Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112620 | KEH41328.1 | 85.656 | 244 | 35 | 0 | 1 | 244 | 1 | 244 | 2.27e-152 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112620 | sp|Q9M1K1|ORG2_ARATH | 40.637 | 251 | 134 | 6 | 1 | 240 | 1 | 247 | 1.39e-51 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112620 | A0A072VIS7 | 85.656 | 244 | 35 | 0 | 1 | 244 | 1 | 244 | 1.08e-152 | 434 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0112620 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0112620 | Msa0129850 | 0.802939 | 4.422483e-49 | -8.615850e-47 |
| Msa0112620 | Msa0177550 | 0.825257 | 5.174061e-54 | -8.615850e-47 |
| Msa0112620 | Msa0259110 | 0.830850 | 2.328465e-55 | -8.615850e-47 |
| Msa0112620 | Msa0259300 | 0.826203 | 3.086546e-54 | -8.615850e-47 |
| Msa0112620 | Msa0287720 | 0.808413 | 3.135464e-50 | -8.615850e-47 |
| Msa0112620 | Msa0342130 | 0.847229 | 1.319845e-59 | -8.615850e-47 |
| Msa0112620 | Msa0342160 | 0.813744 | 2.191971e-51 | -8.615850e-47 |
| Msa0112620 | Msa0418160 | 0.809834 | 1.555612e-50 | -8.615850e-47 |
| Msa0112620 | Msa0631700 | 0.808084 | 3.684449e-50 | -8.615850e-47 |
| Msa0112620 | Msa0670360 | 0.803078 | 4.138403e-49 | -8.615850e-47 |
| Msa0112620 | Msa0671490 | 0.814572 | 1.439256e-51 | -8.615850e-47 |
| Msa0112620 | Msa0941120 | 0.807878 | 4.075082e-50 | -8.615850e-47 |
| Msa0112620 | Msa1026050 | 0.801415 | 9.103122e-49 | -8.615850e-47 |
| Msa0112620 | Msa1061670 | 0.806664 | 7.370633e-50 | -8.615850e-47 |
| Msa0112620 | Msa1087380 | 0.802316 | 5.943331e-49 | -8.615850e-47 |
| Msa0112620 | Msa1341030 | 0.800209 | 1.604223e-48 | -8.615850e-47 |
| Msa0112620 | Msa1411550 | 0.811319 | 7.430361e-51 | -8.615850e-47 |
| Msa0112620 | Msa1456600 | 0.816608 | 5.067063e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112620 | MtrunA17_Chr1g0170581 | 85.246 | 244 | 36 | 0 | 1 | 244 | 1 | 244 | 7.60e-156 | 432 |
| Msa0112620 | MtrunA17_Chr1g0170591 | 86.066 | 244 | 26 | 1 | 1 | 244 | 1 | 236 | 2.23e-153 | 426 |
| Msa0112620 | MtrunA17_Chr1g0170571 | 82.114 | 246 | 36 | 1 | 1 | 246 | 1 | 238 | 2.77e-142 | 398 |
| Msa0112620 | MtrunA17_Chr7g0256671 | 68.333 | 180 | 55 | 2 | 63 | 241 | 64 | 242 | 4.83e-64 | 200 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112620 | AT3G56970.1 | 40.637 | 251 | 134 | 6 | 1 | 240 | 1 | 247 | 1.42e-52 | 171 |
| Msa0112620 | AT3G56980.1 | 39.560 | 273 | 115 | 6 | 1 | 242 | 1 | 254 | 1.16e-45 | 153 |
| Msa0112620 | AT2G41240.1 | 37.247 | 247 | 141 | 4 | 1 | 242 | 1 | 238 | 8.46e-42 | 143 |
| Msa0112620 | AT2G41240.2 | 36.842 | 247 | 141 | 5 | 1 | 242 | 1 | 237 | 2.30e-39 | 137 |
