Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103860 | sp|P93604|LRK10_WHEAT | 32.927 | 82 | 55 | 0 | 121 | 202 | 277 | 358 | 5.54e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103860 | A0A072VEV2 | 64.202 | 257 | 14 | 2 | 25 | 203 | 25 | 281 | 2.12e-98 | 306 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017320 | Msa0103860 | 0.805406 | 1.355722e-49 | -8.615850e-47 |
| Msa0051210 | Msa0103860 | 0.809911 | 1.497588e-50 | -8.615850e-47 |
| Msa0051450 | Msa0103860 | 0.818500 | 1.897631e-52 | -8.615850e-47 |
| Msa0101830 | Msa0103860 | 0.837010 | 6.687468e-57 | -8.615850e-47 |
| Msa0103860 | Msa0124550 | 0.804480 | 2.116835e-49 | -8.615850e-47 |
| Msa0103860 | Msa0130520 | 0.812126 | 4.960054e-51 | -8.615850e-47 |
| Msa0103860 | Msa0135410 | 0.818779 | 1.640759e-52 | -8.615850e-47 |
| Msa0103860 | Msa0142280 | 0.816034 | 6.809493e-52 | -8.615850e-47 |
| Msa0103860 | Msa0155340 | 0.810192 | 1.302519e-50 | -8.615850e-47 |
| Msa0103860 | Msa0175050 | 0.803379 | 3.584935e-49 | -8.615850e-47 |
| Msa0103860 | Msa0225470 | 0.817304 | 3.534276e-52 | -8.615850e-47 |
| Msa0103860 | Msa0244140 | 0.813502 | 2.477997e-51 | -8.615850e-47 |
| Msa0103860 | Msa0244190 | 0.827917 | 1.200545e-54 | -8.615850e-47 |
| Msa0103860 | Msa0371950 | 0.801455 | 8.932723e-49 | -8.615850e-47 |
| Msa0103860 | Msa0438040 | 0.817546 | 3.117257e-52 | -8.615850e-47 |
| Msa0103860 | Msa0530650 | 0.811505 | 6.769142e-51 | -8.615850e-47 |
| Msa0103860 | Msa0534410 | 0.820351 | 7.182073e-53 | -8.615850e-47 |
| Msa0103860 | Msa0561250 | 0.804862 | 1.762129e-49 | -8.615850e-47 |
| Msa0103860 | Msa0587190 | 0.821028 | 5.018778e-53 | -8.615850e-47 |
| Msa0103860 | Msa0626990 | 0.803568 | 3.275508e-49 | -8.615850e-47 |
| Msa0103860 | Msa0627350 | 0.808027 | 3.789058e-50 | -8.615850e-47 |
| Msa0103860 | Msa0679550 | 0.831107 | 2.013232e-55 | -8.615850e-47 |
| Msa0103860 | Msa0711210 | 0.803906 | 2.787550e-49 | -8.615850e-47 |
| Msa0103860 | Msa0731180 | 0.806272 | 8.917647e-50 | -8.615850e-47 |
| Msa0103860 | Msa0771580 | 0.803808 | 2.921856e-49 | -8.615850e-47 |
| Msa0103860 | Msa0805920 | 0.810062 | 1.389350e-50 | -8.615850e-47 |
| Msa0103860 | Msa0823440 | 0.803655 | 3.142215e-49 | -8.615850e-47 |
| Msa0103860 | Msa1023300 | 0.800173 | 1.631730e-48 | -8.615850e-47 |
| Msa0103860 | Msa1026640 | 0.818645 | 1.759370e-52 | -8.615850e-47 |
| Msa0103860 | Msa1087990 | 0.816216 | 6.198329e-52 | -8.615850e-47 |
| Msa0103860 | Msa1150810 | 0.804220 | 2.397955e-49 | -8.615850e-47 |
| Msa0103860 | Msa1250730 | 0.802175 | 6.354976e-49 | -8.615850e-47 |
| Msa0103860 | Msa1270730 | 0.808274 | 3.356984e-50 | -8.615850e-47 |
| Msa0103860 | Msa1287680 | 0.814407 | 1.565299e-51 | -8.615850e-47 |
