AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1250730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1250730 MtrunA17_Chr8g0365921 95.872 218 9 0 1 218 1 218 2.72e-159 439
Msa1250730 MtrunA17_Chr1g0193061 68.182 220 65 4 1 216 1 219 5.30e-106 304
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1250730 AT1G23440.1 69.725 218 65 1 1 218 1 217 2.32e-113 323
Msa1250730 AT1G23440.3 69.725 218 65 1 1 218 1 217 2.32e-113 323
Msa1250730 AT1G56700.1 61.644 219 82 2 1 218 1 218 2.78e-99 287
Msa1250730 AT1G56700.2 61.644 219 82 2 1 218 1 218 2.78e-99 287
Msa1250730 AT1G56700.4 61.644 219 82 2 1 218 1 218 2.78e-99 287
Msa1250730 AT1G56700.3 60.000 190 74 2 30 218 1 189 3.53e-82 243
Msa1250730 AT1G23440.2 62.222 90 34 0 1 90 1 90 6.47e-35 119

Find 93 sgRNAs with CRISPR-Local

Find 456 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAATAAATTATTTGTTAT+TGG 0.120150 8_2:-46451602 Msa1250730:three_prime_UTR
TTCATCGATTCTCGAAAATA+AGG 0.171114 8_2:+46451923 None:intergenic
TGTTCTTTGATTTATTTATT+TGG 0.182097 8_2:-46451723 Msa1250730:three_prime_UTR
ATAATCTCTGTAGGGTTTAT+TGG 0.189118 8_2:+46454570 None:intergenic
AATCTTGAAATCCTTGAAAA+AGG 0.203646 8_2:-46452066 Msa1250730:CDS
ATTAAGACCTTAACCATTCT+TGG 0.205826 8_2:+46451208 None:intergenic
AAAATTACAATTCATGTAAC+TGG 0.219675 8_2:-46454615 Msa1250730:CDS
AATTCATGAATGTCTGTTCT+TGG 0.239447 8_2:-46451680 Msa1250730:three_prime_UTR
GTCGGTAAAGTTAGCATATA+TGG 0.241397 8_2:-46451274 Msa1250730:three_prime_UTR
AATGGTTAAGGTCTTAATTA+AGG 0.264670 8_2:-46451203 Msa1250730:three_prime_UTR
TTCCGCTGTTCTGATGAATT+AGG 0.270479 8_2:-46453200 Msa1250730:CDS
GAGATTTACAGCCTCTCTTT+TGG 0.294280 8_2:-46451889 Msa1250730:CDS
TCATGGCATTCACATGTAAA+AGG 0.308896 8_2:+46451310 None:intergenic
AGAGTAATTCAAATGTTGTT+TGG 0.313563 8_2:-46454398 Msa1250730:CDS
TTGGAAGGAAGTGGAATATA+AGG 0.343178 8_2:-46451345 Msa1250730:three_prime_UTR
TGTTTGACTCTTCTGCTGTT+TGG 0.356786 8_2:+46455164 None:intergenic
CCTCCATCCTCAAGGACTAT+TGG 0.368174 8_2:+46453018 None:intergenic
CTTCCAGTTGGTGTTACTCT+TGG 0.368291 8_2:-46454510 Msa1250730:CDS
AAGAATTCAGAATTCAGAAA+TGG 0.372313 8_2:-46454655 Msa1250730:exon
GACTGCCATGTCCTGTCATC+TGG 0.374311 8_2:-46451815 Msa1250730:three_prime_UTR
GAGTAATTCAAATGTTGTTT+GGG 0.388882 8_2:-46454397 Msa1250730:intron
TCATCGATTCTCGAAAATAA+GGG 0.399792 8_2:+46451924 None:intergenic
TTCCTTGGTGTGCTTAAGGT+TGG 0.406677 8_2:+46451535 None:intergenic
TTATCTTCCAAGAATGGTTA+AGG 0.412459 8_2:-46451215 Msa1250730:three_prime_UTR
AAATAAATAAATAGTATATG+TGG 0.418546 8_2:-46451241 Msa1250730:three_prime_UTR
ATGTGTATTACCACTCTCTT+CGG 0.421496 8_2:-46451989 Msa1250730:CDS
TACATGTGAATGCCATGATA+AGG 0.423191 8_2:-46451305 Msa1250730:three_prime_UTR
ACTGTTGAGTCAACCTTGTA+TGG 0.423818 8_2:-46451447 Msa1250730:three_prime_UTR
ATTTATGCTTCAGCTTCACT+TGG 0.429836 8_2:-46453282 Msa1250730:intron
TTTATGCTTCAGCTTCACTT+GGG 0.439902 8_2:-46453281 Msa1250730:intron
CTTCCAAGAGTAACACCAAC+TGG 0.451339 8_2:+46454507 None:intergenic
ACTGGGTTTAAGAAGTTTCA+AGG 0.460584 8_2:-46454597 Msa1250730:CDS
TTTCTTCAGTTGGAAGGAAG+TGG 0.461320 8_2:-46451354 Msa1250730:three_prime_UTR
TTATTAACAATAATCTCTGT+AGG 0.465678 8_2:+46454561 None:intergenic
TGGGAATTATCTTCCAAGAA+TGG 0.466260 8_2:-46451221 Msa1250730:three_prime_UTR
GATTTCAAGATTGCATCAAC+AGG 0.476405 8_2:+46452077 None:intergenic
CTGTTTGGATAAAATGCCAC+TGG 0.477189 8_2:+46455179 None:intergenic
AGAATTCAGAATTCAGAAAT+GGG 0.477928 8_2:-46454654 Msa1250730:exon
CATGATAAGGTTATAGTTGT+CGG 0.480433 8_2:-46451292 Msa1250730:three_prime_UTR
ATTTGCTGCCAACCGCTCAA+TGG 0.484329 8_2:+46453232 None:intergenic
AAACTGTACTCAACCATACA+AGG 0.489075 8_2:+46451434 None:intergenic
TGCACTATTCTTGACGTGGC+TGG 0.492051 8_2:-46454483 Msa1250730:CDS
AAGAAGAAAGCAATGCTTTG+CGG 0.495683 8_2:+46455135 None:intergenic
AGGGATTATGTTGAAAAGAA+AGG 0.499009 8_2:-46454534 Msa1250730:CDS
CTCGTGTGGTTAGTGACAGC+GGG 0.506827 8_2:+46455239 None:intergenic
GGAATCTGTTGTGTCGAAAA+CGG 0.508223 8_2:-46454427 Msa1250730:CDS
AAGGTTTGCCATTGAGCGGT+TGG 0.517019 8_2:-46453240 Msa1250730:CDS
TTATGCTTCAGCTTCACTTG+GGG 0.520510 8_2:-46453280 Msa1250730:intron
TTTCGACACAACAGATTCCA+TGG 0.522218 8_2:+46454431 None:intergenic
AATAAATAAATAGTATATGT+GGG 0.522277 8_2:-46451240 Msa1250730:three_prime_UTR
TCTTCGGTTCGCAGAACAGA+AGG 0.529048 8_2:-46451973 Msa1250730:CDS
AATTCAGAAATGGGATCTGA+AGG 0.532059 8_2:-46454645 Msa1250730:exon
ATTCTTGACGTGGCTGGTGA+TGG 0.533255 8_2:-46454477 Msa1250730:CDS
CGACAACTATAACCTTATCA+TGG 0.536591 8_2:+46451293 None:intergenic
TACATACACAACCAGATGAC+AGG 0.536660 8_2:+46451804 None:intergenic
CTGCAAGGTTTGCCATTGAG+CGG 0.540890 8_2:-46453244 Msa1250730:CDS
AGATTATTGTTAATAATCTG+AGG 0.547702 8_2:-46454554 Msa1250730:CDS
TATTAACAATAATCTCTGTA+GGG 0.553359 8_2:+46454562 None:intergenic
AAATTACAATTCATGTAACT+GGG 0.560230 8_2:-46454614 Msa1250730:CDS
GAGAAATTCCTCCATCCTCA+AGG 0.563765 8_2:+46453010 None:intergenic
TATGCTTCAGCTTCACTTGG+GGG 0.574889 8_2:-46453279 Msa1250730:intron
CCACAGTCGTGTTTCTCGTG+TGG 0.577249 8_2:+46455225 None:intergenic
GTCACACTTCGTGAATTCCC+AGG 0.577319 8_2:-46455042 Msa1250730:intron
TCCTCAGCTTTATCAGACCA+TGG 0.578488 8_2:-46454448 Msa1250730:CDS
GATTATTGTTAATAATCTGA+GGG 0.580790 8_2:-46454553 Msa1250730:CDS
GAAAAGAAAGGTCTTCCAGT+TGG 0.590107 8_2:-46454522 Msa1250730:CDS
AGGAATTTCTCGAACGAGAG+AGG 0.595662 8_2:-46452998 Msa1250730:intron
GTACCAATAGTCCTTGAGGA+TGG 0.605270 8_2:-46453021 Msa1250730:CDS
GATTGCACAGATATATATGC+TGG 0.605384 8_2:-46451658 Msa1250730:three_prime_UTR
TTATTAACATGCAGAAGCAA+TGG 0.607143 8_2:+46451863 None:intergenic
TCTCGTGTGGTTAGTGACAG+CGG 0.615212 8_2:+46455238 None:intergenic
