AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0470420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0470420 MtrunA17_Chr3g0124931 96.104 693 27 0 1 693 1 693 0.0 1398
Msa0470420 MtrunA17_Chr3g0130721 61.143 700 260 5 3 690 2 701 0.0 885
Msa0470420 MtrunA17_Chr3g0145581 48.324 716 349 7 7 702 9 723 0.0 707
Msa0470420 MtrunA17_Chr4g0037031 48.091 707 350 6 13 703 23 728 0.0 696
Msa0470420 MtrunA17_Chr2g0299161 51.385 722 303 15 6 687 9 722 0.0 693
Msa0470420 MtrunA17_Chr8g0342001 50.347 721 310 11 8 687 7 720 0.0 692
Msa0470420 MtrunA17_Chr2g0330291 51.336 711 297 12 18 687 21 723 0.0 683
Msa0470420 MtrunA17_Chr1g0152571 51.631 705 293 16 24 687 29 726 0.0 683
Msa0470420 MtrunA17_Chr1g0155701 49.153 708 317 12 26 694 29 732 0.0 670
Msa0470420 MtrunA17_Chr8g0372421 49.724 724 314 17 5 687 9 723 0.0 669
Msa0470420 MtrunA17_Chr3g0142001 50.352 711 300 14 26 692 28 729 0.0 669
Msa0470420 MtrunA17_Chr5g0404841 49.725 726 308 15 6 687 8 720 0.0 667
Msa0470420 MtrunA17_Chr2g0326481 48.295 733 332 12 12 703 8 734 0.0 667
Msa0470420 MtrunA17_Chr4g0029301 47.619 735 334 12 11 703 15 740 0.0 659
Msa0470420 MtrunA17_Chr3g0130711 47.390 728 334 12 7 687 5 730 0.0 628
Msa0470420 MtrunA17_Chr2g0301001 44.033 729 361 13 7 690 8 734 0.0 593
Msa0470420 MtrunA17_Chr8g0378221 43.860 741 338 15 25 695 49 781 0.0 590
Msa0470420 MtrunA17_Chr5g0406921 44.837 707 345 14 26 690 28 731 0.0 575
Msa0470420 MtrunA17_Chr5g0408371 45.084 712 343 16 26 695 28 733 0.0 571
Msa0470420 MtrunA17_Chr3g0077531 43.503 708 353 12 11 677 15 716 0.0 560
Msa0470420 MtrunA17_Chr2g0326491 49.035 518 212 7 11 478 7 522 7.46e-169 494
Msa0470420 MtrunA17_Chr2g0326441 59.011 283 114 1 11 293 7 287 2.31e-118 357
Msa0470420 MtrunA17_Chr2g0326451 39.813 427 205 11 323 703 25 445 5.22e-82 270
Msa0470420 MtrunA17_Chr5g0405781 41.743 218 100 2 145 362 21 211 5.86e-49 175
Msa0470420 MtrunA17_Chr4g0071281 44.571 175 89 3 476 642 10 184 9.05e-33 127
Msa0470420 MtrunA17_Chr2g0307981 31.746 252 152 6 453 690 59 304 5.24e-30 121
Msa0470420 MtrunA17_Chr4g0071291 36.970 165 63 3 25 186 21 147 1.06e-25 103
Msa0470420 MtrunA17_Chr8g0372581 41.135 141 62 3 147 287 9 128 5.45e-24 98.2
Msa0470420 MtrunA17_Chr2g0326521 33.333 234 96 8 504 703 1 208 2.67e-23 101
Msa0470420 MtrunA17_Chr2g0330191 29.254 335 195 9 42 345 70 393 2.81e-23 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0470420 AT1G77410.1 61.925 696 254 7 10 695 6 700 0.0 906
Msa0470420 AT1G77410.3 61.484 701 254 8 10 695 6 705 0.0 900
Msa0470420 AT5G63800.1 59.163 693 274 3 7 690 13 705 0.0 865
Msa0470420 AT1G77410.2 61.698 577 213 6 126 695 19 594 0.0 747
Msa0470420 AT1G77410.4 61.698 577 213 6 126 695 19 594 0.0 747
Msa0470420 AT3G13750.1 51.801 722 294 12 7 687 21 729 0.0 702
Msa0470420 AT4G26140.1 49.791 717 319 12 7 687 11 722 0.0 694
Msa0470420 AT4G35010.1 50.150 668 316 7 26 678 41 706 0.0 689
Msa0470420 AT3G52840.2 48.886 718 324 11 7 687 64 775 0.0 686
Msa0470420 AT3G52840.1 48.886 718 324 11 7 687 10 721 0.0 685
Msa0470420 AT2G16730.1 48.955 670 321 7 26 678 44 709 0.0 681
Msa0470420 AT4G26140.7 48.113 742 319 13 7 687 11 747 0.0 681
Msa0470420 AT5G56870.1 49.033 724 311 14 8 687 11 720 0.0 672
Msa0470420 AT4G36360.1 49.101 723 315 14 7 687 17 728 0.0 672
Msa0470420 AT4G36360.2 49.101 723 315 14 7 687 17 728 0.0 672
Msa0470420 AT2G28470.1 48.427 731 322 15 23 704 29 753 0.0 659
Msa0470420 AT2G28470.3 48.427 731 322 15 23 704 29 753 0.0 659
Msa0470420 AT1G45130.1 48.675 717 316 13 7 681 14 720 0.0 659
Msa0470420 AT2G28470.2 48.427 731 322 15 23 704 23 747 0.0 658
Msa0470420 AT2G28470.4 48.427 731 322 15 23 704 23 747 0.0 658
Msa0470420 AT4G26140.9 49.192 681 300 12 7 646 11 686 0.0 648
Msa0470420 AT5G63810.1 45.706 722 348 10 8 687 14 733 0.0 637
Msa0470420 AT4G38590.1 48.068 647 312 10 56 683 1 642 0.0 630
Msa0470420 AT2G28470.5 50.779 642 287 12 25 643 31 666 0.0 628
Msa0470420 AT4G38590.2 45.403 707 351 12 6 683 6 706 0.0 628
Msa0470420 AT2G32810.1 45.286 753 339 15 5 690 12 758 0.0 620
Msa0470420 AT2G32810.2 45.286 753 339 15 5 690 12 758 0.0 620
Msa0470420 AT4G26140.6 50.971 618 282 11 7 608 11 623 0.0 611
Msa0470420 AT4G26140.3 50.971 618 280 11 7 608 11 621 0.0 608
Msa0470420 AT4G26140.2 50.971 618 280 11 7 608 11 621 0.0 608
Msa0470420 AT5G20710.1 41.997 731 381 11 1 690 3 731 0.0 587
Msa0470420 AT1G31740.1 44.789 710 336 17 7 690 6 685 0.0 577
Msa0470420 AT4G26140.8 53.028 545 243 8 8 544 12 551 0.0 569
Msa0470420 AT1G45130.2 47.096 637 287 12 87 681 13 641 0.0 556
Msa0470420 AT4G26140.4 50.702 570 243 9 8 544 12 576 0.0 555
Msa0470420 AT4G26140.5 50.702 570 243 9 8 544 12 576 0.0 555
Msa0470420 AT5G20710.2 36.364 528 293 11 204 690 1 526 1.22e-110 348
Msa0470420 AT2G04060.1 32.213 357 172 8 293 643 23 315 5.44e-43 162
Msa0470420 AT2G04062.1 40.462 173 82 2 26 198 7 158 1.65e-38 140
Msa0470420 AT1G72990.3 28.967 397 238 9 36 402 18 400 2.23e-32 134
Msa0470420 AT1G72990.1 28.967 397 238 9 36 402 73 455 3.09e-32 133
Msa0470420 AT1G72990.4 28.967 397 238 9 36 402 73 455 3.09e-32 133
Msa0470420 AT1G72990.2 28.756 386 231 9 47 402 22 393 5.30e-29 123

Find 180 sgRNAs with CRISPR-Local

Find 463 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAAGTATCGGCAAAATT+AGG 0.136464 3_3:+72479357 None:intergenic
CACAGAATGTGCTGCCTTCT+TGG 0.153848 3_3:-72479754 Msa0470420:CDS
GGCTTCAGGTTCACTCTAAA+AGG 0.155139 3_3:-72476918 Msa0470420:intron
TTTCATCATGTTGACTATTT+TGG 0.164006 3_3:+72481144 None:intergenic
AAGGGACTTGCTTGGGTTAA+TGG 0.191945 3_3:-72477641 Msa0470420:CDS
GCAATGTGGGAGAAACTTTA+AGG 0.207416 3_3:-72480645 Msa0470420:CDS
ACTATATGTGGTACACTTTC+AGG 0.210126 3_3:-72479284 Msa0470420:intron
TCATACAAACTTACGTGTTT+TGG 0.226139 3_3:-72481903 Msa0470420:CDS
AGTTCAATTCAGCTGAAAAT+TGG 0.226601 3_3:-72479401 Msa0470420:CDS
TCCTTAAGATGTCCCCATTT+TGG 0.231023 3_3:+72480059 None:intergenic
AGTGCTTAACCTTGGTTCTA+TGG 0.238870 3_3:-72477666 Msa0470420:CDS
GCCAAGGTATTGGACGATAT+TGG 0.257316 3_3:-72477619 Msa0470420:CDS
GACATCTAATCCTCCTTCTT+TGG 0.263463 3_3:+72481924 None:intergenic
TTTGAAGTCCCACGGCCATT+TGG 0.264333 3_3:+72480911 None:intergenic
GTTTGGTTAGACAACCAAAA+TGG 0.279707 3_3:-72480073 Msa0470420:CDS
TAATCCTCCTTCTTTGGCTT+TGG 0.297718 3_3:+72481930 None:intergenic
TAAATGAAGGTTGGGTTGTT+AGG 0.307229 3_3:-72478117 Msa0470420:intron
TATGAACAAGGCAACATTAT+AGG 0.308128 3_3:+72480392 None:intergenic
ATTAATAGTTTACAAGCTTT+TGG 0.309185 3_3:-72480450 Msa0470420:intron
ATTGAGAGTGAATGCACTTA+TGG 0.315012 3_3:-72481486 Msa0470420:CDS
TTGAAGTCCCACGGCCATTT+GGG 0.331347 3_3:+72480912 None:intergenic
TCCCACTGTTGCACTAAGTA+TGG 0.332189 3_3:+72478792 None:intergenic
CTAAGAACAGATTGTGCATT+AGG 0.335456 3_3:+72479125 None:intergenic
TTGAAGTATCGGCAAAATTA+GGG 0.337323 3_3:+72479358 None:intergenic
GAAGGCTTGTTAGGAGAGTT+TGG 0.344500 3_3:+72480620 None:intergenic
TTGGGCAGCCCAACGAATAT+AGG 0.344539 3_3:+72480930 None:intergenic
ACCAAAATGGGGACATCTTA+AGG 0.354053 3_3:-72480060 Msa0470420:CDS
CAAAGTAAGTTTCGAGAGAA+TGG 0.355862 3_3:-72480958 Msa0470420:CDS
TAATTACTCATGGGGATATC+AGG 0.358295 3_3:-72478388 Msa0470420:intron
TGGGTTAATGGCCAAGGTAT+TGG 0.361101 3_3:-72477629 Msa0470420:CDS
AGTGATTCCTAAGGGGTTCC+CGG 0.372281 3_3:+72477077 None:intergenic
TCACTTCTAAATACAATTCC+AGG 0.376793 3_3:+72481302 None:intergenic
GTTATACTTGAAGAAGAAAC+CGG 0.376857 3_3:-72477096 Msa0470420:CDS
CTATGGGAAAGGGACTTGCT+TGG 0.378634 3_3:-72477649 Msa0470420:CDS