| Msa0112620 | AT5G04150.2 | 46.626 | 163 | 82 | 2 | 60 | 219 | 78 | 238 | 1.35e-36 | 129 |
| Msa0112620 | AT5G04150.1 | 44.324 | 185 | 95 | 4 | 60 | 239 | 78 | 259 | 3.19e-36 | 129 |
Find 43 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCACATGTTTATGTATTTC+TGG | 0.098207 | 1_3:-27733195 | None:intergenic |
| TGATGCTGGTTATGGGTTAT+TGG | 0.201953 | 1_3:-27732694 | None:intergenic |
| AGTACCATTTGATCAGAAAT+AGG | 0.267145 | 1_3:-27732913 | None:intergenic |
| CAACTTCTCGTTTAAAATAT+CGG | 0.270225 | 1_3:-27733624 | None:intergenic |
| CGAGAAGTTGTTATCAATAA+TGG | 0.272808 | 1_3:+27733637 | Msa0112620:CDS |
| GTTTCTTCATCTCAAACCTT+TGG | 0.309294 | 1_3:+27733456 | Msa0112620:CDS |
| ATGGATTCTGATGCTGGTTA+TGG | 0.337267 | 1_3:-27732702 | None:intergenic |
| CATAGCAAAATCTCAGATAA+TGG | 0.357726 | 1_3:-27733402 | None:intergenic |
| AGGACTCTTGAAATTGTTGC+TGG | 0.367920 | 1_3:-27733162 | None:intergenic |
| CCTCCAATGTTGTCAACAAC+TGG | 0.388693 | 1_3:+27732655 | Msa0112620:CDS |
| TCAATAGTGTCTTTGTAGAA+TGG | 0.399191 | 1_3:-27732721 | None:intergenic |
| TCTTCCTATTTCTGATCAAA+TGG | 0.404052 | 1_3:+27732909 | Msa0112620:CDS |
| ATGGGTTATTGGCTCTTCAA+AGG | 0.419323 | 1_3:-27732683 | None:intergenic |
| TCTTCATCTCAAACCTTTGG+AGG | 0.450222 | 1_3:+27733459 | Msa0112620:CDS |
| TGGATTCTGATGCTGGTTAT+GGG | 0.454435 | 1_3:-27732701 | None:intergenic |
| TGTAGAATGGATTCTGATGC+TGG | 0.456368 | 1_3:-27732708 | None:intergenic |
| GTTGTTATCAATAATGGAAA+AGG | 0.460271 | 1_3:+27733643 | Msa0112620:CDS |
| AAGAAACATTTAGCAACATA+AGG | 0.460296 | 1_3:-27733440 | None:intergenic |
| TTGCTATGTTTAGAAAATGA+TGG | 0.461428 | 1_3:+27733417 | Msa0112620:CDS |
| ATCTCAAACCTTTGGAGGGA+GGG | 0.471487 | 1_3:+27733464 | Msa0112620:CDS |
| TGGGTTATTGGCTCTTCAAA+GGG | 0.490732 | 1_3:-27732682 | None:intergenic |
| ATAATAACTTCATTTACTTG+TGG | 0.512712 | 1_3:-27733261 | None:intergenic |
| AAGAAACATAATTACAACTC+TGG | 0.515926 | 1_3:+27733303 | Msa0112620:CDS |
| ACAAATTATTCATCTTCTTG+CGG | 0.523820 | 1_3:-27732867 | None:intergenic |
| CTTCATCTCAAACCTTTGGA+GGG | 0.524238 | 1_3:+27733460 | Msa0112620:CDS |
| CCAGTTGTTGACAACATTGG+AGG | 0.526212 | 1_3:-27732655 | None:intergenic |
| CAATAATGGAAAAGGAAGGA+GGG | 0.549179 | 1_3:+27733651 | Msa0112620:CDS |
| CATCTCAAACCTTTGGAGGG+AGG | 0.551061 | 1_3:+27733463 | Msa0112620:CDS |
| TCAATAATGGAAAAGGAAGG+AGG | 0.551798 | 1_3:+27733650 | Msa0112620:CDS |
| CATGCCAAGGTCACTGCTTG+TGG | 0.551876 | 1_3:-27732806 | None:intergenic |
| CATCCAGTTGTTGACAACAT+TGG | 0.563901 | 1_3:-27732658 | None:intergenic |
