AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0731710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0731710 MtrunA17_Chr5g0426121 100.000 40 0 0 81 120 612 651 3.15e-20 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 77 sgRNAs with CRISPR-Local

Find 439 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGATACATGTACTCATTT+TGG 0.142752 5_1:+43147632 Msa0731710:CDS
CTTACTGATATTACATTAAA+TGG 0.173041 5_1:-43147920 None:intergenic
GGTGGTGTGGCGGATGATTT+TGG 0.212468 5_1:+43141614 Msa0731710:CDS
GGGTTTGTGATGATGATTTA+AGG 0.320271 5_1:+43147852 Msa0731710:three_prime_UTR
GGAGGAGTGGCAGTGGCTTT+AGG 0.320762 5_1:+43141656 Msa0731710:CDS
GGAGAGGTGGATGCGGATTC+TGG 0.323475 5_1:+43141545 Msa0731710:CDS
CTTTGCTTCACTCTTAAACT+TGG 0.334008 5_1:+43147831 Msa0731710:three_prime_UTR
TTTGGAAATTTCAGTACATT+GGG 0.341105 5_1:+43147696 Msa0731710:CDS
GCAGGCGCTGCTGGTGTTGC+TGG 0.343051 5_1:+43141680 Msa0731710:CDS
GCTTTAGGTGCAGGCGCTGC+TGG 0.357516 5_1:+43141671 Msa0731710:CDS
GGTGTTGCTGGTGAAGCTTT+TGG 0.367154 5_1:+43141692 Msa0731710:CDS
CAATATGTAGATGATGAAAA+TGG 0.386319 5_1:+43146396 Msa0731710:CDS
TTGCTGATTTCCAATGTGTT+TGG 0.386602 5_1:+43147678 Msa0731710:CDS
GGTGGTGTGGTGGTGGAAGA+AGG 0.389305 5_1:+43141635 Msa0731710:CDS
ATGGTAGGAGCAACGGGAGC+GGG 0.397321 5_1:+43141497 Msa0731710:CDS
CAAAATATATACTTTACAAT+AGG 0.415780 5_1:-43147771 None:intergenic
ACAGAGATGGTAGGAGCAAC+GGG 0.421092 5_1:+43141491 None:intergenic
AATGGCAGAAAATGTAGTTA+AGG 0.429021 5_1:-43147902 None:intergenic
GTGGCAGTGGCTTTAGGTGC+AGG 0.443737 5_1:+43141662 Msa0731710:CDS
CAGAATCTTCAAGTAGTACT+AGG 0.447575 5_1:+43146313 Msa0731710:CDS
GTTTGGAAATTTCAGTACAT+TGG 0.463402 5_1:+43147695 Msa0731710:CDS
ACATTTGTACAAGAAGCAAA+AGG 0.465025 5_1:-43147740 None:intergenic
TGTTCCAGAGTGGTCGCCGC+AGG 0.467747 5_1:+43146356 Msa0731710:CDS
TGAAGCAAAGATTCAAAAGT+TGG 0.469069 5_1:-43147818 None:intergenic
TGGTGCGGCGGTGGGTGAGG+TGG 0.472656 5_1:+43141712 Msa0731710:CDS
GCGGCGGTGGGTGAGGTGGA+AGG 0.473237 5_1:+43141716 Msa0731710:CDS
GACAGAGATGGTAGGAGCAA+CGG 0.481799 5_1:+43141490 None:intergenic
TTTGCTTCACTCTTAAACTT+GGG 0.483861 5_1:+43147832 Msa0731710:three_prime_UTR
GAAGCCTGCGGCGACCACTC+TGG 0.490330 5_1:-43146360 None:intergenic
GGAGATGGTGAGGATGTTGG+TGG 0.496584 5_1:+43141596 Msa0731710:CDS
GGCAGAAAATGTAGTTAAGG+AGG 0.508133 5_1:-43147899 None:intergenic
ACTAGGAGAGAAAGAGATGG+AGG 0.512828 5_1:+43146330 Msa0731710:CDS
TTCAGTGGGAGAGGTGGATG+CGG 0.516152 5_1:+43141538 Msa0731710:CDS
AGTACTAGGAGAGAAAGAGA+TGG 0.527396 5_1:+43146327 Msa0731710:CDS
GCGGATTCTGGTGTTGGAGA+AGG 0.527487 5_1:+43141557 Msa0731710:CDS
GAAGGTGGAGATGAAACCTT+GGG 0.529585 5_1:+43141575 Msa0731710:CDS
CAGACTTGAAGCAAGGGATG+TGG 0.533561 5_1:+43147570 Msa0731710:CDS
TGCTTCTTGTACAAATGTGT+AGG 0.535501 5_1:+43147745 Msa0731710:CDS
TGGGATGAAGACCATCGGAT+TGG 0.540025 5_1:+43147611 Msa0731710:CDS
CATTTGTACAAGAAGCAAAA+GGG 0.546777 5_1:-43147739 None:intergenic
GGAAGAAGGAGGAGTGGCAG+TGG 0.546791 5_1:+43141649 Msa0731710:CDS
AGATTCGATAGGAGATTCAG+TGG 0.549294 5_1:+43141523 Msa0731710:CDS
GTAGGAGCAACGGGAGCGGG+AGG 0.550900 5_1:+43141500 Msa0731710:CDS
GATGGTAGGAGCAACGGGAG+CGG 0.555018 5_1:+43141496 None:intergenic
CCGATGGTCTTCATCCCACT+TGG 0.555532 5_1:-43147606 None:intergenic
ACTGAAATTTCCAAACACAT+TGG 0.556965 5_1:-43147688 None:intergenic
TGGTGAGGATGTTGGTGGTG+TGG 0.557271 5_1:+43141601 Msa0731710:CDS
AGAAGGTGGAGATGAAACCT+TGG 0.557383 5_1:+43141574 Msa0731710:CDS
AGGAGATTCAGTGGGAGAGG+TGG 0.560106 5_1:+43141532 Msa0731710:CDS
GTGGATGCGGATTCTGGTGT+TGG 0.563533 5_1:+43141551 Msa0731710:CDS
TCCCTTGCTTCAAGTCTGCA+TGG 0.569526 5_1:-43147565 None:intergenic
CATTTAATGTAATATCAGTA+AGG 0.570309 5_1:+43147921 Msa0731710:three_prime_UTR
TACCATGCAGACTTGAAGCA+AGG 0.582474 5_1:+43147563 Msa0731710:CDS
TGAGGATGTTGGTGGTGTGG+CGG 0.586591 5_1:+43141604 Msa0731710:CDS
TTGGGAGATGGTGAGGATGT+TGG 0.587890 5_1:+43141593 Msa0731710:CDS
GATAGGAGATTCAGTGGGAG+AGG 0.590174 5_1:+43141529 Msa0731710:CDS
GGTGTGGTGGTGGAAGAAGG+AGG 0.597248 5_1:+43141638 Msa0731710:CDS
GCAGAAAATGTAGTTAAGGA+GGG 0.599217 5_1:-43147898 None:intergenic
GGAAATGCAATCTCACCAAG+TGG 0.600524 5_1:+43147591 Msa0731710:CDS
GGTGGTGGAAGAAGGAGGAG+TGG 0.603709 5_1:+43141643 Msa0731710:CDS
GATTCTGGTGTTGGAGAAGG+TGG 0.605286 5_1:+43141560 Msa0731710:CDS
ACCATGCAGACTTGAAGCAA+GGG 0.610383 5_1:+43147564 Msa0731710:CDS
TACATGTATCTCCAATCCGA+TGG 0.617380 5_1:-43147622 None:intergenic
AACATCCTCACCATCTCCCA+AGG 0.620740 5_1:-43141591 None:intergenic
GAGAGAAAGACAGAGATGGT+AGG 0.622191 5_1:+43141482 None:intergenic
AGCAAAGATTCAAAAGTTGG+TGG 0.626379 5_1:-43147815 None:intergenic
TTGGAAATTTCAGTACATTG+GGG 0.627601 5_1:+43147697 Msa0731710:CDS
GGAGATGAAACCTTGGGAGA+TGG 0.632512 5_1:+43141581 Msa0731710:CDS
GGAGCGGGAGGAGATTCGAT+AGG 0.633440 5_1:+43141512 Msa0731710:CDS
CCAAGTGGGATGAAGACCAT+CGG 0.638886 5_1:+43147606 Msa0731710:CDS
ACTACTTGAAGATTCTGCTG+TGG 0.651572 5_1:-43146307 None:intergenic
TGAAACCTTGGGAGATGGTG+AGG 0.652850 5_1:+43141586 Msa0731710:CDS
TGGAAATTTCAGTACATTGG+GGG 0.657364 5_1:+43147698 Msa0731710:CDS
GATTCGATAGGAGATTCAGT+GGG 0.674862 5_1:+43141524 Msa0731710:CDS