CCAATAGTCCTTGAGGATGG+AGG 0.618477 8_2:-46453018 Msa1250730:CDS
TTATGACGTGATGATATCAC+AGG 0.624899 8_2:-46452036 Msa1250730:CDS
GGGTGAACAGTGGAGCTGCA+AGG 0.626140 8_2:-46453259 Msa1250730:CDS
GCAAGTACCAATAGTCCTTG+AGG 0.628947 8_2:-46453025 Msa1250730:CDS
ATTCAGAAATGGGATCTGAA+GGG 0.630200 8_2:-46454644 Msa1250730:exon
CTTCGGTTCGCAGAACAGAA+GGG 0.630794 8_2:-46451972 Msa1250730:CDS
GCTGTTCTGATGAATTAGGA+TGG 0.630988 8_2:-46453196 Msa1250730:CDS
CACAACCAGATGACAGGACA+TGG 0.632247 8_2:+46451810 None:intergenic
AATTGATTGAATTGTATGCA+AGG 0.637455 8_2:-46451837 Msa1250730:three_prime_UTR
AGCAATGGCCTCCAAAAGAG+AGG 0.639282 8_2:+46451878 None:intergenic
AAGTTGCACTATTCTTGACG+TGG 0.643245 8_2:-46454487 Msa1250730:CDS
TCCATGGTCTGATAAAGCTG+AGG 0.663058 8_2:+46454447 None:intergenic
TGTTTGGATAAAATGCCACT+GGG 0.663298 8_2:+46455180 None:intergenic
GGCTATATTTGTGTATGACT+AGG 0.670813 8_2:-46451393 Msa1250730:three_prime_UTR
ATATTTGTGTATGACTAGGA+TGG 0.674241 8_2:-46451389 Msa1250730:three_prime_UTR
ATCCTAATTCATCAGAACAG+CGG 0.674516 8_2:+46453198 None:intergenic
TGCACAGATATATATGCTGG+TGG 0.698158 8_2:-46451655 Msa1250730:three_prime_UTR
GTTCTGCGAACCGAAGAGAG+TGG 0.713903 8_2:+46451979 None:intergenic
GACCAACCTTAAGCACACCA+AGG 0.715654 8_2:-46451537 Msa1250730:three_prime_UTR
GTGATGATATCACAGGACGC+AGG 0.742675 8_2:-46452029 Msa1250730:CDS
CCACACGAGAAACACGACTG+TGG 0.747428 8_2:-46455225 Msa1250730:five_prime_UTR
GTTTGGATAAAATGCCACTG+GGG 0.838992 8_2:+46455181 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATAATACTACAAAA+AGG + chr8_2:46451309-46451328 None:intergenic 10.0%
!! AATGAAATTAATTAAACATA+AGG + chr8_2:46451492-46451511 None:intergenic 10.0%
!!! ATTTATTACTACAATTTTAA+AGG + chr8_2:46452427-46452446 None:intergenic 10.0%
!! TTCTATTATAAAAATAATAC+AGG + chr8_2:46453098-46453117 None:intergenic 10.0%
!!! AGAAATAAATTATTTGTTAT+TGG - chr8_2:46454809-46454828 Msa1250730:intron 10.0%
!! AAATAAATAAATAGTATATG+TGG - chr8_2:46455170-46455189 Msa1250730:five_prime_UTR 10.0%
!! AATAAATAAATAGTATATGT+GGG - chr8_2:46455171-46455190 Msa1250730:five_prime_UTR 10.0%
!! ATAAAAATAATACTACAAAA+AGG + chr8_2:46451309-46451328 None:intergenic 10.0%
!! AATGAAATTAATTAAACATA+AGG + chr8_2:46451492-46451511 None:intergenic 10.0%
!!! ATTTATTACTACAATTTTAA+AGG + chr8_2:46452427-46452446 None:intergenic 10.0%
!! TTCTATTATAAAAATAATAC+AGG + chr8_2:46453098-46453117 None:intergenic 10.0%
!!! AGAAATAAATTATTTGTTAT+TGG - chr8_2:46454809-46454828 Msa1250730:intron 10.0%
!! AAATAAATAAATAGTATATG+TGG - chr8_2:46455170-46455189 Msa1250730:five_prime_UTR 10.0%
!! AATAAATAAATAGTATATGT+GGG - chr8_2:46455171-46455190 Msa1250730:five_prime_UTR 10.0%
!! TAATTTAGTGTGATAATTAT+TGG - chr8_2:46451679-46451698 Msa1250730:three_prime_UTR 15.0%
!! TAAAAAGTTTAAACGAAAAT+TGG - chr8_2:46451724-46451743 Msa1250730:three_prime_UTR 15.0%
!! AAAAAGTTTAAACGAAAATT+GGG - chr8_2:46451725-46451744 Msa1250730:three_prime_UTR 15.0%
!!! TTTATTTTGTCTTTTGTTAT+AGG - chr8_2:46452178-46452197 Msa1250730:intron 15.0%
!! AATAAATAGCATATAAGTAT+AGG - chr8_2:46452440-46452459 Msa1250730:intron 15.0%
!!! TTATCTTTTATAGATGAAAT+TGG - chr8_2:46453271-46453290 Msa1250730:CDS 15.0%
!! TGAAAAGTAAAATCTTTATT+CGG + chr8_2:46453664-46453683 None:intergenic 15.0%
!!! TGTTCTTTGATTTATTTATT+TGG - chr8_2:46454688-46454707 Msa1250730:five_prime_UTR 15.0%
!!! AATAATTTATTTCTTTTGCT+TGG + chr8_2:46454803-46454822 None:intergenic 15.0%
!!! TTTTAAACAAAACATTTGAA+TGG - chr8_2:46454997-46455016 Msa1250730:intron 15.0%
!! TAATTTAGTGTGATAATTAT+TGG - chr8_2:46451679-46451698 Msa1250730:three_prime_UTR 15.0%
!! TAAAAAGTTTAAACGAAAAT+TGG - chr8_2:46451724-46451743 Msa1250730:three_prime_UTR 15.0%
!! AAAAAGTTTAAACGAAAATT+GGG - chr8_2:46451725-46451744 Msa1250730:three_prime_UTR 15.0%
!!! TTTATTTTGTCTTTTGTTAT+AGG - chr8_2:46452178-46452197 Msa1250730:intron 15.0%
!! AATAAATAGCATATAAGTAT+AGG - chr8_2:46452440-46452459 Msa1250730:intron 15.0%
!!! TTATCTTTTATAGATGAAAT+TGG - chr8_2:46453271-46453290 Msa1250730:CDS 15.0%
!! TGAAAAGTAAAATCTTTATT+CGG + chr8_2:46453664-46453683 None:intergenic 15.0%
!!! TGTTCTTTGATTTATTTATT+TGG - chr8_2:46454688-46454707 Msa1250730:five_prime_UTR 15.0%
!!! AATAATTTATTTCTTTTGCT+TGG + chr8_2:46454803-46454822 None:intergenic 15.0%
!!! TTTTAAACAAAACATTTGAA+TGG - chr8_2:46454997-46455016 Msa1250730:intron 15.0%
!! AATTGATCAATTTAGTGAAA+AGG - chr8_2:46451569-46451588 Msa1250730:three_prime_UTR 20.0%
!! ATTGATCAATTTAGTGAAAA+GGG - chr8_2:46451570-46451589 Msa1250730:three_prime_UTR 20.0%
!!! ACATGAATTGTAATTTTCTT+TGG + chr8_2:46451793-46451812 None:intergenic 20.0%
!! AAAATTACAATTCATGTAAC+TGG - chr8_2:46451796-46451815 Msa1250730:three_prime_UTR 20.0%
!! AAATTACAATTCATGTAACT+GGG - chr8_2:46451797-46451816 Msa1250730:three_prime_UTR 20.0%
!! TATTAACAATAATCTCTGTA+GGG + chr8_2:46451852-46451871 None:intergenic 20.0%
!! TTATTAACAATAATCTCTGT+AGG + chr8_2:46451853-46451872 None:intergenic 20.0%
!! AGATTATTGTTAATAATCTG+AGG - chr8_2:46451857-46451876 Msa1250730:exon 20.0%
!! GATTATTGTTAATAATCTGA+GGG - chr8_2:46451858-46451877 Msa1250730:exon 20.0%
!! ATTGAATTGCATTAGAAATT+TGG - chr8_2:46452559-46452578 Msa1250730:intron 20.0%
!! AAACAAAATAACACTCAATA+AGG + chr8_2:46452721-46452740 None:intergenic 20.0%
!! TAAAAATCTCATAATTAACG+AGG + chr8_2:46452785-46452804 None:intergenic 20.0%
!!! AGAACTTTTTTTTTTGTATC+AGG - chr8_2:46453745-46453764 Msa1250730:intron 20.0%
!!! ATCTTTAAAGTTTAAATCGA+TGG - chr8_2:46454169-46454188 Msa1250730:intron 20.0%
!!! TGTATTTTATTTTCTTCAGT+TGG - chr8_2:46455047-46455066 Msa1250730:five_prime_UTR 20.0%
!! AATTGATCAATTTAGTGAAA+AGG - chr8_2:46451569-46451588 Msa1250730:three_prime_UTR 20.0%
