA+GGG 0.618533 tig0031500:-20033 None:intergenic
GCTGGTGGAAGGAAAGGTGG+AGG 0.624747 tig0031500:+19608 Msa1446820:CDS
AGAAGAATAGGATAATTCCA+AGG 0.643694 tig0031500:+19918 Msa1446820:CDS
GTGAGAAATGATGAAGAGCT+GGG 0.654622 tig0031500:+19956 Msa1446820:CDS
AAGACGAAGAAAGGAGCTGG+TGG 0.662071 tig0031500:+19593 Msa1446820:CDS
TCTTGAATATCTCGCTGCTG+AGG 0.665898 tig0031500:+19766 Msa1446820:CDS
AGCGAGATATTCAAGAACAG+CGG 0.706002 tig0031500:-19759 None:intergenic
GATATTCAAGAACAGCGGCG+AGG 0.723455 tig0031500:-19754 None:intergenic
GCTGGTGTAACAATTGCACA+TGG 0.750058 tig0031500:+19989 Msa1446820:CDS
GGTGTAACAATTGCACATGG+TGG 0.783361 tig0031500:+19992 Msa1446820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAAACATAAAAATAAAATT+AGG - tig0031500:19861-19880 None:intergenic 10.0%
!!! CTAATTTTATTTTTATGTTT+AGG + tig0031500:19859-19878 Msa1446820:intron 10.0%
!! CTAAACATAAAAATAAAATT+AGG - tig0031500:19861-19880 None:intergenic 10.0%
!!! CTAATTTTATTTTTATGTTT+AGG + tig0031500:19859-19878 Msa1446820:intron 10.0%
!!! TAACTTTTTTGCTACGAATT+CGG - tig0031500:19534-19553 None:intergenic 25.0%
! AATTCGTAGCAAAAAAGTTA+GGG + tig0031500:19534-19553 Msa1446820:five_prime_UTR 25.0%
! GTTACAAAATTGGAAATCAA+AGG - tig0031500:19818-19837 None:intergenic 25.0%
! CAAAATTAGGGTTACAAAAT+TGG - tig0031500:19828-19847 None:intergenic 25.0%
! GGGTTACAAATTCAAAATTA+GGG - tig0031500:19840-19859 None:intergenic 25.0%
! AGGGTTACAAATTCAAAATT+AGG - tig0031500:19841-19860 None:intergenic 25.0%
!! TTATGTTTAGGTTCTTGAAT+TGG + tig0031500:19871-19890 Msa1446820:intron 25.0%
! TATTTGCCTTAAATTGTCTA+TGG + tig0031500:20285-20304 Msa1446820:three_prime_UTR 25.0%
!!! TAACTTTTTTGCTACGAATT+CGG - tig0031500:19534-19553 None:intergenic 25.0%
! AATTCGTAGCAAAAAAGTTA+GGG + tig0031500:19534-19553 Msa1446820:five_prime_UTR 25.0%
! GTTACAAAATTGGAAATCAA+AGG - tig0031500:19818-19837 None:intergenic 25.0%
! CAAAATTAGGGTTACAAAAT+TGG - tig0031500:19828-19847 None:intergenic 25.0%
! GGGTTACAAATTCAAAATTA+GGG - tig0031500:19840-19859 None:intergenic 25.0%
! AGGGTTACAAATTCAAAATT+AGG - tig0031500:19841-19860 None:intergenic 25.0%
!! TTATGTTTAGGTTCTTGAAT+TGG + tig0031500:19871-19890 Msa1446820:intron 25.0%
! TATTTGCCTTAAATTGTCTA+TGG + tig0031500:20285-20304 Msa1446820:three_prime_UTR 25.0%
! ATGAAATGGAAGATTTTGAG+TGG - tig0031500:19505-19524 None:intergenic 30.0%
GAATTCGTAGCAAAAAAGTT+AGG + tig0031500:19533-19552 Msa1446820:five_prime_UTR 30.0%
ATCTTCCTTTCTTCAAGTAA+CGG - tig0031500:19700-19719 None:intergenic 30.0%
AATCAAAGGTCATAAGAAAG+AGG - tig0031500:19804-19823 None:intergenic 30.0%
AGAAGAATAGGATAATTCCA+AGG + tig0031500:19918-19937 Msa1446820:CDS 30.0%
AAAAGAACAGGGTTAATGTT+TGG - tig0031500:20025-20044 None:intergenic 30.0%