TAATTGTGGTTTCATTGCTC+TGG 0.381958 3_3:+72479425 None:intergenic
GCTGTAGGGGTCTACCATTA+TGG 0.382065 3_3:-72481337 Msa0470420:intron
TAAACCACTCACATGGTATC+AGG 0.384274 3_3:-72478025 Msa0470420:intron
CCAAGGTATTGGACGATATT+GGG 0.385483 3_3:-72477618 Msa0470420:CDS
AATATTTCGTATGAATTGCC+TGG 0.387602 3_3:-72479693 Msa0470420:CDS
TGTTGGTGAAATCAAAATCA+TGG 0.389952 3_3:-72484859 Msa0470420:exon
ATGTAGATTGAGAATGAATA+TGG 0.390011 3_3:-72480988 Msa0470420:intron
TAGTGGAAGGTTTGATTTAG+TGG 0.394049 3_3:-72481568 Msa0470420:CDS
TGTTCACAACCTCTACTTGA+TGG 0.396063 3_3:-72480014 Msa0470420:CDS
CTTCTGCAGTATGAGTTTAG+TGG 0.397314 3_3:-72481585 Msa0470420:intron
TATTCGTTGGGCTGCCCAAA+TGG 0.400359 3_3:-72480926 Msa0470420:CDS
GTCCATAGTGAAGGCTTGTT+AGG 0.404534 3_3:+72480611 None:intergenic
TTATATGTGACCCTTCGAAT+TGG 0.404622 3_3:-72481516 Msa0470420:CDS
AATTACTGAAATCTCTTCCT+TGG 0.408801 3_3:+72478406 None:intergenic
TATGGGAAAGGGACTTGCTT+GGG 0.409955 3_3:-72477648 Msa0470420:CDS
TTTGGTTAGACAACCAAAAT+GGG 0.416446 3_3:-72480072 Msa0470420:CDS
CTTCACTATGGACAGAGAAT+TGG 0.420589 3_3:-72480601 Msa0470420:CDS
TGGGCAGCCCAACGAATATA+GGG 0.423176 3_3:+72480931 None:intergenic
TTTACTCAAACCAGCAACTT+TGG 0.427160 3_3:+72478437 None:intergenic
TTATGGTTACATGATGTTCC+TGG 0.429910 3_3:-72481320 Msa0470420:CDS
AAAATGTCAATCTGATAAAC+GGG 0.436199 3_3:-72478828 Msa0470420:CDS
TTTCTAGAGACCAAAGTTGC+TGG 0.437416 3_3:-72478447 Msa0470420:CDS
TAGTGCAACAGTGGGATTGC+CGG 0.437529 3_3:-72478785 Msa0470420:intron
TTGAGAGTGAATGCACTTAT+GGG 0.439807 3_3:-72481485 Msa0470420:intron
CTCCTAACAAGCCTTCACTA+TGG 0.444788 3_3:-72480613 Msa0470420:CDS
TTGGGCTGCCCAAATGGCCG+TGG 0.445681 3_3:-72480920 Msa0470420:CDS
GAGAGACTGACCACTGGATC+AGG 0.446416 3_3:+72480850 None:intergenic
GAGGCTCCACTGGATGAATA+TGG 0.446906 3_3:-72480177 Msa0470420:intron
AATTGGATTGTTACATCCCT+AGG 0.447987 3_3:+72479720 None:intergenic
TAAACCTGGGATAGTATGAT+AGG 0.451854 3_3:+72481091 None:intergenic
TGTTGTGAAGGAGTTCCATC+TGG 0.453218 3_3:+72477581 None:intergenic
TGGGTTGCCCTATATTCGTT+GGG 0.460338 3_3:-72480938 Msa0470420:CDS
GGAACATCATGTAACCATAA+TGG 0.461861 3_3:+72481323 None:intergenic
AGTATTTCCTTTAGCTATAC+CGG 0.464149 3_3:+72476871 None:intergenic
CGTTCTTTCCTAAAATCGAC+TGG 0.470629 3_3:-72477129 Msa0470420:CDS
TCTGAAGCTGATCTCAAGTA+TGG 0.472062 3_3:+72480420 None:intergenic
AAAGTAAGTTTCGAGAGAAT+GGG 0.472636 3_3:-72480957 Msa0470420:CDS
ATGGGTTGCCCTATATTCGT+TGG 0.474004 3_3:-72480939 Msa0470420:CDS
GAAGAAACCGGGAACCCCTT+AGG 0.474106 3_3:-72477084 Msa0470420:CDS
TTAATTTCCAAAGCCAAAGA+AGG 0.474275 3_3:-72481937 Msa0470420:CDS
GTGCTTAACCTTGGTTCTAT+GGG 0.476524 3_3:-72477665 Msa0470420:CDS
GACTTCAAACCGGTGTGCCT+TGG 0.476862 3_3:-72480897 Msa0470420:CDS
GTGCATTCACTCTCAATGTA+TGG 0.478471 3_3:+72481492 None:intergenic
TTGGCTTTGGAAATTAAGTC+AGG 0.481878 3_3:+72481943 None:intergenic
CTTCTTCAAGTATAACAAGT+AGG 0.483081 3_3:+72477103 None:intergenic
GCTTCAGGTTCACTCTAAAA+GGG 0.485002 3_3:-72476917 Msa0470420:intron
AGAACATCGTTGGTCATTAA+CGG 0.485783 3_3:-72484753 Msa0470420:CDS
CCCAATATCGTCCAATACCT+TGG 0.486272 3_3:+72477618 None:intergenic
GTTGGTGAAATCAAAATCAT+GGG 0.486532 3_3:-72484858 Msa0470420:exon
AAGGAGTTCCATCTGGTTTG+TGG 0.487600 3_3:+72477588 None:intergenic
CAATGTGGGAGAAACTTTAA+GGG 0.489483 3_3:-72480644 Msa0470420:CDS
AACCTTGGTTCTATGGGAAA+GGG 0.490035 3_3:-72477659 Msa0470420:CDS
GAGATTTCAGTAATTACTCA+TGG 0.494226 3_3:-72478398 Msa0470420:CDS
TAACCTTGGTTCTATGGGAA+AGG 0.497639 3_3:-72477660 Msa0470420:CDS
AGTGGAAGGTTTGATTTAGT+GGG 0.498332 3_3:-72481567 Msa0470420:CDS
ATTAAAGAAATTCAAGCTCA+AGG 0.500012 3_3:-72481540 Msa0470420:CDS
AAGTGATAATGATCAATTCA+AGG 0.504392 3_3:-72481285 Msa0470420:intron
GCTGCCTTCTTGGAAAATAG+TGG 0.505645 3_3:-72479744 Msa0470420:CDS
GCCTTGTTCATAGCAAAGAA+AGG 0.509544 3_3:-72480381 Msa0470420:CDS
TTATTATGATGAGGCTCCAC+TGG 0.510643 3_3:-72480187 Msa0470420:CDS
GAACCAAGGTTAAGCACTAC+AGG 0.511347 3_3:+72477671 None:intergenic
AGTGAATTGAACCAGAGAAA+AGG 0.515748 3_3:+72484718 None:intergenic
AGTTGCTGGTTTGAGTAAAG+TGG 0.516443 3_3:-72478433 Msa0470420:CDS
ATGGCCGTGGGACTTCAAAC+CGG 0.524566 3_3:-72480907 Msa0470420:CDS
GTGTCTAGAGTGATTCCTAA+GGG 0.526469 3_3:+72477069 None:intergenic
CTATCCTCGTAGCACTCCTC+AGG 0.528740 3_3:-72484697 Msa0470420:intron
AAGACTACATTCTTGCAGCC+TGG 0.529766 3_3:+72479651 None:intergenic
CTACATTCTTGCAGCCTGGT+AGG 0.536592 3_3:+72479655 None:intergenic
CTTGGAAAATAGTGGACCTA+GGG 0.539564 3_3:-72479736 Msa0470420:CDS
GTGTCTCTTTGCACCGTCCA+TGG 0.539794 3_3:-72484795 Msa0470420:CDS
TCACGAGCCTCAACAAGGCC+AGG 0.541047 3_3:-72481875 Msa0470420:intron
CAATGTATGGTCCAATTCGA+AGG 0.542390 3_3:+72481505 None:intergenic
CTTGCTTGGGTTAATGGCCA+AGG 0.543132 3_3:-72477635 Msa0470420:CDS
AAGATACATCTGACTATATG+TGG 0.549097 3_3:-72479296 Msa0470420:CDS
AGATTTCAGTAATTACTCAT+GGG 0.549878 3_3:-72478397 Msa0470420:CDS
ATATTTCGTATGAATTGCCT+GGG 0.552300 3_3:-72479692 Msa0470420:CDS
AGGACCTATCATACTATCCC+AGG 0.553587 3_3:-72481095 Msa0470420:intron
ACCACATTCGATGCACCAGC+TGG 0.554238 3_3:-72477701 Msa0470420:CDS
TGTGTCTAGAGTGATTCCTA+AGG 0.556583 3_3:+72477068 None:intergenic
CAAGAAGGCAGCACATTCTG+TGG 0.556669 3_3:+72479755 None:intergenic
AAGTTATGTCAATTATTACA+TGG 0.562787 3_3:-72480358 Msa0470420:intron
TCCTTTCTTTGCTATGAACA+AGG 0.565995 3_3:+72480380 None:intergenic
AAGAATGTAGTCTTCAACAC+CGG 0.567336 3_3:-72479642 Msa0470420:CDS
GCTGAATTGAACTTTAATTG+TGG 0.567491 3_3:+72479411 None:intergenic
TCTTGGAAAATAGTGGACCT+AGG 0.570208 3_3:-72479737 Msa0470420:CDS
CAACAATATGCAAGTTACAA+TGG 0.571370 3_3:-72478854 Msa0470420:CDS
GAAACATACCATTGTTGTGA+AGG 0.573167 3_3:+72477569 None:intergenic
TCTTACAAGCAAAGAGCCAC+CGG 0.573249 3_3:-72476890 Msa0470420:CDS
CTGTGAGCCTAAGCTGAAGG+TGG 0.573454 3_3:+72479983 None:intergenic
TGGGCTGCCCAAATGGCCGT+GGG 0.573977 3_3:-72480919 Msa0470420:CDS
CATGCAATGGCATGCAATGT+GGG 0.574956 3_3:-72480658 Msa0470420:CDS
ACTCAAACCACCTTCAGCTT+AGG 0.578526 3_3:-72479990 Msa0470420:CDS
TATCAAAATTAGTTCCTCCA+TGG 0.578938 3_3:+72480238 None:intergenic
ACGAATTTGATGCAGTACCA+TGG 0.579385 3_3:-72480255 Msa0470420:intron
TTGCAAATCTATTCAGTCAG+TGG 0.580451 3_3:-72478087 Msa0470420:CDS
CGTAGGTAACATTGCCACCA+TGG 0.581586 3_3:+72484778 None:intergenic
GATCCTGTAGTGCTTAACCT+TGG 0.586671 3_3:-72477674 Msa0470420:CDS
TCCATACTTAGTGCAACAGT+GGG 0.588438 3_3:-72478793 Msa0470420:CDS
TGCAGTATGAGTTTAGTGGA+AGG 0.589406 3_3:-72481581 Msa0470420:intron
GGTAACATTGCCACCATGGA+CGG 0.589509 3_3:+72484782 None:intergenic
ATTTCCAAAGCCAAAGAAGG+AGG 0.589753 3_3:-72481934 Msa0470420:CDS
CAATTCTCTGTCCATAGTGA+AGG 0.589841 3_3:+72480602 None:intergenic
GTATCTTTCCACAAACCAGA+TGG 0.590713 3_3:-72477596 Msa0470420:CDS
AGGATACTGATTGATTTCCC+AGG 0.591043 3_3:+72479675 None:intergenic
GAGGTTACCTGGCCTTGTTG+AGG 0.591838 3_3:+72481868 None:intergenic
GTTTGAGTTCCATCAAGTAG+AGG 0.592892 3_3:+72480005 None:intergenic
TACCTACGACAGAACATCGT+TGG 0.596916 3_3:-72484763 Msa0470420:CDS
TTGCTGTGAGCCTAAGCTGA+AGG 0.597462 3_3:+72479980 None:intergenic
ATGCAGATCAACGCATGCAA+TGG 0.599303 3_3:-72480671 Msa0470420:intron
CTCCATACTTAGTGCAACAG+TGG 0.602703 3_3:-72478794 Msa0470420:CDS
GTGGATCAAGTAAAGTTCAG+TGG 0.607801 3_3:-72478068 Msa0470420:CDS
TTAACTGTAGGTTCTGCACA+TGG 0.608812 3_3:-72478883 Msa0470420:intron
GCCAGCTGGTGCATCGAATG+TGG 0.611606 3_3:+72477700 None:intergenic
ACTACAGGATCATTGCCAGC+TGG 0.612769 3_3:+72477686 None:intergenic
AATAACAGCTTATTATGATG+AGG 0.614024 3_3:-72480196 Msa0470420:CDS