!! ATTGATCAATTTAGTGAAAA+GGG - chr8_2:46451570-46451589 Msa1250730:three_prime_UTR 20.0%
!!! ACATGAATTGTAATTTTCTT+TGG + chr8_2:46451793-46451812 None:intergenic 20.0%
!! AAAATTACAATTCATGTAAC+TGG - chr8_2:46451796-46451815 Msa1250730:three_prime_UTR 20.0%
!! AAATTACAATTCATGTAACT+GGG - chr8_2:46451797-46451816 Msa1250730:three_prime_UTR 20.0%
!! TATTAACAATAATCTCTGTA+GGG + chr8_2:46451852-46451871 None:intergenic 20.0%
!! TTATTAACAATAATCTCTGT+AGG + chr8_2:46451853-46451872 None:intergenic 20.0%
!! AGATTATTGTTAATAATCTG+AGG - chr8_2:46451857-46451876 Msa1250730:exon 20.0%
!! GATTATTGTTAATAATCTGA+GGG - chr8_2:46451858-46451877 Msa1250730:exon 20.0%
!! ATTGAATTGCATTAGAAATT+TGG - chr8_2:46452559-46452578 Msa1250730:intron 20.0%
!! AAACAAAATAACACTCAATA+AGG + chr8_2:46452721-46452740 None:intergenic 20.0%
!! TAAAAATCTCATAATTAACG+AGG + chr8_2:46452785-46452804 None:intergenic 20.0%
!!! AGAACTTTTTTTTTTGTATC+AGG - chr8_2:46453745-46453764 Msa1250730:intron 20.0%
!!! ATCTTTAAAGTTTAAATCGA+TGG - chr8_2:46454169-46454188 Msa1250730:intron 20.0%
!!! TGTATTTTATTTTCTTCAGT+TGG - chr8_2:46455047-46455066 Msa1250730:five_prime_UTR 20.0%
! TTAATTAAACATAAGGTAGC+AGG + chr8_2:46451485-46451504 None:intergenic 25.0%
! AAGAATTCAGAATTCAGAAA+TGG - chr8_2:46451756-46451775 Msa1250730:three_prime_UTR 25.0%
! AGAATTCAGAATTCAGAAAT+GGG - chr8_2:46451757-46451776 Msa1250730:three_prime_UTR 25.0%
! AGAGTAATTCAAATGTTGTT+TGG - chr8_2:46452013-46452032 Msa1250730:CDS 25.0%
!! GAGTAATTCAAATGTTGTTT+GGG - chr8_2:46452014-46452033 Msa1250730:CDS 25.0%
! GTTGAAAACAGCTTATAAAT+TGG + chr8_2:46452108-46452127 None:intergenic 25.0%
! ATAGCATAAACAATTGTCAT+AGG + chr8_2:46452359-46452378 None:intergenic 25.0%
! ACTTAGAAACAGAAAGAAAA+CGG + chr8_2:46452748-46452767 None:intergenic 25.0%
!! ATGAGATTTTTATAACTCTG+TGG - chr8_2:46452793-46452812 Msa1250730:intron 25.0%
!! TGAGATTTTTATAACTCTGT+GGG - chr8_2:46452794-46452813 Msa1250730:intron 25.0%
! TACAAAATGTTGTTAAACAG+TGG + chr8_2:46452904-46452923 None:intergenic 25.0%
! ATGTTGTAAAATAGCAGTTA+TGG + chr8_2:46452995-46453014 None:intergenic 25.0%
!!! ACTGCTATTTTACAACATTA+TGG - chr8_2:46452997-46453016 Msa1250730:intron 25.0%
!!! CTGCTATTTTACAACATTAT+GGG - chr8_2:46452998-46453017 Msa1250730:intron 25.0%
! AAATTGGAAAAAAAGCTACA+AGG - chr8_2:46453287-46453306 Msa1250730:intron 25.0%
! CAAATCTTCACCTTATAAAT+TGG - chr8_2:46453558-46453577 Msa1250730:intron 25.0%
! AACGTTAATGCTGTATTAAT+TGG - chr8_2:46453606-46453625 Msa1250730:intron 25.0%
! TTTCATTGATGTGTATTAGT+TGG - chr8_2:46453679-46453698 Msa1250730:intron 25.0%
! TAGAGAAAGAACAAATCAAT+AGG - chr8_2:46453712-46453731 Msa1250730:intron 25.0%
! AATTTGCAACATCAATTATG+GGG + chr8_2:46453798-46453817 None:intergenic 25.0%
! GAATTTGCAACATCAATTAT+GGG + chr8_2:46453799-46453818 None:intergenic 25.0%
!!! TATAGTCTTATAGACTTGTA+TGG - chr8_2:46453857-46453876 Msa1250730:intron 25.0%
!!! ATCTTTTTACTTTTGAACCA+AGG + chr8_2:46453905-46453924 None:intergenic 25.0%
! ACGACTTGTCTTAAATATTA+TGG - chr8_2:46454048-46454067 Msa1250730:intron 25.0%
! AATCTTGAAATCCTTGAAAA+AGG - chr8_2:46454345-46454364 Msa1250730:intron 25.0%
! ATCTTGAAATCCTTGAAAAA+GGG - chr8_2:46454346-46454365 Msa1250730:intron 25.0%
!!! ATAATCTTTTCCCTTTTTCA+AGG + chr8_2:46454359-46454378 None:intergenic 25.0%
! AATTGATTGAATTGTATGCA+AGG - chr8_2:46454574-46454593 Msa1250730:CDS 25.0%
!!! TTTTATTTTCTTCAGTTGGA+AGG - chr8_2:46455051-46455070 Msa1250730:five_prime_UTR 25.0%
! AATGGTTAAGGTCTTAATTA+AGG - chr8_2:46455208-46455227 Msa1250730:five_prime_UTR 25.0%
! TTAATTAAACATAAGGTAGC+AGG + chr8_2:46451485-46451504 None:intergenic 25.0%
! AAGAATTCAGAATTCAGAAA+TGG - chr8_2:46451756-46451775 Msa1250730:three_prime_UTR 25.0%
! AGAATTCAGAATTCAGAAAT+GGG - chr8_2:46451757-46451776 Msa1250730:three_prime_UTR 25.0%
! AGAGTAATTCAAATGTTGTT+TGG - chr8_2:46452013-46452032 Msa1250730:CDS 25.0%
!! GAGTAATTCAAATGTTGTTT+GGG - chr8_2:46452014-46452033 Msa1250730:CDS 25.0%
! GTTGAAAACAGCTTATAAAT+TGG + chr8_2:46452108-46452127 None:intergenic 25.0%
! ATAGCATAAACAATTGTCAT+AGG + chr8_2:46452359-46452378 None:intergenic 25.0%
! ACTTAGAAACAGAAAGAAAA+CGG + chr8_2:46452748-46452767 None:intergenic 25.0%
!! ATGAGATTTTTATAACTCTG+TGG - chr8_2:46452793-46452812 Msa1250730:intron 25.0%
!! TGAGATTTTTATAACTCTGT+GGG - chr8_2:46452794-46452813 Msa1250730:intron 25.0%
! TACAAAATGTTGTTAAACAG+TGG + chr8_2:46452904-46452923 None:intergenic 25.0%
! ATGTTGTAAAATAGCAGTTA+TGG + chr8_2:46452995-46453014 None:intergenic 25.0%
!!! ACTGCTATTTTACAACATTA+TGG - chr8_2:46452997-46453016 Msa1250730:intron 25.0%
!!! CTGCTATTTTACAACATTAT+GGG - chr8_2:46452998-46453017 Msa1250730:intron 25.0%
! AAATTGGAAAAAAAGCTACA+AGG - chr8_2:46453287-46453306 Msa1250730:intron 25.0%
! CAAATCTTCACCTTATAAAT+TGG - chr8_2:46453558-46453577 Msa1250730:intron 25.0%
! AACGTTAATGCTGTATTAAT+TGG - chr8_2:46453606-46453625 Msa1250730:intron 25.0%
! TTTCATTGATGTGTATTAGT+TGG - chr8_2:46453679-46453698 Msa1250730:intron 25.0%
! TAGAGAAAGAACAAATCAAT+AGG - chr8_2:46453712-46453731 Msa1250730:intron 25.0%
! AATTTGCAACATCAATTATG+GGG + chr8_2:46453798-46453817 None:intergenic 25.0%
! GAATTTGCAACATCAATTAT+GGG + chr8_2:46453799-46453818 None:intergenic 25.0%
!!! TATAGTCTTATAGACTTGTA+TGG - chr8_2:46453857-46453876 Msa1250730:intron 25.0%
!!! ATCTTTTTACTTTTGAACCA+AGG + chr8_2:46453905-46453924 None:intergenic 25.0%
! ACGACTTGTCTTAAATATTA+TGG - chr8_2:46454048-46454067 Msa1250730:intron 25.0%
! AATCTTGAAATCCTTGAAAA+AGG - chr8_2:46454345-46454364 Msa1250730:intron 25.0%
! ATCTTGAAATCCTTGAAAAA+GGG - chr8_2:46454346-46454365 Msa1250730:intron 25.0%