| Msa0103860 | Msa1322200 | 0.800518 | 1.388440e-48 | -8.615850e-47 |
| Msa0103860 | Msa1335230 | 0.812692 | 3.729915e-51 | -8.615850e-47 |
| Msa0103860 | Msa1339190 | 0.802735 | 4.872542e-49 | -8.615850e-47 |
| Msa0103860 | Msa1377080 | 0.812487 | 4.136806e-51 | -8.615850e-47 |
| Msa0103860 | Msa1423820 | 0.802806 | 4.709677e-49 | -8.615850e-47 |
| Msa0103860 | Msa1463600 | 0.805298 | 1.428469e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103860 | MtrunA17_Chr1g0157871 | 64.202 | 257 | 14 | 2 | 25 | 203 | 25 | 281 | 4.07e-102 | 306 |
| Msa0103860 | MtrunA17_Chr1g0157941 | 54.851 | 268 | 43 | 5 | 13 | 203 | 13 | 279 | 5.17e-84 | 259 |
| Msa0103860 | MtrunA17_Chr1g0157891 | 55.769 | 208 | 14 | 3 | 13 | 142 | 56 | 263 | 1.25e-66 | 205 |
| Msa0103860 | MtrunA17_Chr1g0158391 | 37.943 | 282 | 91 | 8 | 1 | 203 | 1 | 277 | 4.55e-47 | 162 |
| Msa0103860 | MtrunA17_Chr1g0158711 | 37.262 | 263 | 81 | 7 | 23 | 203 | 21 | 281 | 8.75e-46 | 159 |
| Msa0103860 | MtrunA17_Chr6g0467681 | 37.282 | 287 | 80 | 10 | 5 | 203 | 10 | 284 | 3.16e-41 | 146 |
| Msa0103860 | MtrunA17_Chr6g0467661 | 36.934 | 287 | 81 | 10 | 5 | 203 | 10 | 284 | 3.29e-40 | 144 |
| Msa0103860 | MtrunA17_Chr1g0158471 | 34.932 | 292 | 95 | 9 | 3 | 203 | 11 | 298 | 1.57e-39 | 142 |
| Msa0103860 | MtrunA17_Chr1g0158511 | 34.828 | 290 | 98 | 8 | 3 | 203 | 11 | 298 | 3.28e-39 | 141 |
| Msa0103860 | MtrunA17_Chr1g0158361 | 31.034 | 290 | 90 | 6 | 19 | 200 | 22 | 309 | 6.91e-38 | 133 |
| Msa0103860 | MtrunA17_Chr6g0467641 | 43.721 | 215 | 94 | 8 | 5 | 203 | 10 | 213 | 1.05e-37 | 136 |
| Msa0103860 | MtrunA17_Chr3g0088341 | 70.886 | 79 | 23 | 0 | 125 | 203 | 220 | 298 | 6.33e-34 | 126 |
| Msa0103860 | MtrunA17_Chr1g0158531 | 63.953 | 86 | 31 | 0 | 118 | 203 | 225 | 310 | 1.06e-32 | 123 |
| Msa0103860 | MtrunA17_Chr1g0158651 | 47.761 | 134 | 55 | 4 | 70 | 203 | 209 | 327 | 5.79e-32 | 121 |
| Msa0103860 | MtrunA17_Chr1g0158311 | 59.302 | 86 | 35 | 0 | 118 | 203 | 223 | 308 | 6.69e-30 | 115 |
| Msa0103860 | MtrunA17_Chr1g0158181 | 56.842 | 95 | 41 | 0 | 109 | 203 | 252 | 346 | 9.75e-29 | 112 |
| Msa0103860 | MtrunA17_Chr1g0157781 | 34.894 | 235 | 85 | 7 | 32 | 203 | 94 | 323 | 1.18e-27 | 109 |
| Msa0103860 | MtrunA17_Chr1g0158051 | 63.636 | 77 | 28 | 0 | 127 | 203 | 248 | 324 | 1.26e-27 | 109 |
| Msa0103860 | MtrunA17_Chr1g0157971 | 60.000 | 85 | 30 | 1 | 119 | 203 | 242 | 322 | 1.85e-27 | 108 |
| Msa0103860 | MtrunA17_Chr1g0157801 | 60.000 | 85 | 30 | 2 | 119 | 203 | 238 | 318 | 1.25e-26 | 106 |
| Msa0103860 | MtrunA17_Chr1g0158101 | 57.647 | 85 | 32 | 1 | 119 | 203 | 248 | 328 | 1.01e-25 | 103 |
| Msa0103860 | MtrunA17_Chr1g0158611 | 60.563 | 71 | 28 | 0 | 133 | 203 | 1 | 71 | 4.62e-25 | 100 |
