AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0130520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130520 MtrunA17_Chr1g0198811 96.795 312 10 0 1 312 1 312 0.0 626
Msa0130520 MtrunA17_Chr2g0313071 30.000 200 121 5 11 205 8 193 4.11e-21 91.7
Msa0130520 MtrunA17_Chr8g0336491 30.000 200 121 5 11 205 8 193 1.20e-20 90.5
Msa0130520 MtrunA17_Chr6g0480801 70.370 54 11 1 32 85 44 92 3.08e-20 84.7
Msa0130520 MtrunA17_Chr1g0186371 29.000 200 121 6 11 205 8 191 9.56e-18 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130520 AT1G25682.1 72.669 311 82 2 1 311 1 308 3.50e-169 472
Msa0130520 AT1G25682.2 72.669 311 82 2 1 311 1 308 3.50e-169 472
Msa0130520 AT1G25988.1 74.359 78 20 0 103 180 27 104 1.51e-35 127
Msa0130520 AT1G17130.1 28.502 207 129 5 11 212 8 200 5.89e-19 86.3
Msa0130520 AT1G17130.2 27.570 214 129 5 11 212 8 207 4.77e-18 83.6
Msa0130520 AT3G43250.1 33.945 109 58 3 11 117 8 104 1.93e-13 69.3

Find 94 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAGGGTATCTTGATTATA+AGG 0.255625 1_3:-60861114 Msa0130520:intron
GACGGGCAATCCAGGGAATA+TGG 0.258001 1_3:+60859155 None:intergenic
ATCACATACTCACAGTTCTT+TGG 0.264942 1_3:+60859955 None:intergenic
AGCGCAGATTCTGTCTTTGC+TGG 0.275432 1_3:-60858597 Msa0130520:three_prime_UTR
CTTCCATCACACATTATATA+TGG 0.293729 1_3:+60858800 None:intergenic
TGGTGTTCAAGGCGGTAAAA+TGG 0.307792 1_3:+60859556 None:intergenic
ACCTGGCTTGGATCCCATTC+TGG 0.311079 1_3:+60861276 None:intergenic
TTGAGATGCCTTATAATATA+TGG 0.313340 1_3:-60860640 Msa0130520:CDS
CCTCCGCACCATATATTATA+AGG 0.317386 1_3:+60860632 None:intergenic
TTTCTAGTGTCTTGCATTCA+TGG 0.318374 1_3:+60858984 None:intergenic
ACCTTACATCAAAATCAAAA+TGG 0.347608 1_3:-60862153 Msa0130520:intron
GAGAGCAAGGAAGTTAGATC+AGG 0.349867 1_3:-60861131 Msa0130520:CDS
TCTACAGCATGCAGCTTTCA+TGG 0.350388 1_3:+60860002 None:intergenic
AAGCGCAGCATCTAGCCTTT+TGG 0.353767 1_3:-60859073 Msa0130520:CDS
TACATAGAAATTGCTTGATA+AGG 0.361493 1_3:-60858899 Msa0130520:three_prime_UTR
AATTCTTAGTTATTCATTTG+TGG 0.370030 1_3:-60858750 Msa0130520:three_prime_UTR
CAAGTAACATACTCTAAGTT+TGG 0.373219 1_3:+60859423 None:intergenic
GAAATGAATTATGAAGATTT+CGG 0.395989 1_3:+60858669 None:intergenic
AATCTTCCTCCTGGTGTTCA+AGG 0.398061 1_3:+60859545 None:intergenic
GCATCTAGGAAAAGGGGCCT+TGG 0.407781 1_3:-60859291 Msa0130520:CDS
GGCATAGTCTTCCGAATGTC+TGG 0.414464 1_3:+60859465 None:intergenic
ATGGATGAGACGGGCAATCC+AGG 0.417753 1_3:+60859147 None:intergenic
ATTCTTAGTTATTCATTTGT+GGG 0.421608 1_3:-60858749 Msa0130520:three_prime_UTR
GGTTCTCTGAACAAGTTTCA+TGG 0.426891 1_3:-60861172 Msa0130520:CDS
GCTTCTTCTCTGCATTGAAC+CGG 0.428388 1_3:+60860582 None:intergenic
ATCGTGATTAAGGAGTTTCC+TGG 0.448222 1_3:+60862280 None:intergenic
GTTCTTTGGATCAGTTTGAA+TGG 0.451321 1_3:+60859969 None:intergenic
CATCTAGGAAAAGGGGCCTT+GGG 0.455684 1_3:-60859290 Msa0130520:CDS
AGATTTCGGTGATAAAGAAC+CGG 0.457500 1_3:+60858683 None:intergenic
TGTTCTGTCAAGCAGGCAAA+AGG 0.461856 1_3:-60859013 Msa0130520:CDS
CGCTGGAGACGCACAAGCAC+TGG 0.464581 1_3:+60859499 None:intergenic
AAGAAGCTGCATCTAGGAAA+AGG 0.464590 1_3:-60859299 Msa0130520:CDS
ACAATCCAGCTACATGAAAA+CGG 0.469567 1_3:+60858708 None:intergenic
AGAAGCTGCATCTAGGAAAA+GGG 0.469824 1_3:-60859298 Msa0130520:CDS
CTATGATTGCAAAGGGTGTC+CGG 0.472676 1_3:-60860601 Msa0130520:CDS
ATGCAGAGAAGAAGCAAGTT+GGG 0.475460 1_3:-60860574 Msa0130520:CDS
GCACGCAAATATACCTGGCT+TGG 0.482555 1_3:+60861264 None:intergenic
AATGTCTGATGCCAGACATT+CGG 0.487929 1_3:-60859476 Msa0130520:CDS
GTCTGGCATCAGACATTCGC+TGG 0.492170 1_3:+60859482 None:intergenic
CAATCCAGCTACATGAAAAC+GGG 0.493128 1_3:+60858709 None:intergenic
GCGCAGATTCTGTCTTTGCT+GGG 0.494537 1_3:-60858596 Msa0130520:three_prime_UTR
