AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1411550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1411550 MtrunA17_Chr4g0070951 99.634 273 1 0 1 273 58 330 0.0 550
Msa1411550 MtrunA17_Chr2g0299691 73.723 274 71 1 1 273 86 359 9.97e-147 415
Msa1411550 MtrunA17_Chr1g0175561 58.182 275 110 2 1 272 54 326 1.57e-111 325
Msa1411550 MtrunA17_Chr7g0258811 58.608 273 108 2 3 272 101 371 5.34e-108 317
Msa1411550 MtrunA17_Chr2g0292091 54.182 275 122 2 1 273 54 326 3.44e-100 296
Msa1411550 MtrunA17_Chr2g0292101 55.474 274 118 2 1 272 55 326 7.96e-100 295
Msa1411550 MtrunA17_Chr2g0292181 54.545 275 121 2 1 273 68 340 2.37e-98 292
Msa1411550 MtrunA17_Chr2g0292211 54.909 275 120 2 1 273 70 342 2.85e-98 292
Msa1411550 MtrunA17_Chr2g0291751 55.109 274 119 2 1 272 59 330 9.20e-98 290
Msa1411550 MtrunA17_Chr2g0292251 54.545 275 121 2 1 273 58 330 1.16e-97 290
Msa1411550 MtrunA17_Chr5g0404721 53.285 274 123 2 1 272 60 330 1.53e-95 284
Msa1411550 MtrunA17_Chr5g0402581 53.091 275 121 4 1 272 57 326 8.60e-95 282
Msa1411550 MtrunA17_Chr2g0292261 54.779 272 119 2 3 272 61 330 1.53e-94 282
Msa1411550 MtrunA17_Chr3g0129051 54.710 276 110 5 1 272 58 322 1.62e-94 281
Msa1411550 MtrunA17_Chr5g0402571 53.091 275 121 4 1 272 57 326 2.01e-94 281
Msa1411550 MtrunA17_Chr2g0292111 52.920 274 125 2 1 272 59 330 2.74e-94 281
Msa1411550 MtrunA17_Chr8g0372601 52.364 275 126 2 1 273 60 331 1.13e-93 279
Msa1411550 MtrunA17_Chr2g0292241 52.727 275 126 2 1 273 59 331 1.46e-93 280
Msa1411550 MtrunA17_Chr4g0068621 52.190 274 124 3 1 272 68 336 5.76e-93 278
Msa1411550 MtrunA17_Chr2g0292151 52.190 274 127 2 1 272 59 330 1.91e-92 277
Msa1411550 MtrunA17_Chr2g0292271 53.650 274 123 2 1 272 59 330 5.19e-92 276
Msa1411550 MtrunA17_Chr5g0432441 51.799 278 117 5 1 272 60 326 9.95e-90 269
Msa1411550 MtrunA17_Chr5g0438021 52.174 276 117 5 1 272 61 325 1.47e-89 268
Msa1411550 MtrunA17_Chr2g0320101 50.730 274 122 3 1 272 55 317 1.60e-89 268
Msa1411550 MtrunA17_Chr3g0106921 51.986 277 117 6 1 272 55 320 1.62e-89 268
Msa1411550 MtrunA17_Chr4g0038171 51.625 277 120 4 1 272 54 321 3.38e-89 267
Msa1411550 MtrunA17_Chr2g0292291 51.825 274 127 3 3 273 62 333 3.57e-89 268
Msa1411550 MtrunA17_Chr5g0400331 50.542 277 131 3 1 272 56 331 4.29e-89 268
Msa1411550 MtrunA17_Chr2g0320071 50.000 274 124 3 1 272 55 317 7.04e-89 266
Msa1411550 MtrunA17_Chr4g0013171 52.899 276 115 5 1 272 57 321 8.17e-89 266
Msa1411550 MtrunA17_Chr7g0244461 49.635 274 125 3 1 272 50 312 1.56e-87 263
Msa1411550 MtrunA17_Chr4g0043391 50.181 277 124 4 1 272 57 324 1.62e-87 263
Msa1411550 MtrunA17_Chr2g0320051 50.725 276 120 4 1 272 55 318 2.36e-87 263
Msa1411550 MtrunA17_Chr3g0114451 51.460 274 120 3 1 272 56 318 3.61e-87 262
Msa1411550 MtrunA17_Chr5g0432351 52.518 278 117 6 1 273 55 322 7.86e-87 261
Msa1411550 MtrunA17_Chr4g0038151 49.819 277 124 4 1 272 55 321 1.10e-86 261
Msa1411550 MtrunA17_Chr4g0013201 49.458 277 121 4 1 272 76 338 1.25e-86 261
Msa1411550 MtrunA17_Chr3g0129061 53.986 276 112 5 1 272 58 322 4.43e-86 259
Msa1411550 MtrunA17_Chr4g0013181 52.174 276 117 5 1 272 89 353 4.69e-86 261
Msa1411550 MtrunA17_Chr7g0244451 50.000 274 124 4 1 272 54 316 1.76e-85 258
Msa1411550 MtrunA17_Chr2g0320061 49.635 274 126 3 1 272 55 318 3.16e-85 257
Msa1411550 MtrunA17_Chr4g0013191 48.387 279 123 5 1 272 76 340 6.10e-85 257
Msa1411550 MtrunA17_Chr2g0279041 49.638 276 128 5 1 272 57 325 7.14e-85 256
Msa1411550 MtrunA17_Chr4g0038161 49.458 277 125 4 1 272 54 320 7.51e-85 256
Msa1411550 MtrunA17_Chr5g0432341 51.799 278 119 6 1 273 55 322 7.64e-85 256
Msa1411550 MtrunA17_Chr2g0320091 49.091 275 126 4 1 272 55 318 2.81e-84 255
Msa1411550 MtrunA17_Chr5g0432331 51.439 278 120 6 1 273 86 353 4.57e-84 255
Msa1411550 MtrunA17_Chr2g0320031 47.445 274 132 3 1 272 56 319 2.63e-83 252
Msa1411550 MtrunA17_Chr3g0129041 53.261 276 114 5 1 272 58 322 3.22e-83 252
Msa1411550 MtrunA17_Chr4g0063671 48.736 277 130 5 1 272 51 320 5.32e-83 251
Msa1411550 MtrunA17_Chr1g0155611 48.905 274 136 2 1 272 76 347 8.70e-83 252
Msa1411550 MtrunA17_Chr5g0421411 47.101 276 141 4 2 273 12 286 5.57e-82 248
Msa1411550 MtrunA17_Chr4g0013721 46.324 272 137 4 3 272 132 396 1.30e-80 249
Msa1411550 MtrunA17_Chr3g0106901 50.000 274 124 3 1 272 61 323 2.22e-80 245
Msa1411550 MtrunA17_Chr2g0322861 46.545 275 139 5 1 272 117 386 2.42e-79 244