| Msa0103860 | MtrunA17_Chr6g0467701 | 83.019 | 53 | 9 | 0 | 151 | 203 | 2 | 54 | 1.88e-24 | 98.2 |
| Msa0103860 | MtrunA17_Chr1g0158321 | 79.245 | 53 | 11 | 0 | 151 | 203 | 2 | 54 | 1.09e-22 | 93.6 |
| Msa0103860 | MtrunA17_Chr1g0160581 | 48.913 | 92 | 47 | 0 | 112 | 203 | 234 | 325 | 2.33e-22 | 94.0 |
| Msa0103860 | MtrunA17_Chr1g0160731 | 50.000 | 90 | 45 | 0 | 114 | 203 | 228 | 317 | 8.48e-22 | 92.4 |
| Msa0103860 | MtrunA17_Chr1g0160771 | 49.438 | 89 | 45 | 0 | 115 | 203 | 233 | 321 | 1.09e-21 | 92.0 |
| Msa0103860 | MtrunA17_Chr1g0158771 | 41.228 | 114 | 56 | 2 | 94 | 203 | 203 | 309 | 4.86e-19 | 84.3 |
| Msa0103860 | MtrunA17_Chr1g0160681 | 46.914 | 81 | 43 | 0 | 123 | 203 | 5 | 85 | 1.69e-17 | 79.3 |
| Msa0103860 | MtrunA17_Chr4g0037001 | 49.383 | 81 | 40 | 1 | 123 | 203 | 249 | 328 | 1.14e-16 | 77.8 |
| Msa0103860 | MtrunA17_Chr6g0483791 | 40.816 | 98 | 53 | 2 | 108 | 202 | 294 | 389 | 1.18e-12 | 65.9 |
| Msa0103860 | MtrunA17_Chr1g0209481 | 35.484 | 93 | 55 | 1 | 115 | 202 | 135 | 227 | 3.77e-12 | 64.3 |
| Msa0103860 | MtrunA17_Chr8g0391231 | 39.604 | 101 | 50 | 3 | 111 | 202 | 256 | 354 | 5.07e-12 | 63.9 |
| Msa0103860 | MtrunA17_Chr1g0209501 | 36.145 | 83 | 50 | 1 | 120 | 202 | 249 | 328 | 1.21e-11 | 63.2 |
| Msa0103860 | MtrunA17_Chr7g0232441 | 35.632 | 87 | 49 | 2 | 124 | 203 | 257 | 343 | 1.41e-11 | 62.8 |
| Msa0103860 | MtrunA17_Chr1g0209511 | 36.264 | 91 | 57 | 1 | 112 | 202 | 247 | 336 | 1.64e-11 | 62.8 |
| Msa0103860 | MtrunA17_Chr7g0250741 | 51.020 | 49 | 24 | 0 | 154 | 202 | 505 | 553 | 1.64e-11 | 62.8 |
| Msa0103860 | MtrunA17_Chr4g0022331 | 33.333 | 108 | 57 | 3 | 108 | 202 | 446 | 551 | 2.25e-11 | 62.4 |
| Msa0103860 | MtrunA17_Chr6g0483981 | 40.698 | 86 | 39 | 2 | 127 | 202 | 204 | 287 | 2.37e-11 | 62.0 |
| Msa0103860 | MtrunA17_Chr1g0212821 | 35.484 | 93 | 48 | 1 | 122 | 202 | 9 | 101 | 4.62e-11 | 61.2 |
| Msa0103860 | MtrunA17_Chr1g0160761 | 33.708 | 89 | 52 | 2 | 116 | 202 | 271 | 354 | 6.51e-11 | 60.8 |
| Msa0103860 | MtrunA17_Chr1g0158761 | 42.424 | 66 | 35 | 1 | 140 | 202 | 288 | 353 | 6.65e-11 | 60.8 |
| Msa0103860 | MtrunA17_Chr6g0484031 | 34.722 | 144 | 74 | 6 | 70 | 202 | 108 | 242 | 6.92e-11 | 60.8 |
| Msa0103860 | MtrunA17_Chr7g0251081 | 36.111 | 108 | 51 | 4 | 113 | 202 | 37 | 144 | 7.88e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 26 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTGTTGTTACTAAAATAA+TGG | 0.242903 | 1_3:-11356275 | None:intergenic |
| CTTGTACACCAGGGTTTCTT+TGG | 0.261545 | 1_3:-11356033 | None:intergenic |
| TAAGGATCAGTGGCATATAT+TGG | 0.357285 | 1_3:-11356070 | None:intergenic |
| GCTCATGGAGCTGTCTATAA+AGG | 0.364308 | 1_3:+11356590 | Msa0103860:CDS |