!!! ATAATCTTTTCCCTTTTTCA+AGG + chr8_2:46454359-46454378 None:intergenic 25.0%
! AATTGATTGAATTGTATGCA+AGG - chr8_2:46454574-46454593 Msa1250730:CDS 25.0%
!!! TTTTATTTTCTTCAGTTGGA+AGG - chr8_2:46455051-46455070 Msa1250730:five_prime_UTR 25.0%
! AATGGTTAAGGTCTTAATTA+AGG - chr8_2:46455208-46455227 Msa1250730:five_prime_UTR 25.0%
CCATGAAAAAGAGAGAAAAA+TGG + chr8_2:46451397-46451416 None:intergenic 30.0%
!! CCATTTTTCTCTCTTTTTCA+TGG - chr8_2:46451394-46451413 Msa1250730:three_prime_UTR 30.0%
AAGAGACAGAGAAACATAAT+TGG + chr8_2:46451439-46451458 None:intergenic 30.0%
TAGCAGAAATTAAGATTGTG+TGG + chr8_2:46451462-46451481 None:intergenic 30.0%
ATAATCTCTGTAGGGTTTAT+TGG + chr8_2:46451844-46451863 None:intergenic 30.0%
AGGGATTATGTTGAAAAGAA+AGG - chr8_2:46451877-46451896 Msa1250730:CDS 30.0%
TCTCTAGTGTCAATTTAGAT+GGG + chr8_2:46452257-46452276 None:intergenic 30.0%
GTACTATCGTATAATCTGTT+TGG + chr8_2:46452405-46452424 None:intergenic 30.0%
! TATCATTTTCACCACATTTC+TGG - chr8_2:46452527-46452546 Msa1250730:intron 30.0%
!! ATTTGTTTCTACCAGAAATG+TGG + chr8_2:46452541-46452560 None:intergenic 30.0%
TGTCAATTGCATAACAGTAA+TGG + chr8_2:46452698-46452717 None:intergenic 30.0%
TTGTAAAATAGCAGTTATGG+CGG + chr8_2:46452992-46453011 None:intergenic 30.0%
CATTATGGGTAACCAATAAT+CGG - chr8_2:46453012-46453031 Msa1250730:CDS 30.0%
! AGCTACAAGGTTTTCTTAAA+TGG - chr8_2:46453300-46453319 Msa1250730:intron 30.0%
! TACTTGCTGCAAAAGAAAAT+TGG + chr8_2:46453373-46453392 None:intergenic 30.0%
! CATGTTGGATTGCATTTTAT+AGG - chr8_2:46453479-46453498 Msa1250730:intron 30.0%
CCTCACAAAACCAATTTATA+AGG + chr8_2:46453571-46453590 None:intergenic 30.0%
!!! CCTTATAAATTGGTTTTGTG+AGG - chr8_2:46453568-46453587 Msa1250730:intron 30.0%
AATGCTGTATTAATTGGTTG+AGG - chr8_2:46453612-46453631 Msa1250730:intron 30.0%
ATGCTGTATTAATTGGTTGA+GGG - chr8_2:46453613-46453632 Msa1250730:intron 30.0%
GGAATTTGCAACATCAATTA+TGG + chr8_2:46453800-46453819 None:intergenic 30.0%
CTTAAGCTAGAATAATAGGA+AGG + chr8_2:46454017-46454036 None:intergenic 30.0%
!! CTTCCTATTATTCTAGCTTA+AGG - chr8_2:46454015-46454034 Msa1250730:intron 30.0%
CAACCTTAAGCTAGAATAAT+AGG + chr8_2:46454021-46454040 None:intergenic 30.0%
!! CTATTATTCTAGCTTAAGGT+TGG - chr8_2:46454019-46454038 Msa1250730:intron 30.0%
CTCATAGTTTACTGATATGT+GGG + chr8_2:46454118-46454137 None:intergenic 30.0%
ACTCATAGTTTACTGATATG+TGG + chr8_2:46454119-46454138 None:intergenic 30.0%
AATGATCATTGAACTCTGTT+GGG + chr8_2:46454146-46454165 None:intergenic 30.0%
AAATGATCATTGAACTCTGT+TGG + chr8_2:46454147-46454166 None:intergenic 30.0%
!! TCATCGATTCTCGAAAATAA+GGG + chr8_2:46454490-46454509 None:intergenic 30.0%
!! TTCATCGATTCTCGAAAATA+AGG + chr8_2:46454491-46454510 None:intergenic 30.0%
TTATTAACATGCAGAAGCAA+TGG + chr8_2:46454551-46454570 None:intergenic 30.0%
AATTCATGAATGTCTGTTCT+TGG - chr8_2:46454731-46454750 Msa1250730:intron 30.0%
ATATTTGTGTATGACTAGGA+TGG - chr8_2:46455022-46455041 Msa1250730:intron 30.0%
CATGATAAGGTTATAGTTGT+CGG - chr8_2:46455119-46455138 Msa1250730:five_prime_UTR 30.0%
TTATCTTCCAAGAATGGTTA+AGG - chr8_2:46455196-46455215 Msa1250730:five_prime_UTR 30.0%
ATTAAGACCTTAACCATTCT+TGG + chr8_2:46455206-46455225 None:intergenic 30.0%
CCATGAAAAAGAGAGAAAAA+TGG + chr8_2:46451397-46451416 None:intergenic 30.0%
!! CCATTTTTCTCTCTTTTTCA+TGG - chr8_2:46451394-46451413 Msa1250730:three_prime_UTR 30.0%
AAGAGACAGAGAAACATAAT+TGG + chr8_2:46451439-46451458 None:intergenic 30.0%
TAGCAGAAATTAAGATTGTG+TGG + chr8_2:46451462-46451481 None:intergenic 30.0%
ATAATCTCTGTAGGGTTTAT+TGG + chr8_2:46451844-46451863 None:intergenic 30.0%
AGGGATTATGTTGAAAAGAA+AGG - chr8_2:46451877-46451896 Msa1250730:CDS 30.0%
TCTCTAGTGTCAATTTAGAT+GGG + chr8_2:46452257-46452276 None:intergenic 30.0%
GTACTATCGTATAATCTGTT+TGG + chr8_2:46452405-46452424 None:intergenic 30.0%
! TATCATTTTCACCACATTTC+TGG - chr8_2:46452527-46452546 Msa1250730:intron 30.0%
!! ATTTGTTTCTACCAGAAATG+TGG + chr8_2:46452541-46452560 None:intergenic 30.0%
TGTCAATTGCATAACAGTAA+TGG + chr8_2:46452698-46452717 None:intergenic 30.0%
TTGTAAAATAGCAGTTATGG+CGG + chr8_2:46452992-46453011 None:intergenic 30.0%
CATTATGGGTAACCAATAAT+CGG - chr8_2:46453012-46453031 Msa1250730:CDS 30.0%
! AGCTACAAGGTTTTCTTAAA+TGG - chr8_2:46453300-46453319 Msa1250730:intron 30.0%
! TACTTGCTGCAAAAGAAAAT+TGG + chr8_2:46453373-46453392 None:intergenic 30.0%
! CATGTTGGATTGCATTTTAT+AGG - chr8_2:46453479-46453498 Msa1250730:intron 30.0%
CCTCACAAAACCAATTTATA+AGG + chr8_2:46453571-46453590 None:intergenic 30.0%
!!! CCTTATAAATTGGTTTTGTG+AGG - chr8_2:46453568-46453587 Msa1250730:intron 30.0%
AATGCTGTATTAATTGGTTG+AGG - chr8_2:46453612-46453631 Msa1250730:intron 30.0%
ATGCTGTATTAATTGGTTGA+GGG - chr8_2:46453613-46453632 Msa1250730:intron 30.0%
GGAATTTGCAACATCAATTA+TGG + chr8_2:46453800-46453819 None:intergenic 30.0%
CTTAAGCTAGAATAATAGGA+AGG + chr8_2:46454017-46454036 None:intergenic 30.0%
!! CTTCCTATTATTCTAGCTTA+AGG - chr8_2:46454015-46454034 Msa1250730:intron 30.0%
CAACCTTAAGCTAGAATAAT+AGG + chr8_2:46454021-46454040 None:intergenic 30.0%
!! CTATTATTCTAGCTTAAGGT+TGG - chr8_2:46454019-46454038 Msa1250730:intron 30.0%
CTCATAGTTTACTGATATGT+GGG + chr8_2:46454118-46454137 None:intergenic 30.0%
ACTCATAGTTTACTGATATG+TGG + chr8_2:46454119-46454138 None:intergenic 30.0%
AATGATCATTGAACTCTGTT+GGG + chr8_2:46454146-46454165 None:intergenic 30.0%
AAATGATCATTGAACTCTGT+TGG + chr8_2:46454147-46454166 None:intergenic 30.0%
!! TCATCGATTCTCGAAAATAA+GGG + chr8_2:46454490-46454509 None:intergenic 30.0%
!! TTCATCGATTCTCGAAAATA+AGG + chr8_2:46454491-46454510 None:intergenic 30.0%
TTATTAACATGCAGAAGCAA+TGG + chr8_2:46454551-46454570 None:intergenic 30.0%