TCTTGTTTACACATCATCCA+AGG 0.616222 3_3:+72480880 None:intergenic
GATTTCAGTAATTACTCATG+GGG 0.616447 3_3:-72478396 Msa0470420:CDS
ACCATACCATATTCATCCAG+TGG 0.618114 3_3:+72480171 None:intergenic
GTTCTTAGTATATACAGTCA+AGG 0.620590 3_3:-72479110 Msa0470420:CDS
ATTTCCTTTAGCTATACCGG+TGG 0.628688 3_3:+72476874 None:intergenic
AAATCAATCAGTATCCTACC+AGG 0.632250 3_3:-72479669 Msa0470420:CDS
AGCTGTTATTATGAAAGCAG+AGG 0.636343 3_3:+72480209 None:intergenic
AGTATCGGCAAAATTAGGGA+TGG 0.638859 3_3:+72479362 None:intergenic
TTGAGTAAAGTGGAAGTCCA+AGG 0.642100 3_3:-72478423 Msa0470420:CDS
AAATCAAAATCATGGGAGAG+TGG 0.642102 3_3:-72484851 Msa0470420:exon
AATGTATGGTCCAATTCGAA+GGG 0.643269 3_3:+72481506 None:intergenic
TGTAGTCTTCAACACCGGCA+AGG 0.643630 3_3:-72479637 Msa0470420:intron
ATGGAACTCCTTCACAACAA+TGG 0.646963 3_3:-72477577 Msa0470420:intron
GTTCTTTCCTAAAATCGACT+GGG 0.647340 3_3:-72477128 Msa0470420:CDS
GTCCCTTTCCCATAGAACCA+AGG 0.648226 3_3:+72477657 None:intergenic
CACACCGGTTTGAAGTCCCA+CGG 0.651964 3_3:+72480903 None:intergenic
AGATGATGCTCCTGATCCAG+TGG 0.653215 3_3:-72480860 Msa0470420:intron
AATCTTCACGAGCCTCAACA+AGG 0.655545 3_3:-72481880 Msa0470420:CDS
ACACATCATCCAAGGCACAC+CGG 0.656038 3_3:+72480888 None:intergenic
GACCAACGATGTTCTGTCGT+AGG 0.656925 3_3:+72484761 None:intergenic
GCATGCAATGGCATGCAATG+TGG 0.659047 3_3:-72480659 Msa0470420:CDS
TTATACTTGAAGAAGAAACC+GGG 0.659840 3_3:-72477095 Msa0470420:CDS
TCAAAATCATGGGAGAGTGG+TGG 0.675828 3_3:-72484848 Msa0470420:exon
GCTCTACTAAACCACTCACA+TGG 0.681185 3_3:-72478032 Msa0470420:CDS
TTGGTTAGACAACCAAAATG+GGG 0.683195 3_3:-72480071 Msa0470420:CDS
TCTCTTTGCACCGTCCATGG+TGG 0.685695 3_3:-72484792 Msa0470420:CDS
AATGTGGGAGAAACTTTAAG+GGG 0.688593 3_3:-72480643 Msa0470420:CDS
TGTCTAGAGTGATTCCTAAG+GGG 0.698523 3_3:+72477070 None:intergenic
ATTACCTGATACCATGTGAG+TGG 0.707159 3_3:+72478021 None:intergenic
AATTTGATGCAGTACCATGG+AGG 0.742597 3_3:-72480252 Msa0470420:intron
CGTACCTGAGGAGTGCTACG+AGG 0.747266 3_3:+72484693 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAATTAAATAATAT+TGG + chr3_3:72478438-72478457 None:intergenic 0.0%
!!! AAGTTTTTTTTTTTTTTTTG+AGG - chr3_3:72477220-72477239 Msa0470420:intron 10.0%
!! TCATATATGATTAATAAATT+TGG - chr3_3:72477667-72477686 Msa0470420:CDS 10.0%
!! TCATATTTGATTAATAAATT+TGG - chr3_3:72477770-72477789 Msa0470420:intron 10.0%
!! TAAAATAAAGAAAAAAGAAT+TGG - chr3_3:72477608-72477627 Msa0470420:CDS 10.0%
!! TATTAGTTAAACTATATTAT+CGG - chr3_3:72478296-72478315 Msa0470420:intron 10.0%
!! AAATAATTAAATAATATTGG+AGG + chr3_3:72478435-72478454 None:intergenic 10.0%
!! AATTTGATATGTTAATATTT+GGG - chr3_3:72482876-72482895 Msa0470420:intron 10.0%
!! TTCGTTAAAAAAAATATTTA+CGG - chr3_3:72484039-72484058 Msa0470420:intron 10.0%
!! TCACATATGAAAAATAAATT+TGG - chr3_3:72477564-72477583 Msa0470420:intron 15.0%
!!! AAAAGAATTGGTTTTTTTTA+AGG - chr3_3:72477825-72477844 Msa0470420:intron 15.0%
!!! TAAAATTAAGTCATAGTTTT+TGG + chr3_3:72477882-72477901 None:intergenic 15.0%
!! GTATACTTCATAAATAAAAT+TGG + chr3_3:72478056-72478075 None:intergenic 15.0%
!! ATTAGTTAAACTATATTATC+GGG - chr3_3:72478297-72478316 Msa0470420:intron 15.0%
!! TGATATATATAACTAACAAT+TGG + chr3_3:72478336-72478355 None:intergenic 15.0%
!! CGATATTATTAATTAAGATT+AGG - chr3_3:72478372-72478391 Msa0470420:intron 15.0%
!! AAGGAAAAAAAAACTTTATA+AGG - chr3_3:72478498-72478517 Msa0470420:intron 15.0%
!! AGGAAAAAAAAACTTTATAA+GGG - chr3_3:72478499-72478518 Msa0470420:intron 15.0%
!!! ATTAGAATATGATATGATTT+TGG - chr3_3:72479118-72479137 Msa0470420:CDS 15.0%
!! TCTAATGGTTAAAAAAAAAT+TGG - chr3_3:72479346-72479365 Msa0470420:CDS 15.0%
!!! TTACATAATTTGTATGAATT+TGG - chr3_3:72479710-72479729 Msa0470420:CDS 15.0%
!!! ATATTTGAAATTGTTTTTGT+TGG - chr3_3:72480762-72480781 Msa0470420:intron 15.0%
!! CAATTTGATATGTTAATATT+TGG - chr3_3:72482875-72482894 Msa0470420:intron 15.0%
!!! TAATTTTTGTAACTTATTAG+TGG + chr3_3:72483093-72483112 None:intergenic 15.0%
!!! AGATTATCTATGAATTTTTT+AGG + chr3_3:72483837-72483856 None:intergenic 15.0%
!! AAAAAATTCATAGATAATCT+TGG - chr3_3:72483837-72483856 Msa0470420:intron 15.0%
!!! TAATTTTCTATTTTTCTTCA+CGG - chr3_3:72484550-72484569 Msa0470420:intron 15.0%
!!! TTATTGTATGTTTTTAAAGC+TGG - chr3_3:72477312-72477331 Msa0470420:intron 20.0%
!! GTTATATTTCTTACCTAATA+AGG + chr3_3:72477414-72477433 None:intergenic 20.0%
!!! GTTTTATAATTCATTCAAGA+TGG + chr3_3:72477447-72477466 None:intergenic 20.0%
!!! TTCTTATGTTTTATCATTGA+TGG - chr3_3:72478114-72478133 Msa0470420:intron 20.0%
!!! CTAATTTTATATGTTTCACA+TGG - chr3_3:72478175-72478194 Msa0470420:intron 20.0%
!! AATTAAAAACTCTTTCTCAA+GGG + chr3_3:72478206-72478225 None:intergenic 20.0%
!! TAATTAAAAACTCTTTCTCA+AGG + chr3_3:72478207-72478226 None:intergenic 20.0%
!! ATTCACATAATTTCAGAAAA+AGG + chr3_3:72478263-72478282 None:intergenic 20.0%
!! TTAGTTAAACTATATTATCG+GGG - chr3_3:72478298-72478317 Msa0470420:intron 20.0%
!!! ATATGATATGATTTTGGTTT+TGG - chr3_3:72479124-72479143 Msa0470420:CDS 20.0%
!!! TATGATATGATTTTGGTTTT+GGG - chr3_3:72479125-72479144 Msa0470420:CDS 20.0%
!!! TCATCTTTTTCTATAAAAGA+AGG - chr3_3:72479515-72479534 Msa0470420:intron 20.0%
!!! ATTTTTAAGTAATACTCGAT+TGG + chr3_3:72479571-72479590 None:intergenic 20.0%
!! CAAATTATCTTGATATATGT+AGG - chr3_3:72479659-72479678 Msa0470420:CDS 20.0%
!!! GTCATTTTGAAGAATTATTT+CGG + chr3_3:72479687-72479706 None:intergenic 20.0%
!! ATGCATAATGACATAAATAT+TGG + chr3_3:72479776-72479795 None:intergenic 20.0%
!! ACAATTTCAAATATTTGTAC+TGG + chr3_3:72480756-72480775 None:intergenic 20.0%
!!! TAAAAGAAAAACTGCAATTT+TGG + chr3_3:72481261-72481280 None:intergenic 20.0%
!!! ATTAATAGTTTACAAGCTTT+TGG - chr3_3:72481346-72481365 Msa0470420:intron 20.0%
!! AAGTTATGTCAATTATTACA+TGG - chr3_3:72481438-72481457 Msa0470420:intron 20.0%
!! ACTAGTACTACTTAAATAAA+AGG - chr3_3:72481889-72481908 Msa0470420:CDS 20.0%
!!! CATACGAAATATTTTGAAAT+TGG + chr3_3:72482096-72482115 None:intergenic 20.0%
!! ATAAAATTTAGTGAAACTGA+AGG - chr3_3:72482301-72482320 Msa0470420:intron 20.0%
!!! ATATTTTTTTATGTTCGTGT+AGG - chr3_3:72482330-72482349 Msa0470420:intron 20.0%
!! TATCAAATTGTACAATAGAA+AGG + chr3_3:72482865-72482884 None:intergenic 20.0%
!! AAAAATGTCAATCTGATAAA+CGG - chr3_3:72482967-72482986 Msa0470420:intron 20.0%
!!! TGTAATCCATAATCTTATTT+TGG + chr3_3:72483289-72483308 None:intergenic 20.0%
!!! GATGTAGAATTTTTAAATGA+AGG - chr3_3:72483666-72483685 Msa0470420:intron 20.0%
!!! TAGAATTTTTAAATGAAGGT+TGG - chr3_3:72483670-72483689 Msa0470420:intron 20.0%
!!! AGAATTTTTAAATGAAGGTT+GGG - chr3_3:72483671-72483690 Msa0470420:intron 20.0%
!!! GAATTTTTTAGGAAAGATAA+TGG + chr3_3:72483826-72483845 None:intergenic 20.0%
!! ACTAATATTTATTTACGTGT+TGG - chr3_3:72484065-72484084 Msa0470420:intron 20.0%
!! CTAATATTTATTTACGTGTT+GGG - chr3_3:72484066-72484085 Msa0470420:intron 20.0%
!! TAAACATTCTACATATTTCA+TGG + chr3_3:72484331-72484350 None:intergenic 20.0%
!!! CAACTGATATTTTTTTATTC+AGG - chr3_3:72484632-72484651 Msa0470420:intron 20.0%
!! AGAATTGATATACCATTATT+TGG - chr3_3:72484857-72484876 Msa0470420:exon 20.0%
!!! GAAACATTCTTTACTTTTGT+TGG - chr3_3:72476920-72476939 Msa0470420:intron 25.0%
!!! CATATATATCCTGTGTTTTT+TGG - chr3_3:72477133-72477152 Msa0470420:CDS 25.0%
!!! TCTTTTAGAAAAGAGTAAAG+TGG + chr3_3:72477269-72477288 None:intergenic 25.0%
! AACATATGTAAGAAAAAGAG+AGG - chr3_3:72477352-72477371 Msa0470420:intron 25.0%
! TTATTCTCATTGTCCTTATT+AGG - chr3_3:72477398-72477417 Msa0470420:intron 25.0%