| CAATCCACAAGCAGTGACCT+TGG | 0.569748 | 1_3:+27732802 | Msa0112620:CDS |
| GTAGAAGACCCTCCCTCCAA+AGG | 0.574235 | 1_3:-27733472 | None:intergenic |
| GTCACTGCTTGTGGATTGTG+AGG | 0.591686 | 1_3:-27732797 | None:intergenic |
| GAAATACATAAACATGTGGA+AGG | 0.601655 | 1_3:+27733198 | Msa0112620:CDS |
| CACAAGCAGTGACCTTGGCA+TGG | 0.603384 | 1_3:+27732807 | Msa0112620:CDS |
| TCTCAGATAATGGAATCTTG+TGG | 0.603687 | 1_3:-27733392 | None:intergenic |
| TTATCAATAATGGAAAAGGA+AGG | 0.604075 | 1_3:+27733647 | Msa0112620:CDS |
| CAGAAATAGGAAGAAGTGAA+CGG | 0.605298 | 1_3:-27732900 | None:intergenic |
| CAATGTTGTCAACAACTGGA+TGG | 0.624050 | 1_3:+27732659 | Msa0112620:CDS |
| ACCAGAAATACATAAACATG+TGG | 0.627789 | 1_3:+27733194 | Msa0112620:CDS |
| CAAGCTTCTTGACCATGCCA+AGG | 0.656633 | 1_3:-27732819 | None:intergenic |
| TCACTGCTTGTGGATTGTGA+GGG | 0.698792 | 1_3:-27732796 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAACTTCATTTACTTG+TGG | - | chr1_3:27733264-27733283 | None:intergenic | 20.0% |
| !! | ATAATAACTTCATTTACTTG+TGG | - | chr1_3:27733264-27733283 | None:intergenic | 20.0% |
| ! | ACAAATTATTCATCTTCTTG+CGG | - | chr1_3:27732870-27732889 | None:intergenic | 25.0% |
| ! | ACAATTAGAAACAGAAAGAA+GGG | - | chr1_3:27732947-27732966 | None:intergenic | 25.0% |
| !! | TCTAAAGTGATATCGAAAAA+CGG | - | chr1_3:27733063-27733082 | None:intergenic | 25.0% |
| !!! | GTATTTCTGGTATGTATTTT+AGG | - | chr1_3:27733185-27733204 | None:intergenic | 25.0% |
| ! | AAGAAACATAATTACAACTC+TGG | + | chr1_3:27733303-27733322 | Msa0112620:CDS | 25.0% |
| ! | TTGCTATGTTTAGAAAATGA+TGG | + | chr1_3:27733417-27733436 | Msa0112620:CDS | 25.0% |
| ! | AAGAAACATTTAGCAACATA+AGG | - | chr1_3:27733443-27733462 | None:intergenic | 25.0% |
| !! | TTTTCACAATGTGTAAATTC+AGG | + | chr1_3:27733538-27733557 | Msa0112620:intron | 25.0% |
| !! | AATTGATTAAAAGCTCCTTT+TGG | + | chr1_3:27733565-27733584 | Msa0112620:intron | 25.0% |
| !! | ATTGATTAAAAGCTCCTTTT+GGG | + | chr1_3:27733566-27733585 | Msa0112620:intron | 25.0% |
| !! | CAACTTCTCGTTTAAAATAT+CGG | - | chr1_3:27733627-27733646 | None:intergenic | 25.0% |
| !! | GTTGTTATCAATAATGGAAA+AGG | + | chr1_3:27733643-27733662 | Msa0112620:CDS | 25.0% |
| !! | TTATCAATAATGGAAAAGGA+AGG | + | chr1_3:27733647-27733666 | Msa0112620:CDS | 25.0% |
| ! | ACAAATTATTCATCTTCTTG+CGG | - | chr1_3:27732870-27732889 | None:intergenic | 25.0% |
| ! | ACAATTAGAAACAGAAAGAA+GGG | - | chr1_3:27732947-27732966 | None:intergenic | 25.0% |
| !! | TCTAAAGTGATATCGAAAAA+CGG | - | chr1_3:27733063-27733082 | None:intergenic | 25.0% |
| !!! | GTATTTCTGGTATGTATTTT+AGG | - | chr1_3:27733185-27733204 | None:intergenic | 25.0% |