AATTCATGAATGTCTGTTCT+TGG - chr8_2:46454731-46454750 Msa1250730:intron 30.0%
ATATTTGTGTATGACTAGGA+TGG - chr8_2:46455022-46455041 Msa1250730:intron 30.0%
CATGATAAGGTTATAGTTGT+CGG - chr8_2:46455119-46455138 Msa1250730:five_prime_UTR 30.0%
TTATCTTCCAAGAATGGTTA+AGG - chr8_2:46455196-46455215 Msa1250730:five_prime_UTR 30.0%
ATTAAGACCTTAACCATTCT+TGG + chr8_2:46455206-46455225 None:intergenic 30.0%
! GTAATATTTTCATACCCCAG+TGG - chr8_2:46451216-46451235 Msa1250730:three_prime_UTR 35.0%
TGTTTGGATAAAATGCCACT+GGG + chr8_2:46451234-46451253 None:intergenic 35.0%
AAGAAGAAAGCAATGCTTTG+CGG + chr8_2:46451279-46451298 None:intergenic 35.0%
! CGAAGTGTGACAATTTTGTT+TGG + chr8_2:46451360-46451379 None:intergenic 35.0%
AAGAGAGAAAAATGGTACCT+GGG + chr8_2:46451389-46451408 None:intergenic 35.0%
AAAGAGAGAAAAATGGTACC+TGG + chr8_2:46451390-46451409 None:intergenic 35.0%
AATTCAGAAATGGGATCTGA+AGG - chr8_2:46451766-46451785 Msa1250730:three_prime_UTR 35.0%
ATTCAGAAATGGGATCTGAA+GGG - chr8_2:46451767-46451786 Msa1250730:three_prime_UTR 35.0%
ACTGGGTTTAAGAAGTTTCA+AGG - chr8_2:46451814-46451833 Msa1250730:three_prime_UTR 35.0%
CTCTCTAGTGTCAATTTAGA+TGG + chr8_2:46452258-46452277 None:intergenic 35.0%
TGCTAGACATTGTAACACAT+CGG - chr8_2:46452640-46452659 Msa1250730:intron 35.0%
!! AGTGGTTATAGAAGCACTAT+AGG + chr8_2:46452886-46452905 None:intergenic 35.0%
CACGTATCGCTAAACAATAA+TGG - chr8_2:46452930-46452949 Msa1250730:intron 35.0%
GTTATAGGGCTATAGTATAG+TGG + chr8_2:46452968-46452987 None:intergenic 35.0%
! ACTCAACATCTACCGATTAT+TGG + chr8_2:46453027-46453046 None:intergenic 35.0%
GAAGCTGAAGCATAAATTCA+AGG + chr8_2:46453126-46453145 None:intergenic 35.0%
ATTTATGCTTCAGCTTCACT+TGG - chr8_2:46453129-46453148 Msa1250730:intron 35.0%
TTTATGCTTCAGCTTCACTT+GGG - chr8_2:46453130-46453149 Msa1250730:intron 35.0%
ATCCTAATTCATCAGAACAG+CGG + chr8_2:46453216-46453235 None:intergenic 35.0%
ACGATATCAGATGCAAAACA+TGG + chr8_2:46453337-46453356 None:intergenic 35.0%
!!! TGGTTTTGTGAGGTTAAGTT+AGG - chr8_2:46453578-46453597 Msa1250730:intron 35.0%
GTCTTATAGACTTGTATGGT+TGG - chr8_2:46453861-46453880 Msa1250730:intron 35.0%
GAACACACGATATTTGATCA+TGG - chr8_2:46453943-46453962 Msa1250730:intron 35.0%
CGATATTTGATCATGGAGTT+CGG - chr8_2:46453950-46453969 Msa1250730:intron 35.0%
TAGTTTACTGATATGTGGGT+AGG + chr8_2:46454114-46454133 None:intergenic 35.0%
AAACCAAAACGAACTTGCAA+AGG - chr8_2:46454202-46454221 Msa1250730:intron 35.0%
! ATTCCTTTGCAAGTTCGTTT+TGG + chr8_2:46454208-46454227 None:intergenic 35.0%
GATTTCAAGATTGCATCAAC+AGG + chr8_2:46454337-46454356 None:intergenic 35.0%
TTATGACGTGATGATATCAC+AGG - chr8_2:46454375-46454394 Msa1250730:intron 35.0%
ATGTGTATTACCACTCTCTT+CGG - chr8_2:46454422-46454441 Msa1250730:CDS 35.0%
GATTGCACAGATATATATGC+TGG - chr8_2:46454753-46454772 Msa1250730:intron 35.0%
AGCAAAAATGACACACATGT+TGG - chr8_2:46454844-46454863 Msa1250730:intron 35.0%
!! ATTTTTCCTTGGTGTGCTTA+AGG + chr8_2:46454883-46454902 None:intergenic 35.0%
AAACTGTACTCAACCATACA+AGG + chr8_2:46454980-46454999 None:intergenic 35.0%
GGCTATATTTGTGTATGACT+AGG - chr8_2:46455018-46455037 Msa1250730:intron 35.0%
TTGGAAGGAAGTGGAATATA+AGG - chr8_2:46455066-46455085 Msa1250730:five_prime_UTR 35.0%
TCATGGCATTCACATGTAAA+AGG + chr8_2:46455104-46455123 None:intergenic 35.0%
TACATGTGAATGCCATGATA+AGG - chr8_2:46455106-46455125 Msa1250730:five_prime_UTR 35.0%
CGACAACTATAACCTTATCA+TGG + chr8_2:46455121-46455140 None:intergenic 35.0%
GTCGGTAAAGTTAGCATATA+TGG - chr8_2:46455137-46455156 Msa1250730:five_prime_UTR 35.0%
TGGGAATTATCTTCCAAGAA+TGG - chr8_2:46455190-46455209 Msa1250730:five_prime_UTR 35.0%
! GTAATATTTTCATACCCCAG+TGG - chr8_2:46451216-46451235 Msa1250730:three_prime_UTR 35.0%
TGTTTGGATAAAATGCCACT+GGG + chr8_2:46451234-46451253 None:intergenic 35.0%
AAGAAGAAAGCAATGCTTTG+CGG + chr8_2:46451279-46451298 None:intergenic 35.0%
! CGAAGTGTGACAATTTTGTT+TGG + chr8_2:46451360-46451379 None:intergenic 35.0%
AAGAGAGAAAAATGGTACCT+GGG + chr8_2:46451389-46451408 None:intergenic 35.0%
AAAGAGAGAAAAATGGTACC+TGG + chr8_2:46451390-46451409 None:intergenic 35.0%
AATTCAGAAATGGGATCTGA+AGG - chr8_2:46451766-46451785 Msa1250730:three_prime_UTR 35.0%
ATTCAGAAATGGGATCTGAA+GGG - chr8_2:46451767-46451786 Msa1250730:three_prime_UTR 35.0%
ACTGGGTTTAAGAAGTTTCA+AGG - chr8_2:46451814-46451833 Msa1250730:three_prime_UTR 35.0%
CTCTCTAGTGTCAATTTAGA+TGG + chr8_2:46452258-46452277 None:intergenic 35.0%
TGCTAGACATTGTAACACAT+CGG - chr8_2:46452640-46452659 Msa1250730:intron 35.0%
!! AGTGGTTATAGAAGCACTAT+AGG + chr8_2:46452886-46452905 None:intergenic 35.0%
CACGTATCGCTAAACAATAA+TGG - chr8_2:46452930-46452949 Msa1250730:intron 35.0%
GTTATAGGGCTATAGTATAG+TGG + chr8_2:46452968-46452987 None:intergenic 35.0%
! ACTCAACATCTACCGATTAT+TGG + chr8_2:46453027-46453046 None:intergenic 35.0%
GAAGCTGAAGCATAAATTCA+AGG + chr8_2:46453126-46453145 None:intergenic 35.0%
ATTTATGCTTCAGCTTCACT+TGG - chr8_2:46453129-46453148 Msa1250730:intron 35.0%
TTTATGCTTCAGCTTCACTT+GGG - chr8_2:46453130-46453149 Msa1250730:intron 35.0%
ATCCTAATTCATCAGAACAG+CGG + chr8_2:46453216-46453235 None:intergenic 35.0%
ACGATATCAGATGCAAAACA+TGG + chr8_2:46453337-46453356 None:intergenic 35.0%
!!! TGGTTTTGTGAGGTTAAGTT+AGG - chr8_2:46453578-46453597 Msa1250730:intron 35.0%
GTCTTATAGACTTGTATGGT+TGG - chr8_2:46453861-46453880 Msa1250730:intron 35.0%
GAACACACGATATTTGATCA+TGG - chr8_2:46453943-46453962 Msa1250730:intron 35.0%
CGATATTTGATCATGGAGTT+CGG - chr8_2:46453950-46453969 Msa1250730:intron 35.0%
TAGTTTACTGATATGTGGGT+AGG + chr8_2:46454114-46454133 None:intergenic 35.0%
AAACCAAAACGAACTTGCAA+AGG - chr8_2:46454202-46454221 Msa1250730:intron 35.0%
! ATTCCTTTGCAAGTTCGTTT+TGG + chr8_2:46454208-46454227 None:intergenic 35.0%