! TTATAATTCATTCAAGATGG+AGG + chr3_3:72477444-72477463 None:intergenic 25.0%
!!! AATTAAGTCATAGTTTTTGG+AGG + chr3_3:72477879-72477898 None:intergenic 25.0%
! TTACAATAATGTGTGTAACA+TGG - chr3_3:72478026-72478045 Msa0470420:CDS 25.0%
! TACAATAATGTGTGTAACAT+GGG - chr3_3:72478027-72478046 Msa0470420:CDS 25.0%
!! TTTAATTTCTCAGTGAATCT+AGG - chr3_3:72478405-72478424 Msa0470420:CDS 25.0%
!! AATAACGTGTAGCATATTTT+TGG - chr3_3:72478544-72478563 Msa0470420:intron 25.0%
!! TTTCACAGGTTCATTTTAAA+CGG + chr3_3:72478602-72478621 None:intergenic 25.0%
! AAATGAACCTGTGAAAATAT+TGG - chr3_3:72478606-72478625 Msa0470420:intron 25.0%
! AGAGGGTAATTAAAATTTCA+CGG + chr3_3:72478851-72478870 None:intergenic 25.0%
!!! GGTTATATCTTTGTTTTCTA+TGG - chr3_3:72478919-72478938 Msa0470420:intron 25.0%
!!! ATGGCTTTTTGTTATCATTT+TGG - chr3_3:72478938-72478957 Msa0470420:intron 25.0%
!! TGGTAACTGATTTAATCTAA+TGG - chr3_3:72479331-72479350 Msa0470420:CDS 25.0%
! AAAAAAAAATTGGTCCATCT+TGG - chr3_3:72479356-72479375 Msa0470420:CDS 25.0%
! AATCATCTAAGTAAGTTCAA+AGG - chr3_3:72479487-72479506 Msa0470420:intron 25.0%
! ATGTACGTAACCAAAAAAAA+AGG - chr3_3:72479589-72479608 Msa0470420:intron 25.0%
!!! ATCTTTGAAGCCTTTTTTTT+TGG + chr3_3:72479602-72479621 None:intergenic 25.0%
!! TTTTCATTCTCAAATTGTCT+TGG - chr3_3:72479733-72479752 Msa0470420:CDS 25.0%
! ACATAAATATTGGAACCTAT+AGG + chr3_3:72479766-72479785 None:intergenic 25.0%
!!! GTTCATAATTTTAACAGATG+TGG - chr3_3:72479830-72479849 Msa0470420:intron 25.0%
! ATTATATTTATGCACCAATG+AGG + chr3_3:72479950-72479969 None:intergenic 25.0%
! AAAATAGATGATAAAACACG+AGG + chr3_3:72479977-72479996 None:intergenic 25.0%
! TTGTCCAAAAAAAAAATGCA+TGG - chr3_3:72480171-72480190 Msa0470420:intron 25.0%
!!! ACAACCATGCATTTTTTTTT+TGG + chr3_3:72480178-72480197 None:intergenic 25.0%
! ATTAAAGAAATTCAAGCTCA+AGG - chr3_3:72480256-72480275 Msa0470420:intron 25.0%
! ATGTAGCAATGGAAAATATT+TGG + chr3_3:72480411-72480430 None:intergenic 25.0%
!!! TTTCTTCTAAAATGTAGCAA+TGG + chr3_3:72480422-72480441 None:intergenic 25.0%
!! AAGTGATAATGATCAATTCA+AGG - chr3_3:72480511-72480530 Msa0470420:intron 25.0%
!! AACAAAAGTTATTGGTAGTT+TGG + chr3_3:72480539-72480558 None:intergenic 25.0%
!!! TTTCATCATGTTGACTATTT+TGG + chr3_3:72480655-72480674 None:intergenic 25.0%
! ATATTCATTCTCAATCTACA+TGG + chr3_3:72480809-72480828 None:intergenic 25.0%
! ATGTAGATTGAGAATGAATA+TGG - chr3_3:72480808-72480827 Msa0470420:intron 25.0%
! CTCTCAAGTATTATTTATCA+TGG - chr3_3:72480964-72480983 Msa0470420:CDS 25.0%
! CAAGTATTATTTATCATGGA+TGG - chr3_3:72480968-72480987 Msa0470420:CDS 25.0%
! TAAAACTCATGAAACTACTT+AGG + chr3_3:72481048-72481067 None:intergenic 25.0%
! AGCAAATTATCTTATCTAAC+TGG - chr3_3:72481297-72481316 Msa0470420:CDS 25.0%
!!! GAATTTCTGCTTATTTTTCT+TGG - chr3_3:72481507-72481526 Msa0470420:CDS 25.0%
!!! AGGAACTAATTTTGATAGAT+TGG - chr3_3:72481564-72481583 Msa0470420:CDS 25.0%
! AATAACAGCTTATTATGATG+AGG - chr3_3:72481600-72481619 Msa0470420:intron 25.0%
! TAATTAAGAATGAATCTTCC+TGG - chr3_3:72481843-72481862 Msa0470420:intron 25.0%
!!! CTCATCGATTTTAAAAGTAA+TGG + chr3_3:72482273-72482292 None:intergenic 25.0%
! GATAGGAAAAAAACATCTTT+GGG - chr3_3:72482787-72482806 Msa0470420:intron 25.0%
!!! CTATACATGTTTTTAACTGT+AGG - chr3_3:72482901-72482920 Msa0470420:intron 25.0%
! AAAATGTCAATCTGATAAAC+GGG - chr3_3:72482968-72482987 Msa0470420:intron 25.0%
! TTAACAATTGAGACAATTAC+CGG + chr3_3:72483033-72483052 None:intergenic 25.0%
!! CTTTCCTTTTTATTCATCAT+CGG - chr3_3:72483054-72483073 Msa0470420:intron 25.0%
! TGATAGCCAAAATAAGATTA+TGG - chr3_3:72483280-72483299 Msa0470420:intron 25.0%
!! TTCTTTTTACATGAAGAACT+CGG - chr3_3:72483321-72483340 Msa0470420:intron 25.0%
! AGATTTCAGTAATTACTCAT+GGG - chr3_3:72483399-72483418 Msa0470420:intron 25.0%
!! TTCTTATACATTTTAAGCAG+TGG + chr3_3:72483579-72483598 None:intergenic 25.0%
! AAATTCATAGATAATCTTGG+AGG - chr3_3:72483840-72483859 Msa0470420:intron 25.0%
! AATTCATAGATAATCTTGGA+GGG - chr3_3:72483841-72483860 Msa0470420:intron 25.0%
!!! TATCTCAATCTTTCTAAGAT+TGG - chr3_3:72483927-72483946 Msa0470420:intron 25.0%
! TGTAGAATGTTTATAAACCA+TGG - chr3_3:72484338-72484357 Msa0470420:intron 25.0%
! ATGTTTATAAACCATGGAAA+AGG - chr3_3:72484344-72484363 Msa0470420:intron 25.0%
! TTGAGCAAAGAGTTATAAAA+AGG + chr3_3:72484428-72484447 None:intergenic 25.0%
!! CAACATTTTCATTTCCATTT+AGG - chr3_3:72484445-72484464 Msa0470420:intron 25.0%
! GTTGTAAGTAAATAAATGCT+TGG + chr3_3:72484616-72484635 None:intergenic 25.0%
!! ATGATGTGTGATCTTTTAAA+TGG + chr3_3:72484780-72484799 None:intergenic 25.0%
! TGTTGGTGAAATCAAAATCA+TGG - chr3_3:72476937-72476956 Msa0470420:intron 30.0%
! GTTGGTGAAATCAAAATCAT+GGG - chr3_3:72476938-72476957 Msa0470420:intron 30.0%
! CAGAGAAAAGGATTTTATGA+TGG + chr3_3:72477069-72477088 None:intergenic 30.0%
! CATCATAAAATCCTTTTCTC+TGG - chr3_3:72477067-72477086 Msa0470420:intron 30.0%
!! ACTTTAGAACCAAAAAACAC+AGG + chr3_3:72477145-72477164 None:intergenic 30.0%
AAACATGAGTGCTTATCATA+TGG + chr3_3:72477293-72477312 None:intergenic 30.0%
TTACTTGTATTTCATTCGAG+AGG - chr3_3:72477899-72477918 Msa0470420:intron 30.0%
TACTTGTATTTCATTCGAGA+GGG - chr3_3:72477900-72477919 Msa0470420:intron 30.0%
ACAATAATGTGTGTAACATG+GGG - chr3_3:72478028-72478047 Msa0470420:CDS 30.0%
TTTATATGTTTCACATGGTG+AGG - chr3_3:72478180-72478199 Msa0470420:intron 30.0%
GGAATATCATACTCACATAA+TGG + chr3_3:72478242-72478261 None:intergenic 30.0%
GCAAAACTAATGGTTTAACA+AGG - chr3_3:72478479-72478498 Msa0470420:intron 30.0%
TCCTTAATTGCACTAGTTAT+CGG - chr3_3:72478574-72478593 Msa0470420:intron 30.0%
! TCTTAGACCAATATTTTCAC+AGG + chr3_3:72478616-72478635 None:intergenic 30.0%
! GTGAAAATATTGGTCTAAGA+TGG - chr3_3:72478616-72478635 Msa0470420:intron 30.0%
TTAATGACCATGATAAGGTT+TGG + chr3_3:72478677-72478696 None:intergenic 30.0%
AGTGTTTAATGACCATGATA+AGG + chr3_3:72478682-72478701 None:intergenic 30.0%
AACAAAGATATAACCCTCTA+TGG + chr3_3:72478914-72478933 None:intergenic 30.0%
TTATAGAAACACCATTTGCA+AGG + chr3_3:72479043-72479062 None:intergenic 30.0%
TAATATAGAGAAGTAGTAGC+TGG - chr3_3:72479060-72479079 Msa0470420:intron 30.0%
AATATAGAGAAGTAGTAGCT+GGG - chr3_3:72479061-72479080 Msa0470420:intron 30.0%
! TTCTAATTTTCTACTGCAGA+TGG + chr3_3:72479105-72479124 None:intergenic 30.0%
!!! TGATTTTGGTTTTGGGTTTT+TGG - chr3_3:72479132-72479151 Msa0470420:CDS 30.0%
!!! GATTTTGGTTTTGGGTTTTT+GGG - chr3_3:72479133-72479152 Msa0470420:CDS 30.0%
! TGAAACACTTTGAAAGAGAA+AGG - chr3_3:72479217-72479236 Msa0470420:intron 30.0%
!! AGATGGACTATGATAAGAAT+TGG - chr3_3:72479311-72479330 Msa0470420:CDS 30.0%
TGTAAGGTCTATGATAACTA+GGG + chr3_3:72479414-72479433 None:intergenic 30.0%
TTGTAAGGTCTATGATAACT+AGG + chr3_3:72479415-72479434 None:intergenic 30.0%
TCTTATCTAACACGATTGTA+AGG + chr3_3:72479430-72479449 None:intergenic 30.0%
TTAATTTCCAAAGCCAAAGA+AGG - chr3_3:72479859-72479878 Msa0470420:intron 30.0%
! TCATACAAACTTACGTGTTT+TGG - chr3_3:72479893-72479912 Msa0470420:intron 30.0%
ATACTTGCAAACAAAATGCA+TGG - chr3_3:72480145-72480164 Msa0470420:intron 30.0%
GTGCTGAAAATTAAATCTGT+GGG + chr3_3:72480345-72480364 None:intergenic 30.0%
TGTGCTGAAAATTAAATCTG+TGG + chr3_3:72480346-72480365 None:intergenic 30.0%
!!! AACTCTCAATTTTTTGCTGT+AGG - chr3_3:72480444-72480463 Msa0470420:CDS 30.0%
!!! ACTCTCAATTTTTTGCTGTA+GGG - chr3_3:72480445-72480464 Msa0470420:CDS 30.0%
TCACTTCTAAATACAATTCC+AGG + chr3_3:72480497-72480516 None:intergenic 30.0%
GGAAGGAAAACAAAAGTTAT+TGG + chr3_3:72480547-72480566 None:intergenic 30.0%