Msa1411550 MtrunA17_Chr7g0268501 47.080 274 135 5 1 272 55 320 5.62e-79 241
Msa1411550 MtrunA17_Chr7g0268521 47.080 274 135 5 1 272 55 320 5.62e-79 241
Msa1411550 MtrunA17_Chr4g0013821 43.956 273 144 4 3 273 60 325 2.65e-78 240
Msa1411550 MtrunA17_Chr3g0107881 49.819 277 125 5 1 272 57 324 8.14e-78 238
Msa1411550 MtrunA17_Chr2g0279061 48.855 262 123 5 15 272 12 266 8.83e-77 234
Msa1411550 MtrunA17_Chr1g0213061 44.404 277 139 5 1 273 57 322 1.35e-76 236
Msa1411550 MtrunA17_Chr4g0024121 44.364 275 145 4 1 272 57 326 1.69e-76 235
Msa1411550 MtrunA17_Chr8g0371381 47.273 275 127 8 3 272 58 319 5.66e-76 234
Msa1411550 MtrunA17_Chr7g0224371 45.455 275 136 5 1 273 61 323 1.40e-74 230
Msa1411550 MtrunA17_Chr1g0204011 45.255 274 136 7 3 272 59 322 8.89e-74 228
Msa1411550 MtrunA17_Chr5g0405991 45.421 273 135 7 3 272 55 316 1.29e-72 225
Msa1411550 MtrunA17_Chr1g0157051 46.154 273 134 7 3 272 56 318 3.56e-71 221
Msa1411550 MtrunA17_Chr7g0225221 45.421 273 139 4 2 272 56 320 1.56e-70 220
Msa1411550 MtrunA17_Chr7g0254201 43.223 273 142 7 3 273 52 313 6.22e-69 216
Msa1411550 MtrunA17_Chr3g0128061 42.391 276 152 3 1 273 56 327 6.38e-69 216
Msa1411550 MtrunA17_Chr2g0278671 43.478 276 144 5 2 272 55 323 1.55e-68 215
Msa1411550 MtrunA17_Chr6g0477071 43.636 275 136 9 1 272 84 342 1.56e-68 215
Msa1411550 MtrunA17_Chr1g0197411 43.796 274 145 4 5 273 62 331 1.12e-67 213
Msa1411550 MtrunA17_Chr7g0254231 41.818 275 144 6 1 273 52 312 2.63e-67 211
Msa1411550 MtrunA17_Chr2g0329641 41.304 276 150 5 3 273 68 336 3.79e-66 209
Msa1411550 MtrunA17_Chr4g0076211 42.125 273 147 6 1 272 71 333 1.39e-65 207
Msa1411550 MtrunA17_Chr2g0296621 43.066 274 144 5 1 273 80 342 1.87e-65 207
Msa1411550 MtrunA17_Chr6g0467161 43.015 272 139 7 5 273 79 337 1.09e-64 205
Msa1411550 MtrunA17_Chr1g0164891 41.727 278 152 6 1 272 119 392 2.50e-64 206
Msa1411550 MtrunA17_Chr1g0148021 43.542 271 145 3 6 272 62 328 2.97e-64 204
Msa1411550 MtrunA17_Chr1g0194151 41.367 278 153 5 1 272 60 333 3.61e-64 204
Msa1411550 MtrunA17_Chr1g0188431 42.701 274 140 7 1 272 69 327 3.99e-64 204
Msa1411550 MtrunA17_Chr2g0316481 39.610 308 146 8 1 273 106 408 9.82e-64 205
Msa1411550 MtrunA17_Chr6g0460711 41.241 274 149 6 1 272 51 314 1.70e-63 202
Msa1411550 MtrunA17_Chr2g0316791 38.636 308 149 7 1 273 106 408 4.13e-63 203
Msa1411550 MtrunA17_Chr5g0432401 44.565 276 99 8 1 271 59 285 4.72e-63 199
Msa1411550 MtrunA17_Chr6g0467121 44.074 270 135 6 5 272 108 363 5.39e-63 202
Msa1411550 MtrunA17_Chr2g0316831 39.088 307 149 7 1 273 142 444 1.13e-62 203
Msa1411550 MtrunA17_Chr2g0316191 38.835 309 148 8 1 273 106 409 3.53e-62 201
Msa1411550 MtrunA17_Chr5g0401431 41.328 271 150 4 6 271 62 328 1.06e-61 197
Msa1411550 MtrunA17_Chr2g0311251 39.145 304 145 9 5 273 44 342 1.74e-61 197
Msa1411550 MtrunA17_Chr4g0046131 42.545 275 145 7 2 268 73 342 1.69e-60 195
Msa1411550 MtrunA17_Chr1g0194271 40.283 283 152 5 3 272 62 340 2.16e-60 194
Msa1411550 MtrunA17_Chr4g0053871 41.912 272 142 6 6 271 62 323 2.22e-60 194
Msa1411550 MtrunA17_Chr4g0072091 42.222 270 148 4 2 268 55 319 1.34e-59 192
Msa1411550 MtrunA17_Chr2g0311241 35.057 348 146 9 1 273 90 432 3.52e-57 189
Msa1411550 MtrunA17_Chr5g0413051 37.770 278 160 6 3 272 105 377 1.69e-56 185
Msa1411550 MtrunA17_Chr8g0364291 40.590 271 153 4 6 272 58 324 2.80e-56 183
Msa1411550 MtrunA17_Chr3g0136751 40.511 274 147 6 5 272 59 322 2.66e-55 181
Msa1411550 MtrunA17_Chr2g0292281 45.540 213 104 3 61 273 17 217 8.55e-54 174
Msa1411550 MtrunA17_Chr6g0467251 40.672 268 142 7 5 268 70 324 4.77e-53 176
Msa1411550 MtrunA17_Chr6g0451571 39.928 278 152 9 2 272 65 334 3.10e-51 171
Msa1411550 MtrunA17_Chr1g0181511 35.740 277 163 6 2 273 58 324 6.96e-51 169
Msa1411550 MtrunA17_Chr4g0075241 35.531 273 167 4 3 272 61 327 3.67e-49 165
Msa1411550 MtrunA17_Chr4g0074851 34.672 274 166 5 4 273 65 329 3.44e-48 162
Msa1411550 MtrunA17_Chr1g0181481 35.870 276 160 7 4 273 60 324 9.51e-47 159
Msa1411550 MtrunA17_Chr1g0181431 35.507 276 161 7 4 273 60 324 1.30e-45 155
Msa1411550 MtrunA17_Chr3g0114461 42.424 198 104 2 75 272 5 192 4.75e-45 150
Msa1411550 MtrunA17_Chr2g0316811 38.039 255 108 7 1 206 80 333 1.09e-44 154
Msa1411550 MtrunA17_Chr2g0316141 35.495 293 130 11 17 273 11 280 3.26e-43 148
Msa1411550 MtrunA17_Chr2g0316181 35.495 293 130 11 17 273 11 280 3.26e-43 148
Msa1411550 MtrunA17_Chr4g0004591 34.035 285 126 4 4 268 110 352 3.77e-43 150