ATGGAGGTGTTGTTCCAGAG+TGG 0.679190 5_1:+43146346 Msa0731710:CDS
TCAGAGAAGTTAGAAGCCTG+CGG 0.699321 5_1:-43146372 None:intergenic
GAAATGCAATCTCACCAAGT+GGG 0.713881 5_1:+43147592 Msa0731710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATATGTGTTTTTTTTTT+CGG + chr5_1:43143043-43143062 Msa0731710:intron 10.0%
!!! TTTTGATCTTTTAATATATA+AGG - chr5_1:43143763-43143782 None:intergenic 10.0%
!!! AATAAAACTATTTTCAATAT+AGG + chr5_1:43146603-43146622 Msa0731710:intron 10.0%
!! TCAAATGATTAATAATTACA+GGG + chr5_1:43142031-43142050 Msa0731710:intron 15.0%
!!! ACACAGTTATTTTTATTTAA+GGG - chr5_1:43142134-43142153 None:intergenic 15.0%
!!! TACACAGTTATTTTTATTTA+AGG - chr5_1:43142135-43142154 None:intergenic 15.0%
!! AAAAATAACTGTGTAAAATT+TGG + chr5_1:43142140-43142159 Msa0731710:intron 15.0%
!!! TCGAGTATTTTTAATTTTAA+TGG + chr5_1:43142841-43142860 Msa0731710:intron 15.0%
!!! ATAAGTTTTAGTTGAAAAAT+TGG + chr5_1:43143010-43143029 Msa0731710:intron 15.0%
!! AGAAATGATTGTAATAATAT+TGG - chr5_1:43143424-43143443 None:intergenic 15.0%
!! AAGATGTATAAAAATATCAA+TGG + chr5_1:43143986-43144005 Msa0731710:intron 15.0%
!! AAAAGTGATATATTTCATAT+AGG - chr5_1:43144589-43144608 None:intergenic 15.0%
!! TCAAAACAAAAATAAACAAA+TGG + chr5_1:43144721-43144740 Msa0731710:intron 15.0%
!!! TTACTTTGTTACTTTATATT+TGG - chr5_1:43146086-43146105 None:intergenic 15.0%
!!! NNNNNNNNNCAACTACATTT+TGG + chr5_1:43146262-43146281 Msa0731710:intron 15.0%
!!! TAAAGTACATAGTTTTATTA+AGG - chr5_1:43146876-43146895 None:intergenic 15.0%
!! GTAATAGATAAAAAATCATT+TGG + chr5_1:43147241-43147260 Msa0731710:intron 15.0%
!!! ATATTTTTGTAATACATTCA+GGG - chr5_1:43147300-43147319 None:intergenic 15.0%
!! CAAAATATATACTTTACAAT+AGG - chr5_1:43147774-43147793 None:intergenic 15.0%
!! ATTCTTAGAAGAAAGAAAAT+TGG + chr5_1:43141785-43141804 Msa0731710:intron 20.0%
!! CTCAAATGATTAATAATTAC+AGG + chr5_1:43142030-43142049 Msa0731710:intron 20.0%
!! GATTAAAAAGAAACTCTATT+TGG + chr5_1:43142910-43142929 Msa0731710:intron 20.0%
!! CTCTATTTGGTAAAATTTAT+TGG + chr5_1:43142923-43142942 Msa0731710:intron 20.0%
!!! TTTTACTTTATTGTCATCTA+TGG - chr5_1:43143314-43143333 None:intergenic 20.0%
!!! AATCAAGATTTTAATGCTTT+CGG - chr5_1:43143578-43143597 None:intergenic 20.0%
!! TGATTAAAAGCAATTATCAA+AGG + chr5_1:43143593-43143612 Msa0731710:intron 20.0%
!! TGACATATTTACACAAAAAT+TGG + chr5_1:43144514-43144533 Msa0731710:intron 20.0%
!! TATATTTCATATAGGAGTTT+AGG - chr5_1:43144581-43144600 None:intergenic 20.0%
!! AATTGAAAAGAAAACTAACA+AGG + chr5_1:43144663-43144682 Msa0731710:intron 20.0%
!! TATAATGATAACAATGAATG+AGG + chr5_1:43144910-43144929 Msa0731710:intron 20.0%
!! AAAAATAGAATAAGTTGTCA+AGG - chr5_1:43145199-43145218 None:intergenic 20.0%
!!! TTTTGAATTGTTTGAAAGTA+TGG - chr5_1:43145664-43145683 None:intergenic 20.0%
!! TATTAAAAACCTAGAATAAC+AGG + chr5_1:43145864-43145883 Msa0731710:intron 20.0%
!!! GGTTTAATAACTTAGTTTTT+TGG - chr5_1:43146065-43146084 None:intergenic 20.0%
!! TGAAAATTGTAAACAACTAA+TGG + chr5_1:43146783-43146802 Msa0731710:intron 20.0%
!! GATAGTAAAAAAGAAAACAT+GGG - chr5_1:43147080-43147099 None:intergenic 20.0%
!! GTCTATCAAGAAAATTATTA+AGG + chr5_1:43147136-43147155 Msa0731710:intron 20.0%
!! AAAATTATTAAGGATGTGTT+TGG + chr5_1:43147146-43147165 Msa0731710:intron 20.0%
!! AAATTATTAAGGATGTGTTT+GGG + chr5_1:43147147-43147166 Msa0731710:intron 20.0%
!!! GATATTTTTGTAATACATTC+AGG - chr5_1:43147301-43147320 None:intergenic 20.0%
!! TAACTAACAGAATACATATT+TGG - chr5_1:43147357-43147376 None:intergenic 20.0%
!! CTTACTGATATTACATTAAA+TGG - chr5_1:43147923-43147942 None:intergenic 20.0%
!! CATTTAATGTAATATCAGTA+AGG + chr5_1:43147921-43147940 Msa0731710:three_prime_UTR 20.0%
! AGAAAGAAAATTGGAAAATG+TGG + chr5_1:43141794-43141813 Msa0731710:intron 25.0%
!! CTAATTACAAAATTTTGCTG+AGG - chr5_1:43142002-43142021 None:intergenic 25.0%
!! CTCAGCAAAATTTTGTAATT+AGG + chr5_1:43142000-43142019 Msa0731710:intron 25.0%
!! CTTTTTACCCAAGTATATAA+GGG - chr5_1:43142260-43142279 None:intergenic 25.0%
! TGATACATGAGAATTGTAAT+CGG + chr5_1:43142484-43142503 Msa0731710:intron 25.0%
! AAATCTGACTTTCAAAAAGA+AGG - chr5_1:43142707-43142726 None:intergenic 25.0%
! TACATAGTTATATGACATGT+AGG - chr5_1:43143179-43143198 None:intergenic 25.0%
! TTGTTATCGTTTAAGGAATT+TGG - chr5_1:43143509-43143528 None:intergenic 25.0%
! CAAAAGATTACATAATAGCT+TGG + chr5_1:43143778-43143797 Msa0731710:intron 25.0%
!! TTTTATACATCTTAAGAGAG+AGG - chr5_1:43143979-43143998 None:intergenic 25.0%
!! AGGTAAGAATGCTATTTAAA+TGG + chr5_1:43144031-43144050 Msa0731710:intron 25.0%
!!! TTGTTTTGCAAGATTCTTTA+TGG - chr5_1:43144546-43144565 None:intergenic 25.0%
!!! CTTTTCAATTGATTTGTTTG+AGG - chr5_1:43144653-43144672 None:intergenic 25.0%
! TACAAAAGAAATGTCATATG+TGG + chr5_1:43145058-43145077 Msa0731710:intron 25.0%
! ACAAAAGAAATGTCATATGT+GGG + chr5_1:43145059-43145078 Msa0731710:intron 25.0%
! AAAAAATGTTCCTCTTTGAT+AGG - chr5_1:43145101-43145120 None:intergenic 25.0%
! ACAAAGTACAAAAAGGTTAA+GGG + chr5_1:43145406-43145425 Msa0731710:intron 25.0%
!! AATTGTTTGAAAGTATGGAA+AGG - chr5_1:43145659-43145678 None:intergenic 25.0%