ACGGGCAATCCAGGGAATAT+GGG 0.497967 1_3:+60859156 None:intergenic
TCATGTAGCTGGATTGTGCC+CGG 0.501061 1_3:-60858702 Msa0130520:three_prime_UTR
GCAGCATCTTGTTCTGAAGC+TGG 0.501516 1_3:+60859255 None:intergenic
GAAAGCTGCATGCTGTAGAC+AGG 0.504885 1_3:-60859998 Msa0130520:CDS
AATGCTGCTCCCATATTCCC+TGG 0.508968 1_3:-60859165 Msa0130520:CDS
CTGAAGAAGAAGCTGCATCT+AGG 0.513065 1_3:-60859305 Msa0130520:CDS
TCCAGAATGGGATCCAAGCC+AGG 0.514395 1_3:-60861277 Msa0130520:intron
CAGCCTTCTCTTACCAGACA+TGG 0.522667 1_3:+60859128 None:intergenic
GTTTATACCCTCCAGCCAAA+AGG 0.523272 1_3:+60859058 None:intergenic
TTGCCCGTCTCATCCATGTC+TGG 0.524578 1_3:-60859141 Msa0130520:CDS
GAGGGTATAAACCGTCATCT+TGG 0.526453 1_3:-60859047 Msa0130520:CDS
TGCAATTCTATGATTGCAAA+GGG 0.527726 1_3:-60860608 Msa0130520:CDS
TTCGAGTTACCTGCTGATGA+AGG 0.528478 1_3:-60859877 Msa0130520:intron
AGAATTCAACTTTGTCGAAG+TGG 0.530862 1_3:+60858767 None:intergenic
AATGCAGAGAAGAAGCAAGT+TGG 0.531409 1_3:-60860575 Msa0130520:CDS
TAAACCGTCATCTTGGTCAC+AGG 0.534179 1_3:-60859040 Msa0130520:CDS
AGGGAGCTGTTCTGTCAAGC+AGG 0.536545 1_3:-60859020 Msa0130520:CDS
CTTCCTTGCTCTCTCTCTCA+AGG 0.536908 1_3:+60861141 None:intergenic
TTCATTTGTGGGTTAGACAC+CGG 0.542042 1_3:-60858738 Msa0130520:three_prime_UTR
TCATGCACACCTTCATCAGC+AGG 0.543966 1_3:+60859868 None:intergenic
AAATTTGTGTTACAGAGAGA+GGG 0.546667 1_3:-60859591 Msa0130520:intron
AACATACTCTAAGTTTGGCC+CGG 0.552541 1_3:+60859428 None:intergenic
CATGTCTGGTAAGAGAAGGC+TGG 0.552595 1_3:-60859127 Msa0130520:CDS
AGCAAAGACAGAATCTGCGC+TGG 0.554978 1_3:+60858599 None:intergenic
TGGATGAGACGGGCAATCCA+GGG 0.561142 1_3:+60859148 None:intergenic
GAACTTCACTTTCGCTGCTG+CGG 0.562222 1_3:+60859233 None:intergenic
GTTCTGTCAAGCAGGCAAAA+GGG 0.575210 1_3:-60859012 Msa0130520:CDS
ATGCCTTGAGAGAGAGAGCA+AGG 0.581873 1_3:-60861144 Msa0130520:CDS
ATGCAATTCTATGATTGCAA+AGG 0.583657 1_3:-60860609 Msa0130520:CDS
TCGTGATTAAGGAGTTTCCT+GGG 0.587929 1_3:+60862281 None:intergenic
ATCTGCTCTAGCAGCTGCAA+GGG 0.592187 1_3:+60861314 None:intergenic
TATCTGCTCTAGCAGCTGCA+AGG 0.592633 1_3:+60861313 None:intergenic
CTTACCAGACATGGATGAGA+CGG 0.598118 1_3:+60859137 None:intergenic
CATCCATGTCTGGTAAGAGA+AGG 0.598795 1_3:-60859131 Msa0130520:CDS
GATTAAGGAGTTTCCTGGGT+CGG 0.606509 1_3:+60862285 None:intergenic
TAATCAAAATATTCCGACCC+AGG 0.610298 1_3:-60862298 Msa0130520:five_prime_UTR
TTACCAGACATGGATGAGAC+GGG 0.611020 1_3:+60859138 None:intergenic
AGAGCAAGGAAGTTAGATCA+GGG 0.613858 1_3:-60861130 Msa0130520:CDS
GAAGCTGCATCTAGGAAAAG+GGG 0.615335 1_3:-60859297 Msa0130520:CDS
GATTTCGGTGATAAAGAACC+GGG 0.615687 1_3:+60858684 None:intergenic
AAGCCATATATAATGTGTGA+TGG 0.616717 1_3:-60858803 Msa0130520:three_prime_UTR
GTGAGTATGTGATCATCAGT+GGG 0.620162 1_3:-60859945 Msa0130520:CDS
CCTTATAATATATGGTGCGG+AGG 0.625854 1_3:-60860632 Msa0130520:CDS
GCTCCCTGTGACCAAGATGA+CGG 0.632091 1_3:+60859036 None:intergenic
ATGCCTTATAATATATGGTG+CGG 0.650909 1_3:-60860635 Msa0130520:CDS
CTGGAAGCAGTCGAATCCCA+AGG 0.652032 1_3:+60859274 None:intergenic
AAACCGTCATCTTGGTCACA+GGG 0.655559 1_3:-60859039 Msa0130520:CDS
TGTGAGTATGTGATCATCAG+TGG 0.657354 1_3:-60859946 Msa0130520:CDS
TGGCTTGGATCCCATTCTGG+AGG 0.660594 1_3:+60861279 None:intergenic
CTTCCTCCTGGTGTTCAAGG+CGG 0.672392 1_3:+60859548 None:intergenic
TTACCGCCTTGAACACCAGG+AGG 0.712713 1_3:-60859551 Msa0130520:CDS
TGGGAATTACTACTCTACGA+AGG 0.715974 1_3:-60860555 Msa0130520:intron
TGAGTATGTGATCATCAGTG+GGG 0.814262 1_3:-60859944 Msa0130520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCTCTTTTTAATTTTTTT+TGG - chr1_3:60858772-60858791 Msa0130520:three_prime_UTR 10.0%
!!! TTTTTCATTTTTTTAAACAA+AGG - chr1_3:60860417-60860436 Msa0130520:intron 10.0%