ACTACCAAAAATTGAATGCA+TGG + chr3_3:72480568-72480587 None:intergenic 30.0%
GTGAAACTGTCATTAAGAAA+AGG + chr3_3:72480616-72480635 None:intergenic 30.0%
TTGCATTGAAGTTTAAACCT+GGG + chr3_3:72480721-72480740 None:intergenic 30.0%
AAAGTAAGTTTCGAGAGAAT+GGG - chr3_3:72480839-72480858 Msa0470420:intron 30.0%
CTTCTAAACGATTCAACATT+AGG + chr3_3:72481071-72481090 None:intergenic 30.0%
! GATGTCATTTACTTAACGTT+TGG - chr3_3:72481323-72481342 Msa0470420:CDS 30.0%
! AATAGTTTACAAGCTTTTGG+TGG - chr3_3:72481349-72481368 Msa0470420:intron 30.0%
TATGAACAAGGCAACATTAT+AGG + chr3_3:72481407-72481426 None:intergenic 30.0%
TATCAAAATTAGTTCCTCCA+TGG + chr3_3:72481561-72481580 None:intergenic 30.0%
TTTGGTTAGACAACCAAAAT+GGG - chr3_3:72481724-72481743 Msa0470420:intron 30.0%
AATATTTCGTATGAATTGCC+TGG - chr3_3:72482103-72482122 Msa0470420:intron 30.0%
ATATTTCGTATGAATTGCCT+GGG - chr3_3:72482104-72482123 Msa0470420:intron 30.0%
GCTGAATTGAACTTTAATTG+TGG + chr3_3:72482388-72482407 None:intergenic 30.0%
AGTTCAATTCAGCTGAAAAT+TGG - chr3_3:72482395-72482414 Msa0470420:intron 30.0%
!! TTGAAGTATCGGCAAAATTA+GGG + chr3_3:72482441-72482460 None:intergenic 30.0%
!! TTTGAAGTATCGGCAAAATT+AGG + chr3_3:72482442-72482461 None:intergenic 30.0%
AAGATACATCTGACTATATG+TGG - chr3_3:72482500-72482519 Msa0470420:intron 30.0%
TGTCAACAATCATCTTAGTA+AGG + chr3_3:72482613-72482632 None:intergenic 30.0%
TTGACATGTTGAATTGTTGA+TGG - chr3_3:72482627-72482646 Msa0470420:intron 30.0%
GTTCTTAGTATATACAGTCA+AGG - chr3_3:72482686-72482705 Msa0470420:intron 30.0%
!!! GATGTTTTTTTCCTATCCTA+AGG + chr3_3:72482784-72482803 None:intergenic 30.0%
GGATAGGAAAAAAACATCTT+TGG - chr3_3:72482786-72482805 Msa0470420:intron 30.0%
CAACAATATGCAAGTTACAA+TGG - chr3_3:72482942-72482961 Msa0470420:intron 30.0%
GTTGACAAATACTATGAAGA+TGG + chr3_3:72483125-72483144 None:intergenic 30.0%
! TCTTTTTACATGAAGAACTC+GGG - chr3_3:72483322-72483341 Msa0470420:intron 30.0%
AATTACTGAAATCTCTTCCT+TGG + chr3_3:72483393-72483412 None:intergenic 30.0%
GAGATTTCAGTAATTACTCA+TGG - chr3_3:72483398-72483417 Msa0470420:intron 30.0%
GATTTCAGTAATTACTCATG+GGG - chr3_3:72483400-72483419 Msa0470420:intron 30.0%
TGGATAATGATAGTTTCAAG+GGG + chr3_3:72483559-72483578 None:intergenic 30.0%
GTGGATAATGATAGTTTCAA+GGG + chr3_3:72483560-72483579 None:intergenic 30.0%
AGTGGATAATGATAGTTTCA+AGG + chr3_3:72483561-72483580 None:intergenic 30.0%
!! AATCTTTCTAAGATTGGACA+AGG - chr3_3:72483933-72483952 Msa0470420:intron 30.0%
!! ATCTTTCTAAGATTGGACAA+GGG - chr3_3:72483934-72483953 Msa0470420:intron 30.0%
GTCTTAAATACTTTACTCTG+TGG + chr3_3:72484257-72484276 None:intergenic 30.0%
! TATAACAGTTACCTTTTCCA+TGG + chr3_3:72484358-72484377 None:intergenic 30.0%
CTTCTTCAAGTATAACAAGT+AGG + chr3_3:72484696-72484715 None:intergenic 30.0%
GTTATACTTGAAGAAGAAAC+CGG - chr3_3:72484700-72484719 Msa0470420:CDS 30.0%
TTATACTTGAAGAAGAAACC+GGG - chr3_3:72484701-72484720 Msa0470420:CDS 30.0%
! ATATACCATTATTTGGCTTC+AGG - chr3_3:72484864-72484883 Msa0470420:five_prime_UTR 30.0%
AAATCAAAATCATGGGAGAG+TGG - chr3_3:72476945-72476964 Msa0470420:intron 35.0%
AGAACATCGTTGGTCATTAA+CGG - chr3_3:72477043-72477062 Msa0470420:intron 35.0%
AGTGAATTGAACCAGAGAAA+AGG + chr3_3:72477081-72477100 None:intergenic 35.0%
! GCTGAAACTTAAAGCACTTA+AGG - chr3_3:72477974-72477993 Msa0470420:intron 35.0%
!!! AACCATTAGTTTTGCCAAGA+CGG + chr3_3:72478474-72478493 None:intergenic 35.0%
ACCGATAACTAGTGCAATTA+AGG + chr3_3:72478578-72478597 None:intergenic 35.0%
GATCCAACGGTACAAAAAAT+TGG + chr3_3:72478643-72478662 None:intergenic 35.0%
AGAGAATGAATGAGAGTGAT+AGG + chr3_3:72478722-72478741 None:intergenic 35.0%
!! TTGTGTTGTGAGTATTGAGA+GGG + chr3_3:72478868-72478887 None:intergenic 35.0%
!! TTATCATTTTGGCACATGCT+TGG - chr3_3:72478949-72478968 Msa0470420:intron 35.0%
TGATAGAGAGATGAAGTTGA+TGG - chr3_3:72479274-72479293 Msa0470420:intron 35.0%
! GATAGAGAGATGAAGTTGAT+GGG - chr3_3:72479275-72479294 Msa0470420:intron 35.0%
TGGGTTGTATTTGATACAGA+TGG - chr3_3:72479294-72479313 Msa0470420:CDS 35.0%
!! TTTTCAGTTTTGGTCCAAGA+TGG + chr3_3:72479373-72479392 None:intergenic 35.0%
ATCTTGGACCAAAACTGAAA+AGG - chr3_3:72479372-72479391 Msa0470420:CDS 35.0%
AAGAATGTTTGACGATAGAG+TGG - chr3_3:72479446-72479465 Msa0470420:CDS 35.0%
AGAATGTTTGACGATAGAGT+GGG - chr3_3:72479447-72479466 Msa0470420:CDS 35.0%
!! TTGGCTTTGGAAATTAAGTC+AGG + chr3_3:72479856-72479875 None:intergenic 35.0%
CCACTGAATTTCAACTACTA+AGG + chr3_3:72480044-72480063 None:intergenic 35.0%
CCTTAGTAGTTGAAATTCAG+TGG - chr3_3:72480041-72480060 Msa0470420:CDS 35.0%
ATGTGTGTCCCACAAAAATT+TGG - chr3_3:72480077-72480096 Msa0470420:intron 35.0%
! TAGTGGAAGGTTTGATTTAG+TGG - chr3_3:72480228-72480247 Msa0470420:CDS 35.0%
! AGTGGAAGGTTTGATTTAGT+GGG - chr3_3:72480229-72480248 Msa0470420:CDS 35.0%
TTATATGTGACCCTTCGAAT+TGG - chr3_3:72480280-72480299 Msa0470420:intron 35.0%
AATGTATGGTCCAATTCGAA+GGG + chr3_3:72480293-72480312 None:intergenic 35.0%
ATTGAGAGTGAATGCACTTA+TGG - chr3_3:72480310-72480329 Msa0470420:intron 35.0%
TTGAGAGTGAATGCACTTAT+GGG - chr3_3:72480311-72480330 Msa0470420:intron 35.0%
!!! CTCTCAATTTTTTGCTGTAG+GGG - chr3_3:72480446-72480465 Msa0470420:intron 35.0%
GGAACATCATGTAACCATAA+TGG + chr3_3:72480476-72480495 None:intergenic 35.0%
TTATGGTTACATGATGTTCC+TGG - chr3_3:72480476-72480495 Msa0470420:intron 35.0%
CCAAAAATTGAATGCATGGA+AGG + chr3_3:72480564-72480583 None:intergenic 35.0%
! CCTTCCATGCATTCAATTTT+TGG - chr3_3:72480561-72480580 Msa0470420:intron 35.0%
TCCTTGTGAAGCAAAAAGAT+TGG + chr3_3:72480682-72480701 None:intergenic 35.0%
! AATCTTTTTGCTTCACAAGG+AGG - chr3_3:72480681-72480700 Msa0470420:intron 35.0%
TAAACCTGGGATAGTATGAT+AGG + chr3_3:72480708-72480727 None:intergenic 35.0%
GTTGCATTGAAGTTTAAACC+TGG + chr3_3:72480722-72480741 None:intergenic 35.0%
CAAAGTAAGTTTCGAGAGAA+TGG - chr3_3:72480838-72480857 Msa0470420:intron 35.0%
! TCTTGTTTACACATCATCCA+AGG + chr3_3:72480919-72480938 None:intergenic 35.0%
! CTCCGTCTATTTTATATCGT+CGG - chr3_3:72481001-72481020 Msa0470420:intron 35.0%
GACCGACGATATAAAATAGA+CGG + chr3_3:72481006-72481025 None:intergenic 35.0%
CAATGTGGGAGAAACTTTAA+GGG - chr3_3:72481152-72481171 Msa0470420:CDS 35.0%
AATGTGGGAGAAACTTTAAG+GGG - chr3_3:72481153-72481172 Msa0470420:CDS 35.0%
! TCCTTTCTTTGCTATGAACA+AGG + chr3_3:72481419-72481438 None:intergenic 35.0%
! TTCAGCTAAGTTGAAAGAGA+AGG + chr3_3:72481490-72481509 None:intergenic 35.0%
AGCTGTTATTATGAAAGCAG+AGG + chr3_3:72481590-72481609 None:intergenic 35.0%
GTTTGGTTAGACAACCAAAA+TGG - chr3_3:72481723-72481742 Msa0470420:intron 35.0%
TTGGTTAGACAACCAAAATG+GGG - chr3_3:72481725-72481744 Msa0470420:intron 35.0%
AAATTGCGGAAAATATGTCC+AGG + chr3_3:72481864-72481883 None:intergenic 35.0%
! AACTTCTGAAAACATAAGCC+TGG + chr3_3:72482021-72482040 None:intergenic 35.0%
AATTGGATTGTTACATCCCT+AGG + chr3_3:72482079-72482098 None:intergenic 35.0%
AAATCAATCAGTATCCTACC+AGG - chr3_3:72482127-72482146 Msa0470420:intron 35.0%
AAGAATGTAGTCTTCAACAC+CGG - chr3_3:72482154-72482173 Msa0470420:intron 35.0%
! AACATTCGATTTTACCTTGC+CGG + chr3_3:72482176-72482195 None:intergenic 35.0%
ATGGTCAAATCAAGTAAAGC+AGG + chr3_3:72482254-72482273 None:intergenic 35.0%
TAATTGTGGTTTCATTGCTC+TGG + chr3_3:72482374-72482393 None:intergenic 35.0%
!!! GTCTGCTCTTTTTGAAGTAT+CGG + chr3_3:72482452-72482471 None:intergenic 35.0%
ACTATATGTGGTACACTTTC+AGG - chr3_3:72482512-72482531 Msa0470420:intron 35.0%
CTAAGAACAGATTGTGCATT+AGG + chr3_3:72482674-72482693 None:intergenic 35.0%