| ! | AAGAAACATAATTACAACTC+TGG | + | chr1_3:27733303-27733322 | Msa0112620:CDS | 25.0% |
| ! | TTGCTATGTTTAGAAAATGA+TGG | + | chr1_3:27733417-27733436 | Msa0112620:CDS | 25.0% |
| ! | AAGAAACATTTAGCAACATA+AGG | - | chr1_3:27733443-27733462 | None:intergenic | 25.0% |
| !! | TTTTCACAATGTGTAAATTC+AGG | + | chr1_3:27733538-27733557 | Msa0112620:intron | 25.0% |
| !! | AATTGATTAAAAGCTCCTTT+TGG | + | chr1_3:27733565-27733584 | Msa0112620:intron | 25.0% |
| !! | ATTGATTAAAAGCTCCTTTT+GGG | + | chr1_3:27733566-27733585 | Msa0112620:intron | 25.0% |
| !! | CAACTTCTCGTTTAAAATAT+CGG | - | chr1_3:27733627-27733646 | None:intergenic | 25.0% |
| !! | GTTGTTATCAATAATGGAAA+AGG | + | chr1_3:27733643-27733662 | Msa0112620:CDS | 25.0% |
| !! | TTATCAATAATGGAAAAGGA+AGG | + | chr1_3:27733647-27733666 | Msa0112620:CDS | 25.0% |
| TCAATAGTGTCTTTGTAGAA+TGG | - | chr1_3:27732724-27732743 | None:intergenic | 30.0% | |
| !! | TCATTTTGATGATCAAGTAG+AGG | + | chr1_3:27732753-27732772 | Msa0112620:CDS | 30.0% |
| !! | TCTTCCTATTTCTGATCAAA+TGG | + | chr1_3:27732909-27732928 | Msa0112620:CDS | 30.0% |
| AGTACCATTTGATCAGAAAT+AGG | - | chr1_3:27732916-27732935 | None:intergenic | 30.0% | |
| GACAATTAGAAACAGAAAGA+AGG | - | chr1_3:27732948-27732967 | None:intergenic | 30.0% | |
| !!! | GTTTTGTTTTGACATGAGTA+TGG | + | chr1_3:27733015-27733034 | Msa0112620:intron | 30.0% |
| TTCGATATCACTTTAGATTG+TGG | + | chr1_3:27733066-27733085 | Msa0112620:intron | 30.0% | |
| ACCAGAAATACATAAACATG+TGG | + | chr1_3:27733194-27733213 | Msa0112620:CDS | 30.0% | |
| TCCACATGTTTATGTATTTC+TGG | - | chr1_3:27733198-27733217 | None:intergenic | 30.0% | |
| GAAATACATAAACATGTGGA+AGG | + | chr1_3:27733198-27733217 | Msa0112620:CDS | 30.0% | |
| ! | GTTTTATCGTTTCAACAAGT+AGG | + | chr1_3:27733325-27733344 | Msa0112620:CDS | 30.0% |
| CATAGCAAAATCTCAGATAA+TGG | - | chr1_3:27733405-27733424 | None:intergenic | 30.0% | |
| ! | CTTCTACAATTTGCATTTTC+AGG | + | chr1_3:27733488-27733507 | Msa0112620:CDS | 30.0% |
| CGAGAAGTTGTTATCAATAA+TGG | + | chr1_3:27733637-27733656 | Msa0112620:CDS | 30.0% | |
| TCAATAGTGTCTTTGTAGAA+TGG | - | chr1_3:27732724-27732743 | None:intergenic | 30.0% | |
| !! | TCATTTTGATGATCAAGTAG+AGG | + | chr1_3:27732753-27732772 | Msa0112620:CDS | 30.0% |
| !! | TCTTCCTATTTCTGATCAAA+TGG | + | chr1_3:27732909-27732928 | Msa0112620:CDS | 30.0% |
| AGTACCATTTGATCAGAAAT+AGG | - | chr1_3:27732916-27732935 | None:intergenic | 30.0% | |
| GACAATTAGAAACAGAAAGA+AGG | - | chr1_3:27732948-27732967 | None:intergenic | 30.0% | |
| !!! | GTTTTGTTTTGACATGAGTA+TGG | + | chr1_3:27733015-27733034 | Msa0112620:intron | 30.0% |