!!! TTAAATTCTAGTTTTGATTA+TGG - chr1_3:60858879-60858898 Msa0130520:three_prime_UTR 15.0%
!! ATTAGATAATATGGAATAAA+AGG + chr1_3:60860215-60860234 None:intergenic 15.0%
!!! TATATGTACATATATTGATT+TGG - chr1_3:60861074-60861093 Msa0130520:intron 15.0%
!! CATCAAATTTATCAGAATTA+GGG - chr1_3:60858803-60858822 Msa0130520:three_prime_UTR 20.0%
!!! TTTTAAATCCATTTTTCCTA+TGG + chr1_3:60859059-60859078 None:intergenic 20.0%
!!! ATTTTATAAGTTATACGACA+TGG - chr1_3:60859100-60859119 Msa0130520:CDS 20.0%
!!! ATCTTTTAAAACCATGTATT+GGG + chr1_3:60859202-60859221 None:intergenic 20.0%
!!! TATCTTTTAAAACCATGTAT+TGG + chr1_3:60859203-60859222 None:intergenic 20.0%
!!! AAGTGTTTAATTTCTATTGT+CGG - chr1_3:60859431-60859450 Msa0130520:intron 20.0%
!!! ATCATAATGGATCATTAAAT+TGG + chr1_3:60860036-60860055 None:intergenic 20.0%
!! ACACTTGAAAATAATATGTA+AGG + chr1_3:60860647-60860666 None:intergenic 20.0%
!! ACACTTGAAAATAATATGTA+AGG + chr1_3:60860647-60860666 None:intergenic 20.0%
!!! AAAGCATTAAACTTGTTAAA+GGG + chr1_3:60861202-60861221 None:intergenic 20.0%
!!! AAAAGCATTAAACTTGTTAA+AGG + chr1_3:60861203-60861222 None:intergenic 20.0%
!! AGATTTGAAAAAAAAGAAAC+AGG - chr1_3:60861364-60861383 Msa0130520:intron 20.0%
!!! TCTTTATAATGCAGTTTTTT+TGG - chr1_3:60862016-60862035 Msa0130520:intron 20.0%
!!! CTTTATAATGCAGTTTTTTT+GGG - chr1_3:60862017-60862036 Msa0130520:intron 20.0%
!! AATTCTTAGTTATTCATTTG+TGG - chr1_3:60862141-60862160 Msa0130520:intron 20.0%
!! ATTCTTAGTTATTCATTTGT+GGG - chr1_3:60862142-60862161 Msa0130520:intron 20.0%
!! GAAATGAATTATGAAGATTT+CGG + chr1_3:60862225-60862244 None:intergenic 20.0%
! GAAAAACAAAATCGTGATTA+AGG + chr1_3:60858624-60858643 None:intergenic 25.0%
! ACCTTACATCAAAATCAAAA+TGG - chr1_3:60858738-60858757 Msa0130520:three_prime_UTR 25.0%
!!! ACCATTTTGATTTTGATGTA+AGG + chr1_3:60858742-60858761 None:intergenic 25.0%
! GCATCAAATTTATCAGAATT+AGG - chr1_3:60858802-60858821 Msa0130520:three_prime_UTR 25.0%
! ATTTATCAGAATTAGGGTTA+AGG - chr1_3:60858809-60858828 Msa0130520:three_prime_UTR 25.0%
! GATGATATATTCTTCATGAA+TGG - chr1_3:60858844-60858863 Msa0130520:three_prime_UTR 25.0%
!!! TAGTTTTGATTATGGTTTGA+TGG - chr1_3:60858887-60858906 Msa0130520:three_prime_UTR 25.0%
! ATATTACAGTATTTCACCAT+AGG - chr1_3:60859040-60859059 Msa0130520:CDS 25.0%
! TTAAAACTGATACACAAGTA+TGG - chr1_3:60859073-60859092 Msa0130520:CDS 25.0%
! TAAAACTGATACACAAGTAT+GGG - chr1_3:60859074-60859093 Msa0130520:CDS 25.0%
!!! TCTTTTAAAACCATGTATTG+GGG + chr1_3:60859201-60859220 None:intergenic 25.0%
!! TAGATTATGTTGCTTGATTA+TGG - chr1_3:60859221-60859240 Msa0130520:CDS 25.0%
!! AGATTATGTTGCTTGATTAT+GGG - chr1_3:60859222-60859241 Msa0130520:CDS 25.0%
! ACATGTAATATGAGTACTTA+TGG - chr1_3:60859396-60859415 Msa0130520:intron 25.0%
!! TAACTTGTATGTATTTGATG+TGG - chr1_3:60859494-60859513 Msa0130520:CDS 25.0%
! CAAATGCAAGTTAAGTTTAT+TGG + chr1_3:60859539-60859558 None:intergenic 25.0%
!!! TATGAAGACAAATGGATTAA+TGG + chr1_3:60859845-60859864 None:intergenic 25.0%
! TAATGAGTTATGAAGACAAA+TGG + chr1_3:60859853-60859872 None:intergenic 25.0%
! TACAGAGAATAAAGGATTTA+CGG + chr1_3:60859894-60859913 None:intergenic 25.0%
! TAGCATATTACAGAGAATAA+AGG + chr1_3:60859902-60859921 None:intergenic 25.0%
! ATATGCTAAATGAAACAATG+TGG - chr1_3:60859914-60859933 Msa0130520:CDS 25.0%
! TAAAATAAAATAGCCCAGAT+TGG + chr1_3:60860189-60860208 None:intergenic 25.0%
! AGAATGGTCATTAGATAATA+TGG + chr1_3:60860224-60860243 None:intergenic 25.0%
! TTGAGATGCCTTATAATATA+TGG - chr1_3:60860251-60860270 Msa0130520:intron 25.0%
!!! GAAGCATCTAATGTTTATTT+TGG - chr1_3:60860377-60860396 Msa0130520:intron 25.0%
!!! TCATTTTTTTAAACAAAGGC+AGG - chr1_3:60860421-60860440 Msa0130520:intron 25.0%
! AAGTTGAAAAAAGTTTGTCA+TGG + chr1_3:60860551-60860570 None:intergenic 25.0%