! GCGTTTGAAATGATGTAATT+TGG + tig0031500:20213-20232 Msa1446820:three_prime_UTR 30.0%
CAAACTCCATAGACAATTTA+AGG - tig0031500:20294-20313 None:intergenic 30.0%
TTGTAACATCTAATCGTGTA+AGG - tig0031500:20398-20417 None:intergenic 30.0%
! ATGAAATGGAAGATTTTGAG+TGG - tig0031500:19505-19524 None:intergenic 30.0%
GAATTCGTAGCAAAAAAGTT+AGG + tig0031500:19533-19552 Msa1446820:five_prime_UTR 30.0%
ATCTTCCTTTCTTCAAGTAA+CGG - tig0031500:19700-19719 None:intergenic 30.0%
AATCAAAGGTCATAAGAAAG+AGG - tig0031500:19804-19823 None:intergenic 30.0%
AGAAGAATAGGATAATTCCA+AGG + tig0031500:19918-19937 Msa1446820:CDS 30.0%
AAAAGAACAGGGTTAATGTT+TGG - tig0031500:20025-20044 None:intergenic 30.0%
! GCGTTTGAAATGATGTAATT+TGG + tig0031500:20213-20232 Msa1446820:three_prime_UTR 30.0%
CAAACTCCATAGACAATTTA+AGG - tig0031500:20294-20313 None:intergenic 30.0%
TTGTAACATCTAATCGTGTA+AGG - tig0031500:20398-20417 None:intergenic 30.0%
!! GAATTCGGTGTGAAATGAAA+TGG - tig0031500:19519-19538 None:intergenic 35.0%
CAATTTCCAGTTGGAAGAAT+CGG + tig0031500:19674-19693 Msa1446820:CDS 35.0%
CACGTGATAACAAGAAGAAT+AGG + tig0031500:19906-19925 Msa1446820:CDS 35.0%
TCTTCTTAGGCAAAAGAACA+GGG - tig0031500:20036-20055 None:intergenic 35.0%
! TTTTGCCTAAGAAGACTGAA+AGG + tig0031500:20041-20060 Msa1446820:CDS 35.0%
AACCTAATCTAAGCCTTCTT+TGG - tig0031500:20121-20140 None:intergenic 35.0%
GGCTTAGATTAGGTTTCTTA+TGG + tig0031500:20126-20145 Msa1446820:exon 35.0%
TGTGTGTATAATTGCGCTTT+AGG + tig0031500:20162-20181 Msa1446820:three_prime_UTR 35.0%
! TGTATAATTGCGCTTTAGGT+TGG + tig0031500:20166-20185 Msa1446820:three_prime_UTR 35.0%
!!! TTAGGTTGGTGTTTTGTAAC+TGG + tig0031500:20180-20199 Msa1446820:three_prime_UTR 35.0%
TGATGTAATTTGGAAGTCTC+TGG + tig0031500:20223-20242 Msa1446820:three_prime_UTR 35.0%
!! GAATTCGGTGTGAAATGAAA+TGG - tig0031500:19519-19538 None:intergenic 35.0%
CAATTTCCAGTTGGAAGAAT+CGG + tig0031500:19674-19693 Msa1446820:CDS 35.0%
CACGTGATAACAAGAAGAAT+AGG + tig0031500:19906-19925 Msa1446820:CDS 35.0%
TCTTCTTAGGCAAAAGAACA+GGG - tig0031500:20036-20055 None:intergenic 35.0%
! TTTTGCCTAAGAAGACTGAA+AGG + tig0031500:20041-20060 Msa1446820:CDS 35.0%
AACCTAATCTAAGCCTTCTT+TGG - tig0031500:20121-20140 None:intergenic 35.0%
GGCTTAGATTAGGTTTCTTA+TGG + tig0031500:20126-20145 Msa1446820:exon 35.0%
TGTGTGTATAATTGCGCTTT+AGG + tig0031500:20162-20181 Msa1446820:three_prime_UTR 35.0%
! TGTATAATTGCGCTTTAGGT+TGG + tig0031500:20166-20185 Msa1446820:three_prime_UTR 35.0%
!!! TTAGGTTGGTGTTTTGTAAC+TGG + tig0031500:20180-20199 Msa1446820:three_prime_UTR 35.0%
TGATGTAATTTGGAAGTCTC+TGG + tig0031500:20223-20242 Msa1446820:three_prime_UTR 35.0%
AGGGTTCCAAATTCCAATCT+CGG + tig0031500:19553-19572 Msa1446820:five_prime_UTR 40.0%