| TTCGATATCACTTTAGATTG+TGG | + | chr1_3:27733066-27733085 | Msa0112620:intron | 30.0% | |
| ACCAGAAATACATAAACATG+TGG | + | chr1_3:27733194-27733213 | Msa0112620:CDS | 30.0% | |
| TCCACATGTTTATGTATTTC+TGG | - | chr1_3:27733198-27733217 | None:intergenic | 30.0% | |
| GAAATACATAAACATGTGGA+AGG | + | chr1_3:27733198-27733217 | Msa0112620:CDS | 30.0% | |
| ! | GTTTTATCGTTTCAACAAGT+AGG | + | chr1_3:27733325-27733344 | Msa0112620:CDS | 30.0% |
| CATAGCAAAATCTCAGATAA+TGG | - | chr1_3:27733405-27733424 | None:intergenic | 30.0% | |
| ! | CTTCTACAATTTGCATTTTC+AGG | + | chr1_3:27733488-27733507 | Msa0112620:CDS | 30.0% |
| CGAGAAGTTGTTATCAATAA+TGG | + | chr1_3:27733637-27733656 | Msa0112620:CDS | 30.0% | |
| CAGAAATAGGAAGAAGTGAA+CGG | - | chr1_3:27732903-27732922 | None:intergenic | 35.0% | |
| !!! | TGTTTTGACATGAGTATGGT+TGG | + | chr1_3:27733019-27733038 | Msa0112620:intron | 35.0% |
| TATGGTTGGAATTTCCTAAC+AGG | + | chr1_3:27733033-27733052 | Msa0112620:intron | 35.0% | |
| ATGGTTGGAATTTCCTAACA+GGG | + | chr1_3:27733034-27733053 | Msa0112620:intron | 35.0% | |
| !! | TCTCAGATAATGGAATCTTG+TGG | - | chr1_3:27733395-27733414 | None:intergenic | 35.0% |
| GTTTCTTCATCTCAAACCTT+TGG | + | chr1_3:27733456-27733475 | Msa0112620:CDS | 35.0% | |
| ! | TCAATAATGGAAAAGGAAGG+AGG | + | chr1_3:27733650-27733669 | Msa0112620:CDS | 35.0% |
| ! | CAATAATGGAAAAGGAAGGA+GGG | + | chr1_3:27733651-27733670 | Msa0112620:CDS | 35.0% |
| CAGAAATAGGAAGAAGTGAA+CGG | - | chr1_3:27732903-27732922 | None:intergenic | 35.0% | |
| !!! | TGTTTTGACATGAGTATGGT+TGG | + | chr1_3:27733019-27733038 | Msa0112620:intron | 35.0% |
| TATGGTTGGAATTTCCTAAC+AGG | + | chr1_3:27733033-27733052 | Msa0112620:intron | 35.0% | |
| ATGGTTGGAATTTCCTAACA+GGG | + | chr1_3:27733034-27733053 | Msa0112620:intron | 35.0% | |
| !! | TCTCAGATAATGGAATCTTG+TGG | - | chr1_3:27733395-27733414 | None:intergenic | 35.0% |
| GTTTCTTCATCTCAAACCTT+TGG | + | chr1_3:27733456-27733475 | Msa0112620:CDS | 35.0% | |
| ! | TCAATAATGGAAAAGGAAGG+AGG | + | chr1_3:27733650-27733669 | Msa0112620:CDS | 35.0% |
| ! | CAATAATGGAAAAGGAAGGA+GGG | + | chr1_3:27733651-27733670 | Msa0112620:CDS | 35.0% |
| CATCCAGTTGTTGACAACAT+TGG | - | chr1_3:27732661-27732680 | None:intergenic | 40.0% | |
| CAATGTTGTCAACAACTGGA+TGG | + | chr1_3:27732659-27732678 | Msa0112620:CDS | 40.0% | |
| !! | TGGGTTATTGGCTCTTCAAA+GGG | - | chr1_3:27732685-27732704 | None:intergenic | 40.0% |
| !! | ATGGGTTATTGGCTCTTCAA+AGG | - | chr1_3:27732686-27732705 | None:intergenic | 40.0% |