| CTAGCAGTAAACCTTGTAAA+TGG | 0.417335 | 1_3:+11355719 | Msa0103860:CDS |
| TGAGTTTCTTCTTTGATTTG+TGG | 0.418600 | 1_3:-11356249 | None:intergenic |
| AATTGTTGGTTCAACTATGC+TGG | 0.452324 | 1_3:+11356394 | Msa0103860:CDS |
| GAGTACACCATCTGAAAAGC+TGG | 0.470583 | 1_3:+11356008 | Msa0103860:CDS |
| TATTGTTCTGACCATTTACA+AGG | 0.484691 | 1_3:-11355730 | None:intergenic |
| TTGGAAGAATCTGATTGAAA+AGG | 0.494532 | 1_3:-11355950 | None:intergenic |
| TCTGCATAAGAAAATCTAGT+TGG | 0.512760 | 1_3:-11356521 | None:intergenic |
| CTTGAACAAGATAAACGAAA+GGG | 0.516549 | 1_3:-11355773 | None:intergenic |
| GAATTTGCAGGAGCAATTGT+TGG | 0.534993 | 1_3:+11356380 | Msa0103860:intron |
| GATCAATTCAAAGAAAAGCT+TGG | 0.540295 | 1_3:+11356560 | Msa0103860:CDS |
| AAATTGACGACACTCTCATA+AGG | 0.541207 | 1_3:-11356088 | None:intergenic |
| TTTCAATCAGATTCTTCCAA+CGG | 0.548952 | 1_3:+11355953 | Msa0103860:CDS |
| AAGCTTGGCGAAGGAGCTCA+TGG | 0.549645 | 1_3:+11356575 | Msa0103860:CDS |
| TTCAAAGAAAAGCTTGGCGA+AGG | 0.584892 | 1_3:+11356566 | Msa0103860:CDS |
| AGCTGGGACCAAAGAAACCC+TGG | 0.590213 | 1_3:+11356025 | Msa0103860:CDS |
| GACAACATATCTTGTACACC+AGG | 0.593647 | 1_3:-11356043 | None:intergenic |
| TAAACGAAAGGGGCATTCAA+CGG | 0.614443 | 1_3:-11355762 | None:intergenic |
| ACTTGAACAAGATAAACGAA+AGG | 0.637824 | 1_3:-11355774 | None:intergenic |
| AGTACACCATCTGAAAAGCT+GGG | 0.647717 | 1_3:+11356009 | Msa0103860:CDS |
| GACACTCTCATAAGGATCAG+TGG | 0.656605 | 1_3:-11356080 | None:intergenic |
| TTGAACAAGATAAACGAAAG+GGG | 0.665988 | 1_3:-11355772 | None:intergenic |
| ACAACATATCTTGTACACCA+GGG | 0.694524 | 1_3:-11356042 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATATATTATATATACCTT+AGG | + | chr1_3:11356303-11356322 | Msa0103860:intron | 15.0% |
| !! | GAATATATTATATATACCTT+AGG | + | chr1_3:11356303-11356322 | Msa0103860:intron | 15.0% |
| !! | TAATTAAATGTTGAATTTGC+AGG | + | chr1_3:11356368-11356387 | Msa0103860:intron | 20.0% |
| !! | TAATTAAATGTTGAATTTGC+AGG | + | chr1_3:11356368-11356387 | Msa0103860:intron | 20.0% |
| !!! | TTTTTTGATACTGGTTTTGA+GGG | - | chr1_3:11355824-11355843 | None:intergenic | 25.0% |
| !!! | TTTTTTTGATACTGGTTTTG+AGG | - | chr1_3:11355825-11355844 | None:intergenic | 25.0% |
| !!! | ACTAGGAATTTTTTTGATAC+TGG | - | chr1_3:11355833-11355852 | None:intergenic | 25.0% |
| !!! | TTTTTTAATTGCTCTTCAGT+TGG | + | chr1_3:11355986-11356005 | Msa0103860:CDS | 25.0% |
| !! | AATGTTTGATAAAGTTTTGC+CGG | + | chr1_3:11356132-11356151 | Msa0103860:intron | 25.0% |
| !! | TCATATACTAAACATTGACT+GGG | - | chr1_3:11356220-11356239 | None:intergenic | 25.0% |
| ! | ATCATATACTAAACATTGAC+TGG | - | chr1_3:11356221-11356240 | None:intergenic | 25.0% |