! CATAACTAAAACAAGTTAGA+CGG + chr5_1:43145700-43145719 Msa0731710:intron 25.0%
!!! ATAAATTTTAAAGTGCTCCA+TGG - chr5_1:43145965-43145984 None:intergenic 25.0%
! CAATATGTAGATGATGAAAA+TGG + chr5_1:43146396-43146415 Msa0731710:CDS 25.0%
!! TTAAGTTGTTTATCCAAACT+GGG - chr5_1:43146531-43146550 None:intergenic 25.0%
!! ATTAAGCTTTTTATCCAACT+GGG - chr5_1:43146630-43146649 None:intergenic 25.0%
!! GCTTATTTGAGTTTATTTAC+TGG - chr5_1:43146840-43146859 None:intergenic 25.0%
! TCAAATAAGCTAATTCAAAC+TGG + chr5_1:43146850-43146869 Msa0731710:intron 25.0%
! GGATAGTAAAAAAGAAAACA+TGG - chr5_1:43147081-43147100 None:intergenic 25.0%
! ACTCTTCAATTTAAAAGAAC+AGG - chr5_1:43147102-43147121 None:intergenic 25.0%
!! TGTTCTTTTAAATTGAAGAG+TGG + chr5_1:43147101-43147120 Msa0731710:intron 25.0%
! ATTACTCCACTATTAATCAA+GGG - chr5_1:43147226-43147245 None:intergenic 25.0%
! TATTACTCCACTATTAATCA+AGG - chr5_1:43147227-43147246 None:intergenic 25.0%
! ATGTATTCTGTTAGTTACTT+TGG + chr5_1:43147360-43147379 Msa0731710:intron 25.0%
! AAACAAAAATACACATTCGA+GGG - chr5_1:43147386-43147405 None:intergenic 25.0%
!! TGTCTTCTTTTAGTAGTTTA+CGG - chr5_1:43147420-43147439 None:intergenic 25.0%
! TTTGGAAATTTCAGTACATT+GGG + chr5_1:43147696-43147715 Msa0731710:CDS 25.0%
!! ATATATTTTGTGTAGTGATC+AGG + chr5_1:43147784-43147803 Msa0731710:three_prime_UTR 25.0%
!! TATATTTTGTGTAGTGATCA+GGG + chr5_1:43147785-43147804 Msa0731710:three_prime_UTR 25.0%
! ATTACAAAATTTTGCTGAGG+TGG - chr5_1:43141999-43142018 None:intergenic 30.0%
TAATAATTACAGGGACAAGA+TGG + chr5_1:43142040-43142059 Msa0731710:intron 30.0%
AATAATTACAGGGACAAGAT+GGG + chr5_1:43142041-43142060 Msa0731710:intron 30.0%
TTCAAATGCCCTATAATTAC+AGG + chr5_1:43142090-43142109 Msa0731710:intron 30.0%
TCAAATGCCCTATAATTACA+GGG + chr5_1:43142091-43142110 Msa0731710:intron 30.0%
! TTTTCGTCCCTGTAATTATA+GGG - chr5_1:43142101-43142120 None:intergenic 30.0%
AATTGTTCCAATACTTTGAC+TGG + chr5_1:43142186-43142205 Msa0731710:intron 30.0%
ATGGGATGCATAAAAATTGT+GGG + chr5_1:43142228-43142247 Msa0731710:intron 30.0%
! CCTTTTTACCCAAGTATATA+AGG - chr5_1:43142261-43142280 None:intergenic 30.0%
CCTTATATACTTGGGTAAAA+AGG + chr5_1:43142258-43142277 Msa0731710:intron 30.0%
! ATTTAATCGAAAGTCTTGTG+AGG - chr5_1:43142308-43142327 None:intergenic 30.0%
ATCCAAGTAACATATTCACT+AGG - chr5_1:43142360-43142379 None:intergenic 30.0%
GATACATGAGAATTGTAATC+GGG + chr5_1:43142485-43142504 Msa0731710:intron 30.0%
AGATGTCGAATATTTAACCA+AGG - chr5_1:43142740-43142759 None:intergenic 30.0%
!!! TGTGTTTTTTTTTTCGGTGT+TGG + chr5_1:43143049-43143068 Msa0731710:intron 30.0%
!!! TTTTTTTTTTCGGTGTTGGT+CGG + chr5_1:43143053-43143072 Msa0731710:intron 30.0%
TTTCACAATAGTTCACGTTA+AGG + chr5_1:43143253-43143272 Msa0731710:intron 30.0%
TTCACAATAGTTCACGTTAA+GGG + chr5_1:43143254-43143273 Msa0731710:intron 30.0%
! ATCGACTTTGTTATCGTTTA+AGG - chr5_1:43143516-43143535 None:intergenic 30.0%
TAAACGATAACAAAGTCGAT+CGG + chr5_1:43143516-43143535 Msa0731710:intron 30.0%
CAAAGAGATTCAAGATGATT+TGG - chr5_1:43143691-43143710 None:intergenic 30.0%
TTACCTCAATACTACATAGA+AGG + chr5_1:43143804-43143823 Msa0731710:intron 30.0%
TAGACATGTAAACTAATGCA+AGG + chr5_1:43143840-43143859 Msa0731710:intron 30.0%
TAAACTAATGCAAGGAATGA+AGG + chr5_1:43143848-43143867 Msa0731710:intron 30.0%
TTGATGTCTCAATGAATCTA+GGG + chr5_1:43143898-43143917 Msa0731710:intron 30.0%
AAACACAAAGCAAGTGATTA+AGG - chr5_1:43143935-43143954 None:intergenic 30.0%
! TTGTATTTTCCTGCACAAAA+AGG + chr5_1:43144466-43144485 Msa0731710:intron 30.0%
! TGTATTTTCCTGCACAAAAA+GGG + chr5_1:43144467-43144486 Msa0731710:intron 30.0%
AAAGAAAACTAACAAGGCTT+TGG + chr5_1:43144669-43144688 Msa0731710:intron 30.0%
! TTAGTTTGAATCTAGAGTAG+CGG - chr5_1:43144785-43144804 None:intergenic 30.0%
TATGATGTATAGTTGTGCTT+AGG - chr5_1:43144823-43144842 None:intergenic 30.0%
! TACTTTCAAAGAAGTGTGTT+AGG - chr5_1:43144883-43144902 None:intergenic 30.0%
! GCTAACATCCAATTTAAGTT+AGG + chr5_1:43144958-43144977 Msa0731710:intron 30.0%
!!! TTTTTGAGACGATATTTGGA+TGG - chr5_1:43144987-43145006 None:intergenic 30.0%
!!! ATGCTTTTTGAGACGATATT+TGG - chr5_1:43144991-43145010 None:intergenic 30.0%
! TCTCAAAAAGCATAAAAGCA+TGG + chr5_1:43144998-43145017 Msa0731710:intron 30.0%
CAAAAGAAATGTCATATGTG+GGG + chr5_1:43145060-43145079 Msa0731710:intron 30.0%
TTCTTTGATTCAATGTTGTC+AGG + chr5_1:43145277-43145296 Msa0731710:intron 30.0%
GGCATTATATGTTAAGTTTC+TGG - chr5_1:43145319-43145338 None:intergenic 30.0%
!!! AGTTTTGTTGCATTCAAGTT+GGG - chr5_1:43145353-43145372 None:intergenic 30.0%
GACAAAGTACAAAAAGGTTA+AGG + chr5_1:43145405-43145424 Msa0731710:intron 30.0%
AGTTCATGGTTGAATCTTAT+AGG - chr5_1:43145457-43145476 None:intergenic 30.0%
TATAAGATTCAACCATGAAC+TGG + chr5_1:43145456-43145475 Msa0731710:intron 30.0%
TTTGTCAAAAATCCAGTTCA+TGG - chr5_1:43145471-43145490 None:intergenic 30.0%
ATATTGACAGTTCATGTTTG+AGG + chr5_1:43145529-43145548 Msa0731710:intron 30.0%
TCAATCTGTTGTATATATGC+TGG - chr5_1:43145739-43145758 None:intergenic 30.0%
TAGTACTCAACATAAATGTG+AGG - chr5_1:43145767-43145786 None:intergenic 30.0%
CATTTATGTTGAGTACTAAG+TGG + chr5_1:43145769-43145788 Msa0731710:intron 30.0%