Msa1411550 MtrunA17_Chr3g0114491 70.886 79 21 1 1 77 48 126 8.87e-31 112
Msa1411550 MtrunA17_Chr3g0104101 37.415 147 89 3 129 273 5 150 4.36e-24 94.7
Msa1411550 MtrunA17_Chr1g0181501 30.457 197 124 5 80 273 4 190 4.73e-23 93.2
Msa1411550 MtrunA17_Chr6g0468731 60.870 69 25 2 10 78 22 88 6.38e-22 87.4
Msa1411550 MtrunA17_Chr5g0432321 37.903 124 69 2 90 213 17 132 1.28e-20 85.1
Msa1411550 MtrunA17_Chr2g0316771 28.889 180 94 3 119 268 7 182 2.90e-20 85.9
Msa1411550 MtrunA17_Chr7g0254181 43.158 95 51 1 41 135 31 122 3.81e-18 79.3
Msa1411550 MtrunA17_Chr7g0268491 44.444 90 45 2 183 272 13 97 9.17e-15 68.6
Msa1411550 MtrunA17_Chr1g0196191 38.889 108 55 4 9 110 23 125 1.72e-14 69.3
Msa1411550 MtrunA17_Chr5g0432361 45.161 93 47 3 179 271 20 108 3.99e-14 67.0
Msa1411550 MtrunA17_Chr4g0013811 37.662 77 48 0 76 152 2 78 2.35e-13 64.3
Msa1411550 MtrunA17_Chr3g0137751 27.473 273 112 10 2 253 105 312 6.13e-13 67.8
Msa1411550 MtrunA17_Chr1g0181491 46.753 77 38 2 4 78 44 119 1.04e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1411550 AT5G19890.1 66.176 272 88 3 1 272 60 327 8.42e-130 371
Msa1411550 AT5G06730.1 59.489 274 107 2 1 272 63 334 4.05e-111 325
Msa1411550 AT5G06720.1 58.394 274 110 2 1 272 62 333 1.09e-109 320
Msa1411550 AT2G38390.1 54.545 275 120 3 1 272 61 333 1.62e-102 303
Msa1411550 AT4G36430.1 55.273 275 118 2 1 273 60 331 7.20e-102 300
Msa1411550 AT2G18150.1 54.745 274 119 2 1 272 66 336 7.98e-101 298
Msa1411550 AT2G18140.1 54.380 274 120 2 1 272 65 335 1.42e-100 297
Msa1411550 AT2G38380.1 54.545 275 120 3 1 272 61 333 2.41e-100 297
Msa1411550 AT5G66390.1 53.285 274 123 2 1 272 63 333 2.06e-97 289
Msa1411550 AT1G49570.1 53.846 273 117 4 1 268 78 346 2.11e-94 282
Msa1411550 AT4G08770.1 52.174 276 128 3 1 273 54 328 7.75e-94 280
Msa1411550 AT3G32980.1 51.812 276 129 3 1 273 61 335 3.89e-93 279
Msa1411550 AT3G49120.1 52.536 276 127 3 1 273 62 336 6.48e-93 278
Msa1411550 AT3G50990.1 50.362 276 128 4 1 272 71 341 2.40e-91 274
Msa1411550 AT3G49110.1 51.812 276 129 3 1 273 63 337 2.61e-91 274
Msa1411550 AT4G08780.1 50.725 276 132 3 1 273 54 328 5.84e-91 273
Msa1411550 AT5G19880.1 51.986 277 126 3 1 272 55 329 1.68e-90 271
Msa1411550 AT5G05340.1 51.282 273 116 5 1 268 60 320 7.65e-90 270
Msa1411550 AT5G58390.1 52.708 277 115 6 1 272 51 316 1.67e-89 268
Msa1411550 AT1G44970.1 52.920 274 125 2 1 272 75 346 2.31e-88 266
Msa1411550 AT2G35380.1 49.097 277 135 4 1 272 60 335 4.57e-86 260
Msa1411550 AT4G16270.1 50.542 277 124 6 1 272 80 348 4.72e-86 261
Msa1411550 AT1G14550.1 47.636 275 132 4 1 272 56 321 8.89e-85 256
Msa1411550 AT5G58400.1 50.542 277 121 6 1 272 60 325 4.71e-84 255
Msa1411550 AT5G64120.1 48.162 272 133 6 1 272 65 328 1.25e-81 249
Msa1411550 AT1G68850.1 46.595 279 139 7 2 273 61 336 1.84e-81 249
Msa1411550 AT2G41480.1 48.718 273 128 5 5 272 63 328 1.60e-79 243
Msa1411550 AT5G17820.1 45.926 270 134 5 3 272 56 313 4.93e-79 241
Msa1411550 AT5G64110.1 48.708 271 128 6 5 272 68 330 6.25e-79 242
Msa1411550 AT5G17820.2 45.926 270 134 5 3 272 109 366 4.29e-78 241
Msa1411550 AT4G11290.1 45.652 276 142 4 1 272 55 326 6.94e-78 239
Msa1411550 AT1G05260.1 45.196 281 136 6 1 273 56 326 7.15e-77 236
Msa1411550 AT1G14540.1 44.891 274 140 3 1 272 51 315 7.33e-77 236
Msa1411550 AT2G22420.1 44.118 272 143 4 3 272 55 319 7.41e-77 236
Msa1411550 AT4G25980.1 45.487 277 140 4 1 272 56 326 2.12e-76 235
Msa1411550 AT5G15180.1 42.491 273 151 4 1 272 62 329 4.14e-75 232
Msa1411550 AT1G05240.1 44.086 279 140 5 1 272 56 325 8.46e-75 231
Msa1411550 AT1G05250.1 44.086 279 140 5 1 272 56 325 8.46e-75 231
Msa1411550 AT3G01190.1 45.421 273 141 5 1 272 56 321 9.03e-75 231
Msa1411550 AT5G39580.1 46.840 269 134 6 5 272 59 319 3.58e-73 227
Msa1411550 AT2G35380.2 46.939 245 126 3 31 272 4 247 5.62e-72 221
Msa1411550 AT3G03670.1 45.091 275 138 6 3 272 55 321 3.42e-70 219
Msa1411550 AT3G21770.1 44.000 275 148 4 1 273 59 329 1.64e-69 218
Msa1411550 AT5G51890.1 43.796 274 141 7 3 272 58 322 2.61e-69 217
Msa1411550 AT5G42180.1 45.221 272 136 7 3 271 55 316 2.80e-69 217
Msa1411550 AT5G64100.1 44.981 269 139 6 5 272 71 331 5.28e-69 216
Msa1411550 AT4G37530.1 44.118 272 143 4 6 272 62 329 1.25e-67 213
Msa1411550 AT5G14130.1 45.018 271 138 5 6 272 67 330 5.41e-66 209
Msa1411550 AT1G71695.1 41.367 278 147 7 1 273 74 340 1.25e-65 209
Msa1411550 AT5G14130.2 45.018 271 138 5 6 272 108 371 1.53e-65 209