| !!! | TCCATTATTTTAGTAACAAC+AGG | + | chr1_3:11356274-11356293 | Msa0103860:CDS | 25.0% |
| ! | ACCTGTTGTTACTAAAATAA+TGG | - | chr1_3:11356278-11356297 | None:intergenic | 25.0% |
| !! | GAGACTTGAAAACTTTTTAA+AGG | + | chr1_3:11356481-11356500 | Msa0103860:CDS | 25.0% |
| !!! | TTTTTTGATACTGGTTTTGA+GGG | - | chr1_3:11355824-11355843 | None:intergenic | 25.0% |
| !!! | TTTTTTTGATACTGGTTTTG+AGG | - | chr1_3:11355825-11355844 | None:intergenic | 25.0% |
| !!! | ACTAGGAATTTTTTTGATAC+TGG | - | chr1_3:11355833-11355852 | None:intergenic | 25.0% |
| !!! | TTTTTTAATTGCTCTTCAGT+TGG | + | chr1_3:11355986-11356005 | Msa0103860:CDS | 25.0% |
| !! | AATGTTTGATAAAGTTTTGC+CGG | + | chr1_3:11356132-11356151 | Msa0103860:intron | 25.0% |
| !! | TCATATACTAAACATTGACT+GGG | - | chr1_3:11356220-11356239 | None:intergenic | 25.0% |
| ! | ATCATATACTAAACATTGAC+TGG | - | chr1_3:11356221-11356240 | None:intergenic | 25.0% |
| !!! | TCCATTATTTTAGTAACAAC+AGG | + | chr1_3:11356274-11356293 | Msa0103860:CDS | 25.0% |
| ! | ACCTGTTGTTACTAAAATAA+TGG | - | chr1_3:11356278-11356297 | None:intergenic | 25.0% |
| !! | GAGACTTGAAAACTTTTTAA+AGG | + | chr1_3:11356481-11356500 | Msa0103860:CDS | 25.0% |
| TATTGTTCTGACCATTTACA+AGG | - | chr1_3:11355733-11355752 | None:intergenic | 30.0% | |
| TTGAACAAGATAAACGAAAG+GGG | - | chr1_3:11355775-11355794 | None:intergenic | 30.0% | |
| CTTGAACAAGATAAACGAAA+GGG | - | chr1_3:11355776-11355795 | None:intergenic | 30.0% | |
| ACTTGAACAAGATAAACGAA+AGG | - | chr1_3:11355777-11355796 | None:intergenic | 30.0% | |
| TTGGAAGAATCTGATTGAAA+AGG | - | chr1_3:11355953-11355972 | None:intergenic | 30.0% | |
| TTTCAATCAGATTCTTCCAA+CGG | + | chr1_3:11355953-11355972 | Msa0103860:CDS | 30.0% | |
| !! | TCTCAGGACATTTTGATATA+AGG | + | chr1_3:11356155-11356174 | Msa0103860:intron | 30.0% |
| !! | TGAGTTTCTTCTTTGATTTG+TGG | - | chr1_3:11356252-11356271 | None:intergenic | 30.0% |
| TGGAATAGAAATAGAACCTA+AGG | - | chr1_3:11356322-11356341 | None:intergenic | 30.0% | |
| !!! | ACTATGCTGGTTATTTTGAT+TGG | + | chr1_3:11356407-11356426 | Msa0103860:CDS | 30.0% |
| TCTGCATAAGAAAATCTAGT+TGG | - | chr1_3:11356524-11356543 | None:intergenic | 30.0% | |
| GATCAATTCAAAGAAAAGCT+TGG | + | chr1_3:11356560-11356579 | Msa0103860:CDS | 30.0% | |
| TATTGTTCTGACCATTTACA+AGG | - | chr1_3:11355733-11355752 | None:intergenic | 30.0% | |
| TTGAACAAGATAAACGAAAG+GGG | - | chr1_3:11355775-11355794 | None:intergenic | 30.0% | |
| CTTGAACAAGATAAACGAAA+GGG | - | chr1_3:11355776-11355795 | None:intergenic | 30.0% | |
| ACTTGAACAAGATAAACGAA+AGG | - | chr1_3:11355777-11355796 | None:intergenic | 30.0% | |
| TTGGAAGAATCTGATTGAAA+AGG | - | chr1_3:11355953-11355972 | None:intergenic | 30.0% | |