!!! TTTTGGTTTCCTGTTATTCT+AGG - chr5_1:43145876-43145895 None:intergenic 30.0%
!! TTGGTTTTTAACTCATGCTT+TGG - chr5_1:43146046-43146065 None:intergenic 30.0%
GTAGATGATGAAAATGGTAT+AGG + chr5_1:43146402-43146421 Msa0731710:intron 30.0%
! CTTAAGTTGTTTATCCAAAC+TGG - chr5_1:43146532-43146551 None:intergenic 30.0%
! TTAAGCTTTTTATCCAACTG+GGG - chr5_1:43146629-43146648 None:intergenic 30.0%
! CATTAAGCTTTTTATCCAAC+TGG - chr5_1:43146631-43146650 None:intergenic 30.0%
CAGTTGGATAAAAAGCTTAA+TGG + chr5_1:43146629-43146648 Msa0731710:intron 30.0%
TTTGAAAACAGCTTATGACA+TGG - chr5_1:43146809-43146828 None:intergenic 30.0%
TAAACATGTTGAGTGACAAA+AGG - chr5_1:43146979-43146998 None:intergenic 30.0%
!!! TAGCTTTTTTACCATTGAGT+TGG - chr5_1:43147041-43147060 None:intergenic 30.0%
TTACTCCACTATTAATCAAG+GGG - chr5_1:43147225-43147244 None:intergenic 30.0%
AACATCTTCAGACATATTCA+AGG - chr5_1:43147269-43147288 None:intergenic 30.0%
CAAACAAAAATACACATTCG+AGG - chr5_1:43147387-43147406 None:intergenic 30.0%
!! CTCGAATGTGTATTTTTGTT+TGG + chr5_1:43147385-43147404 Msa0731710:intron 30.0%
! GAGATACATGTACTCATTTT+GGG + chr5_1:43147633-43147652 Msa0731710:CDS 30.0%
ACTGAAATTTCCAAACACAT+TGG - chr5_1:43147691-43147710 None:intergenic 30.0%
GTTTGGAAATTTCAGTACAT+TGG + chr5_1:43147695-43147714 Msa0731710:CDS 30.0%
TTGGAAATTTCAGTACATTG+GGG + chr5_1:43147697-43147716 Msa0731710:CDS 30.0%
CATTTGTACAAGAAGCAAAA+GGG - chr5_1:43147742-43147761 None:intergenic 30.0%
ACATTTGTACAAGAAGCAAA+AGG - chr5_1:43147743-43147762 None:intergenic 30.0%
TGAAGCAAAGATTCAAAAGT+TGG - chr5_1:43147821-43147840 None:intergenic 30.0%
TTTGCTTCACTCTTAAACTT+GGG + chr5_1:43147832-43147851 Msa0731710:three_prime_UTR 30.0%
AATGGCAGAAAATGTAGTTA+AGG - chr5_1:43147905-43147924 None:intergenic 30.0%
AAGAGGGAAAGAAGAAAAGA+TGG + chr5_1:43141845-43141864 Msa0731710:intron 35.0%
! TTTTTGCCCTTAATGAACCT+GGG - chr5_1:43141901-43141920 None:intergenic 35.0%
! ATTTTTGCCCTTAATGAACC+TGG - chr5_1:43141902-43141921 None:intergenic 35.0%
! CTTTTCGTCCCTGTAATTAT+AGG - chr5_1:43142102-43142121 None:intergenic 35.0%
! CAATTTTTATGCATCCCATC+AGG - chr5_1:43142227-43142246 None:intergenic 35.0%
GATGGGATGCATAAAAATTG+TGG + chr5_1:43142227-43142246 Msa0731710:intron 35.0%
GTCCTAGTGAATATGTTACT+TGG + chr5_1:43142355-43142374 Msa0731710:intron 35.0%
CTTGTGTGACATTAATGTCA+CGG - chr5_1:43142635-43142654 None:intergenic 35.0%
! CAGATTTGACTTTGTTACCT+TGG + chr5_1:43142720-43142739 Msa0731710:intron 35.0%
TGCATAAAATATGCGAAGTC+CGG - chr5_1:43143089-43143108 None:intergenic 35.0%
ATGTACACGTGAGCATATAT+AGG + chr5_1:43143194-43143213 Msa0731710:intron 35.0%
TATATAGGATCGTTTCCACA+AGG + chr5_1:43143209-43143228 Msa0731710:intron 35.0%
ATGATTAACGTAACTCCTTG+TGG - chr5_1:43143227-43143246 None:intergenic 35.0%
AATAGTTCACGTTAAGGGTT+TGG + chr5_1:43143259-43143278 Msa0731710:intron 35.0%
CGAATGTTTAAACGCTAACT+TGG - chr5_1:43143483-43143502 None:intergenic 35.0%
ATGCTTTCGGATACTTAATC+AGG - chr5_1:43143565-43143584 None:intergenic 35.0%
TCACCTTCTATGTAGTATTG+AGG - chr5_1:43143810-43143829 None:intergenic 35.0%
CTAGATTCATTGAGACATCA+AGG - chr5_1:43143899-43143918 None:intergenic 35.0%
CTTGATGTCTCAATGAATCT+AGG + chr5_1:43143897-43143916 Msa0731710:intron 35.0%
TAGTGAATGACCTAAAAGAG+AGG + chr5_1:43144011-43144030 Msa0731710:intron 35.0%
! AGCATTCTTACCTCTCTTTT+AGG - chr5_1:43144024-43144043 None:intergenic 35.0%
! TTATTCTACCCTTTTTGTGC+AGG - chr5_1:43144478-43144497 None:intergenic 35.0%
TGCACAAAAAGGGTAGAATA+AGG + chr5_1:43144477-43144496 Msa0731710:intron 35.0%
ACAAACAAAAAGCCAAGTTG+GGG - chr5_1:43144630-43144649 None:intergenic 35.0%
GACAAACAAAAAGCCAAGTT+GGG - chr5_1:43144631-43144650 None:intergenic 35.0%
! TTTGGACAAGGTTTTCAACA+TGG + chr5_1:43144687-43144706 Msa0731710:intron 35.0%
GTGATTCAAATAAGATCGTG+TGG + chr5_1:43144743-43144762 Msa0731710:intron 35.0%
TTGGATGTTAGCATGATTGT+TGG - chr5_1:43144950-43144969 None:intergenic 35.0%
GATGGACACCTAACTTAAAT+TGG - chr5_1:43144969-43144988 None:intergenic 35.0%
! GCATAAAAGCATGGATCAAA+AGG + chr5_1:43145007-43145026 Msa0731710:intron 35.0%
! ATGACATTTCTTTTGTAGCC+CGG - chr5_1:43145055-43145074 None:intergenic 35.0%
CTACCAAGAATTACAACCTT+TGG + chr5_1:43145151-43145170 Msa0731710:intron 35.0%
TCACCAAAGGTTGTAATTCT+TGG - chr5_1:43145157-43145176 None:intergenic 35.0%
GTTTGATTGCTAATCACCAA+AGG - chr5_1:43145170-43145189 None:intergenic 35.0%
!!! GTTTTGTTGCATTCAAGTTG+GGG - chr5_1:43145352-43145371 None:intergenic 35.0%
!!! GAGTTTTGTTGCATTCAAGT+TGG - chr5_1:43145354-43145373 None:intergenic 35.0%
TTGAATGTTCCCCTATACTA+AGG + chr5_1:43145377-43145396 Msa0731710:intron 35.0%
GTTTGAGGACTTGATTCATT+TGG + chr5_1:43145544-43145563 Msa0731710:intron 35.0%
! TTGATTCATTTGGCTCAGAT+TGG + chr5_1:43145554-43145573 Msa0731710:intron 35.0%
! TGATTCATTTGGCTCAGATT+GGG + chr5_1:43145555-43145574 Msa0731710:intron 35.0%
! TGAAAGTATGGAAAGGATCA+AGG - chr5_1:43145652-43145671 None:intergenic 35.0%
ACAAGTTAGACGGTGATTAT+CGG + chr5_1:43145710-43145729 Msa0731710:intron 35.0%
ATAACAGGAAACCAAAACCT+TGG + chr5_1:43145879-43145898 Msa0731710:intron 35.0%
! ATTACTTGTGAGAAAGCGTA+AGG - chr5_1:43145905-43145924 None:intergenic 35.0%