GATTTCAAGATTGCATCAAC+AGG + chr8_2:46454337-46454356 None:intergenic 35.0%
TTATGACGTGATGATATCAC+AGG - chr8_2:46454375-46454394 Msa1250730:intron 35.0%
ATGTGTATTACCACTCTCTT+CGG - chr8_2:46454422-46454441 Msa1250730:CDS 35.0%
GATTGCACAGATATATATGC+TGG - chr8_2:46454753-46454772 Msa1250730:intron 35.0%
AGCAAAAATGACACACATGT+TGG - chr8_2:46454844-46454863 Msa1250730:intron 35.0%
!! ATTTTTCCTTGGTGTGCTTA+AGG + chr8_2:46454883-46454902 None:intergenic 35.0%
AAACTGTACTCAACCATACA+AGG + chr8_2:46454980-46454999 None:intergenic 35.0%
GGCTATATTTGTGTATGACT+AGG - chr8_2:46455018-46455037 Msa1250730:intron 35.0%
TTGGAAGGAAGTGGAATATA+AGG - chr8_2:46455066-46455085 Msa1250730:five_prime_UTR 35.0%
TCATGGCATTCACATGTAAA+AGG + chr8_2:46455104-46455123 None:intergenic 35.0%
TACATGTGAATGCCATGATA+AGG - chr8_2:46455106-46455125 Msa1250730:five_prime_UTR 35.0%
CGACAACTATAACCTTATCA+TGG + chr8_2:46455121-46455140 None:intergenic 35.0%
GTCGGTAAAGTTAGCATATA+TGG - chr8_2:46455137-46455156 Msa1250730:five_prime_UTR 35.0%
TGGGAATTATCTTCCAAGAA+TGG - chr8_2:46455190-46455209 Msa1250730:five_prime_UTR 35.0%
GTTTGGATAAAATGCCACTG+GGG + chr8_2:46451233-46451252 None:intergenic 40.0%
CTGTTTGGATAAAATGCCAC+TGG + chr8_2:46451235-46451254 None:intergenic 40.0%
TGTTTGACTCTTCTGCTGTT+TGG + chr8_2:46451250-46451269 None:intergenic 40.0%
GAAAAGAAAGGTCTTCCAGT+TGG - chr8_2:46451889-46451908 Msa1250730:CDS 40.0%
AAGTTGCACTATTCTTGACG+TGG - chr8_2:46451924-46451943 Msa1250730:CDS 40.0%
TTTCGACACAACAGATTCCA+TGG + chr8_2:46451983-46452002 None:intergenic 40.0%
GGAATCTGTTGTGTCGAAAA+CGG - chr8_2:46451984-46452003 Msa1250730:CDS 40.0%
CAATGTCTAGCAGCAATTTC+AGG + chr8_2:46452632-46452651 None:intergenic 40.0%
ACTATAGGACTGTAGCATAG+TGG + chr8_2:46452871-46452890 None:intergenic 40.0%
TTATGCTTCAGCTTCACTTG+GGG - chr8_2:46453131-46453150 Msa1250730:intron 40.0%
TTCCGCTGTTCTGATGAATT+AGG - chr8_2:46453211-46453230 Msa1250730:CDS 40.0%
GCTGTTCTGATGAATTAGGA+TGG - chr8_2:46453215-46453234 Msa1250730:CDS 40.0%
GCAAGATCATAACTCACTTG+TGG + chr8_2:46453244-46453263 None:intergenic 40.0%
TGTTGCAAATTCCAATGCCA+TGG - chr8_2:46453807-46453826 Msa1250730:intron 40.0%
AATTCCAATGCCATGGAAAG+TGG - chr8_2:46453814-46453833 Msa1250730:intron 40.0%
CAATCACTTACCACTTTCCA+TGG + chr8_2:46453827-46453846 None:intergenic 40.0%
GTGGTAAGTGATTGCGTTTA+TGG - chr8_2:46453833-46453852 Msa1250730:intron 40.0%
TCAAGGGTAATCTTGCAATC+TGG + chr8_2:46454075-46454094 None:intergenic 40.0%
! GAGATTTACAGCCTCTCTTT+TGG - chr8_2:46454522-46454541 Msa1250730:CDS 40.0%
! ATTTACAGCCTCTCTTTTGG+AGG - chr8_2:46454525-46454544 Msa1250730:CDS 40.0%
TACATACACAACCAGATGAC+AGG + chr8_2:46454610-46454629 None:intergenic 40.0%
TGCACAGATATATATGCTGG+TGG - chr8_2:46454756-46454775 Msa1250730:intron 40.0%
! GCATGTGTGACATTTTTCCT+TGG + chr8_2:46454894-46454913 None:intergenic 40.0%
AGGAAAAATGTCACACATGC+TGG - chr8_2:46454894-46454913 Msa1250730:intron 40.0%
ACTGTTGAGTCAACCTTGTA+TGG - chr8_2:46454964-46454983 Msa1250730:intron 40.0%
TTTCTTCAGTTGGAAGGAAG+TGG - chr8_2:46455057-46455076 Msa1250730:five_prime_UTR 40.0%
GTTTGGATAAAATGCCACTG+GGG + chr8_2:46451233-46451252 None:intergenic 40.0%
CTGTTTGGATAAAATGCCAC+TGG + chr8_2:46451235-46451254 None:intergenic 40.0%
TGTTTGACTCTTCTGCTGTT+TGG + chr8_2:46451250-46451269 None:intergenic 40.0%
GAAAAGAAAGGTCTTCCAGT+TGG - chr8_2:46451889-46451908 Msa1250730:CDS 40.0%
AAGTTGCACTATTCTTGACG+TGG - chr8_2:46451924-46451943 Msa1250730:CDS 40.0%
TTTCGACACAACAGATTCCA+TGG + chr8_2:46451983-46452002 None:intergenic 40.0%
GGAATCTGTTGTGTCGAAAA+CGG - chr8_2:46451984-46452003 Msa1250730:CDS 40.0%
CAATGTCTAGCAGCAATTTC+AGG + chr8_2:46452632-46452651 None:intergenic 40.0%
ACTATAGGACTGTAGCATAG+TGG + chr8_2:46452871-46452890 None:intergenic 40.0%
TTATGCTTCAGCTTCACTTG+GGG - chr8_2:46453131-46453150 Msa1250730:intron 40.0%
TTCCGCTGTTCTGATGAATT+AGG - chr8_2:46453211-46453230 Msa1250730:CDS 40.0%
GCTGTTCTGATGAATTAGGA+TGG - chr8_2:46453215-46453234 Msa1250730:CDS 40.0%
GCAAGATCATAACTCACTTG+TGG + chr8_2:46453244-46453263 None:intergenic 40.0%
TGTTGCAAATTCCAATGCCA+TGG - chr8_2:46453807-46453826 Msa1250730:intron 40.0%
AATTCCAATGCCATGGAAAG+TGG - chr8_2:46453814-46453833 Msa1250730:intron 40.0%
CAATCACTTACCACTTTCCA+TGG + chr8_2:46453827-46453846 None:intergenic 40.0%
GTGGTAAGTGATTGCGTTTA+TGG - chr8_2:46453833-46453852 Msa1250730:intron 40.0%
TCAAGGGTAATCTTGCAATC+TGG + chr8_2:46454075-46454094 None:intergenic 40.0%
! GAGATTTACAGCCTCTCTTT+TGG - chr8_2:46454522-46454541 Msa1250730:CDS 40.0%
! ATTTACAGCCTCTCTTTTGG+AGG - chr8_2:46454525-46454544 Msa1250730:CDS 40.0%
TACATACACAACCAGATGAC+AGG + chr8_2:46454610-46454629 None:intergenic 40.0%
TGCACAGATATATATGCTGG+TGG - chr8_2:46454756-46454775 Msa1250730:intron 40.0%
! GCATGTGTGACATTTTTCCT+TGG + chr8_2:46454894-46454913 None:intergenic 40.0%
AGGAAAAATGTCACACATGC+TGG - chr8_2:46454894-46454913 Msa1250730:intron 40.0%
ACTGTTGAGTCAACCTTGTA+TGG - chr8_2:46454964-46454983 Msa1250730:intron 40.0%
TTTCTTCAGTTGGAAGGAAG+TGG - chr8_2:46455057-46455076 Msa1250730:five_prime_UTR 40.0%
!! CTTCCAGTTGGTGTTACTCT+TGG - chr8_2:46451901-46451920 Msa1250730:CDS 45.0%
CTTCCAAGAGTAACACCAAC+TGG + chr8_2:46451907-46451926 None:intergenic 45.0%
! TCCTCAGCTTTATCAGACCA+TGG - chr8_2:46451963-46451982 Msa1250730:CDS 45.0%
TCCATGGTCTGATAAAGCTG+AGG + chr8_2:46451967-46451986 None:intergenic 45.0%
GAATCAAACCTGAGACCTCA+AGG - chr8_2:46452277-46452296 Msa1250730:intron 45.0%
CAATACGCAATTGACAGCAC+TGG + chr8_2:46452823-46452842 None:intergenic 45.0%
TATGCTTCAGCTTCACTTGG+GGG - chr8_2:46453132-46453151 Msa1250730:intron 45.0%