| TTTCAATCAGATTCTTCCAA+CGG | + | chr1_3:11355953-11355972 | Msa0103860:CDS | 30.0% | |
| !! | TCTCAGGACATTTTGATATA+AGG | + | chr1_3:11356155-11356174 | Msa0103860:intron | 30.0% |
| !! | TGAGTTTCTTCTTTGATTTG+TGG | - | chr1_3:11356252-11356271 | None:intergenic | 30.0% |
| TGGAATAGAAATAGAACCTA+AGG | - | chr1_3:11356322-11356341 | None:intergenic | 30.0% | |
| !!! | ACTATGCTGGTTATTTTGAT+TGG | + | chr1_3:11356407-11356426 | Msa0103860:CDS | 30.0% |
| TCTGCATAAGAAAATCTAGT+TGG | - | chr1_3:11356524-11356543 | None:intergenic | 30.0% | |
| GATCAATTCAAAGAAAAGCT+TGG | + | chr1_3:11356560-11356579 | Msa0103860:CDS | 30.0% | |
| CTAGCAGTAAACCTTGTAAA+TGG | + | chr1_3:11355719-11355738 | Msa0103860:CDS | 35.0% | |
| ! | TGCAATCTATGTTTCTGACT+AGG | - | chr1_3:11355850-11355869 | None:intergenic | 35.0% |
| !! | ACCTAGAAAGACAGTTTTGT+GGG | - | chr1_3:11355898-11355917 | None:intergenic | 35.0% |
| ! | AACCTAGAAAGACAGTTTTG+TGG | - | chr1_3:11355899-11355918 | None:intergenic | 35.0% |
| AAAAAAAGTAACGTTGCCGT+TGG | - | chr1_3:11355972-11355991 | None:intergenic | 35.0% | |
| ACAACATATCTTGTACACCA+GGG | - | chr1_3:11356045-11356064 | None:intergenic | 35.0% | |
| TAAGGATCAGTGGCATATAT+TGG | - | chr1_3:11356073-11356092 | None:intergenic | 35.0% | |
| AAATTGACGACACTCTCATA+AGG | - | chr1_3:11356091-11356110 | None:intergenic | 35.0% | |
| !! | TTATGAGAGTGTCGTCAATT+TGG | + | chr1_3:11356090-11356109 | Msa0103860:intron | 35.0% |
| ATATCAAAATGTCCTGAGAC+CGG | - | chr1_3:11356154-11356173 | None:intergenic | 35.0% | |
| !! | AATTGTTGGTTCAACTATGC+TGG | + | chr1_3:11356394-11356413 | Msa0103860:CDS | 35.0% |
| !! | TTCGAGTTTACGTCCATTTT+AGG | + | chr1_3:11356438-11356457 | Msa0103860:CDS | 35.0% |
| CTAGCAGTAAACCTTGTAAA+TGG | + | chr1_3:11355719-11355738 | Msa0103860:CDS | 35.0% | |
| ! | TGCAATCTATGTTTCTGACT+AGG | - | chr1_3:11355850-11355869 | None:intergenic | 35.0% |
| !! | ACCTAGAAAGACAGTTTTGT+GGG | - | chr1_3:11355898-11355917 | None:intergenic | 35.0% |
| ! | AACCTAGAAAGACAGTTTTG+TGG | - | chr1_3:11355899-11355918 | None:intergenic | 35.0% |
| AAAAAAAGTAACGTTGCCGT+TGG | - | chr1_3:11355972-11355991 | None:intergenic | 35.0% | |
| ACAACATATCTTGTACACCA+GGG | - | chr1_3:11356045-11356064 | None:intergenic | 35.0% | |
| TAAGGATCAGTGGCATATAT+TGG | - | chr1_3:11356073-11356092 | None:intergenic | 35.0% | |
| AAATTGACGACACTCTCATA+AGG | - | chr1_3:11356091-11356110 | None:intergenic | 35.0% | |
| !! | TTATGAGAGTGTCGTCAATT+TGG | + | chr1_3:11356090-11356109 | Msa0103860:intron | 35.0% |
| ATATCAAAATGTCCTGAGAC+CGG | - | chr1_3:11356154-11356173 | None:intergenic | 35.0% | |
| !! | AATTGTTGGTTCAACTATGC+TGG | + | chr1_3:11356394-11356413 | Msa0103860:CDS | 35.0% |