! AATCACTATTAGACTATAAC+TGG + chr1_3:60860614-60860633 None:intergenic 25.0%
! AATCACTATTAGACTATAAC+TGG + chr1_3:60860614-60860633 None:intergenic 25.0%
! TAATCATTAACGTGTTTATC+TGG - chr1_3:60860843-60860862 Msa0130520:intron 25.0%
!!! CTTTTGACTCTAAGAAAATA+GGG + chr1_3:60861556-60861575 None:intergenic 25.0%
!!! TCTTTTGACTCTAAGAAAAT+AGG + chr1_3:60861557-60861576 None:intergenic 25.0%
! CTAGTAAGTTTGACAAAAAT+AGG - chr1_3:60861682-60861701 Msa0130520:intron 25.0%
! TAAGTTTGACAAAAATAGGA+AGG - chr1_3:60861686-60861705 Msa0130520:intron 25.0%
! TACATAGAAATTGCTTGATA+AGG - chr1_3:60861992-60862011 Msa0130520:intron 25.0%
!!! GTCGGAATATTTTGATTATC+TGG + chr1_3:60858591-60858610 None:intergenic 30.0%
!! TCTGATTGAGAAAGTTTTGT+TGG + chr1_3:60858661-60858680 None:intergenic 30.0%
! TTGATGGATGATCAAATTGA+TGG - chr1_3:60858903-60858922 Msa0130520:three_prime_UTR 30.0%
!! TGGATGTTTTATGTTGATTG+TGG - chr1_3:60858923-60858942 Msa0130520:three_prime_UTR 30.0%
!! ATGTTTTATGTTGATTGTGG+AGG - chr1_3:60858926-60858945 Msa0130520:three_prime_UTR 30.0%
GTATTTCACCATAGGAAAAA+TGG - chr1_3:60859048-60859067 Msa0130520:CDS 30.0%
AAAACTGATACACAAGTATG+GGG - chr1_3:60859075-60859094 Msa0130520:CDS 30.0%
TCACAACAACAAAGAATTCA+TGG - chr1_3:60859141-60859160 Msa0130520:CDS 30.0%
! TTGAAGGAAAGAGCTTTTAT+GGG + chr1_3:60859176-60859195 None:intergenic 30.0%
! ATTGAAGGAAAGAGCTTTTA+TGG + chr1_3:60859177-60859196 None:intergenic 30.0%
! GATTATGTTGCTTGATTATG+GGG - chr1_3:60859223-60859242 Msa0130520:CDS 30.0%
! TCTAGTAGATTTTAAATGCC+TGG - chr1_3:60859317-60859336 Msa0130520:CDS 30.0%
! CTAGTAGATTTTAAATGCCT+GGG - chr1_3:60859318-60859337 Msa0130520:CDS 30.0%
ATGAGTACTTATGGATATCT+TGG - chr1_3:60859405-60859424 Msa0130520:intron 30.0%
! ATCAGGGTATCTTGATTATA+AGG - chr1_3:60859777-60859796 Msa0130520:intron 30.0%
AACTCATTTCTGACTATTCT+AGG + chr1_3:60859957-60859976 None:intergenic 30.0%
AATGATCCATTATGATCGAA+AGG - chr1_3:60860040-60860059 Msa0130520:intron 30.0%
ATGATCCATTATGATCGAAA+GGG - chr1_3:60860041-60860060 Msa0130520:intron 30.0%
TATCTAATGACCATTCTTTC+AGG - chr1_3:60860227-60860246 Msa0130520:intron 30.0%
ATGCCTTATAATATATGGTG+CGG - chr1_3:60860256-60860275 Msa0130520:intron 30.0%
ATGCAATTCTATGATTGCAA+AGG - chr1_3:60860282-60860301 Msa0130520:intron 30.0%
TGCAATTCTATGATTGCAAA+GGG - chr1_3:60860283-60860302 Msa0130520:intron 30.0%
TTAATGCACTGCATTATCTT+GGG - chr1_3:60860782-60860801 Msa0130520:intron 30.0%
TTGAACCACACTATTTAGAT+TGG + chr1_3:60860809-60860828 None:intergenic 30.0%
ATGCTATTGCATCTTTCAAT+TGG - chr1_3:60861124-60861143 Msa0130520:CDS 30.0%
AAAATTTGTGTTACAGAGAG+AGG - chr1_3:60861299-60861318 Msa0130520:CDS 30.0%
AAATTTGTGTTACAGAGAGA+GGG - chr1_3:60861300-60861319 Msa0130520:CDS 30.0%
!!! TTTTTTTCAAATCTTCCTCC+TGG + chr1_3:60861358-60861377 None:intergenic 30.0%
ATGCCCTAAATAAAAATCTC+CGG - chr1_3:60861444-60861463 Msa0130520:intron 30.0%
CAAGTAACATACTCTAAGTT+TGG + chr1_3:60861471-60861490 None:intergenic 30.0%
TCTAAGAAAATAGGGAAAAG+GGG + chr1_3:60861548-60861567 None:intergenic 30.0%
! CTCTAAGAAAATAGGGAAAA+GGG + chr1_3:60861549-60861568 None:intergenic 30.0%
! ACTCTAAGAAAATAGGGAAA+AGG + chr1_3:60861550-60861569 None:intergenic 30.0%
!!! TTGTCAGTCACTTTTGATTT+TGG - chr1_3:60861951-60861970 Msa0130520:intron 30.0%
!! TTTTGGGAGCTTAATATAGA+TGG - chr1_3:60862033-60862052 Msa0130520:intron 30.0%
AAGCCATATATAATGTGTGA+TGG - chr1_3:60862088-60862107 Msa0130520:intron 30.0%
CTTCCATCACACATTATATA+TGG + chr1_3:60862094-60862113 None:intergenic 30.0%
TAATCAAAATATTCCGACCC+AGG - chr1_3:60858593-60858612 Msa0130520:three_prime_UTR 35.0%
AGGGTTAAGGATCAAATTGA+TGG - chr1_3:60858822-60858841 Msa0130520:three_prime_UTR 35.0%