| ! | TGATGCTGGTTATGGGTTAT+TGG | - | chr1_3:27732697-27732716 | None:intergenic | 40.0% |
| ! | TGGATTCTGATGCTGGTTAT+GGG | - | chr1_3:27732704-27732723 | None:intergenic | 40.0% |
| ! | ATGGATTCTGATGCTGGTTA+TGG | - | chr1_3:27732705-27732724 | None:intergenic | 40.0% |
| ! | TGTAGAATGGATTCTGATGC+TGG | - | chr1_3:27732711-27732730 | None:intergenic | 40.0% |
| AGGACTCTTGAAATTGTTGC+TGG | - | chr1_3:27733165-27733184 | None:intergenic | 40.0% | |
| TCTTCATCTCAAACCTTTGG+AGG | + | chr1_3:27733459-27733478 | Msa0112620:CDS | 40.0% | |
| CTTCATCTCAAACCTTTGGA+GGG | + | chr1_3:27733460-27733479 | Msa0112620:CDS | 40.0% | |
| CATCCAGTTGTTGACAACAT+TGG | - | chr1_3:27732661-27732680 | None:intergenic | 40.0% | |
| CAATGTTGTCAACAACTGGA+TGG | + | chr1_3:27732659-27732678 | Msa0112620:CDS | 40.0% | |
| !! | TGGGTTATTGGCTCTTCAAA+GGG | - | chr1_3:27732685-27732704 | None:intergenic | 40.0% |
| !! | ATGGGTTATTGGCTCTTCAA+AGG | - | chr1_3:27732686-27732705 | None:intergenic | 40.0% |
| ! | TGATGCTGGTTATGGGTTAT+TGG | - | chr1_3:27732697-27732716 | None:intergenic | 40.0% |
| ! | TGGATTCTGATGCTGGTTAT+GGG | - | chr1_3:27732704-27732723 | None:intergenic | 40.0% |
| ! | ATGGATTCTGATGCTGGTTA+TGG | - | chr1_3:27732705-27732724 | None:intergenic | 40.0% |
| ! | TGTAGAATGGATTCTGATGC+TGG | - | chr1_3:27732711-27732730 | None:intergenic | 40.0% |
| AGGACTCTTGAAATTGTTGC+TGG | - | chr1_3:27733165-27733184 | None:intergenic | 40.0% | |
| TCTTCATCTCAAACCTTTGG+AGG | + | chr1_3:27733459-27733478 | Msa0112620:CDS | 40.0% | |
| CTTCATCTCAAACCTTTGGA+GGG | + | chr1_3:27733460-27733479 | Msa0112620:CDS | 40.0% | |
| CCAGTTGTTGACAACATTGG+AGG | - | chr1_3:27732658-27732677 | None:intergenic | 45.0% | |
| CCTCCAATGTTGTCAACAAC+TGG | + | chr1_3:27732655-27732674 | Msa0112620:CDS | 45.0% | |
| ! | TCACTGCTTGTGGATTGTGA+GGG | - | chr1_3:27732799-27732818 | None:intergenic | 45.0% |
| ! | ATCTCAAACCTTTGGAGGGA+GGG | + | chr1_3:27733464-27733483 | Msa0112620:CDS | 45.0% |
| CCAGTTGTTGACAACATTGG+AGG | - | chr1_3:27732658-27732677 | None:intergenic | 45.0% | |
| CCTCCAATGTTGTCAACAAC+TGG | + | chr1_3:27732655-27732674 | Msa0112620:CDS | 45.0% | |
| ! | TCACTGCTTGTGGATTGTGA+GGG | - | chr1_3:27732799-27732818 | None:intergenic | 45.0% |
| ! | ATCTCAAACCTTTGGAGGGA+GGG | + | chr1_3:27733464-27733483 | Msa0112620:CDS | 45.0% |
| ! | GTCACTGCTTGTGGATTGTG+AGG | - | chr1_3:27732800-27732819 | None:intergenic | 50.0% |
| CAATCCACAAGCAGTGACCT+TGG | + | chr1_3:27732802-27732821 | Msa0112620:CDS | 50.0% | |
| CAAGCTTCTTGACCATGCCA+AGG | - | chr1_3:27732822-27732841 | None:intergenic | 50.0% | |
| CGAAAAACGGCATCCCTGTT+AGG | - | chr1_3:27733050-27733069 | None:intergenic | 50.0% | |