| !! | TTCGAGTTTACGTCCATTTT+AGG | + | chr1_3:11356438-11356457 | Msa0103860:CDS | 35.0% |
| !! | TAAACGAAAGGGGCATTCAA+CGG | - | chr1_3:11355765-11355784 | None:intergenic | 40.0% |
| ACCCACAAAACTGTCTTTCT+AGG | + | chr1_3:11355894-11355913 | Msa0103860:intron | 40.0% | |
| AGTACACCATCTGAAAAGCT+GGG | + | chr1_3:11356009-11356028 | Msa0103860:CDS | 40.0% | |
| GACAACATATCTTGTACACC+AGG | - | chr1_3:11356046-11356065 | None:intergenic | 40.0% | |
| ! | ATAACGAGCTCTGATTGAGT+TGG | + | chr1_3:11356179-11356198 | Msa0103860:intron | 40.0% |
| GAATTTGCAGGAGCAATTGT+TGG | + | chr1_3:11356380-11356399 | Msa0103860:intron | 40.0% | |
| !!! | TTACGTCCATTTTAGGACGA+AGG | + | chr1_3:11356445-11356464 | Msa0103860:CDS | 40.0% |
| !!! | TACGTCCATTTTAGGACGAA+GGG | + | chr1_3:11356446-11356465 | Msa0103860:CDS | 40.0% |
| TTCAAAGAAAAGCTTGGCGA+AGG | + | chr1_3:11356566-11356585 | Msa0103860:CDS | 40.0% | |
| !! | TAAACGAAAGGGGCATTCAA+CGG | - | chr1_3:11355765-11355784 | None:intergenic | 40.0% |
| ACCCACAAAACTGTCTTTCT+AGG | + | chr1_3:11355894-11355913 | Msa0103860:intron | 40.0% | |
| AGTACACCATCTGAAAAGCT+GGG | + | chr1_3:11356009-11356028 | Msa0103860:CDS | 40.0% | |
| GACAACATATCTTGTACACC+AGG | - | chr1_3:11356046-11356065 | None:intergenic | 40.0% | |
| ! | ATAACGAGCTCTGATTGAGT+TGG | + | chr1_3:11356179-11356198 | Msa0103860:intron | 40.0% |
| GAATTTGCAGGAGCAATTGT+TGG | + | chr1_3:11356380-11356399 | Msa0103860:intron | 40.0% | |
| !!! | TTACGTCCATTTTAGGACGA+AGG | + | chr1_3:11356445-11356464 | Msa0103860:CDS | 40.0% |
| !!! | TACGTCCATTTTAGGACGAA+GGG | + | chr1_3:11356446-11356465 | Msa0103860:CDS | 40.0% |
| TTCAAAGAAAAGCTTGGCGA+AGG | + | chr1_3:11356566-11356585 | Msa0103860:CDS | 40.0% | |
| !!! | CTGGTTTTGAGGGAAACTCA+AGG | - | chr1_3:11355814-11355833 | None:intergenic | 45.0% |
| !! | GACAGTTTTGTGGGTCAGAT+AGG | - | chr1_3:11355889-11355908 | None:intergenic | 45.0% |
| GAGTACACCATCTGAAAAGC+TGG | + | chr1_3:11356008-11356027 | Msa0103860:CDS | 45.0% | |
| ! | TTTGGTCCCAGCTTTTCAGA+TGG | - | chr1_3:11356018-11356037 | None:intergenic | 45.0% |
| CTTGTACACCAGGGTTTCTT+TGG | - | chr1_3:11356036-11356055 | None:intergenic | 45.0% | |
| GACACTCTCATAAGGATCAG+TGG | - | chr1_3:11356083-11356102 | None:intergenic | 45.0% | |
| ! | GATAAAGTTTTGCCGGTCTC+AGG | + | chr1_3:11356139-11356158 | Msa0103860:intron | 45.0% |
| !!! | ACGTCCATTTTAGGACGAAG+GGG | + | chr1_3:11356447-11356466 | Msa0103860:CDS | 45.0% |
| GCTCATGGAGCTGTCTATAA+AGG | + | chr1_3:11356590-11356609 | Msa0103860:CDS | 45.0% | |
| !!! | CTGGTTTTGAGGGAAACTCA+AGG | - | chr1_3:11355814-11355833 | None:intergenic | 45.0% |
| !! | GACAGTTTTGTGGGTCAGAT+AGG | - | chr1_3:11355889-11355908 | None:intergenic | 45.0% |