CCATTTCCGAGATTGGAATT+TGG - tig0031500:19562-19581 None:intergenic 40.0%
CCAAATTCCAATCTCGGAAA+TGG + tig0031500:19559-19578 Msa1446820:exon 40.0%
! AAATTGAAGACCAGCTCTGA+TGG - tig0031500:19660-19679 None:intergenic 40.0%
AGCGAGATATTCAAGAACAG+CGG - tig0031500:19762-19781 None:intergenic 40.0%
! GTTTAGGTTCTTGAATTGGC+TGG + tig0031500:19875-19894 Msa1446820:intron 40.0%
TGTGAGAAATGATGAAGAGC+TGG + tig0031500:19955-19974 Msa1446820:CDS 40.0%
GTGAGAAATGATGAAGAGCT+GGG + tig0031500:19956-19975 Msa1446820:CDS 40.0%
GTCTTCTTAGGCAAAAGAAC+AGG - tig0031500:20037-20056 None:intergenic 40.0%
GTAGACCTTTCAGTCTTCTT+AGG - tig0031500:20049-20068 None:intergenic 40.0%
AAGGTCTACTAATGCTAGCA+AGG + tig0031500:20060-20079 Msa1446820:CDS 40.0%
CTCCAAAGAAGGCTTAGATT+AGG + tig0031500:20116-20135 Msa1446820:exon 40.0%
!! GTTGGTGTTTTGTAACTGGA+AGG + tig0031500:20184-20203 Msa1446820:three_prime_UTR 40.0%
AGGGTTCCAAATTCCAATCT+CGG + tig0031500:19553-19572 Msa1446820:five_prime_UTR 40.0%
CCATTTCCGAGATTGGAATT+TGG - tig0031500:19562-19581 None:intergenic 40.0%
CCAAATTCCAATCTCGGAAA+TGG + tig0031500:19559-19578 Msa1446820:exon 40.0%
! AAATTGAAGACCAGCTCTGA+TGG - tig0031500:19660-19679 None:intergenic 40.0%
AGCGAGATATTCAAGAACAG+CGG - tig0031500:19762-19781 None:intergenic 40.0%
! GTTTAGGTTCTTGAATTGGC+TGG + tig0031500:19875-19894 Msa1446820:intron 40.0%
TGTGAGAAATGATGAAGAGC+TGG + tig0031500:19955-19974 Msa1446820:CDS 40.0%
GTGAGAAATGATGAAGAGCT+GGG + tig0031500:19956-19975 Msa1446820:CDS 40.0%
GTCTTCTTAGGCAAAAGAAC+AGG - tig0031500:20037-20056 None:intergenic 40.0%
GTAGACCTTTCAGTCTTCTT+AGG - tig0031500:20049-20068 None:intergenic 40.0%
AAGGTCTACTAATGCTAGCA+AGG + tig0031500:20060-20079 Msa1446820:CDS 40.0%
CTCCAAAGAAGGCTTAGATT+AGG + tig0031500:20116-20135 Msa1446820:exon 40.0%
!! GTTGGTGTTTTGTAACTGGA+AGG + tig0031500:20184-20203 Msa1446820:three_prime_UTR 40.0%
!! GCTGGTCTTCAATTTCCAGT+TGG + tig0031500:19665-19684 Msa1446820:CDS 45.0%
ATCGGCCGTTACTTGAAGAA+AGG + tig0031500:19692-19711 Msa1446820:CDS 45.0%
TCTTGAATATCTCGCTGCTG+AGG + tig0031500:19766-19785 Msa1446820:CDS 45.0%
AATTCCAAGGCACGTGTTGT+TGG + tig0031500:19931-19950 Msa1446820:CDS 45.0%
GAGCTGGGAAAATTGTTAGC+TGG + tig0031500:19971-19990 Msa1446820:CDS 45.0%
GCTGGTGTAACAATTGCACA+TGG + tig0031500:19989-20008 Msa1446820:CDS 45.0%
GGTGTAACAATTGCACATGG+TGG + tig0031500:19992-20011 Msa1446820:CDS 45.0%
ACCAAAGTCTCCTAAGCCTA+AGG + tig0031500:20084-20103 Msa1446820:CDS 45.0%
TTTGGAGACTTTCCAGCCTT+AGG - tig0031500:20103-20122 None:intergenic 45.0%
!! GCTGGTCTTCAATTTCCAGT+TGG + tig0031500:19665-19684 Msa1446820:CDS 45.0%
ATCGGCCGTTACTTGAAGAA+AGG + tig0031500:19692-19711 Msa1446820:CDS 45.0%