| ! | CATCTCAAACCTTTGGAGGG+AGG | + | chr1_3:27733463-27733482 | Msa0112620:CDS | 50.0% |
| !!! | GCTCCTTTTGGGTTTTCTGC+AGG | + | chr1_3:27733577-27733596 | Msa0112620:intron | 50.0% |
| CCACCTGCAGAAAACCCAAA+AGG | - | chr1_3:27733583-27733602 | None:intergenic | 50.0% | |
| !!! | CCTTTTGGGTTTTCTGCAGG+TGG | + | chr1_3:27733580-27733599 | Msa0112620:intron | 50.0% |
| ! | GTCACTGCTTGTGGATTGTG+AGG | - | chr1_3:27732800-27732819 | None:intergenic | 50.0% |
| CAATCCACAAGCAGTGACCT+TGG | + | chr1_3:27732802-27732821 | Msa0112620:CDS | 50.0% | |
| CAAGCTTCTTGACCATGCCA+AGG | - | chr1_3:27732822-27732841 | None:intergenic | 50.0% | |
| CGAAAAACGGCATCCCTGTT+AGG | - | chr1_3:27733050-27733069 | None:intergenic | 50.0% | |
| ! | CATCTCAAACCTTTGGAGGG+AGG | + | chr1_3:27733463-27733482 | Msa0112620:CDS | 50.0% |
| !!! | GCTCCTTTTGGGTTTTCTGC+AGG | + | chr1_3:27733577-27733596 | Msa0112620:intron | 50.0% |
| CCACCTGCAGAAAACCCAAA+AGG | - | chr1_3:27733583-27733602 | None:intergenic | 50.0% | |
| !!! | CCTTTTGGGTTTTCTGCAGG+TGG | + | chr1_3:27733580-27733599 | Msa0112620:intron | 50.0% |
| CATGCCAAGGTCACTGCTTG+TGG | - | chr1_3:27732809-27732828 | None:intergenic | 55.0% | |
| CACAAGCAGTGACCTTGGCA+TGG | + | chr1_3:27732807-27732826 | Msa0112620:CDS | 55.0% | |
| GTAGAAGACCCTCCCTCCAA+AGG | - | chr1_3:27733475-27733494 | None:intergenic | 55.0% | |
| CATGCCAAGGTCACTGCTTG+TGG | - | chr1_3:27732809-27732828 | None:intergenic | 55.0% | |
| CACAAGCAGTGACCTTGGCA+TGG | + | chr1_3:27732807-27732826 | Msa0112620:CDS | 55.0% | |
| GTAGAAGACCCTCCCTCCAA+AGG | - | chr1_3:27733475-27733494 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 27732640 | 27733688 | 27732640 | ID=Msa0112620;Name=Msa0112620 |
| chr1_3 | mRNA | 27732640 | 27733688 | 27732640 | ID=Msa0112620-mRNA-1;Parent=Msa0112620;Name=Msa0112620-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|247 |
| chr1_3 | exon | 27732640 | 27732930 | 27732640 | ID=Msa0112620-mRNA-1:exon:9200;Parent=Msa0112620-mRNA-1 |
| chr1_3 | exon | 27733147 | 27733509 | 27733147 | ID=Msa0112620-mRNA-1:exon:9201;Parent=Msa0112620-mRNA-1 |
| chr1_3 | exon | 27733599 | 27733688 | 27733599 | ID=Msa0112620-mRNA-1:exon:9202;Parent=Msa0112620-mRNA-1 |
| chr1_3 | CDS | 27732640 | 27732930 | 27732640 | ID=Msa0112620-mRNA-1:cds;Parent=Msa0112620-mRNA-1 |
| chr1_3 | CDS | 27733147 | 27733509 | 27733147 | ID=Msa0112620-mRNA-1:cds;Parent=Msa0112620-mRNA-1 |
| chr1_3 | CDS | 27733599 | 27733688 | 27733599 | ID=Msa0112620-mRNA-1:cds;Parent=Msa0112620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