| GAGTACACCATCTGAAAAGC+TGG | + | chr1_3:11356008-11356027 | Msa0103860:CDS | 45.0% | |
| ! | TTTGGTCCCAGCTTTTCAGA+TGG | - | chr1_3:11356018-11356037 | None:intergenic | 45.0% |
| CTTGTACACCAGGGTTTCTT+TGG | - | chr1_3:11356036-11356055 | None:intergenic | 45.0% | |
| GACACTCTCATAAGGATCAG+TGG | - | chr1_3:11356083-11356102 | None:intergenic | 45.0% | |
| ! | GATAAAGTTTTGCCGGTCTC+AGG | + | chr1_3:11356139-11356158 | Msa0103860:intron | 45.0% |
| !!! | ACGTCCATTTTAGGACGAAG+GGG | + | chr1_3:11356447-11356466 | Msa0103860:CDS | 45.0% |
| GCTCATGGAGCTGTCTATAA+AGG | + | chr1_3:11356590-11356609 | Msa0103860:CDS | 45.0% | |
| !! | ATTTAGAAAATAATAATATA+TGG | - | chr1_3:11356342-11356361 | None:intergenic | 5.0% |
| !! | ATTTAGAAAATAATAATATA+TGG | - | chr1_3:11356342-11356361 | None:intergenic | 5.0% |
| !!! | CGTCCATTTTAGGACGAAGG+GGG | + | chr1_3:11356448-11356467 | Msa0103860:CDS | 50.0% |
| CTTCCCCCTTCGTCCTAAAA+TGG | - | chr1_3:11356454-11356473 | None:intergenic | 50.0% | |
| !!! | CGTCCATTTTAGGACGAAGG+GGG | + | chr1_3:11356448-11356467 | Msa0103860:CDS | 50.0% |
| CTTCCCCCTTCGTCCTAAAA+TGG | - | chr1_3:11356454-11356473 | None:intergenic | 50.0% | |
| AGCTGGGACCAAAGAAACCC+TGG | + | chr1_3:11356025-11356044 | Msa0103860:CDS | 55.0% | |
| AAGCTTGGCGAAGGAGCTCA+TGG | + | chr1_3:11356575-11356594 | Msa0103860:CDS | 55.0% | |
| AGCTGGGACCAAAGAAACCC+TGG | + | chr1_3:11356025-11356044 | Msa0103860:CDS | 55.0% | |
| AAGCTTGGCGAAGGAGCTCA+TGG | + | chr1_3:11356575-11356594 | Msa0103860:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 11355686 | 11356622 | 11355686 | ID=Msa0103860;Name=Msa0103860 |
| chr1_3 | mRNA | 11355686 | 11356622 | 11355686 | ID=Msa0103860-mRNA-1;Parent=Msa0103860;Name=Msa0103860-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.33|0.25|1|0.33|0|4|0|203 |
| chr1_3 | exon | 11355686 | 11355816 | 11355686 | ID=Msa0103860-mRNA-1:exon:4631;Parent=Msa0103860-mRNA-1 |
| chr1_3 | exon | 11355916 | 11356097 | 11355916 | ID=Msa0103860-mRNA-1:exon:4632;Parent=Msa0103860-mRNA-1 |
| chr1_3 | exon | 11356233 | 11356295 | 11356233 | ID=Msa0103860-mRNA-1:exon:4633;Parent=Msa0103860-mRNA-1 |
| chr1_3 | exon | 11356390 | 11356622 | 11356390 | ID=Msa0103860-mRNA-1:exon:4634;Parent=Msa0103860-mRNA-1 |
| chr1_3 | CDS | 11355686 | 11355816 | 11355686 | ID=Msa0103860-mRNA-1:cds;Parent=Msa0103860-mRNA-1 |
| chr1_3 | CDS | 11355916 | 11356097 | 11355916 | ID=Msa0103860-mRNA-1:cds;Parent=Msa0103860-mRNA-1 |
| chr1_3 | CDS | 11356233 | 11356295 | 11356233 | ID=Msa0103860-mRNA-1:cds;Parent=Msa0103860-mRNA-1 |
| chr1_3 | CDS | 11356390 | 11356622 | 11356390 | ID=Msa0103860-mRNA-1:cds;Parent=Msa0103860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