!! GAGAGTGTTGAAGAATTTGA+CGG - chr1_3:60859259-60859278 Msa0130520:CDS 35.0%
! TAGATTTTAAATGCCTGGGT+GGG - chr1_3:60859322-60859341 Msa0130520:CDS 35.0%
! ACTTTTACTTTCCTCCAGAA+TGG - chr1_3:60859601-60859620 Msa0130520:intron 35.0%
! CTTTTACTTTCCTCCAGAAT+GGG - chr1_3:60859602-60859621 Msa0130520:intron 35.0%
ACACTATATTTCCTCCTTTC+AGG - chr1_3:60859697-60859716 Msa0130520:intron 35.0%
CACTATATTTCCTCCTTTCA+GGG - chr1_3:60859698-60859717 Msa0130520:intron 35.0%
GAGAATAAAGGATTTACGGT+AGG + chr1_3:60859890-60859909 None:intergenic 35.0%
ACTATCCCTTTCGATCATAA+TGG + chr1_3:60860049-60860068 None:intergenic 35.0%
AGGGATAGTCTACTTTATGT+AGG - chr1_3:60860060-60860079 Msa0130520:intron 35.0%
GGGATAGTCTACTTTATGTA+GGG - chr1_3:60860061-60860080 Msa0130520:intron 35.0%
GGATAGTCTACTTTATGTAG+GGG - chr1_3:60860062-60860081 Msa0130520:intron 35.0%
AAAATAGCCCAGATTGGAAA+AGG + chr1_3:60860183-60860202 None:intergenic 35.0%
GTTAATGCACTGCATTATCT+TGG - chr1_3:60860781-60860800 Msa0130520:intron 35.0%
TATCTGGATACATGCAGATA+TGG - chr1_3:60860859-60860878 Msa0130520:intron 35.0%
GTTCTTTGGATCAGTTTGAA+TGG + chr1_3:60860925-60860944 None:intergenic 35.0%
ATCACATACTCACAGTTCTT+TGG + chr1_3:60860939-60860958 None:intergenic 35.0%
!! AACTGAGGATTTTGATGTTG+AGG - chr1_3:60860980-60860999 Msa0130520:intron 35.0%
ATAGCATGTCTCAAACTACT+GGG + chr1_3:60861111-60861130 None:intergenic 35.0%
AATAGCATGTCTCAAACTAC+TGG + chr1_3:60861112-60861131 None:intergenic 35.0%
AAGTTTGCCTTTGAACCTTT+GGG - chr1_3:60861148-60861167 Msa0130520:CDS 35.0%
AATCCATAGAAAACAGCTGT+TGG + chr1_3:60861175-60861194 None:intergenic 35.0%
! TAGTAACTGATTCACTATCG+TGG - chr1_3:60861252-60861271 Msa0130520:intron 35.0%
TGCCCTAAATAAAAATCTCC+GGG - chr1_3:60861445-60861464 Msa0130520:intron 35.0%
CTAAGAAAATAGGGAAAAGG+GGG + chr1_3:60861547-60861566 None:intergenic 35.0%
ACAAAAATAGGAAGGACAAG+CGG - chr1_3:60861694-60861713 Msa0130520:intron 35.0%
! TTTCTAGTGTCTTGCATTCA+TGG + chr1_3:60861910-60861929 None:intergenic 35.0%
AGAATTCAACTTTGTCGAAG+TGG + chr1_3:60862127-60862146 None:intergenic 35.0%
ACAATCCAGCTACATGAAAA+CGG + chr1_3:60862186-60862205 None:intergenic 35.0%
AGATTTCGGTGATAAAGAAC+CGG + chr1_3:60862211-60862230 None:intergenic 35.0%
TCGTGATTAAGGAGTTTCCT+GGG + chr1_3:60858613-60858632 None:intergenic 40.0%
ATCGTGATTAAGGAGTTTCC+TGG + chr1_3:60858614-60858633 None:intergenic 40.0%
ATTCGTGGGATGTGTAATTC+AGG - chr1_3:60858961-60858980 Msa0130520:three_prime_UTR 40.0%
!! AGAGCTTTTATGGGTTGTGA+TGG + chr1_3:60859167-60859186 None:intergenic 40.0%
GGTAGTAATACACACACTCA+CGG - chr1_3:60859280-60859299 Msa0130520:CDS 40.0%
! GTAGATTTTAAATGCCTGGG+TGG - chr1_3:60859321-60859340 Msa0130520:CDS 40.0%
! AGATTTTAAATGCCTGGGTG+GGG - chr1_3:60859323-60859342 Msa0130520:CDS 40.0%
CCACATAGAGACAAAGATCA+GGG + chr1_3:60859458-60859477 None:intergenic 40.0%
TCCACATAGAGACAAAGATC+AGG + chr1_3:60859459-60859478 None:intergenic 40.0%
TTGTTGCACGCAAATATACC+TGG + chr1_3:60859635-60859654 None:intergenic 40.0%
GGTTCTCTGAACAAGTTTCA+TGG - chr1_3:60859719-60859738 Msa0130520:intron 40.0%
AGAGCAAGGAAGTTAGATCA+GGG - chr1_3:60859761-60859780 Msa0130520:intron 40.0%
CTACTTACTGGCGTGTTATA+TGG - chr1_3:60860087-60860106 Msa0130520:intron 40.0%
GCATCTCAAACCTGAAAGAA+TGG + chr1_3:60860240-60860259 None:intergenic 40.0%
CCTCCGCACCATATATTATA+AGG + chr1_3:60860262-60860281 None:intergenic 40.0%
CCTTATAATATATGGTGCGG+AGG - chr1_3:60860259-60860278 Msa0130520:intron 40.0%
AATGCAGAGAAGAAGCAAGT+TGG - chr1_3:60860316-60860335 Msa0130520:intron 40.0%
ATGCAGAGAAGAAGCAAGTT+GGG - chr1_3:60860317-60860336 Msa0130520:intron 40.0%
TGGGAATTACTACTCTACGA+AGG - chr1_3:60860336-60860355 Msa0130520:intron 40.0%
