AlfalfaGEDB | Msa0097940

M. sativa cultivar zhongmu-4 / Msa0097940

KEGG: -
GO: GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0034220 GO:0034755 GO:0042221 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071421 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771
PFAM: PF01988.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0097940	XP_003592125.1	96.396	222	2	2	1	221	1	217	5.16e-148	421

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0097940	sp\|Q9M2C0\|VITH4_ARATH	66.516	221	51	4	1	221	1	198	5.26e-100	291

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0097940	G7ID02	96.396	222	2	2	1	221	1	217	2.46e-148	421

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0050760	Msa0097940	0.805678	1.188600e-49	-8.615850e-47
Msa0097940	Msa0140910	0.807558	4.765761e-50	-8.615850e-47
Msa0097940	Msa0449760	0.828423	9.063076e-55	-8.615850e-47
Msa0097940	Msa0578970	0.801407	9.136064e-49	-8.615850e-47
Msa0097940	Msa0599580	0.831113	2.006847e-55	-8.615850e-47
Msa0097940	Msa0610590	0.804777	1.835330e-49	-8.615850e-47
Msa0097940	Msa0651190	0.812069	5.102963e-51	-8.615850e-47
Msa0097940	Msa0667890	0.804742	1.866867e-49	-8.615850e-47
Msa0097940	Msa0718470	0.801490	8.784368e-49	-8.615850e-47
Msa0097940	Msa0731710	0.821348	4.235278e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0097940	MtrunA17_Chr1g0202031	96.396	222	2	2	1	221	1	217	4.74e-152	421
Msa0097940	MtrunA17_Chr6g0463641	79.630	216	37	3	6	221	2	210	2.45e-107	307
Msa0097940	MtrunA17_Chr4g0050821	65.550	209	71	1	13	221	17	224	1.45e-85	253
Msa0097940	MtrunA17_Chr4g0050841	66.832	202	66	1	20	221	24	224	1.65e-85	253
Msa0097940	MtrunA17_Chr4g0050831	66.832	202	66	1	20	221	24	224	3.51e-85	251
Msa0097940	MtrunA17_Chr4g0050811	61.611	211	73	2	15	221	33	239	6.80e-84	249
Msa0097940	MtrunA17_Chr6g0479471	69.312	189	48	2	28	216	29	207	3.26e-79	236
Msa0097940	MtrunA17_Chr2g0278621	69.312	189	48	2	28	216	29	207	3.55e-79	236
Msa0097940	MtrunA17_Chr4g0050851	57.870	216	84	3	9	221	20	231	6.49e-71	216

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0097940	AT3G43660.1	66.516	221	51	4	1	221	1	198	5.34e-101	291
Msa0097940	AT3G43630.1	73.039	204	41	4	18	218	2	194	4.68e-94	273
Msa0097940	AT1G21140.1	70.673	208	48	4	18	221	2	200	7.42e-94	273
Msa0097940	AT1G76800.1	71.707	205	48	1	17	221	2	196	1.82e-92	270
Msa0097940	AT3G25190.1	59.906	212	80	2	14	221	7	217	1.98e-68	209

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Find 43 sgRNAs with CRISPR-Local