!! TTTGTACTTTTCAAGCACTG+TGG - chr5_1:43146135-43146154 None:intergenic 35.0%
CAGAATCTTCAAGTAGTACT+AGG + chr5_1:43146313-43146332 Msa0731710:CDS 35.0%
! ATTTCTCAAAACCACTGGTT+TGG + chr5_1:43146505-43146524 Msa0731710:intron 35.0%
CTTATTTCCATAAACTCTGC+TGG - chr5_1:43146762-43146781 None:intergenic 35.0%
!! TATGTTCTAGAATCCTCACA+TGG - chr5_1:43146943-43146962 None:intergenic 35.0%
!! ATTGAGTTGGATCCATTACA+TGG - chr5_1:43147028-43147047 None:intergenic 35.0%
!! ATGTAATGGATCCAACTCAA+TGG + chr5_1:43147027-43147046 Msa0731710:intron 35.0%
TATTAAGGATGTGTTTGGGA+TGG + chr5_1:43147151-43147170 Msa0731710:intron 35.0%
ATCTTCCCCTTGATTAATAG+TGG + chr5_1:43147217-43147236 Msa0731710:intron 35.0%
! GTGTGTTTTGCTAGTCAATT+TGG + chr5_1:43147328-43147347 Msa0731710:intron 35.0%
TACTAAAAGAAGACATGTGC+TGG + chr5_1:43147425-43147444 Msa0731710:intron 35.0%
! GGAGATACATGTACTCATTT+TGG + chr5_1:43147632-43147651 Msa0731710:CDS 35.0%
!! TTGCTGATTTCCAATGTGTT+TGG + chr5_1:43147678-43147697 Msa0731710:CDS 35.0%
TGGAAATTTCAGTACATTGG+GGG + chr5_1:43147698-43147717 Msa0731710:CDS 35.0%
TGCTTCTTGTACAAATGTGT+AGG + chr5_1:43147745-43147764 Msa0731710:CDS 35.0%
AGCAAAGATTCAAAAGTTGG+TGG - chr5_1:43147818-43147837 None:intergenic 35.0%
CTTTGCTTCACTCTTAAACT+TGG + chr5_1:43147831-43147850 Msa0731710:three_prime_UTR 35.0%
! GGGTTTGTGATGATGATTTA+AGG + chr5_1:43147852-43147871 Msa0731710:three_prime_UTR 35.0%
GCAGAAAATGTAGTTAAGGA+GGG - chr5_1:43147901-43147920 None:intergenic 35.0%
AGATTCGATAGGAGATTCAG+TGG + chr5_1:43141523-43141542 Msa0731710:CDS 40.0%
GATTCGATAGGAGATTCAGT+GGG + chr5_1:43141524-43141543 Msa0731710:CDS 40.0%
AGGGAAAGAAGAAAAGATGG+AGG + chr5_1:43141848-43141867 Msa0731710:intron 40.0%
AAAGAAGAAAAGATGGAGGC+AGG + chr5_1:43141852-43141871 Msa0731710:intron 40.0%
AAGAAGAAAAGATGGAGGCA+GGG + chr5_1:43141853-43141872 Msa0731710:intron 40.0%
!! GTGTTTAATGGGTTTGTGTC+AGG - chr5_1:43141954-43141973 None:intergenic 40.0%
TGACGTGGCATGTGTTTAAT+GGG - chr5_1:43141965-43141984 None:intergenic 40.0%
! CAAAATTTTGCTGAGGTGGA+GGG - chr5_1:43141995-43142014 None:intergenic 40.0%
! ACAAAATTTTGCTGAGGTGG+AGG - chr5_1:43141996-43142015 None:intergenic 40.0%
TGTTCCAATACTTTGACTGG+TGG + chr5_1:43142189-43142208 Msa0731710:intron 40.0%
GTTCCAATACTTTGACTGGT+GGG + chr5_1:43142190-43142209 Msa0731710:intron 40.0%
TTACCCACCAGTCAAAGTAT+TGG - chr5_1:43142196-43142215 None:intergenic 40.0%
! TGGGTAAGATTTTCACCTGA+TGG + chr5_1:43142209-43142228 Msa0731710:intron 40.0%
! GGGTAAGATTTTCACCTGAT+GGG + chr5_1:43142210-43142229 Msa0731710:intron 40.0%
GACTCTGCCCTTATATACTT+GGG + chr5_1:43142250-43142269 Msa0731710:intron 40.0%
ACATGAGAATTGTAATCGGG+TGG + chr5_1:43142488-43142507 Msa0731710:intron 40.0%
ATTGCCATTGTCATTGCATC+TGG + chr5_1:43142558-43142577 Msa0731710:intron 40.0%
GTGACATTAGATGTGTTGTG+TGG - chr5_1:43142585-43142604 None:intergenic 40.0%
ATCTAATGTCACCCAATGTG+TGG + chr5_1:43142593-43142612 Msa0731710:intron 40.0%
TTAAATCTGGGCCACACATT+GGG - chr5_1:43142607-43142626 None:intergenic 40.0%
ATTAAATCTGGGCCACACAT+TGG - chr5_1:43142608-43142627 None:intergenic 40.0%
GTCACGGTGACATTAAATCT+GGG - chr5_1:43142619-43142638 None:intergenic 40.0%
TGTCACGGTGACATTAAATC+TGG - chr5_1:43142620-43142639 None:intergenic 40.0%
CATAAAATATGCGAAGTCCG+GGG - chr5_1:43143087-43143106 None:intergenic 40.0%
GCATAAAATATGCGAAGTCC+GGG - chr5_1:43143088-43143107 None:intergenic 40.0%
AAACGAGAGAATTTCGCTTG+CGG + chr5_1:43143332-43143351 Msa0731710:intron 40.0%
! TGGAAATAACGATGTCGCTT+TGG - chr5_1:43143463-43143482 None:intergenic 40.0%
ATACTTAATCAGGCTGGACA+CGG - chr5_1:43143555-43143574 None:intergenic 40.0%
TTTCGGATACTTAATCAGGC+TGG - chr5_1:43143561-43143580 None:intergenic 40.0%
CATTGAGACATCAAGGATCT+TGG - chr5_1:43143892-43143911 None:intergenic 40.0%
ATTAGCGTATCTTGCGCTAT+TGG - chr5_1:43144077-43144096 None:intergenic 40.0%
ACGCTAATAGTGTGGTAAGT+CGG + chr5_1:43144089-43144108 Msa0731710:intron 40.0%
AAGAAACACGCTATTAGCGT+GGG - chr5_1:43144221-43144240 None:intergenic 40.0%
TGTGCAGGAAAATACAAGCA+AGG - chr5_1:43144463-43144482 None:intergenic 40.0%
TTATCAAACTCTCCCCAACT+TGG + chr5_1:43144615-43144634 Msa0731710:intron 40.0%
GGACAAACAAAAAGCCAAGT+TGG - chr5_1:43144632-43144651 None:intergenic 40.0%
!! AACTAACAAGGCTTTGGACA+AGG + chr5_1:43144675-43144694 Msa0731710:intron 40.0%
! TCAAAGAAGTGTGTTAGGTG+TGG - chr5_1:43144878-43144897 None:intergenic 40.0%
ATGGATCAAAAGGTCTTGCA+AGG + chr5_1:43145017-43145036 Msa0731710:intron 40.0%
TGGATCAAAAGGTCTTGCAA+GGG + chr5_1:43145018-43145037 Msa0731710:intron 40.0%
GTCTTGCAAGGGTTATAACT+TGG + chr5_1:43145029-43145048 Msa0731710:intron 40.0%
GATCAGAAAGCCTATCAAAG+AGG + chr5_1:43145088-43145107 Msa0731710:intron 40.0%
!! CATTCAAGTTGGGGAGAAAA+AGG - chr5_1:43145343-43145362 None:intergenic 40.0%
TTGTCCCTTGCCTTAGTATA+GGG - chr5_1:43145390-43145409 None:intergenic 40.0%
TTTGTCCCTTGCCTTAGTAT+AGG - chr5_1:43145391-43145410 None:intergenic 40.0%
GCAAGGGACAAAGTACAAAA+AGG + chr5_1:43145399-43145418 Msa0731710:intron 40.0%
! GATTCATTTGGCTCAGATTG+GGG + chr5_1:43145556-43145575 Msa0731710:intron 40.0%
! TAGGCTTTATGTGGTCAAGT+AGG + chr5_1:43145605-43145624 Msa0731710:intron 40.0%
