AlfalfaGEDB | Msa0846810

M. sativa cultivar zhongmu-4 / Msa0846810

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0846810	XP_003614006.1	96.310	271	10	0	1	271	1	271	3.25e-165	468

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0846810	G7JXW3	96.310	271	10	0	1	271	1	271	1.55e-165	468

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0846810	-0.814679	1.362636e-51	-8.615850e-47
Msa0008050	Msa0846810	0.800110	1.680330e-48	-8.615850e-47
Msa0011720	Msa0846810	0.828704	7.755325e-55	-8.615850e-47
Msa0012060	Msa0846810	0.812186	4.812203e-51	-8.615850e-47
Msa0017510	Msa0846810	0.809269	2.057012e-50	-8.615850e-47
Msa0026490	Msa0846810	0.800157	1.644451e-48	-8.615850e-47
Msa0029850	Msa0846810	0.811279	7.581040e-51	-8.615850e-47
Msa0033440	Msa0846810	0.809319	2.006706e-50	-8.615850e-47
Msa0046310	Msa0846810	0.802519	5.399116e-49	-8.615850e-47
Msa0048000	Msa0846810	0.842802	2.070392e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0846810	MtrunA17_Chr5g0418611	96.310	271	10	0	1	271	1	271	2.99e-169	468
Msa0846810	MtrunA17_Chr4g0042951	37.288	118	55	5	1	105	1	112	1.08e-13	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 102 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGTTATTCTGGTGGT+GGG	0.545962	5_4:-27572091	Msa0846810:CDS
AACAATTATTATGGTGGTCA+TGG	0.408941	5_4:-27572371	Msa0846810:CDS
AACCGATCTAGTGGTGGTTA+TGG	0.402760	5_4:-27571963	Msa0846810:CDS
AACCGTTCTAGTGGTGGCTA+TGG	0.494450	5_4:-27571699	Msa0846810:CDS
AACGAGAGTGGGTATGGAGG+TGG	0.536019	5_4:-27571864	Msa0846810:CDS
AACTACAACAACAATTATTA+TGG	0.294899	5_4:-27572380	Msa0846810:CDS
AAGTATCATGAGAGTGGTTA+TGG	0.384520	5_4:-27572029	Msa0846810:CDS
AAGTCAACATGACTCTTCCT+CGG	0.527764	5_4:-27572132	Msa0846810:CDS
AATAACGAGAGTGGGTATGG+AGG	0.576193	5_4:-27571867	Msa0846810:CDS
AATAATAACGAGAGTGGGTA+TGG	0.434805	5_4:-27571870	Msa0846810:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAATTATTATGGTGGTCA+TGG	-	chr5_4:27571608-27571627	Msa0846810:CDS	30.0%
ACAATTATTATGGTGGTCAT+GGG	-	chr5_4:27571609-27571628	Msa0846810:CDS	30.0%
TGGTGGTTATTATGGAAATA+AGG	-	chr5_4:27571922-27571941	Msa0846810:CDS	30.0%
GATAATAAGTATCATGAGAG+TGG	-	chr5_4:27571944-27571963	Msa0846810:CDS	30.0%
AACAATTATTATGGTGGTCA+TGG	-	chr5_4:27571608-27571627	Msa0846810:CDS	30.0%
ACAATTATTATGGTGGTCAT+GGG	-	chr5_4:27571609-27571628	Msa0846810:CDS	30.0%
TGGTGGTTATTATGGAAATA+AGG	-	chr5_4:27571922-27571941	Msa0846810:CDS	30.0%
GATAATAAGTATCATGAGAG+TGG	-	chr5_4:27571944-27571963	Msa0846810:CDS	30.0%
AAAAAAGCTCAGTACTCGAA+TGG	+	chr5_4:27571658-27571677	None:intergenic	35.0%
TGCTCCTAAAATATTGGAAG+CGG	+	chr5_4:27571765-27571784	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	27571593	27572408	27571593	ID=Msa0846810;Name=Msa0846810
chr5_4	mRNA	27571593	27572408	27571593	ID=Msa0846810-mRNA-1;Parent=Msa0846810;Name=Msa0846810-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|271
chr5_4	exon	27571593	27572408	27571593	ID=Msa0846810-mRNA-1:exon:10584;Parent=Msa0846810-mRNA-1
chr5_4	CDS	27571593	27572408	27571593	ID=Msa0846810-mRNA-1:cds;Parent=Msa0846810-mRNA-1

Gene Sequence

>Msa0846810

ATGGACAACTACAACAACAATTATTATGGTGGTCATGGGAAGGAACAACGTCACGGCCAGAACCATTCGAGTACTGAGCTTTTTTCCTCTGCTAAGGTCTTGTCGGACGCGGCACAGTCCGTTTACAACCATGAACCTGGCAAGGTGAACAAGGCCAAGGTTGCGGTTGCCGCTTCCAATATTTTAGGAGCAACTGGTGTTGTTGATGAGAGAAAGGGCGTTGGCATGTATGTTGATAAAGCCGCTGGTTATCTAAGTCAACATGACTCTTCCTCGGGTGTTCCTACCGGACGAAAAAATGGTTATTCTGGTGGTGGGTTTGGTGGAAATGGTGGTTATTATGGAAATAAGGATAATAAGTATCATGAGAGTGGTTATGGACGTTATGGTGGTGGTACTACTGGTGGTGGTTACAGTCTTGATAACCGATCTAGTGGTGGTTATGGAGGTGGACGTTCTGGTGGAGCTACTGGTGGTGGTTATGGTTCTAATGGTCGTTCCGGTTGTGGTTATGGGAATAATAACGAGAGTGGGTATGGAGGTGGACGTTTTGGTGGTGGTTATGGTTCCGATGATCGTTCTGGTGGTGGTTATGGCGCCAGTGACCGTTATGAGAGTGAGTATGGACGTTCTGGTGGTGGATATGGTGATGGAGGACGTTCGAGTATTGGTGGATATGGAGAAGAAAACCGTTCTAGTGGTGGCTATGGATATGGAGGGCGTTCTGGTGGTTATGGTAATGAGCAAAGTTTTGGAGGGTATGGTAGGGATGGTCGTGATAGTCGCTTCAGTGGTGGATACGGCTATGTTAATTAG

Protein sequence

>Msa0846810

MDNYNNNYYGGHGKEQRHGQNHSSTELFSSAKVLSDAAQSVYNHEPGKVNKAKVAVAASNILGATGVVDERKGVGMYVDKAAGYLSQHDSSSGVPTGRKNGYSGGGFGGNGGYYGNKDNKYHESGYGRYGGGTTGGGYSLDNRSSGGYGGGRSGGATGGGYGSNGRSGCGYGNNNESGYGGGRFGGGYGSDDRSGGGYGASDRYESEYGRSGGGYGDGGRSSIGGYGEENRSSGGYGYGGRSGGYGNEQSFGGYGRDGRDSRFSGGYGYVN*