Msa1411550 AT4G37520.1 42.279 272 148 4 6 272 62 329 1.23e-64 205
Msa1411550 AT2G18980.1 42.435 271 145 4 6 272 60 323 1.57e-64 205
Msa1411550 AT5G24070.1 39.928 278 154 6 1 273 67 336 2.85e-64 205
Msa1411550 AT4G33870.1 37.049 305 150 6 1 268 98 397 6.57e-64 206
Msa1411550 AT4G30170.1 42.066 271 146 4 6 272 62 325 2.83e-63 202
Msa1411550 AT1G77100.1 43.223 273 145 5 2 272 55 319 3.38e-63 201
Msa1411550 AT2G43480.1 40.794 277 151 6 1 272 67 335 1.40e-62 200
Msa1411550 AT4G37520.2 41.544 272 147 5 6 272 62 326 2.31e-62 199
Msa1411550 AT3G49960.1 41.544 272 150 4 6 272 62 329 2.02e-61 197
Msa1411550 AT4G33420.1 42.701 274 140 8 1 272 67 325 7.90e-61 195
Msa1411550 AT5G67400.1 40.809 272 152 4 6 272 62 329 2.54e-60 194
Msa1411550 AT4G33420.2 42.701 274 140 8 1 272 114 372 3.01e-60 195
Msa1411550 AT4G17690.1 40.925 281 143 6 2 273 57 323 2.08e-58 189
Msa1411550 AT4G26010.1 40.659 273 142 8 3 272 54 309 2.35e-58 189
Msa1411550 AT4G26010.2 40.659 273 142 8 3 272 82 337 4.02e-58 189
Msa1411550 AT5G22410.1 40.794 277 144 9 1 269 58 322 4.27e-58 189
Msa1411550 AT5G47000.1 41.516 277 148 6 2 273 64 331 2.02e-57 187
Msa1411550 AT2G39040.1 41.281 281 150 7 1 272 76 350 4.29e-57 186
Msa1411550 AT1G30870.1 39.130 276 155 6 1 273 81 346 3.54e-56 184
Msa1411550 AT4G31760.1 40.146 274 148 8 5 272 63 326 1.50e-55 182
Msa1411550 AT2G34060.1 40.511 274 150 7 6 271 77 345 1.59e-55 182
Msa1411550 AT2G24800.1 40.364 275 147 8 5 272 65 329 9.58e-55 180
Msa1411550 AT3G28200.1 37.818 275 157 5 2 272 52 316 5.39e-54 177
Msa1411550 AT4G37530.2 44.495 218 116 3 6 218 62 279 7.33e-54 176
Msa1411550 AT1G24110.1 39.852 271 154 5 6 272 57 322 5.88e-53 175
Msa1411550 AT5G40150.1 37.455 275 159 5 2 272 63 328 2.01e-52 174
Msa1411550 AT1G34510.1 36.630 273 153 7 3 272 54 309 2.51e-51 171
Msa1411550 AT4G21960.1 32.734 278 166 6 4 273 64 328 8.33e-48 162
Msa1411550 AT2G37130.2 34.752 282 158 8 2 272 30 296 1.57e-44 152
Msa1411550 AT2G37130.1 34.752 282 158 8 2 272 61 327 3.58e-44 152
Msa1411550 AT3G17070.1 34.783 276 160 6 3 268 70 335 5.74e-44 152
Msa1411550 AT4G25980.2 51.471 136 64 2 1 136 101 234 7.99e-40 140
Msa1411550 AT5G39580.2 53.237 139 62 3 5 143 59 194 5.87e-38 134
Msa1411550 AT3G17070.2 33.083 266 157 7 13 268 18 272 4.55e-37 132
Msa1411550 AT2G24800.2 45.865 133 64 4 5 134 65 192 2.85e-26 103
Msa1411550 AT1G77490.2 24.632 272 151 11 5 257 106 342 2.12e-13 70.1
Msa1411550 AT3G42570.1 35.052 97 62 1 41 136 53 149 2.12e-13 66.6
Msa1411550 AT1G77490.1 24.632 272 151 11 5 257 106 342 2.31e-13 70.1

Find 49 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTATAAGAACTTGCTTAA+TGG 0.138200 tig0023820:-54120 Msa1411550:CDS
ACAGATGTTGTTTCTTTATC+AGG 0.202122 tig0023820:-54862 Msa1411550:intron
CCTAATATCAACTCTGTTAG+AGG 0.217344 tig0023820:-55365 Msa1411550:CDS
CAAAATTTGTGTCCTCAAAC+TGG 0.256498 tig0023820:-54201 Msa1411550:CDS
TCTCCATCAGACCCAGTCTT+TGG 0.280146 tig0023820:+53949 None:intergenic
CCTCTAACAGAGTTGATATT+AGG 0.295967 tig0023820:+55365 None:intergenic
GGCAGAGTGGTGGTCCTTCA+TGG 0.301720 tig0023820:-55011 Msa1411550:intron
TTGTGATGGATCGATATTAT+TGG 0.350338 tig0023820:-55420 Msa1411550:CDS
ACACAACTGCAGTTCTTGAT+AGG 0.384456 tig0023820:-54170 Msa1411550:CDS
TCGTTGTAGCTTTGTACTAA+AGG 0.421872 tig0023820:+54033 None:intergenic
GGGAATATAAATCCAAAGAC+TGG 0.423576 tig0023820:-53961 Msa1411550:CDS
CCTTCATGGAGTGTTATGTT+AGG 0.435068 tig0023820:-54997 Msa1411550:CDS
CCAGACAGTACACTGGAAAC+TGG 0.438929 tig0023820:-54240 Msa1411550:CDS
GTTTCAAAGTTTACCAATGT+AGG 0.441204 tig0023820:-54895 Msa1411550:CDS
TACAAGAAGAACAGAATCTC+TGG 0.463222 tig0023820:+55256 None:intergenic
TGTCAAATCTATGATCAAGA+TGG 0.466633 tig0023820:-53983 Msa1411550:CDS
ATAGTATCTAGTGGGTCAAA+TGG 0.469011 tig0023820:+54919 None:intergenic
CTGGGTCTGATGGAGAGATT+AGG 0.471470 tig0023820:-53942 Msa1411550:CDS
TTTCAAAGTTTACCAATGTA+GGG 0.472928 tig0023820:-54894 Msa1411550:CDS
AAAGACGGAACAATCTCAAA+TGG 0.474209 tig0023820:-54970 Msa1411550:CDS
GTCAAATCTATGATCAAGAT+GGG 0.474767 tig0023820:-53982 Msa1411550:CDS
AACAGAATCTCTGGCAGCTA+TGG 0.475788 tig0023820:+55265 None:intergenic
TTTGATTATCAGGGTTGTGA+TGG 0.484674 tig0023820:-55434 Msa1411550:intron
GTGTTTCCATCCCCAGTTTG+AGG 0.487886 tig0023820:+54189 None:intergenic
AAAATTTGTGTCCTCAAACT+GGG 0.489367 tig0023820:-54200 Msa1411550:CDS
TGTGAAGGTGCTCATACGAT+TGG 0.493811 tig0023820:-54321 Msa1411550:intron