ACTACTTGAAGATTCTGCTG+TGG - chr5_1:43146310-43146329 None:intergenic 40.0%
AGTACTAGGAGAGAAAGAGA+TGG + chr5_1:43146327-43146346 Msa0731710:CDS 40.0%
AGTCTCACCAATTGATGAGT+TGG + chr5_1:43146457-43146476 Msa0731710:intron 40.0%
GTGAGATTTCTCAAAACCAC+TGG + chr5_1:43146500-43146519 Msa0731710:intron 40.0%
! TTTTCAATATAGGCCCCAGT+TGG + chr5_1:43146613-43146632 Msa0731710:intron 40.0%
ATGCTATCCAGCAGAGTTTA+TGG + chr5_1:43146752-43146771 Msa0731710:intron 40.0%
!! TTCTAGAATCCTCACATGGA+TGG - chr5_1:43146939-43146958 None:intergenic 40.0%
CATGTTGAGTGACAAAAGGA+AGG - chr5_1:43146975-43146994 None:intergenic 40.0%
ACGTCGTCTAATCCATGTAA+TGG + chr5_1:43147013-43147032 Msa0731710:intron 40.0%
!! GTTTGGGATGGAGGTTTTAT+AGG + chr5_1:43147163-43147182 Msa0731710:intron 40.0%
!! AGGTTTTATAGGCCAGAGAA+GGG + chr5_1:43147174-43147193 Msa0731710:intron 40.0%
GAAATGCAATCTCACCAAGT+GGG + chr5_1:43147592-43147611 Msa0731710:CDS 40.0%
TACATGTATCTCCAATCCGA+TGG - chr5_1:43147625-43147644 None:intergenic 40.0%
GGCAGAAAATGTAGTTAAGG+AGG - chr5_1:43147902-43147921 None:intergenic 40.0%
AGAAGGTGGAGATGAAACCT+TGG + chr5_1:43141574-43141593 Msa0731710:CDS 45.0%
GAAGGTGGAGATGAAACCTT+GGG + chr5_1:43141575-43141594 Msa0731710:CDS 45.0%
TCCTTCTTCTCTGTCGAACT+GGG - chr5_1:43141824-43141843 None:intergenic 45.0%
GACAGAGAAGAAGGAGAAGA+GGG + chr5_1:43141829-43141848 Msa0731710:intron 45.0%
AGAAGAAAAGATGGAGGCAG+GGG + chr5_1:43141854-43141873 Msa0731710:intron 45.0%
GTGACGTGGCATGTGTTTAA+TGG - chr5_1:43141966-43141985 None:intergenic 45.0%
AATTACAGGGACAAGATGGG+AGG + chr5_1:43142044-43142063 Msa0731710:intron 45.0%
! ATGGGAGGATTAGTAAGCTC+AGG + chr5_1:43142059-43142078 Msa0731710:intron 45.0%
! TGGGAGGATTAGTAAGCTCA+GGG + chr5_1:43142060-43142079 Msa0731710:intron 45.0%
GGACTCTGCCCTTATATACT+TGG + chr5_1:43142249-43142268 Msa0731710:intron 45.0%
TTAGTGTCTGTGTCGTGTAG+CGG + chr5_1:43142387-43142406 Msa0731710:intron 45.0%
ATTGTAATCGGGTGGCACTT+TGG + chr5_1:43142496-43142515 Msa0731710:intron 45.0%
AATGTGTGGTCCAGATGCAA+TGG - chr5_1:43142541-43142560 None:intergenic 45.0%
GCAATGACAATGGCAATGTG+TGG - chr5_1:43142555-43142574 None:intergenic 45.0%
TGGTCCAGATGCAATGACAA+TGG - chr5_1:43142565-43142584 None:intergenic 45.0%
TTCCCATTGTAATCCCACTG+CGG + chr5_1:43142658-43142677 Msa0731710:intron 45.0%
! TGAGCATAGCTCAGTTGGTA+TGG - chr5_1:43143116-43143135 None:intergenic 45.0%
AGACATCAAGGATCTTGGCA+TGG - chr5_1:43143887-43143906 None:intergenic 45.0%
TGGCGTAGGTACAAAAACAC+AGG - chr5_1:43144057-43144076 None:intergenic 45.0%
CGCAAGATACGCTAATAGTG+TGG + chr5_1:43144081-43144100 Msa0731710:intron 45.0%
TGGTAAGTCGGCCTATAATC+TGG + chr5_1:43144101-43144120 Msa0731710:intron 45.0%
AAGCCCATTGGCCAGATTAT+AGG - chr5_1:43144115-43144134 None:intergenic 45.0%
TATAAGCGTAGAAGCTCCAG+AGG - chr5_1:43144192-43144211 None:intergenic 45.0%
GAAGAAACACGCTATTAGCG+TGG - chr5_1:43144222-43144241 None:intergenic 45.0%
CTTCATCACGCTAATAGCGT+AGG + chr5_1:43144394-43144413 Msa0731710:intron 45.0%
! GTTTGAATCTAGAGTAGCGG+AGG - chr5_1:43144782-43144801 None:intergenic 45.0%
TGCAAGGGTTATAACTTGGC+CGG + chr5_1:43145033-43145052 Msa0731710:intron 45.0%
!! TCAAGTTGGGGAGAAAAAGG+AGG - chr5_1:43145340-43145359 None:intergenic 45.0%
TGTTCCCCTATACTAAGGCA+AGG + chr5_1:43145382-43145401 Msa0731710:intron 45.0%
GTTCCCCTATACTAAGGCAA+GGG + chr5_1:43145383-43145402 Msa0731710:intron 45.0%
TGTCCCTTGCCTTAGTATAG+GGG - chr5_1:43145389-43145408 None:intergenic 45.0%
! TCTCACAGGTAGGCTTTATG+TGG + chr5_1:43145596-43145615 Msa0731710:intron 45.0%
! AAAGCGTAAGGCCAAGGTTT+TGG - chr5_1:43145893-43145912 None:intergenic 45.0%
!! CACCTGCTTTTGCTCAAACA+TGG + chr5_1:43145937-43145956 Msa0731710:intron 45.0%
AGCCATGTTTGAGCAAAAGC+AGG - chr5_1:43145942-43145961 None:intergenic 45.0%
TTTGCTCAAACATGGCTCCA+TGG + chr5_1:43145945-43145964 Msa0731710:intron 45.0%
ACTAGGAGAGAAAGAGATGG+AGG + chr5_1:43146330-43146349 Msa0731710:CDS 45.0%
TCAGAGAAGTTAGAAGCCTG+CGG - chr5_1:43146375-43146394 None:intergenic 45.0%
CTACTTCTCCTTACTTGCAG+AGG + chr5_1:43146427-43146446 Msa0731710:intron 45.0%
CTCATCAATTGGTGAGACTG+TGG - chr5_1:43146456-43146475 None:intergenic 45.0%
! AATCTCACCCAGTTTGAGGT+AGG - chr5_1:43146488-43146507 None:intergenic 45.0%
GAGAAATCTCACCCAGTTTG+AGG - chr5_1:43146492-43146511 None:intergenic 45.0%
CCTCACATGGATGGTTGAAT+AGG - chr5_1:43146930-43146949 None:intergenic 45.0%
CCTATTCAACCATCCATGTG+AGG + chr5_1:43146927-43146946 Msa0731710:intron 45.0%
! TAAGGATGTGTTTGGGATGG+AGG + chr5_1:43147154-43147173 Msa0731710:intron 45.0%
!! GAGGTTTTATAGGCCAGAGA+AGG + chr5_1:43147173-43147192 Msa0731710:intron 45.0%
TACCATGCAGACTTGAAGCA+AGG + chr5_1:43147563-43147582 Msa0731710:CDS 45.0%
ACCATGCAGACTTGAAGCAA+GGG + chr5_1:43147564-43147583 Msa0731710:CDS 45.0%
GGAAATGCAATCTCACCAAG+TGG + chr5_1:43147591-43147610 Msa0731710:CDS 45.0%
GATAGGAGATTCAGTGGGAG+AGG + chr5_1:43141529-43141548 Msa0731710:CDS 50.0%
! GATTCTGGTGTTGGAGAAGG+TGG + chr5_1:43141560-43141579 Msa0731710:CDS 50.0%
GGAGATGAAACCTTGGGAGA+TGG + chr5_1:43141581-43141600 Msa0731710:CDS 50.0%
TGAAACCTTGGGAGATGGTG+AGG + chr5_1:43141586-43141605 Msa0731710:CDS 50.0%