! ACAAGTTTGTTCACATGAGC+AGG + chr1_3:60860457-60860476 None:intergenic 40.0%
TGGGACCAATCTAAATAGTG+TGG - chr1_3:60860801-60860820 Msa0130520:intron 40.0%
TGTGAGTATGTGATCATCAG+TGG - chr1_3:60860945-60860964 Msa0130520:intron 40.0%
GTGAGTATGTGATCATCAGT+GGG - chr1_3:60860946-60860965 Msa0130520:intron 40.0%
TGAGTATGTGATCATCAGTG+GGG - chr1_3:60860947-60860966 Msa0130520:intron 40.0%
TAGCATGTCTCAAACTACTG+GGG + chr1_3:60861110-60861129 None:intergenic 40.0%
CAAGTTTGCCTTTGAACCTT+TGG - chr1_3:60861147-60861166 Msa0130520:CDS 40.0%
TTAAGCACAGTTGCAATGCT+AGG + chr1_3:60861229-60861248 None:intergenic 40.0%
AATGTCTGATGCCAGACATT+CGG - chr1_3:60861415-60861434 Msa0130520:intron 40.0%
!! GGCCCGGAGATTTTTATTTA+GGG + chr1_3:60861450-60861469 None:intergenic 40.0%
!! TGGCCCGGAGATTTTTATTT+AGG + chr1_3:60861451-60861470 None:intergenic 40.0%
AACATACTCTAAGTTTGGCC+CGG + chr1_3:60861466-60861485 None:intergenic 40.0%
AAGAAGCTGCATCTAGGAAA+AGG - chr1_3:60861592-60861611 Msa0130520:intron 40.0%
AGAAGCTGCATCTAGGAAAA+GGG - chr1_3:60861593-60861612 Msa0130520:intron 40.0%
CAAAAATAGGAAGGACAAGC+GGG - chr1_3:60861695-60861714 Msa0130520:intron 40.0%
!! TTCATTTGTGGGTTAGACAC+CGG - chr1_3:60862153-60862172 Msa0130520:intron 40.0%
! ACATGAAAACGGGACTTTTC+CGG + chr1_3:60862175-60862194 None:intergenic 40.0%
CAATCCAGCTACATGAAAAC+GGG + chr1_3:60862185-60862204 None:intergenic 40.0%
GATTTCGGTGATAAAGAACC+GGG + chr1_3:60862210-60862229 None:intergenic 40.0%
GATTAAGGAGTTTCCTGGGT+CGG + chr1_3:60858609-60858628 None:intergenic 45.0%
! ATGTTGATTGTGGAGGAGCT+TGG - chr1_3:60858933-60858952 Msa0130520:three_prime_UTR 45.0%
AGGAGCTTGGAGTAAATTCG+TGG - chr1_3:60858946-60858965 Msa0130520:three_prime_UTR 45.0%
GGAGCTTGGAGTAAATTCGT+GGG - chr1_3:60858947-60858966 Msa0130520:three_prime_UTR 45.0%
TCCTTCAATGCCCCAATACA+TGG - chr1_3:60859188-60859207 Msa0130520:CDS 45.0%
!! ACCATGTATTGGGGCATTGA+AGG + chr1_3:60859192-60859211 None:intergenic 45.0%
TTGCTTGATTATGGGGTGAG+TGG - chr1_3:60859230-60859249 Msa0130520:CDS 45.0%
CCCTGATCTTTGTCTCTATG+TGG - chr1_3:60859455-60859474 Msa0130520:CDS 45.0%
CTTGTTCAGAGAACCCTGAA+AGG + chr1_3:60859714-60859733 None:intergenic 45.0%
GAGAGCAAGGAAGTTAGATC+AGG - chr1_3:60859760-60859779 Msa0130520:intron 45.0%
!! TATGTAGGGGTGCTACTTAC+TGG - chr1_3:60860075-60860094 Msa0130520:intron 45.0%
ATAGCCCAGATTGGAAAAGG+AGG + chr1_3:60860180-60860199 None:intergenic 45.0%
!! CTATGATTGCAAAGGGTGTC+CGG - chr1_3:60860290-60860309 Msa0130520:intron 45.0%
GCTTCTTCTCTGCATTGAAC+CGG + chr1_3:60860312-60860331 None:intergenic 45.0%
TCTACAGCATGCAGCTTTCA+TGG + chr1_3:60860892-60860911 None:intergenic 45.0%
TGGGGCTCAGAAAAAAACTG+AGG - chr1_3:60860965-60860984 Msa0130520:intron 45.0%
! TTCGAGTTACCTGCTGATGA+AGG - chr1_3:60861014-60861033 Msa0130520:intron 45.0%
TGTTGGACCCAAAGGTTCAA+AGG + chr1_3:60861158-60861177 None:intergenic 45.0%
AAAACAGCTGTTGGACCCAA+AGG + chr1_3:60861166-60861185 None:intergenic 45.0%
!! GGTCCAACAGCTGTTTTCTA+TGG - chr1_3:60861169-60861188 Msa0130520:CDS 45.0%
TGGTGTTCAAGGCGGTAAAA+TGG + chr1_3:60861338-60861357 None:intergenic 45.0%
! ATTTTACCGCCTTGAACACC+AGG - chr1_3:60861337-60861356 Msa0130520:intron 45.0%
AATCTTCCTCCTGGTGTTCA+AGG + chr1_3:60861349-60861368 None:intergenic 45.0%
CTGAAGAAGAAGCTGCATCT+AGG - chr1_3:60861586-60861605 Msa0130520:intron 45.0%
GAAGCTGCATCTAGGAAAAG+GGG - chr1_3:60861594-60861613 Msa0130520:intron 45.0%
TTACCAGACATGGATGAGAC+GGG + chr1_3:60861756-60861775 None:intergenic 45.0%
CTTACCAGACATGGATGAGA+CGG + chr1_3:60861757-60861776 None:intergenic 45.0%
CATCCATGTCTGGTAAGAGA+AGG - chr1_3:60861760-60861779 Msa0130520:intron 45.0%
GTTTATACCCTCCAGCCAAA+AGG + chr1_3:60861836-60861855 None:intergenic 45.0%
! GAGGGTATAAACCGTCATCT+TGG - chr1_3:60861844-60861863 Msa0130520:intron 45.0%