AAGAACTTGCTTAATGGAAA+GGG 0.497363 tig0023820:-54114 Msa1411550:CDS
TAAGAACTTGCTTAATGGAA+AGG 0.498719 tig0023820:-54115 Msa1411550:CDS
GTGAAGGTGCTCATACGATT+GGG 0.512271 tig0023820:-54320 Msa1411550:intron
AATCCAAAGACTGGGTCTGA+TGG 0.518229 tig0023820:-53952 Msa1411550:CDS
TGTTGTTGATACAATCAAAA+CGG 0.525649 tig0023820:-55336 Msa1411550:CDS
TTGTGTCCTCAAACTGGGGA+TGG 0.532776 tig0023820:-54195 Msa1411550:CDS
CCAGTTTCCAGTGTACTGTC+TGG 0.541281 tig0023820:+54240 None:intergenic
AAATTTGTGTCCTCAAACTG+GGG 0.569738 tig0023820:-54199 Msa1411550:CDS
TGTGAGATTGAGCCCTACAT+TGG 0.575552 tig0023820:+54882 None:intergenic
AAATGGATCTCTAGCAAATG+TGG 0.576250 tig0023820:-54953 Msa1411550:CDS
TTTGAAACAATAGTATCTAG+TGG 0.578610 tig0023820:+54910 None:intergenic
TGATACAATCAAAACGGCAG+TGG 0.588096 tig0023820:-55330 Msa1411550:CDS
TCTAGTGGGTCAAATGGAGA+AGG 0.593026 tig0023820:+54925 None:intergenic
TTGAAACAATAGTATCTAGT+GGG 0.599339 tig0023820:+54911 None:intergenic
TATAATGTTTGGCAGAGTGG+TGG 0.612855 tig0023820:-55021 Msa1411550:intron
GATGGATCGATATTATTGGA+TGG 0.618908 tig0023820:-55416 Msa1411550:CDS
AGGTTCACCAGACAGTACAC+TGG 0.630979 tig0023820:-54247 Msa1411550:CDS
GGAATATAAATCCAAAGACT+GGG 0.637695 tig0023820:-53960 Msa1411550:CDS
CCTAACATAACACTCCATGA+AGG 0.648975 tig0023820:+54997 None:intergenic
GCAGTGGAGAGTGCGTGTAG+CGG 0.660124 tig0023820:-55314 Msa1411550:CDS
GTTATGTTAGGACGAAAAGA+CGG 0.670152 tig0023820:-54985 Msa1411550:CDS
GGATCGATATTATTGGATGG+TGG 0.673277 tig0023820:-55413 Msa1411550:CDS
TCAAATCTATGATCAAGATG+GGG 0.691790 tig0023820:-53981 Msa1411550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTATTATTTTGATTATC+AGG - tig0023820:54168-54187 Msa1411550:CDS 10.0%
!!! AATTATTATTTTGATTATCA+GGG - tig0023820:54169-54188 Msa1411550:CDS 10.0%
!!! AAATTATTATTTTGATTATC+AGG - tig0023820:54168-54187 Msa1411550:CDS 10.0%
!!! AATTATTATTTTGATTATCA+GGG - tig0023820:54169-54188 Msa1411550:CDS 10.0%
!! GAATAAATTAAGAAAGTTAT+GGG + tig0023820:54397-54416 None:intergenic 15.0%
!! AGAATAAATTAAGAAAGTTA+TGG + tig0023820:54398-54417 None:intergenic 15.0%
!! AGTAATTAATTGAAAGTTAT+GGG + tig0023820:54502-54521 None:intergenic 15.0%
!! AAGTAATTAATTGAAAGTTA+TGG + tig0023820:54503-54522 None:intergenic 15.0%
!!! TTTATAGTCATACTTATTTT+AGG + tig0023820:54820-54839 None:intergenic 15.0%
!! AAGTATGACTATAAATAAAT+AGG - tig0023820:54825-54844 Msa1411550:intron 15.0%
!! AGTATGACTATAAATAAATA+GGG - tig0023820:54826-54845 Msa1411550:intron 15.0%
!! GAATAAATTAAGAAAGTTAT+GGG + tig0023820:54397-54416 None:intergenic 15.0%
!! AGAATAAATTAAGAAAGTTA+TGG + tig0023820:54398-54417 None:intergenic 15.0%
!! AGTAATTAATTGAAAGTTAT+GGG + tig0023820:54502-54521 None:intergenic 15.0%
!! AAGTAATTAATTGAAAGTTA+TGG + tig0023820:54503-54522 None:intergenic 15.0%
!!! TTTATAGTCATACTTATTTT+AGG + tig0023820:54820-54839 None:intergenic 15.0%
!! AAGTATGACTATAAATAAAT+AGG - tig0023820:54825-54844 Msa1411550:intron 15.0%
!! AGTATGACTATAAATAAATA+GGG - tig0023820:54826-54845 Msa1411550:intron 15.0%
!! TATGACCATTATATAATGTT+TGG - tig0023820:54580-54599 Msa1411550:intron 20.0%
!!! ACTTTTTTACTAAAATCAGA+AGG + tig0023820:55075-55094 None:intergenic 20.0%
!!! TATTTAAGGTCAAATTGTTT+AGG + tig0023820:55181-55200 None:intergenic 20.0%
!! TATGACCATTATATAATGTT+TGG - tig0023820:54580-54599 Msa1411550:intron 20.0%
!!! ACTTTTTTACTAAAATCAGA+AGG + tig0023820:55075-55094 None:intergenic 20.0%
!!! TATTTAAGGTCAAATTGTTT+AGG + tig0023820:55181-55200 None:intergenic 20.0%
! TGTTGTTGATACAATCAAAA+CGG - tig0023820:54276-54295 Msa1411550:CDS 25.0%
! AATTAAGAAAGTTATGGGAT+TGG + tig0023820:54392-54411 None:intergenic 25.0%
!!! CAGTATTTTGTTTATAGTCA+AGG - tig0023820:54427-54446 Msa1411550:intron 25.0%
! TTGAAACAATAGTATCTAGT+GGG + tig0023820:54704-54723 None:intergenic 25.0%
!! TTTGAAACAATAGTATCTAG+TGG + tig0023820:54705-54724 None:intergenic 25.0%
! TTTCAAAGTTTACCAATGTA+GGG - tig0023820:54718-54737 Msa1411550:intron 25.0%
! GTAAATACTGAATTTCATTG+TGG - tig0023820:54772-54791 Msa1411550:intron 25.0%
! GAGATCCATAGAAATTATAT+AGG - tig0023820:54794-54813 Msa1411550:intron 25.0%
! TTAGGCCTATATAATTTCTA+TGG + tig0023820:54802-54821 None:intergenic 25.0%
! TCTAACTCAATTCCAAAAAT+AGG + tig0023820:54858-54877 None:intergenic 25.0%
! AAAAGTGAACCATAGTAATT+AGG - tig0023820:55089-55108 Msa1411550:intron 25.0%
!!! ATGGATTCAAGTGTTATTTA+AGG + tig0023820:55195-55214 None:intergenic 25.0%