AACATCCTCACCATCTCCCA+AGG - chr5_1:43141594-43141613 None:intergenic 50.0%
TTGGGAGATGGTGAGGATGT+TGG + chr5_1:43141593-43141612 Msa0731710:CDS 50.0%
!!! GGATGATTTTGGTGGTGTGG+TGG + chr5_1:43141625-43141644 Msa0731710:CDS 50.0%
!!! TGATTTTGGTGGTGTGGTGG+TGG + chr5_1:43141628-43141647 Msa0731710:CDS 50.0%
!!! GGTGTTGCTGGTGAAGCTTT+TGG + chr5_1:43141692-43141711 Msa0731710:CDS 50.0%
! TGCTGGTGAAGCTTTTGGTG+CGG + chr5_1:43141697-43141716 Msa0731710:CDS 50.0%
ACCCAGTTCGACAGAGAAGA+AGG + chr5_1:43141820-43141839 Msa0731710:intron 50.0%
CTCCTTCTTCTCTGTCGAAC+TGG - chr5_1:43141825-43141844 None:intergenic 50.0%
CGACAGAGAAGAAGGAGAAG+AGG + chr5_1:43141828-43141847 Msa0731710:intron 50.0%
GTGGAGGGTAATTAGTGACG+TGG - chr5_1:43141980-43141999 None:intergenic 50.0%
CTCCGCAGTGGGATTACAAT+GGG - chr5_1:43142663-43142682 None:intergenic 50.0%
ACTCCGCAGTGGGATTACAA+TGG - chr5_1:43142664-43142683 None:intergenic 50.0%
GCAATGTTTGACTCCGCAGT+GGG - chr5_1:43142674-43142693 None:intergenic 50.0%
TGCAATGTTTGACTCCGCAG+TGG - chr5_1:43142675-43142694 None:intergenic 50.0%
GTATCTTGCGCTATTGGCGT+AGG - chr5_1:43144071-43144090 None:intergenic 50.0%
TCGGCCTATAATCTGGCCAA+TGG + chr5_1:43144108-43144127 Msa0731710:intron 50.0%
CGGCCTATAATCTGGCCAAT+GGG + chr5_1:43144109-43144128 Msa0731710:intron 50.0%
GTAGCTGAAGCGTAGAAGCA+GGG - chr5_1:43144155-43144174 None:intergenic 50.0%
CTTCAGCTACGCTAATAGCG+TGG + chr5_1:43144165-43144184 Msa0731710:intron 50.0%
ATACGCCATTAGCGTACCTG+GGG - chr5_1:43144354-43144373 None:intergenic 50.0%
GATACGCCATTAGCGTACCT+GGG - chr5_1:43144355-43144374 None:intergenic 50.0%
AGATACGCCATTAGCGTACC+TGG - chr5_1:43144356-43144375 None:intergenic 50.0%
ATGGCGTATCTCTCTGACCT+TGG + chr5_1:43144365-43144384 Msa0731710:intron 50.0%
TGGCGTATCTCTCTGACCTT+GGG + chr5_1:43144366-43144385 Msa0731710:intron 50.0%
GCGTGATGAAGAAATGCCCA+AGG - chr5_1:43144385-43144404 None:intergenic 50.0%
GCAAGGGTTATAACTTGGCC+GGG + chr5_1:43145034-43145053 Msa0731710:intron 50.0%
CAGATACTCGCTCTTCTCAC+AGG + chr5_1:43145582-43145601 Msa0731710:intron 50.0%
TACTCGCTCTTCTCACAGGT+AGG + chr5_1:43145586-43145605 Msa0731710:intron 50.0%
! TGTGAGAAAGCGTAAGGCCA+AGG - chr5_1:43145899-43145918 None:intergenic 50.0%
TTGGCTGAGAAATGCAGCTG+AGG + chr5_1:43146281-43146300 Msa0731710:intron 50.0%
!! ATGGAGGTGTTGTTCCAGAG+TGG + chr5_1:43146346-43146365 Msa0731710:CDS 50.0%
TGTGGATGCCTCTGCAAGTA+AGG - chr5_1:43146438-43146457 None:intergenic 50.0%
GGCGTGTCCAACTCATCAAT+TGG - chr5_1:43146467-43146486 None:intergenic 50.0%
AGCTCATCACTTCCCTTCTC+TGG - chr5_1:43147189-43147208 None:intergenic 50.0%
TCCCTTGCTTCAAGTCTGCA+TGG - chr5_1:43147568-43147587 None:intergenic 50.0%
CAGACTTGAAGCAAGGGATG+TGG + chr5_1:43147570-43147589 Msa0731710:CDS 50.0%
CCAAGTGGGATGAAGACCAT+CGG + chr5_1:43147606-43147625 Msa0731710:CDS 50.0%
TGGGATGAAGACCATCGGAT+TGG + chr5_1:43147611-43147630 Msa0731710:CDS 50.0%
AGGAGATTCAGTGGGAGAGG+TGG + chr5_1:43141532-43141551 Msa0731710:CDS 55.0%
TTCAGTGGGAGAGGTGGATG+CGG + chr5_1:43141538-43141557 Msa0731710:CDS 55.0%
GTGGATGCGGATTCTGGTGT+TGG + chr5_1:43141551-43141570 Msa0731710:CDS 55.0%
! GCGGATTCTGGTGTTGGAGA+AGG + chr5_1:43141557-43141576 Msa0731710:CDS 55.0%
GGAGATGGTGAGGATGTTGG+TGG + chr5_1:43141596-43141615 Msa0731710:CDS 55.0%
!! TGGTGAGGATGTTGGTGGTG+TGG + chr5_1:43141601-43141620 Msa0731710:CDS 55.0%
!! TGAGGATGTTGGTGGTGTGG+CGG + chr5_1:43141604-43141623 Msa0731710:CDS 55.0%
!!! GGTGGTGTGGCGGATGATTT+TGG + chr5_1:43141614-43141633 Msa0731710:CDS 55.0%
!!! GGTGTGGCGGATGATTTTGG+TGG + chr5_1:43141617-43141636 Msa0731710:CDS 55.0%
!!! GGCGGATGATTTTGGTGGTG+TGG + chr5_1:43141622-43141641 Msa0731710:CDS 55.0%
!! TGGTGAAGCTTTTGGTGCGG+CGG + chr5_1:43141700-43141719 Msa0731710:CDS 55.0%
AGATGGAGGCAGGGGCAAAA+CGG + chr5_1:43141862-43141881 Msa0731710:intron 55.0%
GCCGAGCCCAGGTTCATTAA+GGG + chr5_1:43141892-43141911 Msa0731710:intron 55.0%
GCCCTTAATGAACCTGGGCT+CGG - chr5_1:43141896-43141915 None:intergenic 55.0%
TGTCAGGACACGTCAGCTGT+GGG - chr5_1:43141938-43141957 None:intergenic 55.0%
GTGGAGTTGACGATGTCGTG+CGG + chr5_1:43142409-43142428 Msa0731710:intron 55.0%
TTGACGATGTCGTGCGGTGA+AGG + chr5_1:43142415-43142434 Msa0731710:intron 55.0%
! TGTCACCGTGCCATTGCATC+TGG + chr5_1:43142528-43142547 Msa0731710:intron 55.0%
GTGGTCCAGATGCAATGGCA+CGG - chr5_1:43142536-43142555 None:intergenic 55.0%
GTTGGTCGGAGTTTGAACCC+CGG + chr5_1:43143067-43143086 Msa0731710:intron 55.0%
CCTCGTGAGCATAGCTCAGT+TGG - chr5_1:43143121-43143140 None:intergenic 55.0%
CCAACTGAGCTATGCTCACG+AGG + chr5_1:43143118-43143137 Msa0731710:intron 55.0%
!! CGATGTCGCTTTGGACACGA+AGG - chr5_1:43143454-43143473 None:intergenic 55.0%
TGAAGCGTAGAAGCAGGGCA+AGG - chr5_1:43144150-43144169 None:intergenic 55.0%
CGTAGCTGAAGCGTAGAAGC+AGG - chr5_1:43144156-43144175 None:intergenic 55.0%
ACGCTAATAGCGTGGTCCTC+TGG + chr5_1:43144173-43144192 Msa0731710:intron 55.0%
TGCGCCTATGGCGTATCTCT+CGG + chr5_1:43144261-43144280 Msa0731710:intron 55.0%
TGGACACGCCTACCTCAAAC+TGG + chr5_1:43146477-43146496 Msa0731710:intron 55.0%
GGACACGCCTACCTCAAACT+GGG + chr5_1:43146478-43146497 Msa0731710:intron 55.0%