Find 57 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGACAATATTGAAAG+AGG	0.486922	1_3:+3825182	Msa0097940:CDS
AAAGATTATAAGGTTAGGGT+AGG	0.554719	1_3:+3825332	Msa0097940:CDS
AAGAGGTAATAATATTGAAG+AGG	0.573020	1_3:+3825199	Msa0097940:CDS
ACCAAGTTGATTGGGTCAAG+TGG	0.451627	1_3:+3825494	Msa0097940:CDS
ACTTGGAGGTTGGATTGCTA+TGG	0.458097	1_3:+3825454	Msa0097940:CDS
AGTGGTAAGGTCTTGTTTGA+GGG	0.418892	1_3:+3825427	Msa0097940:CDS
AGTGTTGGGTAAGGCACCAG+TGG	0.645814	1_3:+3825409	Msa0097940:CDS
ATAAAAGCAATGATCTTGTC+AGG	0.437497	1_3:+3825068	Msa0097940:CDS
ATCACAATGGCTACGTGCCG+CGG	0.590039	1_3:+3824974	Msa0097940:CDS
ATCATTAGCTCCTAAAACCG+CGG	0.609497	1_3:-3824991	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGGTTAAGGGATGAATTAT+TGG	-	chr1_3:3824868-3824887	None:intergenic	30.0%
ATAAAAGCAATGATCTTGTC+AGG	+	chr1_3:3825068-3825087	Msa0097940:CDS	30.0%
AAAGATTATAAGGTTAGGGT+AGG	+	chr1_3:3825332-3825351	Msa0097940:CDS	30.0%
TTCAACAGCATCACTAATGA+TGG	+	chr1_3:3825022-3825041	Msa0097940:CDS	35.0%
TCAACAGCATCACTAATGAT+GGG	+	chr1_3:3825023-3825042	Msa0097940:CDS	35.0%
TTCATCGCTTTCGATCTCTA+GGG	-	chr1_3:3824937-3824956	None:intergenic	40.0%
ATTCATCGCTTTCGATCTCT+AGG	-	chr1_3:3824938-3824957	None:intergenic	40.0%
ATCATTAGCTCCTAAAACCG+CGG	-	chr1_3:3824994-3825013	None:intergenic	40.0%
ATGAAAGATGCTGCAAGAAG+TGG	-	chr1_3:3825311-3825330	None:intergenic	40.0%
TTGCTTTGGTTGTGTTTGGT+TGG	+	chr1_3:3825378-3825397	Msa0097940:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	3824858	3825523	3824858	ID=Msa0097940;Name=Msa0097940
chr1_3	mRNA	3824858	3825523	3824858	ID=Msa0097940-mRNA-1;Parent=Msa0097940;Name=Msa0097940-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|221
chr1_3	exon	3824858	3825523	3824858	ID=Msa0097940-mRNA-1:exon:1221;Parent=Msa0097940-mRNA-1
chr1_3	CDS	3824858	3825523	3824858	ID=Msa0097940-mRNA-1:cds;Parent=Msa0097940-mRNA-1

Gene Sequence

>Msa0097940

ATGGAATCCAATAATTCATCCCTTAACCAAACAAAATTTGTACATCAAAACAATGACCATGATCAACAAAATGCAACCCTAGAGATCGAAAGCGATGAATTTGATTATTCAAAAAGATCACAATGGCTACGTGCCGCGGTTTTAGGAGCTAATGATGGATTAGTTTCAACAGCATCACTAATGATGGGTGTAGGAGCAGTGAAACAAGACATAAAAGCAATGATCTTGTCAGGTTTTGCTGGACTTGTAGCTGGTGCATGTAGCATGGCAATAGGTGAGTTTGTATCTGTTTATTCACAACTTGACATTGAAATTGCTCAATTAAAAAGAGACAATATTGAAAGAGGTAATAATATTGAAGAGGAAGATGTTATTGAGAAAGAAAGTTTGCCAAATCCTTTACAAGCAGCAGCAGCTTCAGCTTTAGCATTTTCAATTGGTGCAATGGTGCCACTTCTTGCAGCATCTTTCATTAAAGATTATAAGGTTAGGGTAGGTGTTGTTTTGGGAGCAGTTAGTTTTGCTTTGGTTGTGTTTGGTTGGTTGGGTGCAGTGTTGGGTAAGGCACCAGTGGTAAGGTCTTGTTTGAGGGTCTTACTTGGAGGTTGGATTGCTATGGCCATAACTTTTGGACTAACCAAGTTGATTGGGTCAAGTGGGCTATAG

Protein sequence

>Msa0097940

MESNNSSLNQTKFVHQNNDHDQQNATLEIESDEFDYSKRSQWLRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILSGFAGLVAGACSMAIGEFVSVYSQLDIEIAQLKRDNIERGNNIEEEDVIEKESLPNPLQAAAASALAFSIGAMVPLLAASFIKDYKVRVGVVLGAVSFALVVFGWLGAVLGKAPVVRSCLRVLLGGWIAMAITFGLTKLIGSSGL*