GCAAGTACCAATAGTCCTTG+AGG - chr8_2:46453386-46453405 Msa1250730:intron 45.0%
GTACCAATAGTCCTTGAGGA+TGG - chr8_2:46453390-46453409 Msa1250730:intron 45.0%
GAGAAATTCCTCCATCCTCA+AGG + chr8_2:46453404-46453423 None:intergenic 45.0%
AGGAATTTCTCGAACGAGAG+AGG - chr8_2:46453413-46453432 Msa1250730:intron 45.0%
CTTACCACTTTCCATGGCAT+TGG + chr8_2:46453821-46453840 None:intergenic 45.0%
GTTCGCTACAATCACAACCT+TGG - chr8_2:46453885-46453904 Msa1250730:intron 45.0%
! TTCCTTGGTGTGCTTAAGGT+TGG + chr8_2:46454879-46454898 None:intergenic 45.0%
!! CTTCCAGTTGGTGTTACTCT+TGG - chr8_2:46451901-46451920 Msa1250730:CDS 45.0%
CTTCCAAGAGTAACACCAAC+TGG + chr8_2:46451907-46451926 None:intergenic 45.0%
! TCCTCAGCTTTATCAGACCA+TGG - chr8_2:46451963-46451982 Msa1250730:CDS 45.0%
TCCATGGTCTGATAAAGCTG+AGG + chr8_2:46451967-46451986 None:intergenic 45.0%
GAATCAAACCTGAGACCTCA+AGG - chr8_2:46452277-46452296 Msa1250730:intron 45.0%
CAATACGCAATTGACAGCAC+TGG + chr8_2:46452823-46452842 None:intergenic 45.0%
TATGCTTCAGCTTCACTTGG+GGG - chr8_2:46453132-46453151 Msa1250730:intron 45.0%
GCAAGTACCAATAGTCCTTG+AGG - chr8_2:46453386-46453405 Msa1250730:intron 45.0%
GTACCAATAGTCCTTGAGGA+TGG - chr8_2:46453390-46453409 Msa1250730:intron 45.0%
GAGAAATTCCTCCATCCTCA+AGG + chr8_2:46453404-46453423 None:intergenic 45.0%
AGGAATTTCTCGAACGAGAG+AGG - chr8_2:46453413-46453432 Msa1250730:intron 45.0%
CTTACCACTTTCCATGGCAT+TGG + chr8_2:46453821-46453840 None:intergenic 45.0%
GTTCGCTACAATCACAACCT+TGG - chr8_2:46453885-46453904 Msa1250730:intron 45.0%
! TTCCTTGGTGTGCTTAAGGT+TGG + chr8_2:46454879-46454898 None:intergenic 45.0%
TCTCGTGTGGTTAGTGACAG+CGG + chr8_2:46451176-46451195 None:intergenic 50.0%
GTCACACTTCGTGAATTCCC+AGG - chr8_2:46451369-46451388 Msa1250730:three_prime_UTR 50.0%
TGCACTATTCTTGACGTGGC+TGG - chr8_2:46451928-46451947 Msa1250730:CDS 50.0%
ATTCTTGACGTGGCTGGTGA+TGG - chr8_2:46451934-46451953 Msa1250730:CDS 50.0%
TCAAACCTGAGACCTCAAGG+AGG - chr8_2:46452280-46452299 Msa1250730:intron 50.0%
!! GTGGTATTGGCTTGGGATCT+GGG + chr8_2:46452314-46452333 None:intergenic 50.0%
!! AGTGGTATTGGCTTGGGATC+TGG + chr8_2:46452315-46452334 None:intergenic 50.0%
GATCCCAAGCCAATACCACT+AGG - chr8_2:46452315-46452334 Msa1250730:intron 50.0%
!! TGGCCTAGTGGTATTGGCTT+GGG + chr8_2:46452321-46452340 None:intergenic 50.0%
!! TTGGCCTAGTGGTATTGGCT+TGG + chr8_2:46452322-46452341 None:intergenic 50.0%
!! TTGGGTTGGCCTAGTGGTAT+TGG + chr8_2:46452327-46452346 None:intergenic 50.0%
TGTCATAGGCCAACCCACTT+GGG + chr8_2:46452345-46452364 None:intergenic 50.0%
TTGTCATAGGCCAACCCACT+TGG + chr8_2:46452346-46452365 None:intergenic 50.0%
GCAGTTATGGCGGCGTTATA+GGG + chr8_2:46452982-46453001 None:intergenic 50.0%
AGCAGTTATGGCGGCGTTAT+AGG + chr8_2:46452983-46453002 None:intergenic 50.0%
CTGCAAGGTTTGCCATTGAG+CGG - chr8_2:46453167-46453186 Msa1250730:intron 50.0%
AAGGTTTGCCATTGAGCGGT+TGG - chr8_2:46453171-46453190 Msa1250730:intron 50.0%
! ATTTGCTGCCAACCGCTCAA+TGG + chr8_2:46453182-46453201 None:intergenic 50.0%
CCTCCATCCTCAAGGACTAT+TGG + chr8_2:46453396-46453415 None:intergenic 50.0%
CCAATAGTCCTTGAGGATGG+AGG - chr8_2:46453393-46453412 Msa1250730:intron 50.0%
TCGCGTGATCTGTAGCATGT+TGG - chr8_2:46453464-46453483 Msa1250730:intron 50.0%
TCGCTTGAGGTACGGTTCAA+GGG + chr8_2:46454091-46454110 None:intergenic 50.0%
ATATGTGGGTAGGTCGCTTG+AGG + chr8_2:46454104-46454123 None:intergenic 50.0%
GTGATGATATCACAGGACGC+AGG - chr8_2:46454382-46454401 Msa1250730:intron 50.0%
! TCTTCGGTTCGCAGAACAGA+AGG - chr8_2:46454438-46454457 Msa1250730:CDS 50.0%
! CTTCGGTTCGCAGAACAGAA+GGG - chr8_2:46454439-46454458 Msa1250730:CDS 50.0%
AGCAATGGCCTCCAAAAGAG+AGG + chr8_2:46454536-46454555 None:intergenic 50.0%
CACAACCAGATGACAGGACA+TGG + chr8_2:46454604-46454623 None:intergenic 50.0%
GACCAACCTTAAGCACACCA+AGG - chr8_2:46454874-46454893 Msa1250730:intron 50.0%
TCTCGTGTGGTTAGTGACAG+CGG + chr8_2:46451176-46451195 None:intergenic 50.0%
GTCACACTTCGTGAATTCCC+AGG - chr8_2:46451369-46451388 Msa1250730:three_prime_UTR 50.0%
TGCACTATTCTTGACGTGGC+TGG - chr8_2:46451928-46451947 Msa1250730:CDS 50.0%
ATTCTTGACGTGGCTGGTGA+TGG - chr8_2:46451934-46451953 Msa1250730:CDS 50.0%
TCAAACCTGAGACCTCAAGG+AGG - chr8_2:46452280-46452299 Msa1250730:intron 50.0%
!! GTGGTATTGGCTTGGGATCT+GGG + chr8_2:46452314-46452333 None:intergenic 50.0%
!! AGTGGTATTGGCTTGGGATC+TGG + chr8_2:46452315-46452334 None:intergenic 50.0%
GATCCCAAGCCAATACCACT+AGG - chr8_2:46452315-46452334 Msa1250730:intron 50.0%
!! TGGCCTAGTGGTATTGGCTT+GGG + chr8_2:46452321-46452340 None:intergenic 50.0%
!! TTGGCCTAGTGGTATTGGCT+TGG + chr8_2:46452322-46452341 None:intergenic 50.0%
!! TTGGGTTGGCCTAGTGGTAT+TGG + chr8_2:46452327-46452346 None:intergenic 50.0%
TGTCATAGGCCAACCCACTT+GGG + chr8_2:46452345-46452364 None:intergenic 50.0%
TTGTCATAGGCCAACCCACT+TGG + chr8_2:46452346-46452365 None:intergenic 50.0%
GCAGTTATGGCGGCGTTATA+GGG + chr8_2:46452982-46453001 None:intergenic 50.0%
AGCAGTTATGGCGGCGTTAT+AGG + chr8_2:46452983-46453002 None:intergenic 50.0%
CTGCAAGGTTTGCCATTGAG+CGG - chr8_2:46453167-46453186 Msa1250730:intron 50.0%
AAGGTTTGCCATTGAGCGGT+TGG - chr8_2:46453171-46453190 Msa1250730:intron 50.0%
! ATTTGCTGCCAACCGCTCAA+TGG + chr8_2:46453182-46453201 None:intergenic 50.0%
CCTCCATCCTCAAGGACTAT+TGG + chr8_2:46453396-46453415 None:intergenic 50.0%
CCAATAGTCCTTGAGGATGG+AGG - chr8_2:46453393-46453412 Msa1250730:intron 50.0%
TCGCGTGATCTGTAGCATGT+TGG - chr8_2:46453464-46453483 Msa1250730:intron 50.0%
TCGCTTGAGGTACGGTTCAA+GGG + chr8_2:46454091-46454110 None:intergenic 50.0%
ATATGTGGGTAGGTCGCTTG+AGG + chr8_2:46454104-46454123 None:intergenic 50.0%
GTGATGATATCACAGGACGC+AGG - chr8_2:46454382-46454401 Msa1250730:intron 50.0%