TAAACCGTCATCTTGGTCAC+AGG - chr1_3:60861851-60861870 Msa0130520:intron 45.0%
AAACCGTCATCTTGGTCACA+GGG - chr1_3:60861852-60861871 Msa0130520:intron 45.0%
TGTTCTGTCAAGCAGGCAAA+AGG - chr1_3:60861878-60861897 Msa0130520:intron 45.0%
GTTCTGTCAAGCAGGCAAAA+GGG - chr1_3:60861879-60861898 Msa0130520:intron 45.0%
! AAGTCCCGTTTTCATGTAGC+TGG - chr1_3:60862178-60862197 Msa0130520:five_prime_UTR 45.0%
! TTTTAAATGCCTGGGTGGGG+AGG - chr1_3:60859326-60859345 Msa0130520:CDS 50.0%
TTTAAATGCCTGGGTGGGGA+GGG - chr1_3:60859327-60859346 Msa0130520:CDS 50.0%
ATCTGCTCTAGCAGCTGCAA+GGG + chr1_3:60859580-60859599 None:intergenic 50.0%
TATCTGCTCTAGCAGCTGCA+AGG + chr1_3:60859581-60859600 None:intergenic 50.0%
GCACGCAAATATACCTGGCT+TGG + chr1_3:60859630-60859649 None:intergenic 50.0%
GTTCAGAGAACCCTGAAAGG+AGG + chr1_3:60859711-60859730 None:intergenic 50.0%
ATGCCTTGAGAGAGAGAGCA+AGG - chr1_3:60859747-60859766 Msa0130520:intron 50.0%
CTTCCTTGCTCTCTCTCTCA+AGG + chr1_3:60859753-60859772 None:intergenic 50.0%
CTTGAAAGAGCTGAACCAGC+TGG - chr1_3:60860154-60860173 Msa0130520:intron 50.0%
! CTGGCCTCCTTTTCCAATCT+GGG - chr1_3:60860173-60860192 Msa0130520:intron 50.0%
GAAAGCTGCATGCTGTAGAC+AGG - chr1_3:60860893-60860912 Msa0130520:intron 50.0%
TCATGCACACCTTCATCAGC+AGG + chr1_3:60861026-60861045 None:intergenic 50.0%
GGCATAGTCTTCCGAATGTC+TGG + chr1_3:60861429-60861448 None:intergenic 50.0%
CATCTAGGAAAAGGGGCCTT+GGG - chr1_3:60861601-60861620 Msa0130520:intron 50.0%
!! GCAGCATCTTGTTCTGAAGC+TGG + chr1_3:60861639-60861658 None:intergenic 50.0%
GAACTTCACTTTCGCTGCTG+CGG + chr1_3:60861661-60861680 None:intergenic 50.0%
AATGCTGCTCCCATATTCCC+TGG - chr1_3:60861726-60861745 Msa0130520:intron 50.0%
ACGGGCAATCCAGGGAATAT+GGG + chr1_3:60861738-60861757 None:intergenic 50.0%
CAGCCTTCTCTTACCAGACA+TGG + chr1_3:60861766-60861785 None:intergenic 50.0%
CATGTCTGGTAAGAGAAGGC+TGG - chr1_3:60861764-60861783 Msa0130520:intron 50.0%
!! AAGCGCAGCATCTAGCCTTT+TGG - chr1_3:60861818-60861837 Msa0130520:intron 50.0%
!! CATCTAGCCTTTTGGCTGGA+GGG - chr1_3:60861826-60861845 Msa0130520:intron 50.0%
TCATGTAGCTGGATTGTGCC+CGG - chr1_3:60862189-60862208 Msa0130520:five_prime_UTR 50.0%
AGCAAAGACAGAATCTGCGC+TGG + chr1_3:60862295-60862314 None:intergenic 50.0%
AGCGCAGATTCTGTCTTTGC+TGG - chr1_3:60862294-60862313 Msa0130520:five_prime_UTR 50.0%
GCGCAGATTCTGTCTTTGCT+GGG - chr1_3:60862295-60862314 Msa0130520:five_prime_UTR 50.0%
ATTATGGGGTGAGTGGCGCT+AGG - chr1_3:60859237-60859256 Msa0130520:CDS 55.0%
! TGGCTTGGATCCCATTCTGG+AGG + chr1_3:60859615-60859634 None:intergenic 55.0%
TCCAGAATGGGATCCAAGCC+AGG - chr1_3:60859614-60859633 Msa0130520:intron 55.0%
!! ACCTGGCTTGGATCCCATTC+TGG + chr1_3:60859618-60859637 None:intergenic 55.0%
GCAGCTACTAAGCGACAGTG+TGG - chr1_3:60859819-60859838 Msa0130520:intron 55.0%
GATTGGAAAAGGAGGCCAGC+TGG + chr1_3:60860172-60860191 None:intergenic 55.0%
!! GCTGGCCTCCTTTTCCAATC+TGG - chr1_3:60860172-60860191 Msa0130520:intron 55.0%
TTACCGCCTTGAACACCAGG+AGG - chr1_3:60861340-60861359 Msa0130520:intron 55.0%
CTTCCTCCTGGTGTTCAAGG+CGG + chr1_3:60861346-60861365 None:intergenic 55.0%
GTCTGGCATCAGACATTCGC+TGG + chr1_3:60861412-60861431 None:intergenic 55.0%
GCATCTAGGAAAAGGGGCCT+TGG - chr1_3:60861600-60861619 Msa0130520:intron 55.0%
CTGGAAGCAGTCGAATCCCA+AGG + chr1_3:60861620-60861639 None:intergenic 55.0%
GACGGGCAATCCAGGGAATA+TGG + chr1_3:60861739-60861758 None:intergenic 55.0%
TGGATGAGACGGGCAATCCA+GGG + chr1_3:60861746-60861765 None:intergenic 55.0%
ATGGATGAGACGGGCAATCC+AGG + chr1_3:60861747-60861766 None:intergenic 55.0%
TTGCCCGTCTCATCCATGTC+TGG - chr1_3:60861750-60861769 Msa0130520:intron 55.0%