TCTTGAATATCTCGCTGCTG+AGG + tig0031500:19766-19785 Msa1446820:CDS 45.0%
AATTCCAAGGCACGTGTTGT+TGG + tig0031500:19931-19950 Msa1446820:CDS 45.0%
GAGCTGGGAAAATTGTTAGC+TGG + tig0031500:19971-19990 Msa1446820:CDS 45.0%
GCTGGTGTAACAATTGCACA+TGG + tig0031500:19989-20008 Msa1446820:CDS 45.0%
GGTGTAACAATTGCACATGG+TGG + tig0031500:19992-20011 Msa1446820:CDS 45.0%
ACCAAAGTCTCCTAAGCCTA+AGG + tig0031500:20084-20103 Msa1446820:CDS 45.0%
TTTGGAGACTTTCCAGCCTT+AGG - tig0031500:20103-20122 None:intergenic 45.0%
!! TAAACATAAAAATAAAATTA+GGG - tig0031500:19860-19879 None:intergenic 5.0%
!! TAAACATAAAAATAAAATTA+GGG - tig0031500:19860-19879 None:intergenic 5.0%
CTTGCGTCCATTTCCGAGAT+TGG - tig0031500:19569-19588 None:intergenic 50.0%
GCAAGCACCAAGACGAAGAA+AGG + tig0031500:19584-19603 Msa1446820:CDS 50.0%
ACCAAGACGAAGAAAGGAGC+TGG + tig0031500:19590-19609 Msa1446820:CDS 50.0%
ACCAGCTCCTTTCTTCGTCT+TGG - tig0031500:19594-19613 None:intergenic 50.0%
AAGACGAAGAAAGGAGCTGG+TGG + tig0031500:19593-19612 Msa1446820:CDS 50.0%
AAAGGAGCTGGTGGAAGGAA+AGG + tig0031500:19602-19621 Msa1446820:CDS 50.0%
CTGGTCACAGACTTCTTCCT+TGG - tig0031500:19635-19654 None:intergenic 50.0%
! AAGACCAGCTCTGATGGATC+TGG - tig0031500:19654-19673 None:intergenic 50.0%
! TAACGGCCGATTCTTCCAAC+TGG - tig0031500:19683-19702 None:intergenic 50.0%
GGAAGATACGCTCAACGTGT+TGG + tig0031500:19713-19732 Msa1446820:CDS 50.0%
! TACGCTCAACGTGTTGGTAC+TGG + tig0031500:19719-19738 Msa1446820:CDS 50.0%
GATATTCAAGAACAGCGGCG+AGG - tig0031500:19757-19776 None:intergenic 50.0%
GCCTTAGGCTTAGGAGACTT+TGG - tig0031500:20088-20107 None:intergenic 50.0%
AAGTCTCCTAAGCCTAAGGC+TGG + tig0031500:20088-20107 Msa1446820:CDS 50.0%
GACTTTCCAGCCTTAGGCTT+AGG - tig0031500:20097-20116 None:intergenic 50.0%
GGCTGGAAAGTCTCCAAAGA+AGG + tig0031500:20105-20124 Msa1446820:CDS 50.0%
CTTGCGTCCATTTCCGAGAT+TGG - tig0031500:19569-19588 None:intergenic 50.0%
GCAAGCACCAAGACGAAGAA+AGG + tig0031500:19584-19603 Msa1446820:CDS 50.0%
ACCAAGACGAAGAAAGGAGC+TGG + tig0031500:19590-19609 Msa1446820:CDS 50.0%
ACCAGCTCCTTTCTTCGTCT+TGG - tig0031500:19594-19613 None:intergenic 50.0%
AAGACGAAGAAAGGAGCTGG+TGG + tig0031500:19593-19612 Msa1446820:CDS 50.0%
AAAGGAGCTGGTGGAAGGAA+AGG + tig0031500:19602-19621 Msa1446820:CDS 50.0%
CTGGTCACAGACTTCTTCCT+TGG - tig0031500:19635-19654 None:intergenic 50.0%
! AAGACCAGCTCTGATGGATC+TGG - tig0031500:19654-19673 None:intergenic 50.0%
! TAACGGCCGATTCTTCCAAC+TGG - tig0031500:19683-19702 None:intergenic 50.0%
GGAAGATACGCTCAACGTGT+TGG + tig0031500:19713-19732 Msa1446820:CDS 50.0%
! TACGCTCAACGTGTTGGTAC+TGG + tig0031500:19719-19738 Msa1446820:CDS 50.0%
GATATTCAAGAACAGCGGCG+AGG - tig0031500:19757-19776 None:intergenic 50.0%