! TCTTCGGTTCGCAGAACAGA+AGG - chr8_2:46454438-46454457 Msa1250730:CDS 50.0%
! CTTCGGTTCGCAGAACAGAA+GGG - chr8_2:46454439-46454458 Msa1250730:CDS 50.0%
AGCAATGGCCTCCAAAAGAG+AGG + chr8_2:46454536-46454555 None:intergenic 50.0%
CACAACCAGATGACAGGACA+TGG + chr8_2:46454604-46454623 None:intergenic 50.0%
GACCAACCTTAAGCACACCA+AGG - chr8_2:46454874-46454893 Msa1250730:intron 50.0%
CTCGTGTGGTTAGTGACAGC+GGG + chr8_2:46451175-46451194 None:intergenic 55.0%
CCACAGTCGTGTTTCTCGTG+TGG + chr8_2:46451189-46451208 None:intergenic 55.0%
CCACACGAGAAACACGACTG+TGG - chr8_2:46451186-46451205 Msa1250730:three_prime_UTR 55.0%
TACCACTAGGCCAACCCAAG+TGG - chr8_2:46452328-46452347 Msa1250730:intron 55.0%
ACCACTAGGCCAACCCAAGT+GGG - chr8_2:46452329-46452348 Msa1250730:intron 55.0%
ATAGGCCAACCCACTTGGGT+TGG + chr8_2:46452341-46452360 None:intergenic 55.0%
CTTCACTTGGGGGTGAACAG+TGG - chr8_2:46453142-46453161 Msa1250730:intron 55.0%
GTCGGAGACGTAGGCACAAT+TGG + chr8_2:46453976-46453995 None:intergenic 55.0%
TACTGCAGCAGCTCTGCAGT+CGG + chr8_2:46453994-46454013 None:intergenic 55.0%
GTCGCTTGAGGTACGGTTCA+AGG + chr8_2:46454092-46454111 None:intergenic 55.0%
TGGGTAGGTCGCTTGAGGTA+CGG + chr8_2:46454099-46454118 None:intergenic 55.0%
GTTCTGCGAACCGAAGAGAG+TGG + chr8_2:46454435-46454454 None:intergenic 55.0%
GACTGCCATGTCCTGTCATC+TGG - chr8_2:46454596-46454615 Msa1250730:CDS 55.0%
CTCGTGTGGTTAGTGACAGC+GGG + chr8_2:46451175-46451194 None:intergenic 55.0%
CCACAGTCGTGTTTCTCGTG+TGG + chr8_2:46451189-46451208 None:intergenic 55.0%
CCACACGAGAAACACGACTG+TGG - chr8_2:46451186-46451205 Msa1250730:three_prime_UTR 55.0%
TACCACTAGGCCAACCCAAG+TGG - chr8_2:46452328-46452347 Msa1250730:intron 55.0%
ACCACTAGGCCAACCCAAGT+GGG - chr8_2:46452329-46452348 Msa1250730:intron 55.0%
ATAGGCCAACCCACTTGGGT+TGG + chr8_2:46452341-46452360 None:intergenic 55.0%
CTTCACTTGGGGGTGAACAG+TGG - chr8_2:46453142-46453161 Msa1250730:intron 55.0%
GTCGGAGACGTAGGCACAAT+TGG + chr8_2:46453976-46453995 None:intergenic 55.0%
TACTGCAGCAGCTCTGCAGT+CGG + chr8_2:46453994-46454013 None:intergenic 55.0%
GTCGCTTGAGGTACGGTTCA+AGG + chr8_2:46454092-46454111 None:intergenic 55.0%
TGGGTAGGTCGCTTGAGGTA+CGG + chr8_2:46454099-46454118 None:intergenic 55.0%
GTTCTGCGAACCGAAGAGAG+TGG + chr8_2:46454435-46454454 None:intergenic 55.0%
GACTGCCATGTCCTGTCATC+TGG - chr8_2:46454596-46454615 Msa1250730:CDS 55.0%
GTGCTCCTCCTTGAGGTCTC+AGG + chr8_2:46452288-46452307 None:intergenic 60.0%
! TGGGAGTGTGCTCCTCCTTG+AGG + chr8_2:46452295-46452314 None:intergenic 60.0%
!! ACCCACTTGGGTTGGCCTAG+TGG + chr8_2:46452333-46452352 None:intergenic 60.0%
CTAGGCCAACCCAAGTGGGT+TGG - chr8_2:46452333-46452352 Msa1250730:intron 60.0%
GGGTGAACAGTGGAGCTGCA+AGG - chr8_2:46453152-46453171 Msa1250730:intron 60.0%
AGCTCTGCAGTCGGAGACGT+AGG + chr8_2:46453985-46454004 None:intergenic 60.0%
GTGCTCCTCCTTGAGGTCTC+AGG + chr8_2:46452288-46452307 None:intergenic 60.0%
! TGGGAGTGTGCTCCTCCTTG+AGG + chr8_2:46452295-46452314 None:intergenic 60.0%
!! ACCCACTTGGGTTGGCCTAG+TGG + chr8_2:46452333-46452352 None:intergenic 60.0%
CTAGGCCAACCCAAGTGGGT+TGG - chr8_2:46452333-46452352 Msa1250730:intron 60.0%
GGGTGAACAGTGGAGCTGCA+AGG - chr8_2:46453152-46453171 Msa1250730:intron 60.0%
AGCTCTGCAGTCGGAGACGT+AGG + chr8_2:46453985-46454004 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 46451172 46455261 46451172 ID=Msa1250730;Name=Msa1250730
chr8_2 mRNA 46451172 46455261 46451172 ID=Msa1250730-mRNA-1;Parent=Msa1250730;Name=Msa1250730-mRNA-1;_AED=0.03;_eAED=0.03;_QI=283|1|1|1|0.75|0.6|5|694|218
chr8_2 exon 46451172 46452108 46451172 ID=Msa1250730-mRNA-1:exon:13972;Parent=Msa1250730-mRNA-1
chr8_2 exon 46452999 46453046 46452999 ID=Msa1250730-mRNA-1:exon:13971;Parent=Msa1250730-mRNA-1
chr8_2 exon 46453187 46453291 46453187 ID=Msa1250730-mRNA-1:exon:13970;Parent=Msa1250730-mRNA-1
chr8_2 exon 46454398 46454722 46454398 ID=Msa1250730-mRNA-1:exon:13969;Parent=Msa1250730-mRNA-1
chr8_2 exon 46455043 46455261 46455043 ID=Msa1250730-mRNA-1:exon:13968;Parent=Msa1250730-mRNA-1
chr8_2 five_prime_UTR 46455043 46455261 46455043 ID=Msa1250730-mRNA-1:five_prime_utr;Parent=Msa1250730-mRNA-1
chr8_2 five_prime_UTR 46454659 46454722 46454659 ID=Msa1250730-mRNA-1:five_prime_utr;Parent=Msa1250730-mRNA-1
chr8_2 CDS 46454398 46454658 46454398 ID=Msa1250730-mRNA-1:cds;Parent=Msa1250730-mRNA-1
chr8_2 CDS 46453187 46453291 46453187 ID=Msa1250730-mRNA-1:cds;Parent=Msa1250730-mRNA-1
chr8_2 CDS 46452999 46453046 46452999 ID=Msa1250730-mRNA-1:cds;Parent=Msa1250730-mRNA-1
chr8_2 CDS 46451866 46452108 46451866 ID=Msa1250730-mRNA-1:cds;Parent=Msa1250730-mRNA-1
chr8_2 three_prime_UTR 46451172 46451865 46451172 ID=Msa1250730-mRNA-1:three_prime_utr;Parent=Msa1250730-mRNA-1
Gene Sequence

>Msa1250730

ATGGGATCTGAAGGGCCAAAGAAAATTACAATTCATGTAACTGGGTTTAAGAAGTTTCAAGGAGTGCCAATAAACCCTACAGAGATTATTGTTAATAATCTGAGGGATTATGTTGAAAAGAAAGGTCTTCCAGTTGGTGTTACTCTTGGAAGTTGCACTATTCTTGACGTGGCTGGTGATGGTGCACTTCCTCAGCTTTATCAGACCATGGAATCTGTTGTGTCGAAAACGGATACAGAGAGTAATTCAAATGTTGTTTGGCTTCACTTGGGGGTGAACAGTGGAGCTGCAAGGTTTGCCATTGAGCGGTTGGCAGCAAATGAAGCTACTTTCCGCTGTTCTGATGAATTAGGATGGCAACCACAACAAGTACCAATAGTCCTTGAGGATGGAGGAATTTCTCGAACGAGAGAGACTTCTCTGCCTGTTGATGCAATCTTGAAATCCTTGAAAAAGGGAAAAGATTATGACGTGATGATATCACAGGACGCAGGACGATTTGTTTGCAATTATGTGTATTACCACTCTCTTCGGTTCGCAGAACAGAAGGGTAACAAGTCTCTATTTGTTCATGTTCCCTTATTTTCGAGAATCGATGAAGAAACTCAGATGAGATTTACAGCCTCTCTTTTGGAGGCCATTGCTTCTGCATGTTAA

Protein sequence

>Msa1250730

MGSEGPKKITIHVTGFKKFQGVPINPTEIIVNNLRDYVEKKGLPVGVTLGSCTILDVAGDGALPQLYQTMESVVSKTDTESNSNVVWLHLGVNSGAARFAIERLAANEATFRCSDELGWQPQQVPIVLEDGGISRTRETSLPVDAILKSLKKGKDYDVMISQDAGRFVCNYVYYHSLRFAEQKGNKSLFVHVPLFSRIDEETQMRFTASLLEAIASAC*