!! ACCACTGGTTTGGCCCAGTT+TGG + chr5_1:43146515-43146534 Msa0731710:intron 55.0%
TCCAAACTGGGCCAAACCAG+TGG - chr5_1:43146519-43146538 None:intergenic 55.0%
CCGATGGTCTTCATCCCACT+TGG - chr5_1:43147609-43147628 None:intergenic 55.0%
ATGGTAGGAGCAACGGGAGC+GGG + chr5_1:43141497-43141516 Msa0731710:CDS 60.0%
GGAGCGGGAGGAGATTCGAT+AGG + chr5_1:43141512-43141531 Msa0731710:CDS 60.0%
GGAGAGGTGGATGCGGATTC+TGG + chr5_1:43141545-43141564 Msa0731710:CDS 60.0%
!! GGTGGTGTGGTGGTGGAAGA+AGG + chr5_1:43141635-43141654 Msa0731710:CDS 60.0%
!! GGTGTGGTGGTGGAAGAAGG+AGG + chr5_1:43141638-43141657 Msa0731710:CDS 60.0%
!! GGTGGTGGAAGAAGGAGGAG+TGG + chr5_1:43141643-43141662 Msa0731710:CDS 60.0%
GGAAGAAGGAGGAGTGGCAG+TGG + chr5_1:43141649-43141668 Msa0731710:CDS 60.0%
GGAGGAGTGGCAGTGGCTTT+AGG + chr5_1:43141656-43141675 Msa0731710:CDS 60.0%
!! GTGGCAGTGGCTTTAGGTGC+AGG + chr5_1:43141662-43141681 Msa0731710:CDS 60.0%
!! TGAAGCTTTTGGTGCGGCGG+TGG + chr5_1:43141703-43141722 Msa0731710:CDS 60.0%
!! GAAGCTTTTGGTGCGGCGGT+GGG + chr5_1:43141704-43141723 Msa0731710:CDS 60.0%
CGCCGAGCCCAGGTTCATTA+AGG + chr5_1:43141891-43141910 Msa0731710:intron 60.0%
GTCAGGACACGTCAGCTGTG+GGG - chr5_1:43141937-43141956 None:intergenic 60.0%
GTGTCAGGACACGTCAGCTG+TGG - chr5_1:43141939-43141958 None:intergenic 60.0%
GTGTCTGTGTCGTGTAGCGG+TGG + chr5_1:43142390-43142409 Msa0731710:intron 60.0%
CCAACGTGGCACAAGCCCAT+TGG - chr5_1:43144127-43144146 None:intergenic 60.0%
! CCAATGGGCTTGTGCCACGT+TGG + chr5_1:43144124-43144143 Msa0731710:intron 60.0%
CTTCATGACAGCCACGCTCC+AGG + chr5_1:43144238-43144257 Msa0731710:intron 60.0%
AGATACGCCATAGGCGCACC+TGG - chr5_1:43144259-43144278 None:intergenic 60.0%
GCGCCTATGGCGTATCTCTC+GGG + chr5_1:43144262-43144281 Msa0731710:intron 60.0%
GCTCCCGAGAGATACGCCAT+AGG - chr5_1:43144268-43144287 None:intergenic 60.0%
TGCTCCAAAACCTACGCCCC+AGG + chr5_1:43144335-43144354 Msa0731710:intron 60.0%
! CGTACCTGGGGCGTAGGTTT+TGG - chr5_1:43144342-43144361 None:intergenic 60.0%
CATTAGCGTACCTGGGGCGT+AGG - chr5_1:43144348-43144367 None:intergenic 60.0%
CTACGCCCCAGGTACGCTAA+TGG + chr5_1:43144346-43144365 Msa0731710:intron 60.0%
! GCTTTAGGTGCAGGCGCTGC+TGG + chr5_1:43141671-43141690 Msa0731710:CDS 65.0%
!! TTTTGGTGCGGCGGTGGGTG+AGG + chr5_1:43141709-43141728 Msa0731710:CDS 65.0%
AGGACACGTCAGCTGTGGGG+CGG - chr5_1:43141934-43141953 None:intergenic 65.0%
GAAGCAGGGCAAGGCCAACG+TGG - chr5_1:43144141-43144160 None:intergenic 65.0%
TGTTCCAGAGTGGTCGCCGC+AGG + chr5_1:43146356-43146375 Msa0731710:CDS 65.0%
GTAGGAGCAACGGGAGCGGG+AGG + chr5_1:43141500-43141519 Msa0731710:CDS 70.0%
!! GCAGGCGCTGCTGGTGTTGC+TGG + chr5_1:43141680-43141699 Msa0731710:CDS 70.0%
GCGGTGGGTGAGGTGGAAGG+TGG + chr5_1:43141719-43141738 Msa0731710:intron 70.0%
ACGGTCATTGCGCCGAGCCC+AGG + chr5_1:43141881-43141900 Msa0731710:intron 70.0%
GACACGTCAGCTGTGGGGCG+GGG - chr5_1:43141932-43141951 None:intergenic 70.0%
GGACACGTCAGCTGTGGGGC+GGG - chr5_1:43141933-43141952 None:intergenic 70.0%
CCATAGGCGCACCTGGAGCG+TGG - chr5_1:43144252-43144271 None:intergenic 70.0%
CCACGCTCCAGGTGCGCCTA+TGG + chr5_1:43144249-43144268 Msa0731710:intron 70.0%
GAAGCCTGCGGCGACCACTC+TGG - chr5_1:43146363-43146382 None:intergenic 70.0%
TGGTGCGGCGGTGGGTGAGG+TGG + chr5_1:43141712-43141731 Msa0731710:CDS 75.0%
GCGGCGGTGGGTGAGGTGGA+AGG + chr5_1:43141716-43141735 Msa0731710:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 43141497 43147985 43141497 ID=Msa0731710;Name=Msa0731710
chr5_1 mRNA 43141497 43147985 43141497 ID=Msa0731710-mRNA-1;Parent=Msa0731710;Name=Msa0731710-mRNA-1;_AED=0.23;_eAED=0.40;_QI=0|0|0.33|0.66|1|1|3|219|192
chr5_1 exon 43141497 43141737 43141497 ID=Msa0731710-mRNA-1:exon:12331;Parent=Msa0731710-mRNA-1
chr5_1 exon 43146298 43146417 43146298 ID=Msa0731710-mRNA-1:exon:12332;Parent=Msa0731710-mRNA-1
chr5_1 exon 43147549 43147985 43147549 ID=Msa0731710-mRNA-1:exon:12333;Parent=Msa0731710-mRNA-1
chr5_1 CDS 43141497 43141737 43141497 ID=Msa0731710-mRNA-1:cds;Parent=Msa0731710-mRNA-1
chr5_1 CDS 43146298 43146417 43146298 ID=Msa0731710-mRNA-1:cds;Parent=Msa0731710-mRNA-1
chr5_1 CDS 43147549 43147766 43147549 ID=Msa0731710-mRNA-1:cds;Parent=Msa0731710-mRNA-1
chr5_1 three_prime_UTR 43147767 43147985 43147767 ID=Msa0731710-mRNA-1:three_prime_utr;Parent=Msa0731710-mRNA-1
Gene Sequence

>Msa0731710

ATGGTAGGAGCAACGGGAGCGGGAGGAGATTCGATAGGAGATTCAGTGGGAGAGGTGGATGCGGATTCTGGTGTTGGAGAAGGTGGAGATGAAACCTTGGGAGATGGTGAGGATGTTGGTGGTGTGGCGGATGATTTTGGTGGTGTGGTGGTGGAAGAAGGAGGAGTGGCAGTGGCTTTAGGTGCAGGCGCTGCTGGTGTTGCTGGTGAAGCTTTTGGTGCGGCGGTGGGTGAGGTGGAAGCTGAGGATTCCACAGCAGAATCTTCAAGTAGTACTAGGAGAGAAAGAGATGGAGGTGTTGTTCCAGAGTGGTCGCCGCAGGCTTCTAACTTCTCTGATCAATATGTAGATGATGAAAATGATAATACACATATATACCATGCAGACTTGAAGCAAGGGATGTGGAAATGCAATCTCACCAAGTGGGATGAAGACCATCGGATTGGAGATACATGTACTCATTTTGGGAAAGTATTGACGAATGATTATATTGCTGATTTCCAATGTGTTTGGAAATTTCAGTACATTGGGGGCAGTTTCATATCTGCATTCCCTTTTGCTTCTTGTACAAATGTGTAG

Protein sequence

>Msa0731710

MVGATGAGGDSIGDSVGEVDADSGVGEGGDETLGDGEDVGGVADDFGGVVVEEGGVAVALGAGAAGVAGEAFGAAVGEVEAEDSTAESSSSTRRERDGGVVPEWSPQASNFSDQYVDDENDNTHIYHADLKQGMWKCNLTKWDEDHRIGDTCTHFGKVLTNDYIADFQCVWKFQYIGGSFISAFPFASCTNV*