! GATAAAATTAAGCAAGTAGA+TGG + tig0023820:55214-55233 None:intergenic 25.0%
! TTTGAATTATACATCTGTGA+AGG - tig0023820:55276-55295 Msa1411550:CDS 25.0%
!! AATAGATTGTTCAACTTTTC+TGG - tig0023820:55339-55358 Msa1411550:CDS 25.0%
!! TACTATAAGAACTTGCTTAA+TGG - tig0023820:55492-55511 Msa1411550:intron 25.0%
! TGTTGTTGATACAATCAAAA+CGG - tig0023820:54276-54295 Msa1411550:CDS 25.0%
! AATTAAGAAAGTTATGGGAT+TGG + tig0023820:54392-54411 None:intergenic 25.0%
!!! CAGTATTTTGTTTATAGTCA+AGG - tig0023820:54427-54446 Msa1411550:intron 25.0%
! TTGAAACAATAGTATCTAGT+GGG + tig0023820:54704-54723 None:intergenic 25.0%
!! TTTGAAACAATAGTATCTAG+TGG + tig0023820:54705-54724 None:intergenic 25.0%
! TTTCAAAGTTTACCAATGTA+GGG - tig0023820:54718-54737 Msa1411550:intron 25.0%
! GTAAATACTGAATTTCATTG+TGG - tig0023820:54772-54791 Msa1411550:intron 25.0%
! GAGATCCATAGAAATTATAT+AGG - tig0023820:54794-54813 Msa1411550:intron 25.0%
! TTAGGCCTATATAATTTCTA+TGG + tig0023820:54802-54821 None:intergenic 25.0%
! TCTAACTCAATTCCAAAAAT+AGG + tig0023820:54858-54877 None:intergenic 25.0%
! AAAAGTGAACCATAGTAATT+AGG - tig0023820:55089-55108 Msa1411550:intron 25.0%
!!! ATGGATTCAAGTGTTATTTA+AGG + tig0023820:55195-55214 None:intergenic 25.0%
! GATAAAATTAAGCAAGTAGA+TGG + tig0023820:55214-55233 None:intergenic 25.0%
! TTTGAATTATACATCTGTGA+AGG - tig0023820:55276-55295 Msa1411550:CDS 25.0%
!! AATAGATTGTTCAACTTTTC+TGG - tig0023820:55339-55358 Msa1411550:CDS 25.0%
!! TACTATAAGAACTTGCTTAA+TGG - tig0023820:55492-55511 Msa1411550:intron 25.0%
!! TTGTGATGGATCGATATTAT+TGG - tig0023820:54192-54211 Msa1411550:CDS 30.0%
CTCTGCCAAACATTATATAA+TGG + tig0023820:54588-54607 None:intergenic 30.0%
TTATATAATGTTTGGCAGAG+TGG - tig0023820:54588-54607 Msa1411550:intron 30.0%
GTTTCAAAGTTTACCAATGT+AGG - tig0023820:54717-54736 Msa1411550:intron 30.0%
!! ACAGATGTTGTTTCTTTATC+AGG - tig0023820:54750-54769 Msa1411550:intron 30.0%
AAACTAGCGAACAATCTTTA+AGG - tig0023820:55005-55024 Msa1411550:CDS 30.0%
AACTAGCGAACAATCTTTAA+GGG - tig0023820:55006-55025 Msa1411550:CDS 30.0%
CGTTAAATGCCTAATTACTA+TGG + tig0023820:55101-55120 None:intergenic 30.0%
TAATTAGGCATTTAACGATG+AGG - tig0023820:55104-55123 Msa1411550:intron 30.0%
! TTTGAGGACACAAATTTTGT+AGG + tig0023820:55410-55429 None:intergenic 30.0%
AAAATTTGTGTCCTCAAACT+GGG - tig0023820:55412-55431 Msa1411550:CDS 30.0%
! TAAGAACTTGCTTAATGGAA+AGG - tig0023820:55497-55516 Msa1411550:intron 30.0%
! AAGAACTTGCTTAATGGAAA+GGG - tig0023820:55498-55517 Msa1411550:intron 30.0%
!!! GATTTTGATTTCTACTGATG+AGG - tig0023820:55539-55558 Msa1411550:intron 30.0%
TGTCAAATCTATGATCAAGA+TGG - tig0023820:55629-55648 Msa1411550:intron 30.0%
GTCAAATCTATGATCAAGAT+GGG - tig0023820:55630-55649 Msa1411550:intron 30.0%
TCAAATCTATGATCAAGATG+GGG - tig0023820:55631-55650 Msa1411550:intron 30.0%
GGAATATAAATCCAAAGACT+GGG - tig0023820:55652-55671 Msa1411550:intron 30.0%
!! TTGTGATGGATCGATATTAT+TGG - tig0023820:54192-54211 Msa1411550:CDS 30.0%
CTCTGCCAAACATTATATAA+TGG + tig0023820:54588-54607 None:intergenic 30.0%
TTATATAATGTTTGGCAGAG+TGG - tig0023820:54588-54607 Msa1411550:intron 30.0%
GTTTCAAAGTTTACCAATGT+AGG - tig0023820:54717-54736 Msa1411550:intron 30.0%
!! ACAGATGTTGTTTCTTTATC+AGG - tig0023820:54750-54769 Msa1411550:intron 30.0%
AAACTAGCGAACAATCTTTA+AGG - tig0023820:55005-55024 Msa1411550:CDS 30.0%
AACTAGCGAACAATCTTTAA+GGG - tig0023820:55006-55025 Msa1411550:CDS 30.0%
CGTTAAATGCCTAATTACTA+TGG + tig0023820:55101-55120 None:intergenic 30.0%
TAATTAGGCATTTAACGATG+AGG - tig0023820:55104-55123 Msa1411550:intron 30.0%
! TTTGAGGACACAAATTTTGT+AGG + tig0023820:55410-55429 None:intergenic 30.0%
AAAATTTGTGTCCTCAAACT+GGG - tig0023820:55412-55431 Msa1411550:CDS 30.0%
! TAAGAACTTGCTTAATGGAA+AGG - tig0023820:55497-55516 Msa1411550:intron 30.0%
! AAGAACTTGCTTAATGGAAA+GGG - tig0023820:55498-55517 Msa1411550:intron 30.0%
!!! GATTTTGATTTCTACTGATG+AGG - tig0023820:55539-55558 Msa1411550:intron 30.0%
TGTCAAATCTATGATCAAGA+TGG - tig0023820:55629-55648 Msa1411550:intron 30.0%
GTCAAATCTATGATCAAGAT+GGG - tig0023820:55630-55649 Msa1411550:intron 30.0%
TCAAATCTATGATCAAGATG+GGG - tig0023820:55631-55650 Msa1411550:intron 30.0%
GGAATATAAATCCAAAGACT+GGG - tig0023820:55652-55671 Msa1411550:intron 30.0%
CACGAATTTGTACGTTGTTT+CGG + tig0023820:54087-54106 None:intergenic 35.0%
TTTGATTATCAGGGTTGTGA+TGG - tig0023820:54178-54197 Msa1411550:CDS 35.0%
GATGGATCGATATTATTGGA+TGG - tig0023820:54196-54215 Msa1411550:CDS 35.0%