! GTTTTGCATTCTTTCGTCAA+TGG - chr3_3:72482713-72482732 Msa0470420:intron 35.0%
!! TTCGTCAATGGAGTTTTAAC+AGG - chr3_3:72482725-72482744 Msa0470420:intron 35.0%
AGCACTAAATCTCATTTCTG+AGG - chr3_3:72482750-72482769 Msa0470420:intron 35.0%
CTTGCCGATGATGAATAAAA+AGG + chr3_3:72483061-72483080 None:intergenic 35.0%
AGGTAGAAGAAACTTCTCAA+TGG + chr3_3:72483172-72483191 None:intergenic 35.0%
! AGTCTTGTGATCTCAAATCT+AGG + chr3_3:72483192-72483211 None:intergenic 35.0%
! GATTTGAGATCACAAGACTA+TGG - chr3_3:72483193-72483212 Msa0470420:intron 35.0%
TTTACTCAAACCAGCAACTT+TGG + chr3_3:72483362-72483381 None:intergenic 35.0%
TAATTACTCATGGGGATATC+AGG - chr3_3:72483408-72483427 Msa0470420:intron 35.0%
! TAAATGAAGGTTGGGTTGTT+AGG - chr3_3:72483679-72483698 Msa0470420:intron 35.0%
TTGCAAATCTATTCAGTCAG+TGG - chr3_3:72483709-72483728 Msa0470420:intron 35.0%
GTAGGAGAAACAAAAAACCA+AGG + chr3_3:72483890-72483909 None:intergenic 35.0%
AGAATCTAGCACAAAGTAGT+AGG + chr3_3:72483908-72483927 None:intergenic 35.0%
TAAATGCTTAGCAGTTATGC+TGG + chr3_3:72483983-72484002 None:intergenic 35.0%
GAAACATACCATTGTTGTGA+AGG + chr3_3:72484230-72484249 None:intergenic 35.0%
GACTGTTTAGAAGACCTAAA+TGG + chr3_3:72484462-72484481 None:intergenic 35.0%
GTTCTTTCCTAAAATCGACT+GGG - chr3_3:72484668-72484687 Msa0470420:intron 35.0%
! GTGTGATCTTTTAAATGGAG+AGG + chr3_3:72484775-72484794 None:intergenic 35.0%
TATTCGTATGACTGAACACA+GGG + chr3_3:72484825-72484844 None:intergenic 35.0%
TTATTCGTATGACTGAACAC+AGG + chr3_3:72484826-72484845 None:intergenic 35.0%
ATATGACTTGAACGTACCTG+AGG + chr3_3:72477118-72477137 None:intergenic 40.0%
!!! GGACCAATTTTTTGTACCGT+TGG - chr3_3:72478637-72478656 Msa0470420:intron 40.0%
! TGACCATGATAAGGTTTGGT+GGG + chr3_3:72478673-72478692 None:intergenic 40.0%
ATGACCATGATAAGGTTTGG+TGG + chr3_3:72478674-72478693 None:intergenic 40.0%
TACCTTCCATATTTCCAGAG+AGG - chr3_3:72478750-72478769 Msa0470420:intron 40.0%
!! CTTGTGTTGTGAGTATTGAG+AGG + chr3_3:72478869-72478888 None:intergenic 40.0%
CAACACAAGTGACAAACTCA+AGG - chr3_3:72478880-72478899 Msa0470420:intron 40.0%
! TTGGCACATGCTTGGTAATA+TGG - chr3_3:72478957-72478976 Msa0470420:intron 40.0%
TTGGGAGTTGAGATTGTGAA+TGG - chr3_3:72479151-72479170 Msa0470420:intron 40.0%
! AGCTTGGACCTTTTCAGTTT+TGG + chr3_3:72479383-72479402 None:intergenic 40.0%
CTGAAAAGGTCCAAGCTAAA+TGG - chr3_3:72479386-72479405 Msa0470420:CDS 40.0%
TGTCTTGGTCTATAGCCTAT+AGG - chr3_3:72479748-72479767 Msa0470420:CDS 40.0%
ATTTCCAAAGCCAAAGAAGG+AGG - chr3_3:72479862-72479881 Msa0470420:intron 40.0%
! TAATCCTCCTTCTTTGGCTT+TGG + chr3_3:72479869-72479888 None:intergenic 40.0%
GACATCTAATCCTCCTTCTT+TGG + chr3_3:72479875-72479894 None:intergenic 40.0%
TGGGACACACATGATTTAGT+GGG + chr3_3:72480069-72480088 None:intergenic 40.0%
! GTGTCTCGCCAAATTTTTGT+GGG + chr3_3:72480088-72480107 None:intergenic 40.0%
! TGTGTCTCGCCAAATTTTTG+TGG + chr3_3:72480089-72480108 None:intergenic 40.0%
CTTCTGCAGTATGAGTTTAG+TGG - chr3_3:72480211-72480230 Msa0470420:CDS 40.0%
TGCAGTATGAGTTTAGTGGA+AGG - chr3_3:72480215-72480234 Msa0470420:CDS 40.0%
CAATGTATGGTCCAATTCGA+AGG + chr3_3:72480294-72480313 None:intergenic 40.0%
GTGCATTCACTCTCAATGTA+TGG + chr3_3:72480307-72480326 None:intergenic 40.0%
! GCCAATCTTTTTGCTTCACA+AGG - chr3_3:72480678-72480697 Msa0470420:intron 40.0%
GCAATGTGGGAGAAACTTTA+AGG - chr3_3:72481151-72481170 Msa0470420:CDS 40.0%
CAATTCTCTGTCCATAGTGA+AGG + chr3_3:72481197-72481216 None:intergenic 40.0%
CTTCACTATGGACAGAGAAT+TGG - chr3_3:72481195-72481214 Msa0470420:intron 40.0%
! TCTGAAGCTGATCTCAAGTA+TGG + chr3_3:72481379-72481398 None:intergenic 40.0%
! GCCTTGTTCATAGCAAAGAA+AGG - chr3_3:72481415-72481434 Msa0470420:intron 40.0%
! AGCTAAGTTGAAAGAGAAGG+AGG + chr3_3:72481487-72481506 None:intergenic 40.0%
ACGAATTTGATGCAGTACCA+TGG - chr3_3:72481541-72481560 Msa0470420:CDS 40.0%
AATTTGATGCAGTACCATGG+AGG - chr3_3:72481544-72481563 Msa0470420:CDS 40.0%
TTATTATGATGAGGCTCCAC+TGG - chr3_3:72481609-72481628 Msa0470420:intron 40.0%
TCCACTGGATGAATATGGTA+TGG - chr3_3:72481624-72481643 Msa0470420:intron 40.0%
ACCATACCATATTCATCCAG+TGG + chr3_3:72481628-72481647 None:intergenic 40.0%
TTTGGTTGTCTAACCAAACC+TGG + chr3_3:72481722-72481741 None:intergenic 40.0%
ACCAAAATGGGGACATCTTA+AGG - chr3_3:72481736-72481755 Msa0470420:intron 40.0%
! TCCTTAAGATGTCCCCATTT+TGG + chr3_3:72481740-72481759 None:intergenic 40.0%
TGTTCACAACCTCTACTTGA+TGG - chr3_3:72481782-72481801 Msa0470420:intron 40.0%
! GTTTGAGTTCCATCAAGTAG+AGG + chr3_3:72481794-72481813 None:intergenic 40.0%
! TTTTCTCACCTTTTTCCACC+AGG - chr3_3:72482000-72482019 Msa0470420:intron 40.0%
AACATAAGCCTGGTGGAAAA+AGG + chr3_3:72482011-72482030 None:intergenic 40.0%
! TTCTGAAAACATAAGCCTGG+TGG + chr3_3:72482018-72482037 None:intergenic 40.0%
! AGGTCCACTATTTTCCAAGA+AGG + chr3_3:72482059-72482078 None:intergenic 40.0%
!! TCTTGGAAAATAGTGGACCT+AGG - chr3_3:72482059-72482078 Msa0470420:intron 40.0%
!! CTTGGAAAATAGTGGACCTA+GGG - chr3_3:72482060-72482079 Msa0470420:intron 40.0%
! AGGATACTGATTGATTTCCC+AGG + chr3_3:72482124-72482143 None:intergenic 40.0%
!! AGTATCGGCAAAATTAGGGA+TGG + chr3_3:72482437-72482456 None:intergenic 40.0%
CAAACATTCTTTAGTGCAGC+TGG + chr3_3:72482562-72482581 None:intergenic 40.0%
!! TGTTGAATTGTTGATGGTGC+AGG - chr3_3:72482633-72482652 Msa0470420:intron 40.0%
! TTCTGAGGATCATGTTCCTT+AGG - chr3_3:72482765-72482784 Msa0470420:intron 40.0%
AGGATCATGTTCCTTAGGAT+AGG - chr3_3:72482770-72482789 Msa0470420:intron 40.0%
ACATCTTTGGGCAAAAGACT+TGG - chr3_3:72482799-72482818 Msa0470420:intron 40.0%
TTAACTGTAGGTTCTGCACA+TGG - chr3_3:72482913-72482932 Msa0470420:intron 40.0%
TCCATACTTAGTGCAACAGT+GGG - chr3_3:72483003-72483022 Msa0470420:intron 40.0%
! TTTCTAGAGACCAAAGTTGC+TGG - chr3_3:72483349-72483368 Msa0470420:intron 40.0%
!! AGTTGCTGGTTTGAGTAAAG+TGG - chr3_3:72483363-72483382 Msa0470420:intron 40.0%
TTGAGTAAAGTGGAAGTCCA+AGG - chr3_3:72483373-72483392 Msa0470420:intron 40.0%
AATTCTACATCAGCATGCAG+TGG + chr3_3:72483657-72483676 None:intergenic 40.0%
GTGGATCAAGTAAAGTTCAG+TGG - chr3_3:72483728-72483747 Msa0470420:intron 40.0%
TAAACCACTCACATGGTATC+AGG - chr3_3:72483771-72483790 Msa0470420:intron 40.0%
ATTACCTGATACCATGTGAG+TGG + chr3_3:72483778-72483797 None:intergenic 40.0%
ACCAAGGTCTTTACGAGATT+GGG + chr3_3:72483874-72483893 None:intergenic 40.0%
AACCAAGGTCTTTACGAGAT+TGG + chr3_3:72483875-72483894 None:intergenic 40.0%
TAAGATTGGACAAGGGATGA+AGG - chr3_3:72483941-72483960 Msa0470420:intron 40.0%
!! AGTGCTTAACCTTGGTTCTA+TGG - chr3_3:72484130-72484149 Msa0470420:intron 40.0%
!! GTGCTTAACCTTGGTTCTAT+GGG - chr3_3:72484131-72484150 Msa0470420:intron 40.0%
!! TAACCTTGGTTCTATGGGAA+AGG - chr3_3:72484136-72484155 Msa0470420:intron 40.0%
!! AACCTTGGTTCTATGGGAAA+GGG - chr3_3:72484137-72484156 Msa0470420:intron 40.0%
!! CCAAGGTATTGGACGATATT+GGG - chr3_3:72484178-72484197 Msa0470420:intron 40.0%
GTATCTTTCCACAAACCAGA+TGG - chr3_3:72484200-72484219 Msa0470420:intron 40.0%
ATGGAACTCCTTCACAACAA+TGG - chr3_3:72484219-72484238 Msa0470420:intron 40.0%
!! GTCGATTTTAGGAAAGAACG+TGG + chr3_3:72484667-72484686 None:intergenic 40.0%
CGTTCTTTCCTAAAATCGAC+TGG - chr3_3:72484667-72484686 Msa0470420:intron 40.0%
! TGTCTAGAGTGATTCCTAAG+GGG + chr3_3:72484729-72484748 None:intergenic 40.0%
! GTGTCTAGAGTGATTCCTAA+GGG + chr3_3:72484730-72484749 None:intergenic 40.0%
! TGTGTCTAGAGTGATTCCTA+AGG + chr3_3:72484731-72484750 None:intergenic 40.0%
GTGAACCTGAAGCCAAATAA+TGG + chr3_3:72484872-72484891 None:intergenic 40.0%