GCCTTAGGCTTAGGAGACTT+TGG - tig0031500:20088-20107 None:intergenic 50.0%
AAGTCTCCTAAGCCTAAGGC+TGG + tig0031500:20088-20107 Msa1446820:CDS 50.0%
GACTTTCCAGCCTTAGGCTT+AGG - tig0031500:20097-20116 None:intergenic 50.0%
GGCTGGAAAGTCTCCAAAGA+AGG + tig0031500:20105-20124 Msa1446820:CDS 50.0%
CGAAGAAAGGAGCTGGTGGA+AGG + tig0031500:19597-19616 Msa1446820:CDS 55.0%
GAAGGAAAGGTGGAGGACCA+AGG + tig0031500:19615-19634 Msa1446820:CDS 55.0%
GTGACCAGATCCATCAGAGC+TGG + tig0031500:19647-19666 Msa1446820:CDS 55.0%
AGAACAGCGGCGAGGTAAAC+AGG - tig0031500:19749-19768 None:intergenic 55.0%
ACAGCCAACAACACGTGCCT+TGG - tig0031500:19938-19957 None:intergenic 55.0%
CGAAGAAAGGAGCTGGTGGA+AGG + tig0031500:19597-19616 Msa1446820:CDS 55.0%
GAAGGAAAGGTGGAGGACCA+AGG + tig0031500:19615-19634 Msa1446820:CDS 55.0%
GTGACCAGATCCATCAGAGC+TGG + tig0031500:19647-19666 Msa1446820:CDS 55.0%
AGAACAGCGGCGAGGTAAAC+AGG - tig0031500:19749-19768 None:intergenic 55.0%
ACAGCCAACAACACGTGCCT+TGG - tig0031500:19938-19957 None:intergenic 55.0%
GGAGCTGGTGGAAGGAAAGG+TGG + tig0031500:19605-19624 Msa1446820:CDS 60.0%
GCTGGTGGAAGGAAAGGTGG+AGG + tig0031500:19608-19627 Msa1446820:CDS 60.0%
GGAGCTGGTGGAAGGAAAGG+TGG + tig0031500:19605-19624 Msa1446820:CDS 60.0%
GCTGGTGGAAGGAAAGGTGG+AGG + tig0031500:19608-19627 Msa1446820:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0031500 gene 19489 20481 19489 ID=Msa1446820;Name=Msa1446820
tig0031500 mRNA 19489 20481 19489 ID=Msa1446820-mRNA-1;Parent=Msa1446820;Name=Msa1446820-mRNA-1;_AED=0.01;_eAED=0.01;_QI=89|1|1|1|1|1|2|349|153
tig0031500 exon 19489 19787 19489 ID=Msa1446820-mRNA-1:exon:15572;Parent=Msa1446820-mRNA-1
tig0031500 exon 19881 20481 19881 ID=Msa1446820-mRNA-1:exon:15573;Parent=Msa1446820-mRNA-1
tig0031500 five_prime_UTR 19489 19577 19489 ID=Msa1446820-mRNA-1:five_prime_utr;Parent=Msa1446820-mRNA-1
tig0031500 CDS 19578 19787 19578 ID=Msa1446820-mRNA-1:cds;Parent=Msa1446820-mRNA-1
tig0031500 CDS 19881 20132 19881 ID=Msa1446820-mRNA-1:cds;Parent=Msa1446820-mRNA-1
tig0031500 three_prime_UTR 20133 20481 20133 ID=Msa1446820-mRNA-1:three_prime_utr;Parent=Msa1446820-mRNA-1
Gene Sequence

>Msa1446820

ATGGACGCAAGCACCAAGACGAAGAAAGGAGCTGGTGGAAGGAAAGGTGGAGGACCAAGGAAGAAGTCTGTGACCAGATCCATCAGAGCTGGTCTTCAATTTCCAGTTGGAAGAATCGGCCGTTACTTGAAGAAAGGAAGATACGCTCAACGTGTTGGTACTGGTGCTCCTGTTTACCTCGCCGCTGTTCTTGAATATCTCGCTGCTGAGGTTCTTGAATTGGCTGGAAATGCTGCACGTGATAACAAGAAGAATAGGATAATTCCAAGGCACGTGTTGTTGGCTGTGAGAAATGATGAAGAGCTGGGAAAATTGTTAGCTGGTGTAACAATTGCACATGGTGGTGTTCTTCCAAACATTAACCCTGTTCTTTTGCCTAAGAAGACTGAAAGGTCTACTAATGCTAGCAAGGAACCAAAGTCTCCTAAGCCTAAGGCTGGAAAGTCTCCAAAGAAGGCTTAG

Protein sequence

>Msa1446820

MDASTKTKKGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTERSTNASKEPKSPKPKAGKSPKKA*