!! CCTCTAACAGAGTTGATATT+AGG + tig0023820:54250-54269 None:intergenic 35.0%
CCTAATATCAACTCTGTTAG+AGG - tig0023820:54247-54266 Msa1411550:CDS 35.0%
TACAAGAAGAACAGAATCTC+TGG + tig0023820:54359-54378 None:intergenic 35.0%
GTTATGTTAGGACGAAAAGA+CGG - tig0023820:54627-54646 Msa1411550:intron 35.0%
AAAGACGGAACAATCTCAAA+TGG - tig0023820:54642-54661 Msa1411550:intron 35.0%
AAATGGATCTCTAGCAAATG+TGG - tig0023820:54659-54678 Msa1411550:intron 35.0%
! ATAGTATCTAGTGGGTCAAA+TGG + tig0023820:54696-54715 None:intergenic 35.0%
! ATAGGGCATGATCCTATTTT+TGG - tig0023820:54843-54862 Msa1411550:intron 35.0%
!!! TTGTTCAACTTTTCTGGAAC+AGG - tig0023820:55345-55364 Msa1411550:CDS 35.0%
! AGGACACAAATTTTGTAGGT+CGG + tig0023820:55406-55425 None:intergenic 35.0%
CAAAATTTGTGTCCTCAAAC+TGG - tig0023820:55411-55430 Msa1411550:CDS 35.0%
AAATTTGTGTCCTCAAACTG+GGG - tig0023820:55413-55432 Msa1411550:CDS 35.0%
!! TCGTTGTAGCTTTGTACTAA+AGG + tig0023820:55582-55601 None:intergenic 35.0%
! GATAATGCTACGCTTTTCTT+TGG - tig0023820:55600-55619 Msa1411550:intron 35.0%
GGGAATATAAATCCAAAGAC+TGG - tig0023820:55651-55670 Msa1411550:intron 35.0%
CACGAATTTGTACGTTGTTT+CGG + tig0023820:54087-54106 None:intergenic 35.0%
TTTGATTATCAGGGTTGTGA+TGG - tig0023820:54178-54197 Msa1411550:CDS 35.0%
GATGGATCGATATTATTGGA+TGG - tig0023820:54196-54215 Msa1411550:CDS 35.0%
!! CCTCTAACAGAGTTGATATT+AGG + tig0023820:54250-54269 None:intergenic 35.0%
CCTAATATCAACTCTGTTAG+AGG - tig0023820:54247-54266 Msa1411550:CDS 35.0%
TACAAGAAGAACAGAATCTC+TGG + tig0023820:54359-54378 None:intergenic 35.0%
GTTATGTTAGGACGAAAAGA+CGG - tig0023820:54627-54646 Msa1411550:intron 35.0%
AAAGACGGAACAATCTCAAA+TGG - tig0023820:54642-54661 Msa1411550:intron 35.0%
AAATGGATCTCTAGCAAATG+TGG - tig0023820:54659-54678 Msa1411550:intron 35.0%
! ATAGTATCTAGTGGGTCAAA+TGG + tig0023820:54696-54715 None:intergenic 35.0%
! ATAGGGCATGATCCTATTTT+TGG - tig0023820:54843-54862 Msa1411550:intron 35.0%
!!! TTGTTCAACTTTTCTGGAAC+AGG - tig0023820:55345-55364 Msa1411550:CDS 35.0%
! AGGACACAAATTTTGTAGGT+CGG + tig0023820:55406-55425 None:intergenic 35.0%
CAAAATTTGTGTCCTCAAAC+TGG - tig0023820:55411-55430 Msa1411550:CDS 35.0%
AAATTTGTGTCCTCAAACTG+GGG - tig0023820:55413-55432 Msa1411550:CDS 35.0%
!! TCGTTGTAGCTTTGTACTAA+AGG + tig0023820:55582-55601 None:intergenic 35.0%
! GATAATGCTACGCTTTTCTT+TGG - tig0023820:55600-55619 Msa1411550:intron 35.0%
GGGAATATAAATCCAAAGAC+TGG - tig0023820:55651-55670 Msa1411550:intron 35.0%
CATACATGTACATGCATGCA+TGG - tig0023820:53988-54007 Msa1411550:CDS 40.0%
GGATCGATATTATTGGATGG+TGG - tig0023820:54199-54218 Msa1411550:CDS 40.0%
TGATACAATCAAAACGGCAG+TGG - tig0023820:54282-54301 Msa1411550:CDS 40.0%
! TATAGTCAAGGAGCATGCAT+AGG - tig0023820:54439-54458 Msa1411550:intron 40.0%
TATAATGTTTGGCAGAGTGG+TGG - tig0023820:54591-54610 Msa1411550:intron 40.0%
CCTAACATAACACTCCATGA+AGG + tig0023820:54618-54637 None:intergenic 40.0%
! CCTTCATGGAGTGTTATGTT+AGG - tig0023820:54615-54634 Msa1411550:intron 40.0%
TTGCAAGACTAGACATTTGC+AGG + tig0023820:54908-54927 None:intergenic 40.0%
!!! GCAAGATGTCACTAGCTTTT+GGG - tig0023820:54937-54956 Msa1411550:CDS 40.0%
!!! GTTCGCTAGTTTTGAAGAGA+TGG + tig0023820:54997-55016 None:intergenic 40.0%
ACACAACTGCAGTTCTTGAT+AGG - tig0023820:55442-55461 Msa1411550:intron 40.0%
CATACATGTACATGCATGCA+TGG - tig0023820:53988-54007 Msa1411550:CDS 40.0%
GGATCGATATTATTGGATGG+TGG - tig0023820:54199-54218 Msa1411550:CDS 40.0%
TGATACAATCAAAACGGCAG+TGG - tig0023820:54282-54301 Msa1411550:CDS 40.0%
! TATAGTCAAGGAGCATGCAT+AGG - tig0023820:54439-54458 Msa1411550:intron 40.0%
TATAATGTTTGGCAGAGTGG+TGG - tig0023820:54591-54610 Msa1411550:intron 40.0%
CCTAACATAACACTCCATGA+AGG + tig0023820:54618-54637 None:intergenic 40.0%
! CCTTCATGGAGTGTTATGTT+AGG - tig0023820:54615-54634 Msa1411550:intron 40.0%
TTGCAAGACTAGACATTTGC+AGG + tig0023820:54908-54927 None:intergenic 40.0%
!!! GCAAGATGTCACTAGCTTTT+GGG - tig0023820:54937-54956 Msa1411550:CDS 40.0%
!!! GTTCGCTAGTTTTGAAGAGA+TGG + tig0023820:54997-55016 None:intergenic 40.0%
ACACAACTGCAGTTCTTGAT+AGG - tig0023820:55442-55461 Msa1411550:intron 40.0%
AACAGAATCTCTGGCAGCTA+TGG + tig0023820:54350-54369 None:intergenic 45.0%
! TCTAGTGGGTCAAATGGAGA+AGG + tig0023820:54690-54709 None:intergenic 45.0%
TGTGAGATTGAGCCCTACAT+TGG + tig0023820:54733-54752 None:intergenic 45.0%
CAAGACTAGACATTTGCAGG+TGG + tig0023820:54905-54924 None:intergenic 45.0%