! GCTTCAGGTTCACTCTAAAA+GGG - chr3_3:72484879-72484898 Msa0470420:five_prime_UTR 40.0%
TCAAAATCATGGGAGAGTGG+TGG - chr3_3:72476948-72476967 Msa0470420:intron 45.0%
TACCTACGACAGAACATCGT+TGG - chr3_3:72477033-72477052 Msa0470420:intron 45.0%
AAAAAGAGAGGCAGAGACGA+GGG - chr3_3:72477364-72477383 Msa0470420:intron 45.0%
!! CATTCGAGAGGGAGTATTAC+TGG - chr3_3:72477911-72477930 Msa0470420:intron 45.0%
!! TAGTTTTGCCAAGACGGCAA+AGG + chr3_3:72478468-72478487 None:intergenic 45.0%
TGCCGTCTTGGCAAAACTAA+TGG - chr3_3:72478469-72478488 Msa0470420:intron 45.0%
! GGTGGGTTCATATGATCCAA+CGG + chr3_3:72478656-72478675 None:intergenic 45.0%
GAACCCACCAAACCTTATCA+TGG - chr3_3:72478667-72478686 Msa0470420:intron 45.0%
! TGCCTCTCTGGAAATATGGA+AGG + chr3_3:72478755-72478774 None:intergenic 45.0%
! TTGCTGCCTCTCTGGAAATA+TGG + chr3_3:72478759-72478778 None:intergenic 45.0%
AGACTTTATTGCTGCCTCTC+TGG + chr3_3:72478767-72478786 None:intergenic 45.0%
TCAAGGTTGTGCTACCATAG+AGG - chr3_3:72478897-72478916 Msa0470420:intron 45.0%
CAAGGTTGTGCTACCATAGA+GGG - chr3_3:72478898-72478917 Msa0470420:intron 45.0%
ACTTGCTTCAGCCTTGCAAA+TGG - chr3_3:72479029-72479048 Msa0470420:intron 45.0%
AGAGAAGTAGTAGCTGGGAT+TGG - chr3_3:72479066-72479085 Msa0470420:intron 45.0%
GAGAAGTAGTAGCTGGGATT+GGG - chr3_3:72479067-72479086 Msa0470420:intron 45.0%
!! AACTAGGGTGCCATTTAGCT+TGG + chr3_3:72479399-72479418 None:intergenic 45.0%
ATGTTTGACGATAGAGTGGG+TGG - chr3_3:72479450-72479469 Msa0470420:intron 45.0%
AATCTTCACGAGCCTCAACA+AGG - chr3_3:72479916-72479935 Msa0470420:intron 45.0%
TATGCACCAATGAGGTTACC+TGG + chr3_3:72479942-72479961 None:intergenic 45.0%
GTGGGACACACATGATTTAG+TGG + chr3_3:72480070-72480089 None:intergenic 45.0%
AGGACCTATCATACTATCCC+AGG - chr3_3:72480701-72480720 Msa0470420:intron 45.0%
! ATGGGTTGCCCTATATTCGT+TGG - chr3_3:72480857-72480876 Msa0470420:intron 45.0%
TGGGTTGCCCTATATTCGTT+GGG - chr3_3:72480858-72480877 Msa0470420:intron 45.0%
ATACTTGAGAGACTGACCAC+TGG + chr3_3:72480955-72480974 None:intergenic 45.0%
ATGCAGATCAACGCATGCAA+TGG - chr3_3:72481125-72481144 Msa0470420:CDS 45.0%
CATGCAATGGCATGCAATGT+GGG - chr3_3:72481138-72481157 Msa0470420:CDS 45.0%
!! GAAGGCTTGTTAGGAGAGTT+TGG + chr3_3:72481179-72481198 None:intergenic 45.0%
CTCCTAACAAGCCTTCACTA+TGG - chr3_3:72481183-72481202 Msa0470420:intron 45.0%
! GTCCATAGTGAAGGCTTGTT+AGG + chr3_3:72481188-72481207 None:intergenic 45.0%
CACAGTCAGTCACGTAACAA+TGG + chr3_3:72481690-72481709 None:intergenic 45.0%
TTACGTGACTGACTGTGCTA+AGG - chr3_3:72481693-72481712 Msa0470420:intron 45.0%
TGTGCTAAGGTAACCAGGTT+TGG - chr3_3:72481706-72481725 Msa0470420:intron 45.0%
ACTCAAACCACCTTCAGCTT+AGG - chr3_3:72481806-72481825 Msa0470420:intron 45.0%
GCTGCCTTCTTGGAAAATAG+TGG - chr3_3:72482052-72482071 Msa0470420:intron 45.0%
AAGACTACATTCTTGCAGCC+TGG + chr3_3:72482148-72482167 None:intergenic 45.0%
CTCCATACTTAGTGCAACAG+TGG - chr3_3:72483002-72483021 Msa0470420:intron 45.0%
TCCCACTGTTGCACTAAGTA+TGG + chr3_3:72483007-72483026 None:intergenic 45.0%
GCTCTACTAAACCACTCACA+TGG - chr3_3:72483764-72483783 Msa0470420:intron 45.0%
AGGTCTTTACGAGATTGGGT+TGG + chr3_3:72483870-72483889 None:intergenic 45.0%
ACCCAATCTCGTAAAGACCT+TGG - chr3_3:72483870-72483889 Msa0470420:intron 45.0%
GATCCTGTAGTGCTTAACCT+TGG - chr3_3:72484122-72484141 Msa0470420:intron 45.0%
GAACCAAGGTTAAGCACTAC+AGG + chr3_3:72484128-72484147 None:intergenic 45.0%
! TATGGGAAAGGGACTTGCTT+GGG - chr3_3:72484148-72484167 Msa0470420:intron 45.0%
! AAGGGACTTGCTTGGGTTAA+TGG - chr3_3:72484155-72484174 Msa0470420:intron 45.0%
TGGGTTAATGGCCAAGGTAT+TGG - chr3_3:72484167-72484186 Msa0470420:intron 45.0%
!! GCCAAGGTATTGGACGATAT+TGG - chr3_3:72484177-72484196 Msa0470420:intron 45.0%
CCCAATATCGTCCAATACCT+TGG + chr3_3:72484181-72484200 None:intergenic 45.0%
! AAGGAGTTCCATCTGGTTTG+TGG + chr3_3:72484211-72484230 None:intergenic 45.0%
TGTTGTGAAGGAGTTCCATC+TGG + chr3_3:72484218-72484237 None:intergenic 45.0%
!! GTAGGTTCCCAGTCGATTTT+AGG + chr3_3:72484678-72484697 None:intergenic 45.0%
! GGCTTCAGGTTCACTCTAAA+AGG - chr3_3:72484878-72484897 Msa0470420:five_prime_UTR 45.0%
TCTTACAAGCAAAGAGCCAC+CGG - chr3_3:72484906-72484925 Msa0470420:five_prime_UTR 45.0%
!!! TATTTAATTATTTTTTTTAC+TGG - chr3_3:72478442-72478461 Msa0470420:CDS 5.0%
GGTAACATTGCCACCATGGA+CGG + chr3_3:72477017-72477036 None:intergenic 50.0%
CGTAGGTAACATTGCCACCA+TGG + chr3_3:72477021-72477040 None:intergenic 50.0%
GACCAACGATGTTCTGTCGT+AGG + chr3_3:72477038-72477057 None:intergenic 50.0%
GAAAAAGAGAGGCAGAGACG+AGG - chr3_3:72477363-72477382 Msa0470420:intron 50.0%
! TCATTGATGGCAACTGCCAG+TGG - chr3_3:72478127-72478146 Msa0470420:intron 50.0%
GTACACACAAGTGATGCCAC+TGG + chr3_3:72478146-72478165 None:intergenic 50.0%
!! TTTACTGGCCTTTGCCGTCT+TGG - chr3_3:72478457-72478476 Msa0470420:CDS 50.0%
ACAAGGCCAGGTAACCTCAT+TGG - chr3_3:72479933-72479952 Msa0470420:intron 50.0%
GCTGTAGGGGTCTACCATTA+TGG - chr3_3:72480459-72480478 Msa0470420:intron 50.0%
TGGGCAGCCCAACGAATATA+GGG + chr3_3:72480868-72480887 None:intergenic 50.0%
TTGGGCAGCCCAACGAATAT+AGG + chr3_3:72480869-72480888 None:intergenic 50.0%
TATTCGTTGGGCTGCCCAAA+TGG - chr3_3:72480870-72480889 Msa0470420:CDS 50.0%
TTGAAGTCCCACGGCCATTT+GGG + chr3_3:72480887-72480906 None:intergenic 50.0%
! TTTGAAGTCCCACGGCCATT+TGG + chr3_3:72480888-72480907 None:intergenic 50.0%
ACACATCATCCAAGGCACAC+CGG + chr3_3:72480911-72480930 None:intergenic 50.0%
AGATGATGCTCCTGATCCAG+TGG - chr3_3:72480936-72480955 Msa0470420:CDS 50.0%
GCATGCAATGGCATGCAATG+TGG - chr3_3:72481137-72481156 Msa0470420:CDS 50.0%
GAGGCTCCACTGGATGAATA+TGG - chr3_3:72481619-72481638 Msa0470420:intron 50.0%
CTGACTGTGCTAAGGTAACC+AGG - chr3_3:72481701-72481720 Msa0470420:intron 50.0%
TTGCTGTGAGCCTAAGCTGA+AGG + chr3_3:72481819-72481838 None:intergenic 50.0%
CAAGAAGGCAGCACATTCTG+TGG + chr3_3:72482044-72482063 None:intergenic 50.0%
CACAGAATGTGCTGCCTTCT+TGG - chr3_3:72482042-72482061 Msa0470420:intron 50.0%
CTACATTCTTGCAGCCTGGT+AGG + chr3_3:72482144-72482163 None:intergenic 50.0%
TGTAGTCTTCAACACCGGCA+AGG - chr3_3:72482159-72482178 Msa0470420:intron 50.0%
TAGTGCAACAGTGGGATTGC+CGG - chr3_3:72483011-72483030 Msa0470420:intron 50.0%
ACTACAGGATCATTGCCAGC+TGG + chr3_3:72484113-72484132 None:intergenic 50.0%
GTCCCTTTCCCATAGAACCA+AGG + chr3_3:72484142-72484161 None:intergenic 50.0%
! CTATGGGAAAGGGACTTGCT+TGG - chr3_3:72484147-72484166 Msa0470420:intron 50.0%
CTTGCTTGGGTTAATGGCCA+AGG - chr3_3:72484161-72484180 Msa0470420:intron 50.0%
AGTGATTCCTAAGGGGTTCC+CGG + chr3_3:72484722-72484741 None:intergenic 50.0%
GTGTCTCTTTGCACCGTCCA+TGG - chr3_3:72477001-72477020 Msa0470420:intron 55.0%
TCTCTTTGCACCGTCCATGG+TGG - chr3_3:72477004-72477023 Msa0470420:intron 55.0%
CTATCCTCGTAGCACTCCTC+AGG - chr3_3:72477099-72477118 Msa0470420:CDS 55.0%
AGTAGCTGGGATTGGGAGCT+TGG - chr3_3:72479074-72479093 Msa0470420:CDS 55.0%
GTAGCTGGGATTGGGAGCTT+GGG - chr3_3:72479075-72479094 Msa0470420:CDS 55.0%
!! GAGGTTACCTGGCCTTGTTG+AGG + chr3_3:72479931-72479950 None:intergenic 55.0%
ATGGCCGTGGGACTTCAAAC+CGG - chr3_3:72480889-72480908 Msa0470420:CDS 55.0%
!! CACACCGGTTTGAAGTCCCA+CGG + chr3_3:72480896-72480915 None:intergenic 55.0%
GACTTCAAACCGGTGTGCCT+TGG - chr3_3:72480899-72480918 Msa0470420:CDS 55.0%
GAGAGACTGACCACTGGATC+AGG + chr3_3:72480949-72480968 None:intergenic 55.0%
CTGTGAGCCTAAGCTGAAGG+TGG + chr3_3:72481816-72481835 None:intergenic 55.0%
ACCACATTCGATGCACCAGC+TGG - chr3_3:72484095-72484114 Msa0470420:intron 55.0%