!! GCAGCATCTAGCCTTTTGGC+TGG - chr1_3:60861822-60861841 Msa0130520:intron 55.0%
!! GCATCTAGCCTTTTGGCTGG+AGG - chr1_3:60861825-60861844 Msa0130520:intron 55.0%
GCTCCCTGTGACCAAGATGA+CGG + chr1_3:60861858-60861877 None:intergenic 55.0%
AGGGAGCTGTTCTGTCAAGC+AGG - chr1_3:60861871-60861890 Msa0130520:intron 55.0%
CGCTGGAGACGCACAAGCAC+TGG + chr1_3:60861395-60861414 None:intergenic 65.0%
TGCCTGGGTGGGGAGGGAGT+AGG - chr1_3:60859333-60859352 Msa0130520:intron 70.0%
GCCTGGGTGGGGAGGGAGTA+GGG - chr1_3:60859334-60859353 Msa0130520:intron 70.0%
TCCCTACTCCCTCCCCACCC+AGG + chr1_3:60859338-60859357 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 60858582 60862331 60858582 ID=Msa0130520;Name=Msa0130520
chr1_3 mRNA 60858582 60862331 60858582 ID=Msa0130520-mRNA-1;Parent=Msa0130520;Name=Msa0130520-mRNA-1;_AED=0.01;_eAED=0.01;_QI=175|1|1|1|0.83|0.85|7|405|312
chr1_3 exon 60858582 60859346 60858582 ID=Msa0130520-mRNA-1:exon:20077;Parent=Msa0130520-mRNA-1
chr1_3 exon 60859435 60859598 60859435 ID=Msa0130520-mRNA-1:exon:20076;Parent=Msa0130520-mRNA-1
chr1_3 exon 60859878 60860037 60859878 ID=Msa0130520-mRNA-1:exon:20075;Parent=Msa0130520-mRNA-1
chr1_3 exon 60860556 60860664 60860556 ID=Msa0130520-mRNA-1:exon:20074;Parent=Msa0130520-mRNA-1
chr1_3 exon 60861115 60861194 60861115 ID=Msa0130520-mRNA-1:exon:20073;Parent=Msa0130520-mRNA-1
chr1_3 exon 60861278 60861340 60861278 ID=Msa0130520-mRNA-1:exon:20072;Parent=Msa0130520-mRNA-1
chr1_3 exon 60862154 60862331 60862154 ID=Msa0130520-mRNA-1:exon:20071;Parent=Msa0130520-mRNA-1
chr1_3 five_prime_UTR 60862157 60862331 60862157 ID=Msa0130520-mRNA-1:five_prime_utr;Parent=Msa0130520-mRNA-1
chr1_3 CDS 60862154 60862156 60862154 ID=Msa0130520-mRNA-1:cds;Parent=Msa0130520-mRNA-1
chr1_3 CDS 60861278 60861340 60861278 ID=Msa0130520-mRNA-1:cds;Parent=Msa0130520-mRNA-1
chr1_3 CDS 60861115 60861194 60861115 ID=Msa0130520-mRNA-1:cds;Parent=Msa0130520-mRNA-1
chr1_3 CDS 60860556 60860664 60860556 ID=Msa0130520-mRNA-1:cds;Parent=Msa0130520-mRNA-1
chr1_3 CDS 60859878 60860037 60859878 ID=Msa0130520-mRNA-1:cds;Parent=Msa0130520-mRNA-1
chr1_3 CDS 60859435 60859598 60859435 ID=Msa0130520-mRNA-1:cds;Parent=Msa0130520-mRNA-1
chr1_3 CDS 60858987 60859346 60858987 ID=Msa0130520-mRNA-1:cds;Parent=Msa0130520-mRNA-1
chr1_3 three_prime_UTR 60858582 60858986 60858582 ID=Msa0130520-mRNA-1:three_prime_utr;Parent=Msa0130520-mRNA-1
Gene Sequence

>Msa0130520

ATGTCGTCCCTTGCAGCTGCTAGAGCAGATAACTTTTACTTTCCTCCAGAATGGGATCCAAGCCAGGGTTCTCTGAACAAGTTTCATGGTCAACATGCCTTGAGAGAGAGAGCAAGGAAGTTAGATCAGGGTATCTTGATTATAAGGTTTGAGATGCCTTATAATATATGGTGCGGAGGATGCAATTCTATGATTGCAAAGGGTGTCCGGTTCAATGCAGAGAAGAAGCAAGTTGGGAATTACTACTCTACGAAGATATGGAGCTTTACCATGAAAGCTGCATGCTGTAGACAGGAGATCACCATTCAAACTGATCCAAAGAACTGTGAGTATGTGATCATCAGTGGGGCTCAGAAAAAAACTGAGGATTTTGATGTTGAGGATGCAGAAACTTTCGAGTTACCTGCTGATGAAGAGAGAGGGAAGCTTGCTGATCCATTTTACCGCCTTGAACACCAGGAGGAAGATTTGAAAAAAAAGAAACAGGCTGAACCAGTGCTTGTGCGTCTCCAGCGAATGTCTGATGCCAGACATTCGGAAGACTATGCCCTAAATAAAAATCTCCGGGCCAAACTTAGAAGTCAAAAGAAAAGAGTTGCTGAAGAAGAAGCTGCATCTAGGAAAAGGGGCCTTGGGATTCGACTGCTTCCAGCTTCAGAACAAGATGCTGCCGCAGCAGCGAAAGTGAAGTTCTCTAGTAAGTTTGACAAAAATAGGAAGGACAAGCGGGCATTGATCAATGCTGCTCCCATATTCCCTGGATTGCCCGTCTCATCCATGTCTGGTAAGAGAAGGCTGGAGCTAGAGTCTAAAAGAAGAAAAATTTCTGCAAGCGCAGCATCTAGCCTTTTGGCTGGAGGGTATAAACCGTCATCTTGGTCACAGGGAGCTGTTCTGTCAAGCAGGCAAAAGGGAGCTTCCATGAATGCAAGACACTAG

Protein sequence

>Msa0130520

MSSLAAARADNFYFPPEWDPSQGSLNKFHGQHALRERARKLDQGILIIRFEMPYNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKAACCRQEITIQTDPKNCEYVIISGAQKKTEDFDVEDAETFELPADEERGKLADPFYRLEHQEEDLKKKKQAEPVLVRLQRMSDARHSEDYALNKNLRAKLRSQKKRVAEEEAASRKRGLGIRLLPASEQDAAAAAKVKFSSKFDKNRKDKRALINAAPIFPGLPVSSMSGKRRLELESKRRKISASAASSLLAGGYKPSSWSQGAVLSSRQKGASMNARH*