!!! CGCAAGATGTCACTAGCTTT+TGG - tig0023820:54936-54955 Msa1411550:CDS 45.0%
!! TGTGAAGGTGCTCATACGAT+TGG - tig0023820:55291-55310 Msa1411550:CDS 45.0%
!! GTGAAGGTGCTCATACGATT+GGG - tig0023820:55292-55311 Msa1411550:CDS 45.0%
AATCCAAAGACTGGGTCTGA+TGG - tig0023820:55660-55679 Msa1411550:intron 45.0%
AACAGAATCTCTGGCAGCTA+TGG + tig0023820:54350-54369 None:intergenic 45.0%
! TCTAGTGGGTCAAATGGAGA+AGG + tig0023820:54690-54709 None:intergenic 45.0%
TGTGAGATTGAGCCCTACAT+TGG + tig0023820:54733-54752 None:intergenic 45.0%
CAAGACTAGACATTTGCAGG+TGG + tig0023820:54905-54924 None:intergenic 45.0%
!!! CGCAAGATGTCACTAGCTTT+TGG - tig0023820:54936-54955 Msa1411550:CDS 45.0%
!! TGTGAAGGTGCTCATACGAT+TGG - tig0023820:55291-55310 Msa1411550:CDS 45.0%
!! GTGAAGGTGCTCATACGATT+GGG - tig0023820:55292-55311 Msa1411550:CDS 45.0%
AATCCAAAGACTGGGTCTGA+TGG - tig0023820:55660-55679 Msa1411550:intron 45.0%
AGGTTCACCAGACAGTACAC+TGG - tig0023820:55365-55384 Msa1411550:CDS 50.0%
CCAGTTTCCAGTGTACTGTC+TGG + tig0023820:55375-55394 None:intergenic 50.0%
CCAGACAGTACACTGGAAAC+TGG - tig0023820:55372-55391 Msa1411550:CDS 50.0%
TTGTGTCCTCAAACTGGGGA+TGG - tig0023820:55417-55436 Msa1411550:CDS 50.0%
GTGTTTCCATCCCCAGTTTG+AGG + tig0023820:55426-55445 None:intergenic 50.0%
TCTCCATCAGACCCAGTCTT+TGG + tig0023820:55666-55685 None:intergenic 50.0%
CTGGGTCTGATGGAGAGATT+AGG - tig0023820:55670-55689 Msa1411550:intron 50.0%
AGGTTCACCAGACAGTACAC+TGG - tig0023820:55365-55384 Msa1411550:CDS 50.0%
CCAGTTTCCAGTGTACTGTC+TGG + tig0023820:55375-55394 None:intergenic 50.0%
CCAGACAGTACACTGGAAAC+TGG - tig0023820:55372-55391 Msa1411550:CDS 50.0%
TTGTGTCCTCAAACTGGGGA+TGG - tig0023820:55417-55436 Msa1411550:CDS 50.0%
GTGTTTCCATCCCCAGTTTG+AGG + tig0023820:55426-55445 None:intergenic 50.0%
TCTCCATCAGACCCAGTCTT+TGG + tig0023820:55666-55685 None:intergenic 50.0%
CTGGGTCTGATGGAGAGATT+AGG - tig0023820:55670-55689 Msa1411550:intron 50.0%
! GCAGTGGAGAGTGCGTGTAG+CGG - tig0023820:54298-54317 Msa1411550:CDS 60.0%
GGCAGAGTGGTGGTCCTTCA+TGG - tig0023820:54601-54620 Msa1411550:intron 60.0%
! GCAGTGGAGAGTGCGTGTAG+CGG - tig0023820:54298-54317 Msa1411550:CDS 60.0%
GGCAGAGTGGTGGTCCTTCA+TGG - tig0023820:54601-54620 Msa1411550:intron 60.0%
Chromosome Type Strat End Strand Name
tig0023820 gene 53915 55719 53915 ID=Msa1411550;Name=Msa1411550
tig0023820 mRNA 53915 55719 53915 ID=Msa1411550-mRNA-1;Parent=Msa1411550;Name=Msa1411550-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|1|1|1|4|0|273
tig0023820 exon 55672 55719 55672 ID=Msa1411550-mRNA-1:exon:20206;Parent=Msa1411550-mRNA-1
tig0023820 exon 55259 55444 55259 ID=Msa1411550-mRNA-1:exon:20205;Parent=Msa1411550-mRNA-1
tig0023820 exon 54863 55028 54863 ID=Msa1411550-mRNA-1:exon:20204;Parent=Msa1411550-mRNA-1
tig0023820 exon 53915 54336 53915 ID=Msa1411550-mRNA-1:exon:20203;Parent=Msa1411550-mRNA-1
tig0023820 CDS 55672 55719 55672 ID=Msa1411550-mRNA-1:cds;Parent=Msa1411550-mRNA-1
tig0023820 CDS 55259 55444 55259 ID=Msa1411550-mRNA-1:cds;Parent=Msa1411550-mRNA-1
tig0023820 CDS 54863 55028 54863 ID=Msa1411550-mRNA-1:cds;Parent=Msa1411550-mRNA-1
tig0023820 CDS 53915 54336 53915 ID=Msa1411550-mRNA-1:cds;Parent=Msa1411550-mRNA-1
Gene Sequence

>Msa1411550

ATGGGCGCTTCTTTGCTTCGTCTTCACTTTCATGATTGCTTCGTCAATGGTTGTGATGGATCGATATTATTGGATGGTGGTGATGATTTTGAAAAGTCTGCATTTCCTAATATCAACTCTGTTAGAGGATTTGATGTTGTTGATACAATCAAAACGGCAGTGGAGAGTGCGTGTAGCGGAGTTGTCTCATGTGCTGATATACTTGCCATAGCTGCCAGAGATTCTGTTCTTCTTAGTGGTGGTCCTTCATGGAGTGTTATGTTAGGACGAAAAGACGGAACAATCTCAAATGGATCTCTAGCAAATGTGGTTCTTCCTTCTCCATTTGACCCACTAGATACTATTGTTTCAAAGTTTACCAATGTAGGGCTCAATCTCACAGATGTTGTTTCTTTATCAGGTGCTCATACGATTGGGAGAGCAAGATGTGCACTGTTTAGCAATAGATTGTTCAACTTTTCTGGAACAGGTTCACCAGACAGTACACTGGAAACTGGTATGCTAACCGACCTACAAAATTTGTGTCCTCAAACTGGGGATGGAAACACAACTGCAGTTCTTGATAGGAACTCAACTGATCTCTTTGATAATCATTACTATAAGAACTTGCTTAATGGAAAGGGTCTTCTTAGTTCTGATCAGATTTTGATTTCTACTGATGAGGCAAATTCAACTTCTAAACCTTTAGTACAAAGCTACAACGATAATGCTACGCTTTTCTTTGGAGACTTTGTCAAATCTATGATCAAGATGGGGAATATAAATCCAAAGACTGGGTCTGATGGAGAGATTAGGAAGAGCTGTAGAGTGATAAATTCGTAG

Protein sequence

>Msa1411550

MGASLLRLHFHDCFVNGCDGSILLDGGDDFEKSAFPNINSVRGFDVVDTIKTAVESACSGVVSCADILAIAARDSVLLSGGPSWSVMLGRKDGTISNGSLANVVLPSPFDPLDTIVSKFTNVGLNLTDVVSLSGAHTIGRARCALFSNRLFNFSGTGSPDSTLETGMLTDLQNLCPQTGDGNTTAVLDRNSTDLFDNHYYKNLLNGKGLLSSDQILISTDEANSTSKPLVQSYNDNATLFFGDFVKSMIKMGNINPKTGSDGEIRKSCRVINS*