GAAGAAACCGGGAACCCCTT+AGG - chr3_3:72484712-72484731 Msa0470420:CDS 55.0%
!! CGTACCTGAGGAGTGCTACG+AGG + chr3_3:72477106-72477125 None:intergenic 60.0%
AAGAGAGGCAGAGACGAGGG+AGG - chr3_3:72477367-72477386 Msa0470420:intron 60.0%
AGAGAGGCAGAGACGAGGGA+GGG - chr3_3:72477368-72477387 Msa0470420:intron 60.0%
TCACGAGCCTCAACAAGGCC+AGG - chr3_3:72479921-72479940 Msa0470420:intron 60.0%
GCCAGCTGGTGCATCGAATG+TGG + chr3_3:72484099-72484118 None:intergenic 60.0%
TTGGGCTGCCCAAATGGCCG+TGG - chr3_3:72480876-72480895 Msa0470420:CDS 65.0%
TGGGCTGCCCAAATGGCCGT+GGG - chr3_3:72480877-72480896 Msa0470420:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 72476885 72484933 72476885 ID=Msa0470420;Name=Msa0470420
chr3_3 mRNA 72476885 72484933 72476885 ID=Msa0470420-mRNA-1;Parent=Msa0470420;Name=Msa0470420-mRNA-1;_AED=0.06;_eAED=0.06;_QI=71|0.38|0.31|1|1|1|19|0|704
chr3_3 exon 72476885 72476932 72476885 ID=Msa0470420-mRNA-1:exon:18086;Parent=Msa0470420-mRNA-1
chr3_3 exon 72477068 72477164 72477068 ID=Msa0470420-mRNA-1:exon:18085;Parent=Msa0470420-mRNA-1
chr3_3 exon 72477578 72477723 72477578 ID=Msa0470420-mRNA-1:exon:18084;Parent=Msa0470420-mRNA-1
chr3_3 exon 72478026 72478130 72478026 ID=Msa0470420-mRNA-1:exon:18083;Parent=Msa0470420-mRNA-1
chr3_3 exon 72478389 72478481 72478389 ID=Msa0470420-mRNA-1:exon:18082;Parent=Msa0470420-mRNA-1
chr3_3 exon 72478786 72478895 72478786 ID=Msa0470420-mRNA-1:exon:18081;Parent=Msa0470420-mRNA-1
chr3_3 exon 72479072 72479163 72479072 ID=Msa0470420-mRNA-1:exon:18080;Parent=Msa0470420-mRNA-1
chr3_3 exon 72479285 72479466 72479285 ID=Msa0470420-mRNA-1:exon:18079;Parent=Msa0470420-mRNA-1
chr3_3 exon 72479638 72479796 72479638 ID=Msa0470420-mRNA-1:exon:18078;Parent=Msa0470420-mRNA-1
chr3_3 exon 72479977 72480095 72479977 ID=Msa0470420-mRNA-1:exon:18077;Parent=Msa0470420-mRNA-1
chr3_3 exon 72480178 72480262 72480178 ID=Msa0470420-mRNA-1:exon:18076;Parent=Msa0470420-mRNA-1
chr3_3 exon 72480359 72480464 72480359 ID=Msa0470420-mRNA-1:exon:18075;Parent=Msa0470420-mRNA-1
chr3_3 exon 72480593 72480687 72480593 ID=Msa0470420-mRNA-1:exon:18074;Parent=Msa0470420-mRNA-1
chr3_3 exon 72480861 72481004 72480861 ID=Msa0470420-mRNA-1:exon:18073;Parent=Msa0470420-mRNA-1
chr3_3 exon 72481096 72481188 72481096 ID=Msa0470420-mRNA-1:exon:18072;Parent=Msa0470420-mRNA-1
chr3_3 exon 72481286 72481352 72481286 ID=Msa0470420-mRNA-1:exon:18071;Parent=Msa0470420-mRNA-1
chr3_3 exon 72481486 72481598 72481486 ID=Msa0470420-mRNA-1:exon:18070;Parent=Msa0470420-mRNA-1
chr3_3 exon 72481876 72481971 72481876 ID=Msa0470420-mRNA-1:exon:18069;Parent=Msa0470420-mRNA-1
chr3_3 exon 72484698 72484933 72484698 ID=Msa0470420-mRNA-1:exon:18068;Parent=Msa0470420-mRNA-1
chr3_3 five_prime_UTR 72484863 72484933 72484863 ID=Msa0470420-mRNA-1:five_prime_utr;Parent=Msa0470420-mRNA-1
chr3_3 CDS 72484698 72484862 72484698 ID=Msa0470420-mRNA-1:cds;Parent=Msa0470420-mRNA-1
chr3_3 CDS 72481876 72481971 72481876 ID=Msa0470420-mRNA-1:cds;Parent=Msa0470420-mRNA-1
chr3_3 CDS 72481486 72481598 72481486 ID=Msa0470420-mRNA-1:cds;Parent=Msa0470420-mRNA-1
chr3_3 CDS 72481286 72481352 72481286 ID=Msa0470420-mRNA-1:cds;Parent=Msa0470420-mRNA-1
chr3_3 CDS 72481096 72481188 72481096 ID=Msa0470420-mRNA-1:cds;Parent=Msa0470420-mRNA-1
chr3_3 CDS 72480861 72481004 72480861 ID=Msa0470420-mRNA-1:cds;Parent=Msa0470420-mRNA-1
chr3_3 CDS 72480593 72480687 72480593 ID=Msa0470420-mRNA-1:cds;Parent=Msa0470420-mRNA-1
chr3_3 CDS 72480359 72480464 72480359 ID=Msa0470420-mRNA-1:cds;Parent=Msa0470420-mRNA-1
chr3_3 CDS 72480178 72480262 72480178 ID=Msa0470420-mRNA-1:cds;Parent=Msa0470420-mRNA-1
chr3_3 CDS 72479977 72480095 72479977 ID=Msa0470420-mRNA-1:cds;Parent=Msa0470420-mRNA-1
chr3_3 CDS 72479638 72479796 72479638 ID=Msa0470420-mRNA-1:cds;Parent=Msa0470420-mRNA-1
chr3_3 CDS 72479285 72479466 72479285 ID=Msa0470420-mRNA-1:cds;Parent=Msa0470420-mRNA-1
chr3_3 CDS 72479072 72479163 72479072 ID=Msa0470420-mRNA-1:cds;Parent=Msa0470420-mRNA-1
chr3_3 CDS 72478786 72478895 72478786 ID=Msa0470420-mRNA-1:cds;Parent=Msa0470420-mRNA-1
chr3_3 CDS 72478389 72478481 72478389 ID=Msa0470420-mRNA-1:cds;Parent=Msa0470420-mRNA-1
chr3_3 CDS 72478026 72478130 72478026 ID=Msa0470420-mRNA-1:cds;Parent=Msa0470420-mRNA-1
chr3_3 CDS 72477578 72477723 72477578 ID=Msa0470420-mRNA-1:cds;Parent=Msa0470420-mRNA-1
chr3_3 CDS 72477068 72477164 72477068 ID=Msa0470420-mRNA-1:cds;Parent=Msa0470420-mRNA-1
chr3_3 CDS 72476885 72476932 72476885 ID=Msa0470420-mRNA-1:cds;Parent=Msa0470420-mRNA-1
Gene Sequence

>Msa0470420

ATGGGAGAGTGGTGGCGTTTTTTATTACATGCACTTATTTTAACAGTGTCTCTTTGCACCGTCCATGGTGGCAATGTTACCTACGACAGAACATCGTTGGTCATTAACGGCCATCATAAAATCCTTTTCTCTGGTTCAATTCACTATCCTCGTAGCACTCCTCAGATGTGGCCTGACTTAATTTCCAAAGCCAAAGAAGGAGGATTAGATGTCATACAAACTTACGTGTTTTGGAATCTTCACGAGCCTCAACAAGGCCAGTATGAGTTTAGTGGAAGGTTTGATTTAGTGGGATTCATTAAAGAAATTCAAGCTCAAGGTTTATATGTGACCCTTCGAATTGGACCATACATTGAGAGTGAATGCACTTATGGGGGTCTACCATTATGGTTACATGATGTTCCTGGAATTGTATTTAGAAGTGATAATGATCAATTCAAGTTTCACATGCAAAGATTCACTACCAAAATAGTCAACATGATGAAATCAGCCAATCTTTTTGCTTCACAAGGAGGACCTATCATACTATCCCAGATTGAGAATGAATATGGCAGCATTCAAAGTAAGTTTCGAGAGAATGGGTTGCCCTATATTCGTTGGGCTGCCCAAATGGCCGTGGGACTTCAAACCGGTGTGCCTTGGATGATGTGTAAACAAGATGATGCTCCTGATCCAGTGATCAACGCATGCAATGGCATGCAATGTGGGAGAAACTTTAAGGGGCCAAACTCTCCTAACAAGCCTTCACTATGGACAGAGAATTGGACTAGCTTTTTACAAGCTTTTGGTGGAGCACCATACTTGAGATCAGCTTCAGACATTGCCTATAATGTTGCCTTGTTCATAGCAAAGAAAGGAAGTTATGTCAATTATTACATGTACCATGGAGGAACTAATTTTGATAGATTGGCCTCTGCTTTCATAATAACAGCTTATTATGATGAGGCTCCACTGGATGAATATGGTTTGGTTAGACAACCAAAATGGGGACATCTTAAGGAGCTACATGCTGCAATCAAGTCATGTTCACAACCTCTACTTGATGGAACTCAAACCACCTTCAGCTTAGGCTCACAGCAACAAGCTTATGTTTTCAGAAGTTCCACAGAATGTGCTGCCTTCTTGGAAAATAGTGGACCTAGGGATGTAACAATCCAATTTCAAAATATTTCGTATGAATTGCCTGGGAAATCAATCAGTATCCTACCAGGCTGCAAGAATGTAGTCTTCAACACCGGCAAGGTGAGTATACAGAATAATGCCAGAGCAATGAAACCACAATTAAAGTTCAATTCAGCTGAAAATTGGAAAGTGTATACAGAAGCCATCCCTAATTTTGCCGATACTTCAAAAAGAGCAGACACATTATTAGATCAAATCAGCACAGCAAAAGATACATCTGACTATATGTGGTACACTTTCAGGTTTAATAACAAATCTCCTAATGCACAATCTGTTCTTAGTATATACAGTCAAGGACATGTTTTGCATTCTTTCGTCAATGGAGTTTTAACAGGTTCTGCACATGGAAGTCGCAACAATATGCAAGTTACAATGGAGAAAAATGTCAATCTGATAAACGGGATGAACAACATCTCCATACTTAGTGCAACAGTGGGATTGCCGAACTCGGGAGCATTTCTAGAGACCAAAGTTGCTGGTTTGAGTAAAGTGGAAGTCCAAGGAAGAGATTTCAGTAATTACTCATGGGGATATCAGGTTGGGTTGTTAGGAGAAAAATTGCAAATCTATTCAGTCAGTGGATCAAGTAAAGTTCAGTGGAAAAGTTTTCAAAGCTCTACTAAACCACTCACATGGTATCAGACCACATTCGATGCACCAGCTGGCAATGATCCTGTAGTGCTTAACCTTGGTTCTATGGGAAAGGGACTTGCTTGGGTTAATGGCCAAGGTATTGGACGATATTGGGTATCTTTCCACAAACCAGATGGAACTCCTTCACAACAATGGTATCACATACCACGTTCTTTCCTAAAATCGACTGGGAACCTACTTGTTATACTTGAAGAAGAAACCGGGAACCCCTTAGGAATCACTCTAGACACAGTTCACTCTAAAAGGGTTTATCTTACAAGCAAAGAGCCACCGGTATAG
Protein sequence

>Msa0470420

MGEWWRFLLHALILTVSLCTVHGGNVTYDRTSLVINGHHKILFSGSIHYPRSTPQMWPDLISKAKEGGLDVIQTYVFWNLHEPQQGQYEFSGRFDLVGFIKEIQAQGLYVTLRIGPYIESECTYGGLPLWLHDVPGIVFRSDNDQFKFHMQRFTTKIVNMMKSANLFASQGGPIILSQIENEYGSIQSKFRENGLPYIRWAAQMAVGLQTGVPWMMCKQDDAPDPVINACNGMQCGRNFKGPNSPNKPSLWTENWTSFLQAFGGAPYLRSASDIAYNVALFIAKKGSYVNYYMYHGGTNFDRLASAFIITAYYDEAPLDEYGLVRQPKWGHLKELHAAIKSCSQPLLDGTQTTFSLGSQQQAYVFRSSTECAAFLENSGPRDVTIQFQNISYELPGKSISILPGCKNVVFNTGKVSIQNNARAMKPQLKFNSAENWKVYTEAIPNFADTSKRADTLLDQISTAKDTSDYMWYTFRFNNKSPNAQSVLSIYSQGHVLHSFVNGVLTGSAHGSRNNMQVTMEKNVNLINGMNNISILSATVGLPNSGAFLETKVAGLSKVEVQGRDFSNYSWGYQVGLLGEKLQIYSVSGSSKVQWKSFQSSTKPLTWYQTTFDAPAGNDPVVLNLGSMGKGLAWVNGQGIGRYWVSFHKPDGTPSQQWYHIPRSFLKSTGNLLVILEEETGNPLGITLDTVHSKRVYLTSKEPPV*